Global Patent Index - EP 2789696 A1

EP 2789696 A1 20141015 - Method for high-throughput AFLP-based polymorphism detection

Title (en)

Method for high-throughput AFLP-based polymorphism detection

Title (de)

Verfahren zur auf AFLP basierenden Hochdurchsatz-Polymorphismusdetektion

Title (fr)

Procédé pour la détection de polymorphisme à base AFLP à haut rendement

Publication

EP 2789696 A1 20141015 (EN)

Application

EP 14166884 A 20061220

Priority

  • US 75259005 P 20051222
  • EP 10186841 A 20061220
  • EP 06835670 A 20061220

Abstract (en)

The invention relates to a method for the high throughput discovery, detection and genotyping of one or more genetic markers in one or more samples, comprising the steps of restriction endonuclease digest of DNA, adaptor-ligation, optional pre-amplification, selective amplification, pooling of the amplified products, sequencing the libraries with sufficient redundancy, clustering followed by identification of the genetic markers within the library and/or between libraries and determination of (co-)dominant genotypes of the genetic markers.

IPC 8 full level

C12Q 1/68 (2006.01)

CPC (source: CN EP US)

C12Q 1/6827 (2013.01 - CN EP US); C12Q 1/6855 (2013.01 - US); C12Q 1/6869 (2013.01 - US); C12Q 1/6874 (2013.01 - US); C12Q 1/6876 (2013.01 - US); C12Q 1/6883 (2013.01 - US); C12Q 2600/156 (2013.01 - US); C12Q 2600/16 (2013.01 - US)

Citation (applicant)

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  • EP 0534858 A1 19930331 - KEYGENE NV [NL]
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Citation (search report)

  • [E] WO 2007055568 A1 20070518 - KEYGENE NV [NL], et al
  • [YD] WO 2005003375 A2 20050113 - 454 CORP [US], et al
  • [Y] WO 03050242 A2 20030619 - RUBICON GENOMICS INC [US], et al
  • [A] WO 0061801 A2 20001019 - KEYGENE NV [NL], et al
  • [A] US 2003190645 A1 20031009 - VAN EIJK MICHAEL JOSEPHUS THER [NL], et al
  • [A] WO 0024939 A1 20000504 - AFFYMETRIX INC [US], et al
  • [A] US 2005095645 A1 20050505 - JONES KEITH W [US], et al
  • [A] WO 0121840 A2 20010329 - GENE LOGIC INC [US], et al
  • [A] US 6013445 A 20000111 - ALBRECHT GLENN [US], et al
  • [T] EP 0534858 A1 19930331 - KEYGENE NV [NL]
  • [XP] MICHIEL J T VAN EIJK: "Complexity Reduction Of Polymorphic Sequences (CRoPS): A Novel Approach For High Througput Polymorphism Discovery", INTERNET CITATION, 2006, XP002452165, Retrieved from the Internet <URL:http://www.intl-pag.org/14/abstracts/PAG14_W410.html> [retrieved on 20070921]
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  • [A] NICOD J-C ET AL: "SNPs by AFLP (SBA): a rapid SNP isolation strategy for non-model organisms", NUCLEIC ACIDS RESEARCH, OXFORD UNIVERSITY PRESS, SURREY, GB, vol. 31, no. 5, 1 March 2003 (2003-03-01), pages E19-1 - E19-5, XP002398230, ISSN: 0305-1048
  • [A] KLEIN P E ET AL: "A high-throughput AFLP-based method for constructing integrated genetic and physical maps: Progress toward a sorghum genome map", GENOME RESEARCH, COLD SPRING HARBOR LABORATORY PRESS, WOODBURY, NY, US, vol. 10, no. 6, 1 June 2000 (2000-06-01), pages 789 - 807, XP002240094, ISSN: 1088-9051, DOI: 10.1101/GR.10.6.789
  • [T] NATHALIE J. VAN ORSOUW ET AL: "Complexity Reduction of Polymorphic Sequences (CRoPS(TM)): A Novel Approach for Large-Scale Polymorphism Discovery in Complex Genomes", PLOS ONE, vol. 2, no. 11, 1 January 2007 (2007-01-01), pages e1172 - e1172, XP055033034, ISSN: 1932-6203, DOI: 10.1371/journal.pone.0001172

Designated contracting state (EPC)

AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI SK TR

DOCDB simple family (publication)

WO 2007073165 A1 20070628; CN 101374963 A 20090225; CN 101374963 B 20140604; CN 103937899 A 20140723; CN 103937899 B 20170908; DK 1966393 T3 20121008; DK 2789696 T3 20160229; DK 3404114 T3 20210628; EP 1966393 A1 20080910; EP 1966393 B1 20120725; EP 2363504 A1 20110907; EP 2789696 A1 20141015; EP 2789696 B1 20151216; EP 3045544 A1 20160720; EP 3404114 A1 20181121; EP 3404114 B1 20210505; ES 2391837 T3 20121130; ES 2558124 T3 20160202; ES 2882401 T3 20211201; HK 1200497 A1 20150807; JP 2009520497 A 20090528; JP 5452021 B2 20140326; PL 2789696 T3 20160630; US 10106850 B2 20181023; US 11008615 B2 20210518; US 2009269749 A1 20091029; US 2013059739 A1 20130307; US 2014295428 A1 20141002; US 2014315728 A1 20141023; US 2015159217 A1 20150611; US 2015344946 A1 20151203; US 2016258013 A1 20160908; US 2017081718 A1 20170323; US 2017356042 A1 20171214; US 2019144938 A1 20190516; US 2020181698 A1 20200611; US 8481257 B2 20130709; US 8815512 B2 20140826; US 8911945 B2 20141216; US 9062348 B1 20150623; US 9328383 B2 20160503; US 9334536 B2 20160510; US 9702004 B2 20170711; US 9777324 B2 20171003

DOCDB simple family (application)

NL 2006000648 W 20061220; CN 200680051561 A 20061220; CN 201410177894 A 20061220; DK 06835670 T 20061220; DK 14166884 T 20061220; DK 18174221 T 20061220; EP 06835670 A 20061220; EP 10186841 A 20061220; EP 14166884 A 20061220; EP 15199849 A 20061220; EP 18174221 A 20061220; ES 06835670 T 20061220; ES 14166884 T 20061220; ES 18174221 T 20061220; HK 15100765 A 20150123; JP 2008547127 A 20061220; PL 14166884 T 20061220; US 15804006 A 20061220; US 201213666385 A 20121101; US 201414274591 A 20140509; US 201414318352 A 20140627; US 201414550805 A 20141121; US 201514699891 A 20150429; US 201615136224 A 20160422; US 201615366417 A 20161201; US 201715683252 A 20170822; US 201816165645 A 20181019; US 201916517502 A 20190719