Global Patent Index - EP 3512421 A4

EP 3512421 A4 20210811 - METHOD AND SYSTEM FOR PANEL CHARACTERIZATIONS

Title (en)

METHOD AND SYSTEM FOR PANEL CHARACTERIZATIONS

Title (de)

VERFAHREN UND SYSTEME ZUR PANELCHARAKTERISIERUNG

Title (fr)

MÉTHODE ET SYSTÈME DE CARACTÉRISATIONS DE PANEL

Publication

EP 3512421 A4 20210811 (EN)

Application

EP 17851735 A 20170918

Priority

  • US 201662395939 P 20160916
  • US 201715606743 A 20170526
  • US 201762520058 P 20170615
  • US 201762525379 P 20170627
  • US 2017052098 W 20170918

Abstract (en)

[origin: WO2018053443A1] Embodiments of a system and method for characterizing a panel of conditions associated with a set of taxa related to microorganisms can include a taxonomic database including reference microbiome features for the set of taxa associated with the panel of conditions; a handling operable to collect a container including biological material from a user, the handling system comprising a sequencer system operable to determine a microorganism sequence dataset; and a panel characterization system operable to: determine user microbiome features for the set of taxa for the user based on the microorganism sequence dataset, generate a comparison between the user microbiome features and the reference microbiome features, and determine a panel characterization for the panel of conditions for the user based on the comparison; and a treatment system operable to promote a therapy for a condition of the panel of conditions based on the panel characterization.

IPC 8 full level

G01N 33/50 (2006.01); A61B 1/00 (2006.01); A61B 5/05 (2021.01); C12Q 1/04 (2006.01); G16B 40/10 (2019.01); G16H 50/20 (2018.01)

CPC (source: EP KR)

A61B 1/00 (2013.01 - KR); A61P 1/04 (2017.12 - EP); A61P 1/10 (2017.12 - EP); A61P 1/12 (2017.12 - EP); A61P 1/14 (2017.12 - EP); A61P 3/04 (2017.12 - EP); A61P 3/10 (2017.12 - EP); A61P 9/00 (2017.12 - EP); A61P 13/12 (2017.12 - EP); A61P 25/22 (2017.12 - EP); A61P 29/00 (2017.12 - EP); C12Q 1/04 (2013.01 - EP); G01N 33/50 (2013.01 - EP); G16B 20/00 (2019.01 - EP); G16B 25/10 (2019.01 - KR); G16B 30/10 (2019.01 - KR); G16B 40/10 (2019.01 - EP); G16B 50/30 (2019.01 - EP); G16H 50/20 (2017.12 - EP KR); G16H 50/30 (2017.12 - KR); Y02A 90/10 (2017.12 - EP)

Citation (search report)

  • [I] WO 2015112352 A2 20150730 - UBIOME INC [US]
  • [X] WO 2016065075 A1 20160428 - UBIOME INC [US]
  • [XP] WO 2016168352 A1 20161020 - UBIOME INC [US]
  • [Y] NADJA B. KRISTENSEN ET AL: "Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials", GENOME MEDICINE, vol. 8, no. 1, 10 May 2016 (2016-05-10), XP055439213, DOI: 10.1186/s13073-016-0300-5
  • [Y] THOMAS VINCENT ET AL: "Fecal microbiota analysis: an overview of sample collection methods and sequencing strategies", FUTURE MICROBIOLOGY, FUTURE MEDICINE LTD, GB, vol. 10, no. 9, 1 January 2015 (2015-01-01), pages 1485 - 1504, XP009194769, ISSN: 1746-0913, DOI: 10.2217/FMB.15.87
  • [Y] OTT STEPHAN J ET AL: "Quantification of intestinal bacterial populations by real-time PCR with a universal primer set and minor groove binder probes: a global approach to the enteric flora", JOURNAL OF CLINICAL MICROBIOLOGY, AMERICAN SOCIETY FOR MICROBIOLOGY, US, vol. 42, no. 6, 1 June 2004 (2004-06-01), pages 2566 - 2572, XP002428203, ISSN: 0095-1137, DOI: 10.1128/JCM.42.6.2566-2572.2004
  • [Y] PORETSKY RACHEL ET AL: "Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics", PLOS ONE, vol. 9, no. 4, 8 April 2014 (2014-04-08), pages e93827, XP055820823, Retrieved from the Internet <URL:https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093827> DOI: 10.1371/journal.pone.0093827
  • [Y] CHIH-MIN CHIU ET AL: "Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing", JOURNAL OF CLINICAL BIOINFORMATICS, BIOMED CENTRAL LTD, LONDON, UK, vol. 4, no. 1, 13 January 2014 (2014-01-13), pages 1, XP021175161, ISSN: 2043-9113, DOI: 10.1186/2043-9113-4-1
  • [Y] SIMEONI UMBERTO ET AL: "Gut microbiota analysis reveals a marked shift to bifidobacteria by a a starter infant formula containing a synbiotic of bovine milk-derived a oligosaccharides and Bifidobacterium animalis subsp lactisCNCM I-3446", ENVIRONMENTAL MICROBIOLOGY, vol. 18, no. 7, 2 December 2015 (2015-12-02), pages 2185 - 2195, XP055820498, Retrieved from the Internet <URL:https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.13108> [retrieved on 20210702], DOI: 10.1111/1462-2920.13144
  • [XP] ALMONACID DANIEL E. ET AL: "16S rRNA gene sequencing as a clinical diagnostic aid for gastroitestinal related conditions", BIORXIV, 31 October 2016 (2016-10-31), XP055820608, Retrieved from the Internet <URL:https://www.biorxiv.org/content/10.1101/084657v1.> [retrieved on 20210702], DOI: 10.1101/084657
  • [XP] ALMONACID DANIEL E ET AL: "16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome", PLOS ONE, 3 May 2017 (2017-05-03), pages e0176555, XP055820597, Retrieved from the Internet <URL:https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0176555> [retrieved on 20210702], DOI: 10.1371/journal.pone.0176555
  • See references of WO 2018053443A1

Designated contracting state (EPC)

AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR

DOCDB simple family (publication)

WO 2018053443 A1 20180322; AU 2017326564 A1 20190328; BR 112019005025 A2 20190618; BR 112019005025 A8 20230321; CA 3036994 A1 20180322; CN 109715059 A 20190503; CO 2019003713 A2 20190430; EP 3512421 A1 20190724; EP 3512421 A4 20210811; JP 2019528729 A 20191017; JP 7114091 B2 20220808; KR 102486181 B1 20230106; KR 20190055127 A 20190522; SG 11201901726Q A 20190328; ZA 201901371 B 20191127

DOCDB simple family (application)

US 2017052098 W 20170918; AU 2017326564 A 20170918; BR 112019005025 A 20170918; CA 3036994 A 20170918; CN 201780057144 A 20170918; CO 2019003713 A 20190412; EP 17851735 A 20170918; JP 2019514295 A 20170918; KR 20197010012 A 20170918; SG 11201901726Q A 20170918; ZA 201901371 A 20190305