Global Patent Index - EP 1285390 A2

EP 1285390 A2 20030226 - METHOD AND SYSTEM FOR THE ASSEMBLY OF A WHOLE GENOME USING A SHOT-GUN DATA SET

Title (en)

METHOD AND SYSTEM FOR THE ASSEMBLY OF A WHOLE GENOME USING A SHOT-GUN DATA SET

Title (de)

VERFAHREN UND GERÄT ZUM MONTIEREN EINES GESAMTGENOMS MITTELS EINES "SHOT GUN"-DATENSATZES

Title (fr)

PROCEDE ET SYSTEME D'ASSEMBLAGE D'UN GENOME ENTIER AU MOYEN D'UN ENSEMBLE DE DONNEES PRISES AU HASARD

Publication

EP 1285390 A2 20030226 (EN)

Application

EP 01908713 A 20010129

Priority

  • US 0102704 W 20010129
  • US 18375800 P 20000222
  • US 52613100 A 20000315

Abstract (en)

[origin: WO0163543A2] The present invention provides methods and systems for assembling a genome from a shot-gun set of end sequenced DNA fragments. Specifically, the present invention provides a method of determining the genomic sequence (base sequence and orientation) of a complex genome using DNA sequence information generated from a collection of DNA fragments obtained from the genome. The present method is particularly useful in assembling genomes of at least 10MB (up to 5GB) and which are made up of at least 5% repetitive DNA sequences (up to 25% repetitive), but can be used also for smaller genomes with a lower percentage of repetitive DNA.

IPC 1-7

G06F 19/00

IPC 8 full level

G01N 33/48 (2006.01); G16B 30/20 (2019.01); C12N 15/09 (2006.01); C12Q 1/68 (2006.01); G06F 17/30 (2006.01); G16B 30/10 (2019.01)

CPC (source: EP US)

G16B 30/00 (2019.01 - EP); G16B 30/10 (2019.01 - EP US); G16B 30/20 (2019.01 - EP US)

Citation (search report)

See references of WO 0163543A2

Designated contracting state (EPC)

AT BE CH CY DE DK ES FI FR GB GR IE IT LI LU MC NL PT SE TR

DOCDB simple family (publication)

WO 0163543 A2 20010830; WO 0163543 A3 20021205; WO 0163543 A8 20020207; AU 3655501 A 20010903; CA 2400890 A1 20010830; EP 1285390 A2 20030226; JP 2003530631 A 20031014

DOCDB simple family (application)

US 0102704 W 20010129; AU 3655501 A 20010129; CA 2400890 A 20010129; EP 01908713 A 20010129; JP 2001562433 A 20010129