EP 2902933 A3 20151223 - Bambam: parallel comparative analysis of high-throughput sequencing data
Title (en)
Bambam: parallel comparative analysis of high-throughput sequencing data
Title (de)
Bambam: Parallele vergleichende Analyse von Hochdurchsatz-Sequenzierungsdaten
Title (fr)
Bambam Analyse comparative parallèle de données de séquençage à rendement élevé
Publication
Application
Priority
- US 201113373550 A 20111118
- EP 11875775 A 20111220
Abstract (en)
[origin: US2012066001A1] A differential sequence object is constructed on the basis of alignment of sub-strings via incremental synchronization of sequence strings using known positions of the sub-strings relative to a reference genome sequence. An output file is then generated that comprises only relevant changes with respect to the reference genome.
IPC 8 full level
G16B 50/30 (2019.01); G16B 20/10 (2019.01); G16B 20/20 (2019.01); G16B 20/40 (2019.01); G16B 30/10 (2019.01); G16H 10/40 (2018.01); G16H 10/60 (2018.01)
CPC (source: CN EP KR US)
G06F 3/04845 (2013.01 - US); G06F 40/169 (2020.01 - US); G06N 7/01 (2023.01 - US); G06Q 50/24 (2021.08 - CN); G16B 20/00 (2019.01 - CN EP US); G16B 20/10 (2019.01 - CN EP KR US); G16B 20/20 (2019.01 - CN EP KR US); G16B 20/40 (2019.01 - CN EP KR US); G16B 30/00 (2019.01 - CN EP KR US); G16B 30/10 (2019.01 - CN EP KR US); G16B 40/00 (2019.01 - KR); G16B 50/00 (2019.01 - CN EP KR US); G16B 50/30 (2019.01 - CN EP KR US); G16B 99/00 (2019.01 - KR); G16H 10/00 (2017.12 - KR); G16H 10/40 (2017.12 - EP US); G16H 10/60 (2017.12 - EP US); G16H 50/20 (2017.12 - EP US); G16H 50/30 (2017.12 - EP US); Y02A 90/10 (2017.12 - EP US)
Citation (search report)
No Search
Designated contracting state (EPC)
AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR
DOCDB simple family (publication)
US 2012066001 A1 20120315; US 9646134 B2 20170509; AU 2011381073 A1 20140522; CA 2854084 A1 20130523; CA 2854084 C 20191105; CA 3056128 A1 20130523; CA 3056128 C 20210720; CN 104067278 A 20140924; CN 104067278 B 20170419; CN 106971089 A 20170721; CN 106971089 B 20201204; EP 2780851 A1 20140924; EP 2780851 A4 20150930; EP 2902933 A2 20150805; EP 2902933 A3 20151223; IL 232512 A0 20140630; JP 2014533858 A 20141215; JP 2016186801 A 20161027; JP 2018067350 A 20180426; JP 2019164818 A 20190926; JP 5953379 B2 20160720; JP 6274539 B2 20180207; JP 6539835 B2 20190710; JP 6776404 B2 20201028; KR 101663951 B1 20161012; KR 101947225 B1 20190212; KR 102041764 B1 20191107; KR 102175660 B1 20201106; KR 20140089609 A 20140715; KR 20150015047 A 20150209; KR 20160066560 A 20160610; KR 20190125548 A 20191106; US 10242155 B2 20190326; US 10726945 B2 20200728; US 2015094963 A1 20150402; US 2017206316 A1 20170720; US 2020279617 A1 20200903; WO 2013074058 A1 20130523
DOCDB simple family (application)
US 201113373550 A 20111118; AU 2011381073 A 20111220; CA 2854084 A 20111220; CA 3056128 A 20111220; CN 201180076272 A 20111220; CN 201710190109 A 20111220; EP 11875775 A 20111220; EP 15159392 A 20111220; IL 23251214 A 20140508; JP 2014542280 A 20111220; JP 2016116859 A 20160613; JP 2017251051 A 20171227; JP 2019089447 A 20190510; KR 20147016109 A 20111220; KR 20157001305 A 20111220; KR 20167014294 A 20111220; KR 20197032370 A 20111220; US 2011001996 W 20111220; US 201414567774 A 20141211; US 201715476337 A 20170331; US 202016874470 A 20200514