[0001] This invention relates to novel sparingly soluble salts and immobilized ionic complexes
of the meriquinone oxidation products of benzidine and substituted benzidines and
to their use as analytical visualization signals in a wide array of chemical, biological
and clinical tests.
[0002] Peroxidative oxidation usually occurs according to one or the other of the following
reaction schemes: AH₂ + ROOH→A + ROH + H₂O; H₂O + AH₂ + ROOH→AH₂⁺² + ROH + 2OH⁻; in
which AH₂ is a hydrogen donor and ROOH is a hydroperoxide. (Which reaction is preferred
depends on the base strength of A and on the reaction pH.) Over the years, many analyses
for peroxidative activity have been developed. Some are intended to identify, locate
or quantitate peroxides either as compounds of interest or, in the case of hydrogen
peroxide, as the product of oxidations by molecular oxygen, especially those catalyzed
by a class of enzymes known as oxidases. Other such methods are intended to identify,
locate, or quantitate catalysts of peroxidative activity, such as transition-metal
ions, hemes, hemoproteins, and the peroxidase enzymes. Among the latter, two classes
of use predominate over all others; (a) the analysis of hemoglobin in forensic specimens,
feces, urine, and cell-free blood plasma or serum, and (b) the analysis of peroxidase
employed as a label in binding assays.
[0003] The first class of assays is not very sensitive, because non-peroxidase hemoproteins
and isolated hemes are inefficient peroxidative catalysts. Furthermore, they are subject
to interference from contaminating transition-metal ions, principally iron and copper,
and occasionally from contaminating peroxidase enzymes. Nevertheless, they are so
simple and their diagnostic relevance is so great that they are popular in their respective
fields of use. For example, many commercial clinical tests for occult blood in fecal
material exist for screening for cancer and pre-cancerous growths in the colon.
[0004] The second class of assays can be extremely sensitive, because horseradish peroxidase
not only is much more efficient catalytically than other hemoproteins, but also is
one of the most efficient enzymes capable of producing colored products suitable for
spectrophotometric or fluorometric analysis. They also can be highly specific, because
peroxidase enzymes occur naturally in relatively few clinical or biological samples,
and the potential transition-metal-ion interference usually can be blocked with chelating
agents.
[0005] A key variable in the design of peroxidase-linked assays is the choice of chromogenic
substrate, for several reasons:
(a) Enzyme catalytic efficiency ranges over several orders of magnitude, depending
on the structure of the hydrogen donor.
(b) Some spectral changes accompanying oxidation are more sensitive than others, having
larger extinction coefficient changes or occurring in more easily detected spectral
regions.
(c) Some colored products are soluble; others are insoluble. The former are desirable
for instrumental analyses of product absorbance or fluorescence in solution. The latter
are essential for assays in which the signal should be localized or trapped in a gel
or on a solid surface.
(d) Many peroxidase substrates, phenols and aromatic amines are known or thought to
be mutagenic or carcinogenic.
[0006] Benzidine and several substituted benzidine derivatives were developed as peroxidase
substrates consumed with higher turnover numbers than many other aromatic amines and
phenols, giving convenient and large absorbance changes in the visible spectral region.
Most can give water-insoluble products, usually polymeric in nature. However, most
are known or thought to be carcinogenic or mutagenic. 3,3',5,5'-tetramethylbenzidine
(TMB) was developed as a non-carcinogenic peroxidase substrate (e.g., Holland et al.
(1974)
Tetrahedron,
30:3299-3302). For this reason, and because it also appears to be one of the most sensitive
peroxidase substrates, it has rapidly found widespread use (a) in enzyme immunoassays
in which the product color is measured spectrophotometrically in solution (e.g., Bos
et al. (1981)
Journal of Immunoassay,
2:187-204), (b) in solution-phase spectrophotometric determination of hemoglobin (e.g.,
Liem et al. (1979)
Analytical Biochemistry,
98:388-395), (c) in solid-phase spectrophotometric determination of hemoglobin (e.g.,
Burkhardt et al. (1981) European Patent Application 81104634.1; U.S. Patent 4,447,542)
or drugs (via peroxidase-linked specific binding assay, U.S. Patent 4,447,529), (d)
in detection of hemoglobin, other hemoproteins, or oxidases in electrophoretic gels
(e.g., Thomas et al. (1976)
Analytical Biochemistry,
75:168-176), and (e) in neurohistochemistry (e.g., Mesulam (1978)
Journal of Histochemistry and Cytochemistry,
26:106-117).
[0007] Conspicuously scarce in the documentary record are reports of TMB as a peroxidase
substrate in common enzyme-linked solid-phase assays such as immunohistochemical staining,
Western blots, Southern blots, or immunodot blots, where less sensitive and more hazardous
HRP substrates forming insoluble products have been used (e.g., Hawkes et al. (1982)
Analytical Biochemistry,
119:142-147). Although there are no published applications of TMB to Southern, Northern,
Western, or immunodot blots, Trojanowski et al. (1983)
Journal of Histochemistry and Cytochemistry,
31:1217-1223 reported its immunohistochemical use in a comparison with several other
chromogens which clearly form insoluble products: diaminobenzidine, aminoethylcarbazole,
o-tolidine, and a mixture of paraphenylene diamine and pyrocatechol. However, TMB
was judged to be one of the least effective substrates, being less sensitive than
diaminobenzidine (despite the opposite finding in neurohistochemical studies) and
giving crystals sufficiently large to obscure microstructural detail.
[0008] In several of the other solid-phase or gel-phase studies cited above, the TMB signal
was also not completely satisfactory. Fujii et al. (1984)
Neuroscience Research,
1:153-156 cited the instability of the TMB product in the absence of special fixatives,
and Olsson et al. (1983)
J. Neuroscience Methods,
7:49-59 and many other neurohistochemists mentioned the tendency of the TMB product
to form crystals so large that they obscured fine detail. In an histochemical effort
to observe the localization of native peroxidase in cross-sections of plant stems,
the TMB-generated color was observed to be unstable (Imberty et al. (1984)
Plant Science Letters,
35:103-108). Broyles et al. (1979)
Analytical Biochemistry,
94:211-219 found the TMB product to be mobile in the stained electrophoretic gel, frustrating
either quantitation or maintenance of a permanent record. Both Broyles et al. and
Francis et al. (1984)
Analytical Biochemistry,
136:509-514 noted a colored background in TMB-stained gels which must represent peroxidative
catalysis by impurities in the gel or the reagents. In the other cited class of solid-phase
assays of hemoglobin or peroxidase (e.g., Burkhardt et al.,
supra), the assay interval was so short that physical form or lability of the TMB product
would be unlikely to influence the outcome.
[0009] Removal of two electrons from benzidine or a substituted benzidine (e.g., by peroxidative
oxidation) creates an oxidized product called quinone diimine. The blue reaction product
of TMB oxidation has been reported to exist largely as a charge-transfer complex between
one TMB molecule and one quinone diimine, having an average oxidation state halfway
between those of its two components and called a meriquinone (Josephy et al. (1982)
J. Biol. Chem.,
257:3668-3675). In that paper, both the meriquinone and the quinone diimine were represented
a neutral molecules, as had also been the case in an earlier paper on the mechanism
of ortho-dianisidine oxidation (Claiborn and Fridovich (1979)
Biochemistry,
18:2324-2329). Later the quinone diimine and meriquinone formed from benzidine oxidation
were drawn as dications (Josephy et al. (1983)
J. Biol. Chem.,
258:5561-5569), although no pK
a values for meriquinones or quinone diimines have been reported.
[0010] Before the discovery of TMB, Straus (1963)
Journal of Histochemistry and Cytochemistry,
12:462-469 observed that unspecified buffer salts caused the blue product of benzidine
oxidation (meriquinone) to form crystals of undetermined composition. Other solid-phase
or gel-phase applications of TMB as a peroxidative substrate, cited above, used buffers
the anions of which (acetate, citrate and phosphate) applicants have shown to form
relatively soluble salts of the TMB meriquinone. While Mesulam,
supra, Olsson et al.,
supra, and other neurohistochemists reported the deposition of the blue product of TMB
oxidation as crystals (of undetermined composition) from acetate and phosphate buffers
in neurohistochemical application, most of the cited references on solid-phase and
gel-phase applications disclose no clear evidence of product precipitation or immobilization.
In fact, the opposite result was reported by Broyles et al.,
supra. As recently as 1983, Josephy et al (
Journal of Biological Chemistry,
285:5561-5569) cited the observation of Broyles et al. regarding unsatisfactory solubility
properties of the TMB meriquinone. Neurohistochemists have used methyl salicylate
(Adams (1980)
Neuroscience Letters,
17:7-9), ammonium molybdate (Fujii et al.,
supra), potassium ferricyanide (Albers et al. (1984)
Journal of Histochemistry and Cytochemistry,
32:1005-1008), or sodium nitroprusside (e.g., Mesulam,
supra) to stabilize the blue TMB product. However, the molecular basis of these effects
is unknown. Methyl salicylate is non-ionic in the pH range used, and the other three
stabilizers can undergo reduction reactions or serve as sources of anions which might
precipitate the meriquinone. U.S. Patent No. 4,525,452 describes the isolation of
unoxidized TMB as a solid sulfate or dichloride salt, but no reference is made to
oxidized TMB.
[0011] The principal reported difficulties in applying TMB as a peroxidative substrate in
solid-phase or gel-phase assays are (a) excessive solubility of the colored reaction
product, (b) lack of control of crystallization in the neurological and immunohistochemical
staining applications where insoluble product is obtained but large crystals can obscure
cellular microstructures, (c) excessive background oxidation of TMB by contaminants,
and (d) "fading" of the meriquinone color for unspecified reasons.
[0012] Van Duijn
Receuil des Travaux Chimiques des Pays-Bas (1955)
74:771-778 disclosed that inorganic Cl⁻ and SO₄⁻² salts precipitated the blue meriquinone
intermediate of benzidine oxidation. The precipitates were not shown to be ionic nor
precipitation shown to be complete. In addition, no quantitation of meriquinone solubility
was made. Weis
Chemistry and Industry (1938)
16:517-518 disclosed non- experimental suggestions that the blue compounds observed
by Schlenk and by Barzilowsky were semiquinones, not charge-transfer complex meriquinones,
that the semiquinones should be mono-cations, and that the blue solids obtained with
various anions should be salts. Schlenk
Annalen der Chemie (1908)
363:313-339 disclosed blue chloride "salts" of the meriquinones of 3,3'-dichloro-5,5'-dimethylbenzidine
and 3,3'-dimethylbenzidine precipitated from water. No measurement of solubility
or proof of the ionic nature of the solids was obtained. Barzilowsky
Chemikes-Zeitung (1905)
29:292 disclosed the salt of ferrocyanide tetraanion and two meriquinone dications.
No measurement of solubility was made.
[0013] These four publications and that of Straus,
supra, show that although the term, "salt", has been used to describe the blue precipitate
formed when certain inorganic or unspecified salts were added in high or unspecified
concentration to the blue product of oxidation of benzidine or several substituted
benzidines, there has been no demonstration of the generality of the phenomenon, of
the quantitative controllability of the phenomenon, of the solubilities of the products,
or of the ionic nature of the product. The focus of this early work was on the structures
of the blue dyes, but there was not even consensus on their chemical structure.
[0014] Although benzidine and substituted benzidines are most commonly used as chromogenic
electron donors in oxidation by peroxide, at lest some oxidase enzymes catalyze TMB
oxidation by molecular oxygen (Miller and Nicholas (1984)
Analytical Biochemistry,
140:577-580). This fact is a reminder that improvements in the technology of visualizing
oxidative reactions with benzidine or substituted benzidines have broad applicability
beyond the field of peroxidase-based assays.
[0015] The present invention overcomes the above difficulties of applying benzidine or substituted
benzidines to solid-phase and gel-phase assays in all oxidations which generate meriquinones
from these compounds, including but not limited to peroxidative oxidations. It permits
controllable precipitation of the meriquinone as solid salts of a wide range of anions,
which salts under defined conditions are less soluble than the salts of acetate and
phosphate ions commonly used in buffers for meriquinone peroxidative staining applications.
Solubility is controlled by temperature, pH, anion concentration, total ionic strength,
and choice of anion.
[0016] The invention also permits the formation of complexes between meriquinones and polymeric
anions. Crystalline salts as agents of detection may not adhere well to the surface
of solid phases, so that the analytical signal is mechanically labile, and may disrupt
important structures in histochemical and cytochemical analyses. Complexes between
meriquinone cations and polymeric anions can solve this problem if the polymeric anion
is adsorbed to, covalently attached to, or entrapped in a solid or gel phase. The
formation of immobilized complex ions between meriquinone and polymorphic anions can
reduce meriquinone solubility as effectively as does salt formation and create a more
permanent localized color. Furthermore, such polymers cannot crystallize, and so should
not disrupt microstructure in cytochemical and histochemical applications.
[0017] Also, precipitation of the salts and immobilization of the complexes permits localization
of the meriquinone analytical signal on the surface of a solid phase or in a gel phase,
thereby dramatically lowering the detection limits of solid- and gel-phase assays
to provide increased quantitative sensitivity and qualitative discriminatory power
over previously disclosed analyses. The value of this invention is most evident when
TMB is used as a peroxidative electron donor. TMB is uniquely valuable as a chromogen
because of its negligible carcinogenicity and high reaction rate, but hitherto has
been of limited value in solid-phase and gel-phase assays because of difficulty in
immobilizing the reaction product. As a result of this invention, TMB staining of
peroxidative activity can be extended to Southern, Western, Northern, nucleic acid
hybridization dot, and immunodot blots, and to immunohistochemical and immunocytochemical
staining, analyses in which the added sensitivity of TMB (relative to the other chromogenic
peroxidase substrates) is especially valuable for reducing detection limits. TMB staining
of histochemical preparations may not be possible with greater permanence and fewer
crystal-induced artifacts than previously were seen.
[0018] Finally, there is growing use in clinical diagnostics of "rapid" immunodiagnostic
kits in which immune reactions are performed and detected in or above a filtration
membrane and excess reagents are washed through the membrane to terminate reactions
and to minimize analytical background. Trapping of the meriquinone as a crystalline
salt or immobilized complex ion in or on the membrane is ideally suited to this application.
[0019] Specifically, the present invention relates to compositions of matter useful for
visualizing biological materials which compositions comprise an immobilized or dissolved
complex of a polymeric anion and the meriquinone of benzidine or a substituted benzidine.
In another aspect, the present invention relates to compositions of matter useful
for visualizing biological materials which compositions comprise a solid salt of the
meriquinone of benzidine or a substituted benzidine, wherein the anion of the salt
is the conjugate base of an unsaturated or an aromatic organic acid.
[0020] The complex ion is formed by binding of the meriquinone to any polymeric anion and
has a color characteristic of the meriquinone, of the polymeric anion, and of the
mole ratio of meriquinone to polymeric anion. Although often soluble in aqueous solvents,
the complex ion can be made to form amorphous insoluble colored deposits either through
adsorption to a wide range of solid or suspended materials or through attainment of
approximate equivalence between meriquinone positive charges and polymeric anion negative
charges. Specific examples of polymeric anions include dextran sulfate, polyphosphate,
polyanethole sulfonate, polyacrylate, polymethacrylate, and a wide range of ion exchange
adsorbents, but the composition of the complex ion is quite variable, allowing a wide
range of degree of polymerization for the polymeric anion as well as a wide range
of molar ratios of meriquinone to polymeric anion.
[0021] The solid salt is formed by reaction of charge-equivalent quantities of the meriquinone
and a specific anion of limited size and charge, has a color characteristic of the
meriquinone and of the anion, usually is crystalline, and usually will have a solubility
below 10⁻³
M when equilibrated with water in the absence of excess anion. The specific anions
claimed as components of such salts include malate, tartarate, succinate, malonate,
glutarate, oxalate, formate, pyrophosphate, isocitrate, ethylenedinitrilotetraacetate,
1,2,3,4-butane tetracarboxylate, fumarate, maleate, phthalate, isophthalate, terephthalate,
benzoate, hemimellitate, trimellitate, trimesate, pyromellitate, mellitate, and mesaconate.
The specific anions include all anions containing aromatic groups or unsaturated carbon
chains. In addition, the anion may be sulfate, citrate, nitrate and halide (e.g.,
chloride, bromide, iodide, fluoride), if the substituted benzidine is TMB.
[0022] In another aspect, this invention relates to a solid phase or gel containing one
of the compositions described above.
[0023] Preferably, the benzidine derivative is TMB. Also preferably the oxidized benzidine
or its derivative is formed in the presence of a peroxide and a catalyst which is
a peroxidase, a hemoprotein, or a protein-free iron porphyrin.
[0024] In a use aspect, the invention relates to analytical processes wherein a visual signal
is generated (and sometimes later dissipated) by controlling the aqueous solubility
of the meriquinone of benzidine or a substituted benzidine. Control is exerted primarily
by addition of a quantity of polymeric anion or anion sufficient to achieve a meriquinone
solubility below 10⁻⁵
M, creating a precipitated or immobilized deposit with a characteristic color. A wider
range of anions than specified above is effective for this task, each having a characteristic
minimum effective concentration. As solubility is controlled by temperature, pH, anion
concentration, total ionic strength, and the identity and concentration of any organic
cosolvent, as well as by identity of the meriquinone and anion, there are many ways
to achieve a desired solubility, including ways to dissolve the deposit (e.g., by
lowering the concentration of precipitating anion or increasing the total ionic strength).
[0025] Preferably, the analytical process comprises oxidizing benzidine or a substituted
benzidine to the meriquinone thereof at a pH of about 3 to 7, and in the presence
of an effective (precipitating or immobilizing) concentration of an anion or polymeric
anion, an oxidation catalyst, and an effective amount of oxidant, thereby forming
a solid salt or immobilized complex of said anion or polymeric anion and said meriquinone
having a controllable solubility as given above and characteristic color and solid
form. The pH is preferably 3.5 to 4.5 if the oxidation catalyst is horseradish peroxidase
and the benzidine derivative it TMB, and the TMB concentration is preferably near
the solubility limit for the specified pH, i.e., is within a factor of two of the
solubility limit of TMB.
[0026] Preferably, the oxidation catalyst is bound to a nucleic acid the sequence of which
is complementary to a DNA sequence from the chromosome(s) of an organism or is bound
to a non-catalytic protein such as an antibody, an antigen, avidin, a lectin, or Staphylococcal
Protein A. Also preferably the visualization is achieved on a Southern blot, on a
Northern blot, on a DNA or RNA dot blot, on a Western blot, on an antigen or antibody
dot blot, in an immunodiagnostic or nucleic acid probes assay device, in a gel or
on a paper or plastic strip (e.g., as used in electrophoresis, chromatography, or
isoelectric focusing), on a nutrient gel plate containing cell colonies or on a mounted
histological section or cytological smear.
[0027] In another embodiment, the invention relates to a process for visualizing a biological
material contained in or on a test sample selected from the group consisting of a
solid phase, a gel, a dissolved or suspended mixture containing complementary antibody
and antigen, and a dissolved or suspended mixture containing complementary single-stranded
nucleic acids, which process comprises forming the meriquinone solid salt or immobilized
complex having a controllable solubility as given above and observing the resulting
colored deposit.
[0028] In another embodiment, the invention relates to a process for detecting the presence
of one or more antigens or antibodies in a liquid test sample, which process comprises:
(a) incubating the test sample or an extract thereof with a surface to capture the
antigen or antibody and with a peroxidase-labeled antibody or antigen which binds
to the antigen or antibody to be detected, these incubations occurring separately,
in either order, or together;
(b) filtering the incubation mixture of step (a);
(c) washing the filter of step (b);
(d) incubating the washed product of step (c) with a benzidine or substituted benzidine
and an effective concentration of an effective anion or polymeric anion to form a
solid salt or immobilized complex with the meriquinone of said benzidine or substituted
benzidine;
(e) filtering and washing the incubate of step (d); and
(f) detecting the formation of said solid salt or immobilized complex of said anion
or polymeric anion and the meriquinone of said benzidine or substituted benzidine,
wherein said formation indicates the presence of said antibody or antigen.
[0029] The incubations of step (a) may take place together or separately in either order.
[0030] Preferably, the capturing surface is a filter membrane or beads suspended in the
test sample above the filter membrane capable of capturing the analyte. Preferably
steps (d) and (e) are carried out at a low ionic strength and a pH of 3.5-5.5. Alternatively,
after step (f) the mixture is filtered and washed at a high ionic strength to remove
the meriquinone, a peroxidase-labeled antibody or antigen different from that used
previously in step (a) is incubated with the washed mixture to detect a different
region of the antigen or antibody, or a different antigen or antibody in the test
sample, the mixture is filtered, washed and incubated with benzidine or a substituted
benzidine and an effective anion or polymeric anion, the resulting incubation mixture
is filtered and washed, and the formation of the salt or complex is detected. Because
of the control over meriquinone solubility introduced by this invention, such reprobing
of an immunoassay test sample can be repeated many times.
[0031] Also within the scope of this invention are kits, generally in multicontainer format,
for visualizing a nucleic acid, antigen or antibody in certain assay formats, which
kits include instructions for how to precipitate or immobilize the meriquinone with
an anion or polymeric anion and may supply the precipitant. The kits may also include
the benzidine or substituted benzidine, and a detecting compound which specifically
interacts with (binds to) the nucleic acid, antigen or antibody, which detecting compound
is detected either directly through an attached peroxidase enzyme or indirectly through
use of a compound which specifically interacts with the detecting compound and is
conjugated to a peroxidase. An immunodiagnostic kit may also include a filter membrane,
anionic latex beads, an anionic dipstick, or an incubation buffer containing an anion
or polymeric anion which will precipitate the meriquinone of benzidine or substituted
benzidine. If the solid support is anionic, the buffer need not contain a precipitant.
[0032] The meriquinones are generally more highly colored than the benzidines, which are
commonly used reactants in peroxidative transformations catalyzed by peroxidase enzymes
and by various heme proteins or protein-free hemes. Therefore, meriquinone formation
in the presence of a peroxide indicates the simultaneous presence of a peroxidase
of heme-containing compound, provided that non-enzymatic catalysis by certain transition-metal
ions is prevented. Alternatively, meriquinone formation in the presence of a peroxidase,
heme compound, or certain transition-metal ions indicates the simultaneous presence
of a peroxide.
[0033] In applications where absence of peroxidase enzymes and hemes is assured, meriquinone
formation in the presence of a benzidine and a peroxide can be used to detect the
presence of certain transition metal ions with oxidation-reduction activity, chiefly
the ions of iron, cobalt, nickel, manganese, chromium, copper, molybdenum, rhodium,
ruthenium, platinum, and palladium. In addition, kits for detecting hemoglobin or
heme are included within the scope of the invention. Analyses of peroxides and heme
proteins (especially hemoglobin from blood) have obvious value in chemistry, biology,
medicine, and forensic science. Peroxidases are less commonly the subject of direct
study than tools in the highly sensitive analysis of any other compound for which
a binding assay can be devised or the analysis of topological connectedness in compartmented
systems, such as tissues, where injection of peroxidase into one part of a compartment
is followed by its diffusion into all parts of the compartment but not into adjacent
compartments.
[0034] Figure 1 depicts the coupled oxidation, charge-transfer complex formation, conjugation,
and salt precipitation reactions which occur when benzidine or a substituted benzidine,
such as TMB, is oxidized in the presence of a precipitating anion. It is drawn for
a diprotic buffer acid, the di-anion of which forms an insoluble salt with the meriquinone.
Similar networks can be drawn for buffer acids and precipitating anions with different
stoichiometries.
[0035] Figure 2 graphs log meriquinone solubility against log anion concentration for seven
precipitating anions and the meriquinone of TMB. The stoichiometries of the meriquinone
salts can be deduced from the slopes of these plots. In the figure, A is fumarate,
B is maleate, C is oxalate, D is succinate, E is sulfate, F is pyrophosphate, and
G is citrate.
[0036] Figure 3 represents a Western blot comparing TMB and diaminobenzidine (DAB) as substrates
for visualizing HRP-labeled antibody against p21 ras protein.
[0037] As used herein, "substituted benzidine" refers to any compound of the general formula:
where R₁, R₂ and R₃ are independently taken from the following groups: H-, CH₃-,
NH₂-, CH₃O-, CH₃(CH₂)
n-, CH₃(CH₂)
n-O-, CN-, NO₂-, F-, Cl-, Br-, or I-, where n is an integer of from 1 to 10, preferably
1 or 2, and where R₁, R₂ and R₃ are not all H-. (In the parent compound, benzidine,
R₁, R₂, and R₃ are all H-.) Representative derivatives include the following: 3,3',5,5'-tetramethylbenzidine,
or TMB, (R₁ is H- and R₂ and R₃ are CH₃-), ortho-dianisidine (R₁ and R₂ are H- and
R₃ is CH₃O-), ortho-tolidine (R₁ and R₂ are H- and R₃ is CH₃-), and diaminobenzidine
(R₁ and R₂ are H- and R₃ is NH₂-). Preferably R₁, R₂ and R₃ are independently chosen
from H-, CH₃-, CH₃O- , and NH₂-, and most preferably R₁ is H- and R₂ and R₃ are CH₃-.
[0038] As used herein, "quinone diimine" of benzidine or substituted benzidine refers to
any compound of one of the general formulae:
where R₁, R₂ and R₃ are specified above, and R₁, R₂ and R₃ can all be H- (if benzidine).
If R₁ is H-, at pH values above the pK
a values of one or both of the iminium groups, the molecule will have lost one or two
protons from the nitrogen atoms, having a net charge of +1 or 0, respectively.
[0039] As used herein, "meriquinone" of benzidine or substituted benzidine refers to a molecule
having an oxidation state intermediate between that of the benzidine and its quinone
diimine and consisting of a 1:1 noncovalent charge-transfer complex between the benzidine
or substituted benzidine and its quinone diimine. Without adherence to any particular
theory, it is believed, in view of the data found herein showing formation of crystalline
salts of defined compositions with a wide range of anions, that in the pH region of
3-7 the meriquinone exists primarily as a dication. The equilibrium constant for formation
of this complex normally is so favorable that most quinone diimine formed by oxidation
of benzidine or a substituted benzidine will immediately form the meriquinone as long
as unreacted parent compound is present.
[0040] As used herein, "peroxide" refers to any compound containing the peroxide (-O-O-)
group, and preferably to any compound containing the hydroperoxide (-O-O-H) group.
Examples of peroxides include, e.g., hydrogen peroxide, methyl peroxide, ethyl peroxide,
isopropyl peroxide, tert-butyl peroxide, substituted cumene peroxides, urea hydrogen
peroxide, and peroxy acids.
[0041] As used herein, "oxidation" refers to the abstraction of one or two electrons from
benzidine or a substituted benzidine to form a meriquinone or quinone diimine. Preferably
the oxidation herein uses a peroxide oxidant.
[0042] As used herein, "oxidation catalyst" refers to any compound which increases the rate
of oxidation of benzidine or a substituted benzidine to the meriquinone or quinone
diimine.
[0043] As used herein, "peroxidative catalyst" refers to an oxidation catalyst which catalyzes
reduction of a peroxide to the related alcohol (or water if hydrogen peroxide is the
oxidant) by a hydrogen donor such as an alcohol or amine. Subclasses of peroxidative
catalysts include aquated or otherwise complexed transition metal ions which are reactive
toward electron transfer (e.g., copper, iron, cobalt, manganese), hemes, hemoproteins,
and specific enzymes known as peroxidases. A subclass of peroxidases, the "haloperoxidases",
employ halide ion as a cofactor. The most commonly used peroxidase is purified from
horseradish roots.
[0044] As used herein "solubility" refers to the concentration of a compound in solution
when it is in equilibrium with a solid phase containing the same compound. If the
compound is a cationic meriquinone (or any ion), the solid phase should contain a
counter-ion of opposite charge in sufficient quantity to balance exactly the cationic
charge, and the compound solubility will vary inversely with respect to counter-ion
concentration in solution and (in most cases) directly with respect to temperature
and ionic strength contributed by poorly precipitating electrolytes.
[0045] As used herein, "controllable" is used to described properties of the meriquinone-containing
solid phase such as the solubility, color, crystallinity, and crystal size, which
can be selected simply by controlling the conditions under which the meriquinone is
deposited in the solid phase. For example, solubility of the meriquinone salt is controlled
by chemical identity of the anion, anion concentration, pH, temperature, and total
ionic strength of the medium. Crystallinity and color are determined by the chemical
identity of the anion. Crystal size may be controlled by the chemical identity of
the anion, temperature, anion concentration, and the speed with which meriquinone
is generated by oxidation of benzidine or a substituted benzidine.
[0046] As used herein, "biological material" refers to a substance or structure which is
present in or extracted from a living or dead biological organism. Examples of biological
materials include proteins, specific regions within proteins, nucleic acids, specific
nucleic acid sequences, carbohydrates, subcellular structures, cells, and tissues.
[0047] As used herein, "visualizing" and "visualization" mean the detection of the biological
material or identification or characterization of at least a portion or region of
the biological material, the latter being exemplified by normal genetic polymorphism
not associated with a disease.
[0048] As used herein, "test sample" refers to a solid phase such as a polymer, a gel, an
histological section, or a cytological smear, or a liquid phase, including dissolved
and suspended mixtures, such as is tested in an immunoassay or other diagnostic assay.
[0049] As used herein, "polymeric anion" refers to a polymer which has a negative ionic
charge. Examples include polyacrylate, polymethacrylate, dextran sulfate, sulfated
glycosaminoglycans, polyglutamate, polyasparate, carboxymethyl-cellulose, -dextran,
or -agarose, sulfoethyl- or sulfopropyl-cellulose, -dextran, or agarose, polyphosphate,
polyanethole sulfonate, or any other suitable negatively charged polymer.
[0050] As used herein, an "effective amount of an effective anion or polymeric anion" refers
to the amount of an appropriate anion or polymeric anion which will cause formation
of a solid salt or immobilized complex of the anion or polymeric anion with the meriquinone
of the benzidine or substituted benzidine, whichever is used in the process, which
salt or immobilized complex has a meriquinone solubility below 10⁻⁵
M.
[0051] As used herein, "tag" refers to a label moiety which contains or is capable of generating
a radioactive, electron-opaque, colored or fluorescent material and is attached through
strong binding to the probe protein or nucleic acid in question or to another molecule
which binds to the probe in some fashion. An example is an enzyme such as a peroxidase
which reacts with a substrate to form a detectable product and is coupled covalently
to an antibody or to streptavidin.
[0052] As used herein, "detecting compound" refers to any compound which binds specifically
to the biological material. For example, if the biological material is an antibody,
the detecting compound may be an antigen containing an epitope which binds specifically
to the antibody. If the biological material is a nucleic acid, the detecting compound
may be a complementary strand of the nucleic acid capable of hybridizing thereto.
[0053] As used herein, "Western blot" refers to an analytical procedure in which (a) a mixture
containing an antigen is separated by gel electrophoresis or isoelectric focusing,
(b) the resolved components are transferred to and immobilized on a paper, glass fiber,
or plastic sheet, and (c) the positions and identities of the components are determined
by various methods which may create visible signals, including binding of a tagged
antibody specific for the antigen in question or for another antibody which is specific
for the antigen in question. This term also is construed to cover analyses in which
(a) a mixture containing proteins bearing any sort of moiety recognized by a binding
protein is subjected to electrophoresis or isoelectric focusing, (b) a blot of the
separation pattern is prepared, and (c) the blot is visualized by exposure to the
binding protein, directly or indirectly attached to a tag.
[0054] As used herein, "Southern blot" refers to an analytical procedure in which (a) a
mixture containing various pieces of DNA is separated by gel electrophoresis, (b)
the resolved DNA molecules are transferred to an immobilized in single-stranded form
on a paper, glass fiber, or plastic sheet, and (c) the positions and identities of
the components are determined by various methods which may create visible signals,
including base-paired hybridization to a tagged polynucleotide probe of base sequence
at least partially complementary to a targeted sequence of interest. The probe may
be directly or indirectly tagged; in the latter case, the tag will be attached to
another molecule which binds tightly to the probe.
[0055] As used herein, "Northern blot" refers to an analytical procedure in which (a) a
mixture containing various pieces of RNA is separated by gel electrophoresis, (b)
the resolved RNA molecules are transferred to and immobilized in single-stranded form
on a paper, glass fiber, or plastic sheet, and (c) the position and identities of
the components are determined by various methods which may create visible signals,
including base-paired hybridization to a tagged polynucleotide probe of base sequence
at least partially complementary to a targeted sequence of interest. The probe may
be directly or indirectly tagged, as for Southern blots.
[0056] As used herein, "immunodot blot" refers to an analytical procedure in which an antigen
in a mixture is immobilized on the surface of a paper, glass fiber, or plastic sheet
and the presence of the antigen is determined by various methods which may create
visible signals, including binding of a directly or indirectly tagged specific antibody.
Alternatively, the mixture may contain an antibody which is identified with a directly
or indirectly tagged antigen.
[0057] As used herein, "nucleic acid hybridization dot blot" refers to an analytical procedure
in which a nucleic acid in a mixture is immobilized in single-stranded form on the
surface of a paper, glass fiber, or plastic sheet and the presence of the nucleic
acid is determined by various methods which may create visible signals, including
base-paired hybridization to a directly or indirectly tagged polynucleotide probe
of base sequence at least partially complementary to a targeted sequence of interest.
[0058] As used herein, "enzyme immunoassay" (EIA), also known as "enzyme-linked immunosorbent
assay" (ELISA), refers to an analytical procedure in which an antigen or antibody
in a mixture is detected via its binding to a complementary antibody or antigen immobilized
in some fashion on any solid support or suspended particles, such that the binding
generates a proportionate enzymatically generated signal, either attached to the support
or liberated into a fluid medium which can be separated from the support or particles.
There are many ways in which the signal can be linked to the binding event. In a "sandwich"
method for antigens, the antigen is extracted from the mixture by a nonspecific absorbent
or bound to a specific "capture" antibody attached to the solid phase or suspended
particles and specific probe antibody is bound to the immobilized antigen. The probe
antibody may be conjugated to enzyme or may be detected by a molecule which binds
to the probe antibody and is attached directly or indirectly to the enzyme. In the
"sandwich" method for antibodies, the antibody is removed from the mixture by binding
to antigen attached to the solid phase or suspended particles and in turn binds a
probe molecule, such as another antibody or
Staphylococcus aureus protein A, which binds to certain immunoglobulins. The probe may be conjugated to
the enzyme or may be detected by a molecule which binds to the probe and is attached
directly or indirectly to the enzyme.
[0059] As used herein, "immunohistochemical staining" refers to an analytical procedure
in which a thin slice of a biological tissue (an "histological section") is attached
to a glass slide and exposed to an antibody probe specific for an antigen which might
be present in the tissue. The presence, location and approximate amount of antigen
can be determined by microscopy after detection of the bound antibody via a directly
coupled tag or exposure to another molecule which binds to the antibody and to which
a tag has been coupled.
[0060] As used herein, "immunocytochemical staining" refers to an analytical procedure in
which a suspension of cells (e.g., from blood or from cell culture) is spread across
and attached to a glass slide (to form a "cytochemical smear") and exposed to an antibody
or antigen probe specific for an antigen or antibody which might be carried by the
cells. The presence, distribution, and approximate amount of antigen or antibody can
be determined by microscopy after detection of the bound antibody or antigen via a
directly coupled tag or exposure to another molecule which binds to the added antibody
or antigen and to which a tag has been coupled.
[0061] Occasionally, histochemical or cytochemical staining for endogenous peroxidative
or oxidative catalytic activity is performed by exposing histological sections or
cytological smears directly to benzidine or a substituted benzidine, with or without
added peroxide, but without mediation of an immunological reaction. In addition, enzyme-tagged
nucleic acid hybridization is beginning to be used to identify specific genetic material
in cells or subcellular fractions examined microscopically. All of these methods are
included in the terms, "histochemical staining" and "cytochemical staining".
[0062] The invention herein is realized through the controlled formation of a solid salt
of the meriquinone of a benzidine or a substituted benzidine having a solubility less
than about 10⁻⁵ M with respect to meriquinone. If a polymeric anion is present, the
meriquinone may be contained in a dissolved or immobilized complex or a solid salt
of the polymeric anion. The salt or complex is prepared by reacting the benzidine
or substituted benzidine in aqueous solution at a pH of 3-7 with an oxidant in the
presence of an oxidation catalyst and an anion chosen such that the salt or complex
will have the desired solubility, color, crystallinity, or crystal size. The precipitated
or immobilized salt or complex may be used to indicate the location of oxidative catalytic
activity on a solid phase or in a gel, thereby allowing visualization of a biological
material as defined above by color formation on the solid or in the gel. Alternatively,
immobilization of the salt or complex may simply facilitate separation of the meriquinone
from excess reactants.
[0063] The benzidine or substituted benzidine may be any of those defined above. Most preferably,
the benzidine herein is TMB because it clearly lacks carcinogenic and mutagenic activity
and is turned over by horseradish peroxidase, the preferred oxidation catalyst for
most applications, with a very high catalytic rate and a very low rate of enzyme suicide.
If the precipitates of the meriquinones of benzidines other than TMB are colored differently
from that of TMB however, double-specificity probing of solid-phase assays may be
possible, where one probe is developed with TMB until the enzyme is inactivated, and
another probe is then applied and developed with another benzidine substrate.
[0064] The structure of the solid salt of the meriquinone is believed to be represented
by one of the following formulae, without limitation to any particular theory: MA₂,
MA, M₃A₂ or M₂A where A is the anion and M is the meriquinone.
[0065] Polymeric complex ions generally show no such stoichiometric limitations, other than
that the positive charge donated by the meriquinone will not significantly exceed
(and usually will be much less than) the negative charge from the polymeric anion.
[0066] The anion is usually part of the buffer but may be on the solid phase, as when (a)
a membrane or other solid phase is treated with a polymeric anion which binds to it,
prior to initiation of the oxidation reaction, or (b) the solid phase is a cation
exchange polymer. The monomeric anion must be soluble in water and the polymeric anion
can be water-soluble or insoluble. Generally, the monomeric anion can be any anion
which can form a meriquinone salt with solubility less than 10⁻⁵ M. Specific monomeric
anions within this class include malate, pyrophosphate, maleate, fumarate, formate,
oxalate, succinate, citrate, isocitrate, tartarate, phthalate, isophthalate, terephthalate,
benzoate, hemimellitate, trimellitate, trimesate, pyromellitate, mellitate, mesaconate,
ethylenedinitrilotetraacetate, 1,2,3,4-butane tetracarboxylate, malonate, glutarate
and any other anions meeting the solubility definition. Sulfate, citrate, nitrate
or a halide, may also be employed if TMB is the substituted benzidine. Preferably
the anion is a di-anion or tetra-anion. Also preferred are anions which are conjugate
bases of unsaturated or aromatic organic acids. An unsaturated organic acid is a carboxylic
acid containing at least one carbon-carbon double bond and contains carbon, oxygen,
and hydrogen atoms, optionally with nitrogen and/or sulfur atoms. An aromatic organic
acid is a carboxylic acid containing at least carbon, hydrogen, and oxygen atoms and
contains at least one aryl group.
[0067] It is noted that solubility of the meriquinone in the salt depends mainly on the
anion structure (charge, size and shape), the anion concentration, and the total ionic
strength of the medium. For example, in many instances monoanions such as acetate,
formate and dihydrogen phosphate are much less effective precipitants of the salts
than di-, tri- or tetra-anions such as oxalate, succinate, sulfate, citrate, pyrophosphate,
and fumarate. Selection of an anion which is effective will depend on its ultimate
use: the solubility desired, the color desired, and crystallinity. Preferred effective
anions for lowest solubility value are maleate, sulfate (for TMB only), pyrophosphate,
oxalate, succinate, glutarate, fumarate, benzoate, hemimellitate, trimellitate, trimesate,
pyromellitate, mellitate, mesaconate, phthalate, isophthalate and terephthalate, and
most preferred for effectiveness in precipitation are the planar anions such as oxalate,
maleate, fumarate, phthalate, isophthalate, terephthalate, benzoate, hemimellitate,
trimellitate, trimesate, pyromellitate, mellitate, and mesaconate.
[0068] The anion herein may also be an anionic detergent which is noncovalently bound to
the solid support such as lauryl sulfate, taurocholate, or taurodeoxycholate. In addition
the anion may be a polymeric anion as defined above. Preferred of such polymeric anions
are polyacrylate, polymethacrylate, polyphosphate, polyanethole sulfonate, and dextran
sulfate. A polymeric anion such as dextran sulfate may be combined with a monomeric
anion such as fumarate.
[0069] In the event that the anion to which the meriquinone binds is not itself an effective
chelator of transition metal ions and the intended oxidation catalyst is not an aquated
or otherwise complexed (non-heme) transition metal, it is preferred to include in
the reaction medium an effective amount of a suitable chelator, such as, for example,
EDTA, o-phenanthroline, biphenyl, or the like, to block competing catalysis by trace
transition metal ions (especially iron, copper, cobalt, nickel, and manganese) which
might be present as impurities. Alternatively, but less conveniently, all or most
components of the reaction system are exposed to an immobilized chelating agent, such
as Chelex 100, a resin supplied by Bio-Rad Laboratories, either by batchwise mixing
and filtration or decantation, or by passage through a bed of the immobilized chelating
agent.
[0070] The invention herein in its most general form relies on the ability of benzidine
and substituted benzidines to function as electron donors for oxidative reactions
wherein the oxidant may be any electron acceptor, including, for example, oxygen or
peroxide, in the presence of an oxidative catalyst. The benzidine or substituted benzidine
may be used to locate and quantitate such oxidative activities by the appearance of
a color when the benzidine is presented to the catalyst in the presence of oxygen
or peroxide. Preferably, the electron acceptor is a peroxide. The peroxide may be
supplied or may be generated by a separate oxidation reaction employing oxygen as
oxidant and an oxidase enzyme as catalyst. In this case, precipitation or immobilization
of meriquinone salts or complexes, which have easily visible color, will be employed
to indicate the localized presence of peroxidative activity or to locate or quantitate
peroxides, either as analytes or, in the case of hydrogen peroxide, as products of
catalysis by certain oxidase enzymes. The peroxide for this purpose may be, but is
not restricted to, hydrogen peroxide, any alkyl or aryl peroxide, such as, for example,
methyl, ethyl, t-butyl, and cumene peroxide, urea hydrogen peroxide, and the like.
Preferably, the peroxide is hydrogen peroxide, a C₁-C₁₀ alkyl peroxide, cumene peroxide,
or urea hydrogen peroxide, most preferably, hydrogen peroxide, methyl, ethyl or t-butyl
peroxide, or urea hydrogen peroxide.
[0071] If peroxide is the oxidant, the oxidation catalyst specifically catalyzes the reaction
of the benzidine or substituted benzidine with the peroxide. Preferably, the catalyst
is a peroxidase such as horseradish or turnip peroxidase, a hemoprotein, such as hemoglobin,
or a protein-free iron porphyrin. Most preferably, the catalyst is horseradish peroxidase.
The exact type of catalyst is chosen based on the ultimate use to which the meriquinone
is put. For example, if the catalyst is a hemoprotein or iron porphyrin derived therefrom,
the invention is preferably used to indicate the presence of blood in any body fluid
such as urine, in fecal material, or in a forensic sample, or to indicate the occurrence
of hemolysis in blood (via the presence of hemoglobin in cell-free plasma or serum).
In such a use the heme or hemoprotein is generally free in solution and the peroxide
and benzidine or substituted benzidine are adsorbed to or imbibed in a solid phase
or gel, to which the solution is applied.
[0072] If the catalyst is a peroxidase enzyme, it is preferably used to detect an analyte.
Examples of such assays include Western blots, Southern blots (where, for example,
the membrane is treated with dextran sulfate which catches the blue meriquinone product
on the membrane), Northern blots, nucleic acid hybridization blots, immunodot blots,
immunohistochemical staining, immunocytochemical staining, EIAs (in solution or suspension),
and the like. While the peroxidase (or other oxidation catalyst) may be supplied as
by immobilization within or injection into organisms or cells at the site where color
development is desired, it is preferably separately bound, directly or indirectly,
to another molecule which specifically binds to the specific analyte to be detected.
In a special application, oxidases and peroxidase enzymes are coupled to separate
molecules which bind directly or indirectly to the analyte. This latter format reduces
the background in the analyte binding assays because signal will appear only where
the analyte is located in sufficient density to immobilize the catalysts in close
proximity. Random non-specific binding of separate oxidase or peroxidase conjugates
to the gel or solid surface will not generate hydrogen peroxide near a peroxidase
molecule, and the peroxide will diffuse into the medium, away from the gel or solid
support, before it has a chance to oxidize a benzidine or substituted benzidine to
the colored meriquinone.
[0073] Examples of molecules which can be used to bind to the analyte include nucleic acids
and non-catalytic proteins. The nucleic acids are preferably DNA or RNA comprising
a nucleotide sequence which is complementary to a codon or anti-codon sequence from
the chromosome(s) of an organism, preferably a living organism, such that hybridization
will take place. Examples of organisms whose sequences are to be detected include
viruses, rickettsials, bacteria and eukaryotes.
[0074] Examples of non-catalytic proteins which may be bound to the peroxidase include antibodies,
antigens, hormone-binding proteins, avidin (including streptavidin), lectins, protease
inhibitors, nucleic acid binding proteins, and antibody-binding proteins such as Staphylococcal
protein A and anti-antibodies. For immunoassays, the non-catalytic protein is preferably
an antibody which binds specifically to an organism or a component of an organism,
preferably a virus, rickettsial, bacterium, protozoan, yeast, fungus or cancer cell.
For nucleic acid hybridization assays, the non-catalytic protein may be avidin or
streptavidin, which will bind to a biotinylated hybridization probe.
[0075] If peroxide is used as the oxidant, it is most likely provided in solution along
with the benzidine or substituted benzidine. However, separate application of these
two reagents is also contemplated herein, where one or both reagents is present in
solid form or incorporated into a gel. Likewise, the anion, including the polymeric
anion, to which the meriquinone binds may be provided together with or apart from
the peroxide and benzidine or substituted benzidine and may be provided dissolved
in solution, suspended in solution, or incorporated into a gel or attached to a solid
phase, either covalently or by adsorption. The polymeric anion may itself be the solid
support with which the benzidine comes into contact. Any of these reagents may be
applied to a solid phase in solution form and deposited by evaporation or addition
of a precipitating solvent.
[0076] The crystallinity, crystal size, color, and solubility of the meriquinone salt or
complex ion can be deliberately controlled by altering such non-exclusive factors
as type of anion, anion concentration (the anion is usually the buffer employed),
temperature, type of benzidine or substituted benzidine, the pH of the reaction medium,
the ionic strength of the medium, and the type of solvent. Figure 1 summarizes the
coupled redox, precipitation and acid-base equilibria which control the outcome of
the reaction, using TMB, peroxide, and a precipitating dianion. The figure shows how
excess TMB will drive the two-electron reaction product into the meriquinone, and
how the solubility of the salt depends critically on the pH. Too much acid will protonate
the TMB and break up the charge-transfer complex or protonate the buffer anion and
break up the salt. Too much base will deprotonate the quinone diiminium ion to break
up the charge-transfer complex. The effective pH range herein is 3 to 7, preferably
3 to 6 for maximum salt precipitation. Increased anion concentration and lowered reaction
temperature favor salt precipitation or complex ion formation, with anion concentrations
of 10⁻³ to 10⁻¹ M and reaction temperatures of 0 to 60 C being preferred. The optimal
concentration of oxidant in the reaction medium for maximum insolubility will depend
mainly on its type and the ultimate use of the salt, but for hydrogen peroxide will
generally range from about 10⁻⁴ to 10⁻² M.
[0077] The reaction medium is necessarily aqueous to permit measurement of oxidative activity;
however, the medium may contain an organic cosolvent to control the solubilities of
both the benzidine or substituted benzidine reactant and the meriquinone product.
Any organic cosolvent may be employed, in an amount not exceeding 30% by volume of
the entire solvent, depending on the particular cosolvent utilized. Preferably the
amount of cosolvent is from about 0 to 10%. Preferred cosolvents are those which solubilize
the benzidine or substituted benzidine more than they do the merquinone product and
which are less inhibitory toward the oxidation catalyst than other solvents. Preferred
cosolvents meeting these criteria using horseradish peroxidase as catalyst include
isopropyl alcohol, ethyl alcohol and dimethyl sulfoxide.
[0078] The compositions of matter and processes of this invention may be used to visualize
the presence of specific biological materials such as proteins, nucleic acids, and
non-protein antigens. If the biological material is a nucleic acid, the process herein
may occur, for example, in a Southern blot, Northern blot, or nucleic acid dot blot.
The protein may be, for example, hemoprotein, an antibody or an antigen. If the protein
is an antibody (monoclonal or polyclonal) or antigen, the process herein may occur,
for example, in a Western blot, antigen dot blot, antibody dot blot, ELISA, immunohistochemical
staining, immunocytochemical staining, or in cell culture, as by screening any population
of bacteria, yeast or eukaryotic cultured cells for expression of an antigen which
is native or genetically engineered. If the biological material is tissue, cells or
subcellular structure, the process herein may occur, for example, in histochemical,
cytochemical or cell ultrastructural staining, respectively.
[0079] The biological material may be localized (deposited in a small region) on a solid
phase or contained in a gel or fluid. The solid phase may be the surface of a paper,
membrane, or polymer fabricated in the form of, for example, a fiber, thread, sheet,
bead, tube, dish, rod, or mesh. The solid phase of choice will be the one to which
the merquinone product adheres the best. The polymer may be, for example, cellulose,
chemically modified cellulose, nylon, chemically modified nylon, fluorocarbon, polyester,
agarose, acrylic ester, acrylic amide, polystyrene, chemically modified polystyrene,
and the like. The solid phase is preferably cellulose, nylon, nitrocellulose, polystyrene,
or an ion-exchange polymer, in bead or sheet form. If a cation exchange polymer is
used, the solid phase and the polymeric anion may be one and the same. Specifically
included are uniform latex beads, particles, or microspheres, which usually have diameters
below 10 µm and which often possess covalently attached anionic groups.
[0080] The gel may be, for example, polyacrylamide, agarose, starch, gelatin, or the like.
Preferably the gel is polyacrylamide or agarose. The fluid may be any fluid from the
body such as, e.g., blood, semen, mucus, pus, urine or saliva, or may be a chemical
extract of a body fluid or of a culture medium.
[0081] In one aspect, the presence of the biological material in a solid phase, gel, or
liquid can be detected, or a region (e.g., the HLA genes of human DNA) in the biological
material can be characterized or identified, by:
(a) contacting the solid phase or gel with an oxidation catalyst bound to a detecting
compound capable of interacting specifically with the biological material;
(b) incubating the solid phase or gel from step (a) under conditions whereby the detecting
compound will interact with the biological material if it is present in the solid
phase or gel;
(c) washing the solid phase or gel from step (b) to remove non-interacting detecting
compound;
(d) adding to the washed solid phase or gel from step (c) benzidine or a substituted
benzidine;
(e) subjecting the solid phase or gel to conditions under which the benzidine or substituted
benzidine will oxidize to a meriquinone thereof if the oxidation catalyst is present
(the conditions comprising a reaction temperature of 0 to 60 C, and an aqueous medium
of pH 3 to 7 containing an effective amount of an oxidant) and wherein an effective
amount of an effective precipitating or immobilizing anion is added during one or
more of the above steps (a)-(e) (preferably (c), (d) or (e)); and
(f) detecting the formation of a solid salt or immobilized complex of said anion or
polymeric anion and said cationic meriquinone, wherein the effective meriquinone solubility
is less than abut 10⁻⁵ M, and wherein said formation indicates the presence or characteristics
of the biological material.
[0082] In an EIA format, step (f) comprises adsorbing a visible quantity of the meriquinone
to an anionic surface, adsorbing a visible quantity of an anionic complex of the meriquinone
to a cationic surface, trapping a visible quantity of an insoluble salt of the meriquinone
on a filter membrane, or trapping a visible quantity of the merquinone adsorbed to
microscopic anionic particles on a filter membrane.
[0083] Regarding step (e), three independent variables (apart from temperature) most strongly
influence horseradish peroxide activity with TMB as chromogenic substrate: TMB concentration,
H₂O₂ concentration, and pH. Net HRP activity, defined as total color yield in a specified
reaction time interval, is a composite of two dependent variables, initial velocity
and catalytic suicide rate constant, if the assay time interval is sufficiently short
that substrates are not significantly depleted (likely near the detection limit of
any enzyme-linked assay). For relatively short assays (0-10 min.), however, suicide
is not severe, and initial velocity is the most important indicator of enzyme activity.
Initial velocity rises monotonically with TMB concentration, and is almost proportional
to TMB concentration at a H₂O₂ concentration of greater than 2
mM. The pH dependence of initial velocity at constant TMB concentration indicates an
optimum pH at 4. The pH dependence of TMB solubility indicates a monotonic and increasingly
steep rise as the pH is lowered from 5. The pH dependence of initial velocity at saturating
TMB indicates a four-fold increase from pH 5.0 to pH 4.0 and a much smaller increase
in activity as the pH is decreased form 4.0 to 3.6. Therefore, a pH of 3.5-4.5 is
the preferred pH range for step (e), more preferably pH 4.0, if the substituted benzidine
is TMB and the oxidation catalyst is horseradish peroxidase. The optimum horseradish
peroxidase assay conditions are at room temperature, pH 4.0, 0.4
mM (saturating) TMB, and 2-3
mM H₂O₂. The combined criteria of pH and saturating TMB have the most profound effect
on net activity, a four-fold increase from pH 5.0, where the enzyme most commonly
is assayed, to pH 4.0.
[0084] In another aspect, the presence of the biological material in a solid phase or gel
can be detected by the same process except that the first two steps are replaced by
the following three steps:
(a) contacting the solid phase or gel with a detecting compound capable of interacting
specifically with the biological material;
(b) contacting the solid phase or gel from step (a) with an oxidation catalyst conjugated
to a moiety capable of specifically interacting with the detecting compound; and
(c) incubating the solid phase or gel from step (b) under conditions whereby the detecting
compound will interact with the catalyst and with the biological material if it is
present in the test sample.
[0085] After formation of the meriquinone salt or immobilized complex ion, the solid phase
may be rinsed with an aqueous solvent, such as water, an aqueous buffer, or an aqueous
solution of an organic solvent such as ethanol, to wash away excess peroxide and benzidine
or substituted benzidine. The solid phase then may be air-dried or stored immersed
in an aqueous solvent.
[0086] In preferred aspects of the above multi-step processes, the incubation time and temperature
are 1-30 minutes at room temperature, the washing step to remove non-interacting detecting
compound is carried out more than once at room temperature, and the treatment with
benzidine or substituted benzidine is carried out for 1-70 minutes at room temperature
in the presence of an organic cosolvent as described above which increases the solubility
of the benzidine or substituted benzidine.
[0087] In one preferred embodiment the invention relates to processes for visualizing a
biological material (which is an antigen, antibody or nucleic acid) contained in or
on a solid phase using a Southern blot, Northern blot, DNA dot blot, RNA dot blot,
Western blot, antigen dot blot or antibody dot blot. The steps of these processes
mirror those described above generally except that (a) the test sample is specifically
a solid phase, (b) the detecting compound is specifically an antibody against an antigen,
an antigen or anti-antibody against an antibody or a nucleic acid hybridization probe
containing a single-stranded nucleotide sequence which is complementary to a codon
or anti-codon sequence which might be contained in a nucleic acid in the biological
material, (c) the oxidant is specifically a peroxide, and (d) the oxidation catalyst
is specifically a peroxidase.
[0088] In another specifically preferred embodiment, the invention relates to processes
for visualizing an analyte in an enzyme immunoassay format, wherein the analyte may
be an antibody or antigen which is suspended or dissolved in a fluid test sample.
[0089] In preferred embodiments of this process the substituted benzidine used is TMB, and
the anion is added during the step where the solid phase is subjected to oxidation
conditions. In other preferred embodiments, a polymeric anion is incubated with the
test sample; and excess polymeric anion is removed by washing with an aqueous solvent
prior to oxidation.
[0090] If the biological material is a nucleic acid, it is preferably DNA localized on a
membrane in a Southern blot format, as described, for example, by U.S. Patent No.
4,358,535. The detecting compound is preferably a DNA hybridization probe attached
to biotin, and peroxidase is preferably horseradish peroxidase bound to an avidin,
most preferably streptavidin. The precipitating or immobilizing anion or polymeric
anion is preferably citrate, fumarate, polyphosphate, polyanethole sulfonate, polyacrylate,
polymethacrylate and/or dextran sulfate.
[0091] The horseradish peroxidase-avidin or -streptavidin conjugate is preferably incubated
with the probe-hybridized target DNA in a solvent containing a chaotropic agent or
a detergent, or such solvent is used to wash the solid phase after the incubation.
Use of such detergents or urea is found to reduce the enzymatic background of Southern
blots caused by non-specific binding of enzyme conjugate to the solid support. This
background reduction is necessary if the increased analytical sensitivity is to be
translated into a reduced detection limit. Examples of suitable detergents for this
purpose include one or more of the following: Triton X-100, Nonidet P-40, sodium dodecyl
sulfate, Neodol 25-3S, Zwittergent 3-16, or taurodeoxycholate. Most preferably, the
detergent is Triton X-100 or Nonidet P-40. Examples of chaotropic agents include urea
and its monoalkyl or dialkyl homologues, preferably urea or 1,1-diethyl urea.
[0092] If the meriquinone salt is used to detect the presence of biological materials in
nucleic acid hybridization assays, a polymerase chain reaction procedure may be employed
to amplify the target sequence in the biological material using primers, DNA polymerase
and nucleotides. The amplification preferably is instituted before addition of the
detection system. Amplification is more fully described in Saiki et al.,
Science,
230, 1530-1534 (1985).
[0093] Furthermore, the DNA hybridization probe herein is most preferably a circular M13
probe containing a "gapped circle". Such probe may be prepared by any technique, including
the second-strand synthesis method described by Brown et al., (1982)
Gene,
20:139-144 or the in vitro hybridization of plus- and minus- strands described by Courage-Tebbe
et al.,
Biochim. Biophys. Acta, (1982),
697;1-5 and by Everett et al.,
The EMBO Journal, (1982)
1:433-437. The gapped circle construct preferably is attached to biotin by means of
a 4'-methylene-substituted-4,5',8-trimethylpsoralen moiety as described more fully
in U.S. Patent No. 4,582,789 issued April 15, 1986. The most preferred of these biotinylated
psoralen compounds is the compound of the structure:
[0094] Also most preferably the probe is directed to an oncogene, the β-globin region of
human DNA, or the human leukocyte antigen (HLA) region of human DNA. HLA probes are
described more fully in U.S. Patent No. 4,582,788 issued April 15, 1986 to H. Erlich.
[0095] In another preferred embodiment herein, the biological material is an antigen or
antibody to be detected in a Western blot format, with the detecting compound necessarily
being an antibody specific for (which binds to) the antigen to be detected or an anti-antibody
or antigen specific for the antibody to be detected. The peroxidase is preferably
horseradish peroxidase conjugated to an antigen, anti-antibody or antibody capable
of specifically interacting with the detecting compound, and the precipitating anion
is dextran sulfate and/or fumarate. More preferably, the biological material is a
ras p21 protein antigen, the detecting compound is an antibody directed to a specific
mutant of the protein, and the horseradish peroxidase is conjugated to an anti-antibody
specific for the detecting compound. The antibodies specific for a mutant of the normal
p21
ras protein and their generation are described more fully in European Patent Publication
No. 175,360 to F. McCormick et al. Essentially peptides mimicking the region surrounding
the amino acid at position 12 of the p21 protein (normally serine) are generated and
injected into rabbits, yielding mutant-specific polyclonal antibodies. The anti-antibody
may be, for example, a goat anti-rabbit IgG conjugated to horseradish peroxidase and
directed against the mutant-specific antibodies. For Western blots preferred anions
are a combination of fumarate and dextran sulfate, or pyrophosphate alone. The results
are found to be much more sensitive and durable when dextran sulfate is used with
fumarate rather than if fumarate is used alone as anion.
[0096] The major advantage of the present invention over what is described in the literature
is that it permits TMB to be used in a wide range of analyses of peroxidative activity
in which the reaction product must be deposited from solution at the site of generation
or must be separated from unreacted reagents (e.g., to minimize background). The peroxidase
substrates previously known to form insoluble products do so with lower catalytic
activity, giving lower analytical sensitivities. In addition, the precipitation or
complexation of the merquinone concentrates color into a relatively small volume and
prevents its diffusion throughout the analytical system. Such localization increases
analytical sensitivity, as absorbance is proportional to chromophore concentration,
which is inversely proportional to the volume through which the chromophore is distributed.
Concentration of the analytical signal permits visual evaluation of the presence of
the analyte without resorting to expensive or sophisticated instrumentation and facilitates
storage or optical recording of a permanent record. It also permits washing to remove
unreacted reagents which might otherwise increase the analytical background. Finally,
some assays require knowledge of the location of the analyte at a specific site (via
localization of the visible signal which its presence generates) to identify or characterize
the analyte and distinguish it from alternatives.
[0097] The invention herein provides other potential improvements over known procedures.
As the meriquinone salts of certain anions have different colors from those of other
anions, choice of anion provides some latitude in choice of optimum color for a given
application. The color of the salt or complex ion formed ranges from black to green.
As the meriquinone salts have solubilities ranging over many orders of magnitude,
choice of salt might be used to enhance contrast in the spatial distribution of color
in a gel or on the surface of a solid. Salt solubility can be manipulated so that
areas containing high concentrations of analyte supply sufficient meriquinone to precipitate
with a given anion, whereas those with lower levels of peroxidative activity supply
too little meriquinone to precipitate before it diffuses from the gel or surface.
Such contrast enhancement can be used to improve the distinction between analytical
"signal" and "background". Finally, polymeric anions form amorphous rather than crystalline
deposits with meriquinone, thereby avoiding artifacts observed in histochemical or
cytochemical analyses when crystals grow too large. In addition, amorphous deposits
generally adhere more strongly to surfaces than crystals do.
[0098] Specific applications herein for the use of the immobilized or precipitated meriquinone
in visualization include any context in which an oxidative activity is measured and
localized in space, i.e., where the reaction product does not move from the site of
generation. Examples include but are not limited to: (1) Southern blots visualized
by horseradish peroxidase (HRP)-streptavidin (SA) conjugates bound to biotinylated
DNA probes hybridized to specific genomic or cDNA sequences; (2) Northern blots detected
in a similar manner after hybridization to specific RNA sequences; (3) DNA or RNA
dot blots (e.g., for infectious diseases) detected in a similar manner; (4) Western
blots visualized by HRP-streptavidin conjugates bound to biotinylated first or second
antibodies or by HRP-derivatized first or second antibodies; (5) antigen dot blots
visualized in a similar manner; (6) antibody dot blots detected with HRP-streptavidin
conjugates bound to biotinylated antigen or with HRP-derivatized antigen; (7) any
sort of binding assay in which one reagent is localized on a solid phase or in a gel
and the other reagent is linked directly or indirectly to a peroxidase; (8) tests
for blood in feces or urine or for hemolysis in plasma; (9) forensic chemical tests
for blood; (10) histochemical or cytochemical staining of peroxidase-containing,
peroxidase-labeled, or immunoperoxidase-labeled cells; and (11) screening of microbial
colonies for expression of an antigen, native or introduced by genetic engineering.
[0099] In a different but overlapping set of applications, immobilization of the reaction
product permits filtration or decantation followed by washing to remove unreacted
reactants, thereby terminating reaction in a controlled manner, reducing background,
and simplifying creation of a permanent record. In addition to those listed above,
these applications include enzyme immunoassays.
[0100] Kits of components which can be used to detect antibodies, antigens, or nucleic acids
in solution, in suspension, on histochemical sections, on cytochemical smears, or
in or on solid or gel phases, as in Southern blots, Northern blots, DNA or RNA dot
blots, Western blots, antigen dot blots, antibody dot blots, and solution-phase enzyme
immunoassays are also within the scope of this invention. The essential feature of
such a kit is that it contains instructions which result in the immobilization or
precipitation of the meriquinone of benzidine or a substituted benzidine by application
of a polymeric anion or an effective concentration of an effective anion to give the
meriquinone a solubility of less than 10⁻⁵
M. Optional components include (a) benzidine or a substituted benzidine; (b) materials
for preparing solutions (e.g., incubation buffers) containing the precipitating anion
or polymeric anion, or the solutions themselves; (c) a peroxide in dissolved or pure
form; (d) a peroxidative or oxidative catalyst, probably coupled to another compound
which binds directly to the analyte or which reacts with a compound which binds to
the analyte; (e) a non-anionic filter membrane or a solid phase which can adsorb the
analyte in a specific or nonspecific manner, such as an anionic trapping component
including, for example, a filter membrane, latex beads, a dipstick or a cation-exchange
resin (where "anionic" means a surface bearing fixed negative charges); and (f) one
or more control samples, such as tagged (e.g., biotinylated) molecular weight markers,
chromosomal DNA or ribosomal RNA for kits detecting nucleic acids, nonspecific and
specific immunoglobulins for kits detecting antigens (e.g., non-specific (not limited
to mutants) polyclonal and monoclonal antibodies against p21 protein), and antigen-containing
samples for kits detecting antigens. Other components of the kits such as wash buffers
and stabilizers are also within the scope of this invention, as are kits which contain
test strips imbibed with and dried with the benzidine or substituted benzidine, the
precipitating anion or polymeric anion, and a peroxide.
[0101] Also within the scope of this invention are kits for detecting oxidative catalysts
such as peroxidases, oxidases, hemoproteins, hemes, and transition metal ions, provided
that they instruct the user to precipitate or immobilize the meriquinone of benzidine
or a substituted benzidine by applying a polymeric anion or an effective concentration
of an effective anion. The kit may detect all or part of a gene from an HTLV III virus,
an HLA gene, all or part of the gene for a normal or mutant hemoglobin, or all or
part of a normal or mutant oncogene. The antigen may be human chorionic gonadotrophin,
human lutinizing hormone, and pathogenic organisms such as Neisseria gonorrhea, Chlamydia,
or Herpes simplex virus.
[0102] The embodiments of the invention will be illustrated further by the examples which
follow. In the examples all parts and percentages are by weight if solids and by volume
if liquids, unless otherwise indicated. Temperatures are in degrees Celsius.
EXAMPLE 1
Formation and Description of Solid Salts of the Meriquinone of 3,3',5,5'-Tetramethylbenzidine
(TMB)
[0103] Fifty ml volumes were prepared of 0.2 mg/ml TMB, 0.0015% H₂O₂, 10% ethanol in each
of the following pH 5.0 buffers: 0.10
M sodium acetate; 0.10
M sodium formate; 0.10
M sodium phosphate, 0.10
M sodium sulfate, 0.010
M sodium acetate; 0.10
M sodium pyrophosphate, 0.010
M sodium acetate; 0.10
M sodium fumarate; 0.10
M sodium maleate; 0.10
Mpotassium oxalate; 0.10
M sodium malonate; 0.10
M sodium succinate; 0.10
M sodium glutarate; 0.10
Msodium citrate; 0.10
M sodium malate; 0.10
M sodium tartarate; 0.10
Msodium isocitrate, 0.10
M potassium phthalate; 0.10
M potassium ethylenedinitrilotetraacetate (EDTA); 0.10
M sodium 1,2,3,4-butane tetracarboxylate; 0.025
M potassium isophthalate, 0.025
M potassium terephthalate (final pH=5.4, not 5.0); 0.07% sodium polyacrylate (MW 2000);
0.70% sodium polyacrylate; 0.10% sodium dextran sulfate (MW 500,000); and 1.0% sodium
dextran sulfate. To each was added approximately 1 µg of horseradish peroxidase at
room temperature. Each sample turned dark blue to black within a few seconds after
addition of the enzyme. After 15-30 minutes, the reaction mixtures were started chilling
to approximately 5 C. After standing overnight, they were spun in a centrifuge at
10⁴ rpm, 0 C for 135 min. The light but copious precipitates were incompletely pelleted
by this procedure. After removal of most of the clear supernatants, the remaining
suspended crystals were pelleted by 5 min spins at 5 C in 1.5 ml polypropylene Eppendorf
tubes in a micro-centrifuge.
[0104] All of the reaction mixtures except acetate and dextran sulfate yielded final pellets
occupying 0.1-0.3 ml. There were a few crystals in the chilled acetate buffer, not
enough to recover for physical study. Neither dextran sulfate preparation yielded
any crystals, although the violet-black hue of the solution suggested that some reaction
of the meriquinone with dextran sulfate (presumably to form a complex ion) had occurred,
as the dissolved meriquinone is blue, not violet. Examination with a microscope with
polarizing optics of all of the precipitates except that with polyacrylate showed
a birefringent crystal form consisting of short or long needles. The polyacrylate
precipitates were non-birefringent amorphous solids. The precipitate of 1,2,3,4-butane
tetracarboxylate was a mixture of birefringent crystals and non-birefringent amorphous
particles. The various precipitates had characteristic colors which depended on the
anions used to prepare them, as shown in Table I.
[0105] Most of the bulk solids showed a rich violet-blue hue which we have called "royal
blue". Under transmitted illumination, their crystals showed a combined green and
blue color. However, a significant subset of the solids were much darker - black or
almost black. They showed a range of violet, blue, and green hues with transmitted
light. The color contrast between the amorphous solids precipitated from two different
concentrations of polyacrylate may provide some hint as to why some salts and complexes
are darker than others. Meriquinone molecules complexed to 0.07% polyacrylate must
be much closer to one another on the polymer chain than those complexed to 0.7% polyacrylate.
Increased proximity dramatically darkens the color.
[0106] The amorphous nature of the polyacrylate-meriquinone precipitates suggests that polymeric
anions should be especially useful precipitates in histochemical and cytochemical
analyses, where crystals might destroy the ultrastructure which is a major focus of
study.
EXAMPLE 2
Solubilities of Salts of the Meriquinone of TMB
I. Determination of Stoichiometry from the Anion Concentration Dependence of Meriquinone
Solubility
[0107] If a dissolved meriquinone, M⁺
m, is in equilibrium with the solid salt which it forms with an anion, A⁻
a, thermodynamic law requires that the following equilibrium expression be obeyed:
[M⁺
m] [A⁻
a]
m/a = K
eq.
[0108] This equation has the following logarithmic form:
log [M⁺
m] + m/a log [A⁻
a] = log K
eq.
[0109] [M⁺
m] is simply the solubility of the meriquinone. This equation predicts that a plot
of log solubility versus log of the anion concentration should be a straight line
with a slope of
-m/a. This slope gives the stoichiometric ratio of anion to meriquinone in the salt. Many
of the buffer anions used in this study can be expected to have different values of
the anionic charge,
a, in different pH regions, because they are conjugate bases to diprotic, triprotic,
or tetraprotic weak acids. However, some, like sulfate and formate, can have only
one value for
a at accessible pH values. If
m/a is measured for them,
m can be calculated. Presumably the meriquinone retains this net charge in all salts
which it makes in the relevant pH range (4-7). Therefore once
m is evaluated for one salt and
m/a is evaluated for other salts, the quotients of these values gives
a values for the other salts.
[0110] The experiment described here used the preceding theory to estimate
m and
a for seven salts. Preliminary solubility studies suggested that the equilibrium concentration
of [M⁺
m] for each of these salts could be accurately measured at room temperature if [A⁻
a] ranged from 10⁻³ to 10⁻²
M. To keep the ionic strength approximately constant during the study of the buffer
anion concentration dependence, 10⁻¹
M Na acetate was included in all of these buffers, along with 10% ethanol to increase
the solubilities of both TMB and the meriquinone. Preliminary studies had shown that
the acetate salt of the TMB meriquinone is so soluble that any precipitate seen would
contain the other buffer anion in the mixture, not acetate.
[0111] A series of buffers were constructed, all pH 5.0 at room temperature, 10% in ethanol,
and 0.10
M in sodium acetate, and either 10⁻³ M, 3 x 10⁻³
M or 9 x 10⁻³
M in one of the following electrolytes: sulfate, pyrophosphate, oxalate, succinate,
maleate, fumarate, or citrate. These are stoichiometric concentrations, uncorrected
for ionization at pH 5.0. The corresponding solid meriquinone salts obtained in Example
1 were washed three times in 10⁻²
M concentrations of the corresponding pH 5.0 buffers (containing no ethanol), by vigorous
mixing to resuspended the pellet followed by spinning for several minutes in a micro-centrifuge.
Each wash involved a total volume of 1.5 ml (pellet volume of about 0.3 ml) in an
Eppendorf polypropylene centrifuge tube. Then 20-50 µl of washed, pelleted meriquinone
salt and a few mg of TMB were mixed in 2 ml of the buffer containing the same anion,
in a glass tube, covered, and shaken in a thermostated water bath at 25.2 ± 0.1 C.
At 30-60 min intervals, the crystal suspensions were spun 3-5 min at room temperature
in a microcentrifuge. The supernatant solutions were withdrawn carefully from the
light and delicate pellets with Pasteur pipettes and scanned in a spectrophotometer
between 260 and 700 nm. After scanning, the solutions and pellets were returned to
the equilibration tubes for renewed shaking. Repeat measurements were taken until
precision within 20% was obtained. Often only two and no more than three measurements
were needed on each sample to reach this degree of reproducibility, indicative of
complete equilibration of solid and solution phases; most repeat measurements agreed
to within 5%. Care was taken to assure that solid meriquinone salt and solid TMB were
present in each tube. Excess (saturating) TMB was added to suppress the dissociation
of meriquinone charge-transfer complex into component quinone diimine and TMB (see
Figure 1). This precaution does not change meriquinone solubility, but simplifies
its measurement. These spectra contained absorbance peaks at 370 and 650 nm characteristic
of meriquinone and a very small shoulder at 450 nm assigned to quinone diimine; a
much larger peak near 280 nm confirmed the presence of excess TMB. All spectra had
the same shape, regardless of the precipitating anion or the color of the precipitate.
Meriquinone concentration was calculated from A₆₅₀ assuming a molar extinction coefficient
of 3.9 x 10⁴ M⁻¹cm⁻¹ (Josephy et al., (1982)
Journal of Biological Chemistry,
257:3669-3675). If the concentration was too high to measure undiluted with a 1 cm light
path, the scan was performed on an undiluted sample with a 2 mm light path or an appropriately
diluted sample (later discarded) with a 1 cm light path.
[0112] Once solubility equilibria were established at 25.2 C, all of the tubes were transferred
to an ice-water bath. Solubilities at 0 C were determined for all solutions in which
they were high enough for accurate measurement.
[0113] Figure 2 contains the log solubility versus log anion concentration graphs from which
the salt stoichiometries were estimated. These plots also dramatically illustrate
the range of solubility, over more than 3 orders of magnitude for different salts.
The dashed lines were visually fitted. Table II summarizes the stoichiometry estimates,
based on rounding the slope to the nearest integral or fractional value giving integral
values for
m and
a. For example, the sulfate slope of 0.9 is close enough to 1.0 to suggest a 1:1 ratio
of M to A in this salt; the same approximation was made for fumarate, oxalate, and
succinate salts. As sulfate must be a di-anion at any pH close to 5, the meriquinone
must be a di-cation. It should be a di-cation in all of the salts. Therefore, the
citrate slope of 0.62 is so close to an
m/a value of 2/3 that citrate must precipitate as a trianion. The pyrophosphate slope
of 0.4 is close enough to an
m/a value of 1/2 that pyrophosphate must precipitate as a tetra-anion. The maleate slope
suggests crystallization as a mono-anion, although a di-anionic structure might have
been predicted.
[0114] Table III summarizes the temperature dependences of solubility for the seven salts,
averaged for the different stated concentrations of each salt. The buffers were all
adjusted to pH 5.0 at room temperature, but would have somewhat different pH values
at 0 C (usually lower by 0.2-0.3 pH units). Such strong temperature dependences indicate
high values for heats of solution, characteristic of ionic lattices.
II. Comparison of the Solubility Properties of TMB and Its Meriquinone
[0115] When the same methodology was applied to measure the solubility of TMB in a series
of buffers (each pH 5.0 and 0.10
M in a single anion) the data in Table IV were collected.
[0116] For most buffer ions, the behavior of TMB stood in stark contrast to that of its
meriquinone. Solubility was independent of buffer ion, and the temperature dependence
of solubility was low and independent of buffer ion. This behavior is expected of
a molecular, as opposed to an ionic, crystal lattice. At pH 5.0 TMB must have a molecular
charge close enough to 0 that it tends to crystallize in an un-ionized state. Oxalate
and maleate and possibly fumarate violated this simple picture for TMB, at least at
0 C. At temperatures in the 25-30 C range, TMB in these buffers had the same solubility
as TMB in the other buffers, suggesting crystallization in a molecular lattice. However,
at 0 C, TMB was significantly less soluble in these buffers than in the others; this
phenomenon suggest that ionic lattices, with higher heats of solution, are preferred
at low temperature for these two or three buffers.
[0117] The TMB and meriquinone salt solubility data present several important practical
consequences for the analytical use of TMB oxidation.
(1) Some buffers, such as fumarate, maleate, and oxalate, should be more effective
in localizing and immobilizing meriquinone as insoluble precipitates at the site of
generation than other buffers, such as citrate and pyrophosphate. (Other buffers,
not described in the preceding solubility studies, such as acetate, formate, and phosphate,
are even less effective in precipitating meriquinone).
(2) Meriquinone salt solubility can be effectively controlled by varying the buffer
concentration. The sharpness of control depends on the charge on the anion in the
crystal lattice. If it is desired to reduce the solubility of a given salt, simply
increase the buffer concentration.
(3) Meriquinone salt solubility can be effectively controlled with temperature. Low
temperatures dramatically reduce solubility.
(4) The difference in solubility behavior between TMB and its meriquinone means that
steps taken to reduce the solubility of the product will have no or only a modest
effect on the solubility of the reactant (for which a high value normally is desirable).
This fact simplifies the optimization of analytical procedures.
(5) The ionic strength dependence of solubility may provide a simple test of whether
the colored deposit formed by oxidation of benzidine or a substituted benzidine contains
the meriquinone or represents the nonionic polymer which can form upon further reaction
of the quinone diimine.
EXAMPLE 3
Immobilization of the Meriquinone of TMB by Polymeric Anions Bound to Solid Phase
Adsorbents
I. Cationic Adsorbents
[0118] Polyacrylic acid (mean MW 2000) was dissolved in water to a concentration of 0.7%
and adjusted with NaOH to pH 4.4. Dextran sulfate (sodium salt, mean MW 500,000) was
dissolved in water to a concentration of 1.0% and adjusted with HCl to pH 4.8. Separate
11 x 1 cm strips of three cationic adsorbents manufactured in sheet form (charge-modified
nylon and cellulose paper) were incubated two hours at room temperature in approximately
20 ml volumes of the 0.7% polyacrylate, the 1.0% dextran sulfate, or water, and washed
once in similar volumes of water. The strips were then used to line the vertical walls
of the wells in 6-well microtiter dishes. The wells were filled with 8 ml volumes
of 0.20 mg/ml TMB, 0.00075% H₂O₂, 10% ethanol in either 0.10
M Na citrate or 0.10
M Na pyrophosphate, pH 5.0. To each well was added approximately 5 ng of horseradish
peroxidase. The blue color characteristic of TMB oxidation to the meriquinone began
to appear immediately and intensified slowly; the reaction was allowed to proceed
overnight at room temperature.
[0119] After approximately 12 hours of reaction, all wells contained a dark blue solution
of meriquinone. The wells containing citrate buffer also contained blue crystals of
the citrate salt of the TMB meriquinone. The wells containing pyrophosphate also contained
blue-violet crystals of the meriquinone pyrophosphate salt. The adsorbent strips which
had been incubated in water contained very little color - no more than expected from
soaking with the meriquinone solution. The strips which had been incubated in 0.7%
polyacrylate were a uniform light (robin's-egg) blue. The strips which had been incubated
in 1.0% dextran SO₄ were a uniform blue-violet. These differences were seen for all
three kinds of adsorbent and for both incubation buffers, though strip staining was
darker in citrate than in pyrophosphate.
[0120] Each strip was soaked for six hours at room temperature in 50 ml of 0.10
M acetate, 10% ethanol, pH 5.0. The dextran sulfate strips lost essentially no color
to the solvent. The strips incubated in polyacrylate lost over half of their color
to the solvent. The strips incubated in polyacrylate lost much less than half of their
color to the solvent. The water-incubated strips lost almost all of their color to
the solvent. Mechanical abrasion of the strips which did not remove support material
caused no significant loss of color. The nylon support was much more resistant to
abrasion than the papers.
[0121] These results demonstrate several things.
(1) The cationic adsorbents have no intrinsic affinity for TMB meriquinone.
(2) After loading with either of two polymeric anions, all three cationic adsorbents
bind easily visible amounts of the meriquinone, despite competition from buffer anions
which form insoluble meriquinone salts.
(3) The meriquinone-polyanion complexes have characteristic colors, green-blue for
polyacrylate and blue-violet for dextran sulfate, independent of the colors of the
buffer-anion salts formed simultaneoulsy in the same reaction mixture.
(4) The polyacrylate complex is not bound to the cationic adsorbents as tightly as
the dextran sulfate complex. This effect is expected because polyacrylate is much
less negatively charged than dextran sulfate.
(5) Nylon binds polyacrylate-meriquinone complex more tightly than the cationic papers
do. This effect also is unsurprising, because polyacrylate and nylon are both much
less hydrophilic than dextran sulfate and paper, and so might show some non-covalent
affinity via hydrophobic interactions.
(6) The complex ions completely permeate the polymeric supports in such a way as to
give the color great mechanical durability.
II. Neutral Adsorbents
[0122] The method used in Part A with cationic adsorbents was repeated with two uncharged
polymers manufactured in sheet form: nitrocellulose (0.45 µmeter) and nylon 66 (0.45
µmeter) membrane filters. The cationic nylon membrane was repeated as a positive control.
The only procedural change from Part A was to use 1-2 ng horseradish peroxidase per
8 ml well instead of 5 ng, so that meriquinone was generated more slowly. This change
caused almost all of the meriquinone to be adsorbed to the strips rather than deposited
as the citrate or pyrophosphate salt, presumably because most of the meriquinone had
a chance to diffuse to a strip before its concentration grew sufficiently to cause
precipitation.
[0123] The cationic nylon membrane strips performed as before. Regardless of buffer anion,
membranes pre-treated with dextran sulfate became blue-violet; membranes pre-treated
with water retained no color after less than an hour's soaking in 10⁻¹
M Na acetate, 10% ethanol, pH 5.0. None of the color of the poly-anion treated membranes
could be removed by overnight soaking in this solvent. The uncharged nylon membrane
performed identically to the cationic nylon membrane in all respects. The nitrocellulose
membranes differed from the others in one major respect: a uniform green color was
found on all membranes regardless of pre-treatment or buffer ion. Dextran sulfate
did not give a blue-violet deposit, and the water-treated membranes were almost as
dark as those which had seen poly-anion.
[0124] There are two major conclusions to be draw from this experiment:
(1) The polymeric anions have sufficient affinity for nominally neutral membranes
that adsorbents need not be restricted to cationic polymers.
(2) The TMB meriquinone has enough affinity for the most hydrophobic membrane tested,
nitrocellulose, that polymeric anion may not always be necessary. However, the color
formed on binding to nitrocellulose is not as dark as those seen on other membranes
treated with polymeric anions.
[0125] These experiments do not permit choice of the best adsorbent and immobilizing ion
for actual analytical procedures because no effort was made to operate near the optical
detection limit. The ability of meriquinone to bind to nitrocellulose without polymeric
anion does not imply that this interaction is tight enough or that the color is dark
enough to be analytically useful. As in Part A, the color formed on membranes completely
resisted mechanical removal, regardless of membrane composition.
[0126] The example provides a model for a wide array of analytical applications of the ionic
properties of the TMB meriquinone, wherein this colored indicator of oxidative (especially
peroxidative) activity is immobilized and localized via complexation with polymeric
anions which permeate and are strongly bound to polymeric supports. The interactions
immobilizing the polymeric anions may be ionic or hydrophobic or both, depending on
the choice of polymeric anion and of support. Such complex ions may have a strong
advantage over crystalline meriquinone salts, in that they are bound to the support
much more tightly than are crystals, in a way which defies mechanical disruption.
EXAMPLE 4
Immobilization on Ion Exchange Resins of the Meriquinone of TMB and of Its Complex
with Dextran Sulfate
[0127] Solutions of the meriquinone of TMB and of the meriquinone complex with dextran sulfate
were made by incubating approximately 1 µg of horseradish peroxidase at room temperature
with 50 ml volumes of 0.2 mg/ml TMB, 0.0015% H₂O₂, 10% ethanol in each of the following
buffers: 0.10
M sodium acetate, 1.0% dextran sulfate, and 0.10% dextran sulfate. All buffers were
adjusted with NaOH or HCl to give final pH values of 5.0 after the ethanol was added.
After 12 hours reaction the acetate reaction mixture was dark blue with no crystals
and the dextran sulfate reaction mixture was violet-black with no crystals. The preparations
were stored at 5°C until use; during this incubation, some crystals formed in the
acetate; none developed in either dextran sulfate solution.
[0128] Approximately 0.5 ml beds of the following ion-exchange polymers were poured at room
temperature in polypropylene disposable columns: carboxymethyl cellulose, carboxymethyl
Sepharose, sulfopropyl Trisacryl, diethylaminoethyl cellulose, and diethylaminoethyl
Sepharose. (Sepharose is a beaded agarose. Trisacryl is an especially hydrophilic
analogue of polyacrylamide, also cast in bead form.) Three columns were prepared of
each ion exchanger, one for each of the soluble meriquinone preparations described
above. After each bed was washed with at least 5 ml of 0.10 M sodium acetate, 0.001
M EDTA, 10% ethanol, pH 5.0, aliquots of each of the three meriquinone preparations
were added to separate columns of each exchanger and allowed to penetrate the columns;
then 2-10 ml volumes of the column equilibration buffer were used to wash any unbound
meriquinone through each column.
[0129] Three serial aliquots of meriquinone in acetate buffer were applied to a column containing
each ion exchanger: 0.10 ml, 0.50 ml, and 5.0 ml. For each of the cation exchangers,
all of the blue color stuck in a very tight band at the top of the column. Less than
20% of the column capacity was used in each case. No color could be washed from the
column in 0.10 M Na acetate, 10% ethanol, pH 5.0. For each of the anion exchangers,
all of the color washed directly through the column. A few crystals of the acetate
salt of the meriquinone which had formed during storage at 5°C were trapped mechanically
at the top of the columns and had to be dissolved by swirling in the elution buffer.
There was no sign of retention by ion-exchange interactions.
[0130] One 0.10 ml aliquot of meriquinone in 1% dextran sulfate was applied to a column
of each ion exchanger. The violet color was washed through the cation exchangers by
2-3 ml of solvent with no obvious retardation or retention. The columns were left
with very pale green colors, suggestive of slight competition between the ion exchanger
and the dextran sulfate for meriquinone. Two of the cation exchangers retained more
green color than the other; this fact suggests that the former have higher exchange
capacities or affinities for cations than the latter. The violet color was completely
retained in a band at the top of one anion exchanger column but was incompletely retained
by the other anion exchanger column. This fact suggests that the former has a higher
exchange capacity than the latter.
[0131] Two serial aliquots of meriquinone in 0.1% dextran sulfate were applied to and washed
through a column containing each exchanger: 0.10 ml and 0.40 ml. Again, all of the
violet color washed through each cation exchanger, leaving a pale green color which
was weaker in one than in the others. One anion exchanger column retained all of the
applied violet color, even after washing with 5 ml of 0.10 M Na acetate, 10% ethanol,
pH 5.0. The other anion exchanger column retained all of the violet color in the 0.10
ml aliquot of meriquinone, but passed about half of that in the following 0.40 ml
aliquot. Once more the substituted cellulose appeared to have higher exchange capacity
than the substituted Sepharose.
[0132] These results are in complete agreement with the following structural models for
the meriquinone and its complex with dextran sulfate. The meriquinone is a cation
which forms a very soluble acetate salt. As a cation, it binds well to cation exchangers
but not to anion exchangers. The tightness of binding supports the idea that the meriquinone
is a dication. It forms a tight complex with the polymeric anion, dextran sulfate.
At the molar ratios of meriquinone and polymeric anion used here, there is an excess
of negative charges on the dextran sulfate, so that the complex ion cannot precipitate,
binds tightly to anion exchangers, and does not bind to cation exchangers. However,
the net charge of the complex ion is so much higher than that of the meriquinone that
ion exchange adsorbents with similar ionic capacity will bind much less pigmentation
when it is attached to dextran sulfate than when it occurs as the uncomplexed meriquinone.
Because the ionic interaction between meriquinone and polymeric anion is reversible,
some meriquinone can escape the complex and bind to a cation exchanger when the complex
is passed through the latter. (The green color, indicative of partial dissociation
of the meriquinone into TMB and the quinone diimine, is commonly seen when the meriquinone
is present at low concentration in the absence of excess TMB).
[0133] This experiment provides a model for a wide array of analytical applications of the
ionic properties of the TMB meriquinone, wherein this colored indicator of oxidative
(especially peroxidative) activity is immobilized and localized on ion-exchange polymers.
It may be directly bound to negatively charged supports or complexed to a polymeric
anion which binds to positively charged supports. In this example, such complexation
occurred before immobilization. In such an application, too great an excess of polymeric
anion should be avoided. Otherwise, the limited exchange capacity of the support may
prevent all of the meriquinone from being bound. In Example 3, complexation of meriquinone
with polymeric anion occurred after the latter had been adsorbed to the support. Such
a strategy has two advantages. It lessens the likelihood of limitation by support
binding capacity for polymeric anion. It also is less likely to permit diffusion of
the meriquinone away from site of formation. This latter feature is important for
many analytical applications, where localization of peroxidative activity is as important
as the sensitivity-enhancing concentration of color in a small region.
EXAMPLE 5
Use of TMB to Visualize Nucleic Acid Hybridization on Genomic Southern Blots
I. Preparation of DNA Probes
[0134] The synthesis of N-biotinyl, N'-(4'-methylene trioxsalen)-3,6,9-trioxa-undecane-1,11,-diamine
and of 1-(biotinylamino)-13-(4,5',8-trimethylpsoralen-4'-yl)-3,6,9,12-tetraoxa-tridecane
are described in U.S. Patent No. 4,582,789 issued April 15, 1986. In addition, that
patent discloses the biotinylation of DNA using these compounds to prepare HLA-DPαprobes.
II. Hybridization of Probes to HLA Insert
[0135] Two µg of human DNA were digested with
BglII, electrophoresed through 1% agarose minigels, and transferred to a Genatran 45
charge-modified nylon membrane as described by Southern ((1975)
JMB 98:503-517). In some lanes biotinylated DNA molecular weight markers (described above)
and/or a positive control consisting of genomic DNA isolated from a homozygous typing
cell line WT51 (Tissue Antigen Laboratory, Imperial Cancer Research Fund, London,
England) digested with the same restriction endonuclease were included. After transfer
to the membrane the filter-bound human DNA was fixed on the membrane using the standard
procedure with base, neutralization with Tris-HCl buffer and baking at one hour or
longer at 80°C in a vacuum oven, as described by Southern,
supra. The membrane was then wetted with distilled water for one minute, and placed in
a sealable pouch. A prehybridization solution was then added to the membrane consisting
of 5 x Denhardt's solution with 50% formamide, 5 x SSPE, 0.5% (w/v) SDS, 0-10% (preferably
5%) dextran sulfate, and 150 µg/ml denatured herring sperm DNA (available from Sigma).
The membrane was incubated with the solution for 2-4 hours at 42°C. Then a hybridization
solution was added to the membrane in an amount of 0.1 ml solution/cm² membrane consisting
of 5 x Denhardt's solution with 50% formamide, 5 x SSPE, 0.5% (w/v) SDS, 0-10% dextran
sulfate, 150 µg/ml denatured herring sperm DNA (sheared before denaturation by repeated
passage through a 25 gauge hypodermic needle, and 50-200 ng per ml of either probe.
The membranes were incubated overnight (about 14-18 hours) at about 42°C. The membranes
were then washed three times for five minutes each with shaking at room temperature
in 2 x SSPE, 0.5% surfactant and three times at 60°C for five minutes with shaking
in 0.2-0.3 x SSPE, 0.5% Tween 20 to produce a probe-hybridized Southern blot.
III. Horseradish Peroxidase-Streptavidin (HRP-SA) Conjugate Preparation
[0136] Horseradish peroxidase (HRP) quantities were calculated from an assumed molecular
weight of 40,000 g/mole and an assumed A₄₀₂, 1cm, 0.1% of 2.5. Streptavidin (SA) quantities
were calculated form an assumed molecular weight of 60,000 g/mole and an assumed A₂₈₀,
1 cm, 0.1% of 3.0.
[0137] To 40 mg of HRP, dissolved in 1.9 ml of 0.10
M Na phosphate, pH 7.5, and dialyzed at 4 C against the same buffer, were added 0.14
ml of 14 mg/ml mal-sac-HNSA ester dissolved in the same buffer. [mal-sacHNSA ester
(where HNSA = 4-hydroxy-3-nitrobenzene sulfonic acid) is prepared as follows. Bhatnagar
et al.,
Peptides:Synthesis-Structure-Function, ed. by D. Rich et al. (Rockford:Pierce Chemical Co., 1981), p. 97-100, describes
a method for preparing DNP-SAC and TNP-SAC esters using as the acid N-maleimido-6-aminocaprioc
acid that may be used to prepare the mal-sac HNSA ester. The HNSA ester is also described
by Nitecki et al.,
High-Technology Route to Virus Vaccines (American Society for Microbiology: 1986) in a chapter entitled "Novel Agent for
Coupling Synthetic Peptides to Carriers and Its Application".] This mixture was incubated
for 105 min at room temperature, desalted on a 10.5 ml column of Sephadex G-25 equilibrated
with 0.010
M Na phosphate, 0.005
M EDTA, pH 6.0, and dialyzed at 4 C against three 200 ml volumes of the same buffer.
The maleimide content of the derivatized HRP was assayed by diluting 0.2 mg in 0.50
ml 0.10
M Na phosphate, 0.005
M EDTA, pH 7.0, adding 20 µl of 0.74
mM cysteine, incubating 5 min at room temperature, adding 33 µl of 4 mg/ml 5,5'-dithiobis(2-nitrobenzoic
acid), incubating 2 min at room temperature, and measuring A₄₁₂ in a spectrophotometer.
The difference in ΔA₄₁₂ between this reaction and one for a control mixture to which
no protein had been added, divided by the Δε₄₁₂ of 1.36 x 10⁴
M⁻¹ cm⁻¹, gave the molarity of maleimide in the diluted HRP.
[0138] Fifteen mg of SA were dissolved in 1.5 ml of 0.10
M Na phosphate, pH 8.0, dialyzed at 4 C against three 200 ml volumes of the same buffer,
and diluted to a concentration of 6 mg/ml in the same buffer. S-acetyl mercaptosuccinic
anhydride (SAMCA) was dissolved in dimethyl formamide at a concentration of 8.8 mg/ml.
To 12 mg of dialyzed SA were added 125 µl of this SAMCA solution with gentle stirring
at room temperature over about 1 min. After 30 min incubation at room temperature,
the reaction mixture was desalted on a 10.5 ml column of Sephadex G-25 equilibrated
with 0.10
M TrisCl, 0.005
M EDTA, pH 6.8. The pooled protein was dialyzed at 4 C against three 200 ml volumes
of the same buffer. The dialyzed derivatized SA was concentrated at room temperature
to 10 mg/ml in an ultrafiltration device with a YM10 membrane. Ten mg of concentrated
SA were mixed with 0.5 ml of 1.0
M hydroxylamine in 0.10
M TrisCl, 0.005
M EDTA, pH 6.8 with gentle stirring. After a 30 min incubation at room temperature
the SA was desalted on a 10.5 ml column of Sephadex G-25 equilibrated with 0.010
M Na phosphate, 0.005
M EDTA, pH 6.0. A small aliquot of the pooled protein peak was assayed for reactive
thiols by measuring the change in A₄₁₂ after adding 5,5'-dithiobis(2-nitrobenzoic
acid) to a concentration of 1
mM in 0.10
M Na phosphate, pH 8.0.
[0139] The assays of maleimide on HRP and of thiols on SA were done immediately before mixing
them to perform the coupling reaction. Then 3.95 ml of 13.0 mg/ml HRP bearing 0.67
maleimides/HRP were mixed in an ice bath with 2.47 ml of 4.19 mg/ml SA bearing 9.66
thiols/SA. After a 24 hr incubation at 5 C, the unreacted thiols were blocked by adding
0.47 ml of 4.6 mg/ml N-ethyl maleimide dissolved in 0.010
M Na phosphate, 0.005
M Na EDTA, pH 6.0 and incubating at room temperature for 30 min.
[0140] The reaction mixture was fractionated into conjugate pools of different mean HRP/SA
molar ratio, separated from unreacted HRP, by gel filtration chromatography on a 2.5
x 80 cm column at 4 C in 0.10
M Na phosphate, pH 6.8, at a flow rate of 3 cm/hr. The composition of the conjugate
pools was estimated spectrophotometrically from the A₄₀₂/A₂₈₀ ratio and quantitated
accurately by densitometric scanning of a green-stained 5-20% gradient SDS-PAGE gel,
run under reducing conditions. Approximately 10 mg of mixed 2-mer and 3-mer (species
containing 2 HRP:SA and 3 HRP:SA) and 5 mg of fairly pure 1-mer were recovered from
gel filtration. These conjugate pools, containing no detectable uncoupled SA or HRP,
were stored at 4 C for many months with negligible loss of protein or HRP catalytic
activity. The mixture of 2-mer and 3-mer was used preferentially in detecting biotinylated
DNA probe hybridized to human genomic Southern Blots, but 1-mer gave almost the same
intensity of staining.
IV. Probe Detection
[0141] All operations took place at room temperature. The probe-hybridized Southern blot
from Section II was rinsed once in 35 ml of phosphate-buffered saline (2.7
mM KCl, 136.9
mM NaCl, 1.5
mM KH₂PO₄ and 8 mM Na₂HPO₄) to which had been added 0.1
M NaCl and 5% Triton X-100 (Buffer A). After 5 min of gentle agitation, the rinse
solvent was replaced with Buffer A containing HRP-SA at a concentration such that
the component HRP was present at 0.3 µg/ml. The amount of Buffer A plus HRP-SA was
0.5-1 ml/cm² of membrane. Conjugate was incubated with the membrane for 20 min with
or without agitation. Then the membrane was removed to a clean Petri dish and rinsed
5 times with 45 ml volumes of Buffer A to which had been added 0.15 M 1,1-diethylurea
and 1% Na dextran sulfate (Buffer B). These 5-minute washes with gentle agitation
were followed by one 5-minute wash with gentle agitation in 10
mM Na citrate, 10
mM Na EDTA, pH 5.0 (Buffer C) containing 0.1 mg/ml TMB. At this point, the membrane
was incubated undisturbed in 50 ml of Buffer C containing 0.1 mg/ml TMB and 0.0014%
H₂O₂. Over 15-60 minutes, dark blue bands developed on the membrane wherever biotinylated
DNA was located - either biotinylated λ DNA fragments used as molecular weight standards
or biotinylated probe hybridized to targeted DNA. When satisfactory contrast was obtained,
the substrate solution was drained from the membrane, which was rinsed four times
for five minutes each with 50 ml water with gentle agitation. The washed membrane
was stored in water in a sealed test tube or plastic bag in the dark at room temperature,
4°C, or -20°C.
[0142] When 2 µg of DNA form a human subject bearing the DQα HLA gene were subjected to
the analysis just described, and the Southern blot was hybridized with a circular
DNA probe containing a DQα insert and covalently tagged with 0.05 moles of BP3 per
mole of DNA base pair, the pattern obtained after HRP-TMB visualization contained
two bands of equal intensity, one at 2.3 kilobases and one at 4.7 kilobases, relative
to biotinylated molecular weight standards on the same blot. When citrate in buffer
C was replaced by pyrophosphate or sulfate, ions which Example 1 shows to give meriquinone
salts with much darker colors than citrate does, the Southern blot color was unchanged.
When dextran sulfate was removed from the hybridization protocol, no permanent pattern
was formed on the Southern blot. When neutral nylon membranes, rather than cationic
charge-modified membranes like that of Example 3 or that of this example, were used
to make the Southern blot, the meriquinone-stained band pattern also was very labile
and tended to diffuse from the surface of the membrane into solution, if but only
if dextran sulfate was not added to Buffer B. These observations suggest that in Southern
blots prepared as described above, some of the dextran sulfate used in the hybridization
step binds to the cationic membrane and permits immobilization of the meriquinone
formed during probe detection. Addition of dextran sulfate during the washes after
conjugate incubation can compensate for poor retention of dextran sulfate from hybridization.
EXAMPLE 6
Use of TMB to Visualize Immuno Blots
I. Immunoblot Preparation
[0143] The eukaryotic cell lines noted below were grown to near confluence in DME tissue
culture media supplemented with 5% fetal calf serum. Whole-cell extracts were prepared
by aspirating the tissue culture medium, and adding lysis buffer (0.20
M LiCl, 0.020
M Tris Cl, 0.001
M EDTA, 0.5% Nonidet P-40, and 0.05% aprotinin, pH 8.0) directly to the tissue culture
plates. The resulting clear solution was mixed with an equal volume of 5% SDS, 1
M dithiothreitol, 10% glycerol, 0.005% bromphenol blue, 0.125
M Tris Cl, pH 6.8. Fifty µl samples were fractionated by SDS-PAGE in a 3.5 x 4 cm 12%
polyacrylamide gel (Laemmli (1970),
Nature 227:680-685).
[0144] Immunoblotting of the gel onto nitrocellulose (Schleicher and Schuell, 0.45 µmeter)
was performed in a Bio-Rad Trans-blot cell at 35 V for one hour at room temperature
essentially according to published methods (Towbin et al. (1979)
Proceedings of the National Academy of Sciences, USA 76:4350-4354; Bittner et al. (1980)
Analytical Biochemistry 102:459-471; Burnette et al. (1981)
Analytical Biochemistry 112:195-203). Following transfer nonspecific antibody binding sites on the nitrocellulose
were blocked by incubation for 30 minutes at room temperature with gentle agitation
in 250 ml of 5% nonfat dry milk, 1% ovalbumin, 1 M glycine. Then the blot was washed
three times with gentle agitation at room temperature for five minutes each in 250
ml volumes of 0.1% nonfat dry milk, 0.1% Tween 20, 0.15 M NaCl, 17.5 mM KH₂PO₄, 14.74
mM NaOH, pH 7.4, and incubated with gentle agitation for three hours at room temperature
in 5 ml of a 1/400 dilution in the preceding buffer of rabbit antiserum against a
synthetic oligopeptide with the amino acid sequence corresponding to amino acids 29
to 44 of the
ras oncogene. After washing three times as described above, the blot was incubated for
one hour at room temperature with 5 ml of a 1/3000 dilution of goat anti-rabbit IgG
conjugated to horseradish peroxidase and washed again three times as above.
II. TMB Detection of Immobilized HRP Immunoconjugate
[0145] The immunoconjugate-treated blot was soaked at room temperature without agitation
for five minutes in 50 ml of 0.10
M Na fumarate, 0.0001
M EDTA, pH 4.8 and then for 30-60 mintues in 50 ml of freshly prepared 0.10
M Na fumarate, 0.001
M EDTA, 5% ethanol, 0.1 mg/ml TMB, 0.00075% H₂O₂. When the pattern had reached the
desired degree of contrast between specifically stained bands and background, the
blot was soaked for 30-60 minutes in 50 ml of 0.10
M Na fumarate, 0.001
M EDTA, pH 4.8, before drying at room temperature between two sheets of blotting paper.
III. 3,3'-Diaminobenzidine (DAB) Detection of Immobilized HRP Immuno-Conjugates
[0146] The immunoconjugate-treated blot was incubated without agitation at room temperature
for 10 minutes in 50 ml of 0.1 M Tris Cl, pH 7.4, containing 25 mg of DAB and 0.03%
H₂O₂. After 15 minutes of washing in circulating distilled water, the blot was dried
between two sheets of blotting paper.
[0147] Figure 3 compares the use of TMB and DAB to visualize specific polypeptides from
whole-cell extracts of eukaryotic cells after immunoblotting. Panels 1 and 2 were
stained via TMB oxidation. Panel 3 was stained via DAB oxidation. Panel 4 was stained
for protein with Amido Black. All four panels represent immunoblots prepared identically
except for the sample subjected to SDS-PAGE. Panel 4 represents a commercial mixture
of proteins serving as molecular-weight markers. The molecular weight values are (from
top to bottom): 92, 66, 45, 31, 20, and 14 KD, respectively.
[0148] Panel 1 represents whole-cell extracts from a mouse cultured cell line, K-balb (left
lane) and a rat cultured cell line, Kp6 (right lane), probed on the immunoblot with
an antiserum (onc 29) prepared by inoculation of a rabbit with a synthetic polypeptide
(amino acids 29-44 of the 21 KD protein coded by the
ras oncogene) conjugated to keyhole limpet hemocyanin and subsequently blocked by incubation
with the same synthetic polypeptide conjugated to bovine serum albumin. Panels 2 and
3 are duplicate immunoblots of whole-cell extracts from three cell lines: "Hs242"
(left lane), K-balb (center lane), and Kp6 (right lane), probed with the same anti-p21
(
ras) rabbit antiserum used for Panel 1, unblocked by the serum albumin-coupled antigenic
oligopeptide. K-balb and Kp6 are described by Clark et al. (1985)
Proc. Natl. Acad. Sci. (USA) 82:5280-5284. "Hs242" is a murine cell line created by transformation of the NIH 3T3
line with the activated
ras p21 gene from a cell line derived from a human lung adenocarcinoma (Yuasa et al.
(1983)
Nature 303:775-779).
[0149] Comparison of Panels 2 and 3 of Figure 3 shows that TMB visualization is two to four-fold
more sensitive than DAB visualization, for immunoblots. The naturally occurring polypeptide,
p21, identified by the rabbit antiserum, onc 29, has a molecular weight of 21 KD according
to the immunoblot, and is not detected when the antiserum has been blocked by the
immunogenic shorter polypeptide used to elicit the anti-p21 antibody (Panel 1).
[0150] The above examples show improved performance of Western blots and Southern blots
when TMB is used as a horseradish peroxidase substrate under conditions where the
added anion helps to localize the developed color. This technology has permitted attainment
of the DNA probes detection limit goal on human genomic Southern blots and identification
of the
ras p21 antigen on Western blots of cell extracts.
EXAMPLE 7
Detection of HRP in Solution by Filter-Trapping the Fumarate Salt of the Meriquinone
of TMB
[0151] A fumarate-buffered HRP assay solution was prepared by mixing 50 µl of 0.60
M H₂O₂ (in water), 50 µl of 0.060
M 3,3',5,5'-tetramethylbenzidine (TMB, in 95% ethanol), 40 µl of 0.25 M sodium EDTA,
pH 7.2, 1.00 ml of 0.100 M sodium fumarate, pH 3.60, and 9.00 ml of deionized water.
The final solution was 3.0
mM H₂O₂, 0.31
mM TMB, 1.0
mM EDTA, 10
mM fumarate, pH 3.92. Stock HRP solutions were prepared in 0.10
M NaCl, 1.0
mM Na phosphate, pH 6.0 to be 22 ng/ml or 0.43 ng/ml in HRP, shortly before assay. HRP-catalyzed
oxidation of TMB by H₂O₂ was initiated by adding 20 or 2.0 µl of 22 ng/ml HRP or 20
or 10 µl of 0.43 ng/ml HRP to 1.00 ml of the assay solution at 25°C. At the two higher
HRP concentrations (11 and 1.1
pM in the cuvette), the generation of meriquinone was monitored at 652 nm in a spectrophotometer
for five minutes. At the two lower HRP concentrations (0.22 and 0.11
pM in the cuvette), the reaction was followed for 30 minutes. At the end of each reaction
interval, replicate 100 µl volumes of reaction mixture were spotted on a polycarbonate
filter (3 µm pore size) and dried by gentle suction to give deposits 3-4 mm in diameter.
[0152] The kinetic trances for these reactions showed the initial slopes expected for the
respective HRP concentrations. However, after an interval of 1-10 minutes (increasing
as the HRP concentration was lowered), the traces leveled off abruptly, often showing
a sharp dip. This behavior, uncharacteristic of assays performed in buffers which
do not readily precipitate the meriquinone, such as citrate and acetate, indicates
the nucleation of product crystals, in this case the fumarate salt of the meriquinone.
After nucleation, replicate traces diverge considerably because of the random nature
of crystal nucleation and growth. For each of the four reactions, 3 µm filtration
of 100 µl volumes of reaction mixture left blue deposits, clearly visible to the unaided
eye, which were stable during standing for over a week at room temperature exposed
to ambient visible light (from fluorescent fixtures).
[0153] Table V summarizes the results from the reactions. The initial velocity was transformed
from units of absorbance per time to reciprocal time (turnover number) by dividing
by the meriquinone extinction coefficient, 3.9 x 10⁴ M⁻¹cm⁻¹, and by the HRP concentration.
The uniformity of the turnover number over two orders of magnitude of HRP concentration
and the fact that these turnover number values equaled those seen in non-precipitating
buffers indicate that the only effect of fumarate is on product solubility. The transition
time is the time to crystal nucleation. These data show that when the presence of
HRP is monitored visually by observing the crystals of meriquinone fumarate salt which
can be trapped by a 3 µm filter, the HRP detection limit in 100 µl of reaction mixture
would be below 1.1 x 10⁻¹⁶ moles for five minutes of reaction and below 1.1 x 10⁻¹⁷
moles for 30 minutes of reaction. The A₆₅₂ of the 30 minute reaction mixture for 0.11
pM HRP was below 0.03, the approximate visual threshold, so that filtration trapping
served to concentrate the signal to improve visibility. As some blue color was observed
to penetrate these ultra-thin straight-channel filter membranes, additional sensitivity
could be obtained by using a smaller pore size, a depth filter, or an anionic membrane.
In addition, a white membrane would offer sharper visual contrast than the slightly
yellow, translucent, polycarbonate. The transition time has a very shallow HRP concentration
dependence, so that even lower HRP concentrations are unlikely to require assay times
longer than 30 minutes in order to permit crystallization to occur. The transition
time probably could be lowered by adding anionic latex microspheres which might serve
to nucleate crystallization.
[0154] This experiment is a model for the use of precipitation of the TMB meriquinone by
effective anions as a method of trapping the HRP reaction product for visual detection
in rapid enzyme immunoassays. These analyses, which are becoming popular in clinical
diagnostics, follow a general format in which a body fluid or extract of a body fluid
is incubated with a capture surface and with an enzyme-tagged probe antibody specific
for the analyte of interest, filtered and washed to remove extraneous components of
the test sample and excess probe conjugate, incubated with enzyme assay buffer, and,
in those cases where the colored enzyme reaction product is insoluble or immobilizable,
filtered and washed again to end the enzymatic reaction and limit background development.
The capture surface may be the filter membrane itself or particles suspended in the
fluid over the membrane, and may bind the analyte by chemisorption or be derivatized
with an antibody or other binding protein with some specificity for the analyte. In
any of these cases, the enzyme detection step is very much the same, and the colored
product must be trapped in some fashion if filtration and washing is to be used to
stop the reaction and preserve the signal.
EXAMPLE 8
Controlling the Solubility of the Meriquinone of TMB with Ionic Strength
[0155] The insoluble dextran sulfate salt of the TMB meriquinone was made in two steps.
First the soluble meriquinone was made by adding 5.0 ml of 2.0 mg/ml TMB (in 95% ethanol),
25 µl of 3% H₂O₂ (in H₂O), and 20 µl of 20 mg/ml HRP (in phosphate-buffered saline)
to 45.0 ml of 0.010
M Na acetate buffer, pH 4.81. The final solution, pH 5.02, was 0.83
mM in TMB and 0.44 mM in H₂O₂; it turned deep blue within seconds. Then, after incubation
at room temperature for at least 30 minutes, 800-850 µl of 1% dextran sulfate (in
water; 500 KD dextran sulfate) were added to form instantaneously a deep violet suspension
which settled over 30 minutes at room temperature to leave a colorless supernatant.
The sediment was harvested by centrifugation and washed several times with deionized
H₂O before storage at 4°C.
[0156] To study the ionic strength dependence of meriquinone solubility, sodium acetate
buffers of pH 4.96-5.02 were made with total acetate concentrations of 0.010, 0.025,
0.050, 0.100, 0.200, and 0.400
M. At this pH the ionic strength values should be 64% of the acetate concentrations.
To a 2 ml volume of each buffer was added approximately 10 mg of solid TMB and 5 mg
of damp meriquinone-dextran sulfate salt. These mixtures were Vortex mixed for a total
of about four minutes each at 23°C before centrifuging and carefully removing the
supernatant solutions with Pasteur pipet. The 260-800 nm spectra were recorded in
a spectrophotometer. Mixing, spinning, and scanning were repeated twice to give a
total of three sets of absorbance values to check for equilibration. The absorbance
values either remained constant or declined somewhat with repeated measurement, indicating
that the first mixing sufficed to reach equilibrium.
[0157] Meriquinone solubility was approximately proportional to ionic strength for acetate
concentrations up to 0.4
M (ionic strengths up to 0.26), showing a fifty-fold increase from .01 to .4
M acetate. At acetate concentrations of 10⁻²
M or less, dissolved meriquinone was barely detectable at 652 nm (A₆₅₂ <0.008) when
it was in equilibrium with a salt containing charge-equivalent amounts of meriquinone
and dextran sulfate. Such a low concentration is visually undetectable. The acetate
concentration dependence of TMB solubility was also measured in the same way as meriquinone
solubility, except that the meriquinone salt was omitted from the incubations and
dissolved TMB was monitored at 285 nm. In this case, solubility showed a gentle and
linear decline with increasing acetate, totaling 15% from 0.01 to 0.4
M acetate. In 0.4
M acetate at pH 5.0, the solubility of the meriquinone dextran sulfate salt almost
equalled that of TMB.
[0158] Acetate was chosen to control ionic strength because the TMB acetate salt was already
known to be very soluble, so that precipitation of the acetate salt was not expected
to interfere with the salt dependence of the solubility of the meriquinone salt. The
strong salt concentration dependence of the meriquinone solubility is consistent with
the ionic nature of the interaction between meriquinone dictation and polyanion. The
slight decline in TMB solubility with increasing ionic strength is consistent with
the molecular nature of the crystal of TMB, a relatively hydrophobic molecule. These
data have obvious practical consequences. The washing of assays visualized with TMB,
H₂O₂, and peroxidase or some other oxidation catalyst should be done at very low ionic
strength to facilitate the removal of excess TMB and minimize the loss of signal through
dissolution of the immobilized meriquinone. Often water should suffice as a wash solvent.
On the other hand, there may be applications where it is desired to remove the signal
generated by one probe in order to test a sample with a probe of different specificity.
In that case, a wash in high ionic strength should suffice to remove all the meriquinone
without subjecting the sample to harsh chemical conditions.
EXAMPLE 9
Detection of Sickle-cell and Normal Alleles of β-globin Locus
[0159] Two probes were made by cloning the 676 and 627 base pair
Sau3AI fragments from the 1.9-kilobase pair
BamHI fragment in the 5' part of the β-globin gene (in accordance with Fritsch et al.
(1980)
Cell,
19:959-972) into the
BamHI site of M13mp10 in accordance with Messing, J. (1983)
Meth. Enzymol.,
101:20-78. DNA probes were prepared by hybridizing the single-stranded M13 DNA containing
the desired DNA insert to
BamHI linearized M13 replication form essentially as described by Courage-Tebbe, U. and
Kemper, B. (1982)
BBA,
697:1-5. The resulting M13 derivatives were photolabeled with a biotinylated psoralen
derivative, N-biotinyl, N'-(4'-methylene trioxsalen)-3,6,9-trioxa-undecane-1,11-diamine
as described in U.S. Patent No. 4,582,789,
supra. This resulted in probes labeled with 5-10 biotinylated psoralen moieties per 100
base pairs of double-stranded DNA as determined by measuring the absorbance at 333
nm as described by Cimino et al. (1985)
Ann. Rev. Biochem.,
54:1151-1193 and using a standard curve relating optical density and the incorporation
of (3H) biotinylated psoralen.
[0160] Human DNA was purified from tissue culture cells or from blood by using a method
described by Stetler et al. (1982)
PNAS,
79:5966-5979. Homozygous hemoglobin delta-beta deletion DNA was from GM2064 cells (Human
Genetic Mutant Cell Repository, Camden, NJ), hemoglobin beta S/beta S DNA was from
SC-1 cells described by Saiki et al. (1985)
Bio/Technology,
3:1008-1012, hemoglobin beta S/beta A DNA was from the blood of an individual with
sickle-cell trait, and hemoglobin beta A/beta A DNA was from HL60 cells described
by Collins et al. (1978)
PNAS,
75:2448-2462. DNA digestion with
SauI and other restriction endonucleases was performed according to Maniatis et al. (1982)
Molecular Cloning (Cold Spring Harbor Laboratory), pp. 382-389. To provide molecular weight standards
that allow coincident nonisotopic detection, bacteriophage lambda
BstEII fragments were labeled with biotinylated psoralen as described by U.S. Patent
4,582,789,
supra. The molecular weight standards and restriction digested DNA samples were fractionated
by electrophoresis in neighboring lanes in 1% agarose gel in a buffer containing 0.04
M Tris-acetate, 0.002
M EDTA, pH 8.0. Blotting of the DNA samples to nylon membranes was carried out for
3-16 hours using 5 x SSPE as described by Maniatis et al.,
supra (20 x SSPE = 3.6
M NaCl, 200
mM NaH₂PO₄, 20
mM EDTA, pH 7.4).
[0161] The nylon membranes carrying the DNA samples were incubated in a prehybridization
mixture consisting of 5 x Denhardt's solution, 5 x SSPE, 150 mg/ml of denatured herring
sperm DNA, 0.5% sodium dodecyl sulfate, 5% sodium dextran sulfate, and 50% formamide
at 42 C for 2-6 hours and then drained. Next, 50 ng/ml of the first probe and 75 ng/ml
of the second probe were added to a separate stock of the same mixture that had been
prewarmed to 60 C and then combined with the membrane for overnight incubation at
42 C. After hybridization, the nylon membrane was washed and a streptavidin-horseradish
peroxidase conjugate and TMB were added under conditions as described in Example 5.
Color development was for one hour.
[0162] The nonisotopic probe system distinguished the 1.14-kb band characteristic of the
normal allele of the β-globin gene from the 1.34-kb fragment characteristic of the
sickle cell allele in the human DNA tested, correctly identifying all homozygous and
heterozygous genotypes.
Deposit
[0163] The deposit identified as the plasmid pDA318 in a MM294 host in U.S. Patent No. 4,582,789,
supra, was deposited with the American Type Culture Collection (ATCC) of Rockville, MD
20852 USA under accession no. 39,917 on November 8, 1984 pursuant to a contract between
the ATCC and the assignee of this patent application, Cetus Corporation. The contract
with ATCC provdes for permanent availability of the progeny of this plasmid-containing
host to the public on the issuance of the U.S. patent describing and identifying the
deposit or the publications or upon the laying open to the public of any U.S. or foreign
patent application, whichever comes first, and for availability of the progeny of
this host to one determined by the U.S. Commissioner of Patents and Trademarks to
be entitled thereto according to 35 USC §122 and the Commissioner's rules pursuant
thereto (including 37 CFR §1.14 with particular reference to 886 OG 638). The assignee
of the present application has agreed that if the host on deposit should die or be
lost or destroyed when cultivated under suitable conditions, it will be promptly replaced
on notification with a viable culture of the same host.
[0164] In summary, the present invention provides a chromophoric reaction product, the use
of which increases the sensitivity and lowers the detection limit of a wide range
of analyses of oxidative activity. The product is deposited as an insoluble salt or
immobilized complex at the site of catalytic activity in a gel or on the surface of
a solid phase and does not fade over time or migrate, resulting in diffuse signals.