[0001] This invention provides compounds having drug and bio-affecting properties, their
pharmaceutical compositions and their use in the manufacture of a medicament. In particular,
the invention is concerned with new heterocyclic amidopiperazine derivatives that
possess unique antiviral activity. More particularly, the present invention relates
to compounds useful for the treatment of HIV and AIDS.
[0002] HIV-1 (human immunodeficiency virus -1) infection remains a major medical problem,
with an estimated 33.6 million people infected worldwide. The number of cases of HIV
and AIDS (acquired immunodeficiency syndrome) has risen rapidly. In 1999, 5.6 million
new infections were reported, and 2.6 million people died from AIDS. Currently available
drugs for the treatment of HIV include six nucleoside reverse transcriptase (RT) inhibitors
(zidovudine, didanosine, stavudine, lamivudine, zalcitabine and abacavir), three non-nucleoside
reverse transcriptase inhibitors (nevirapine, delavirdine and efavirenz), and six
peptidomimetic protease inhibitors (saquinavir, indinavir, ritonavir, nelfinavir,
amprenavir and lopinavir). Each of these drugs can only transiently restrain viral
replication if used alone. However, when used in combination, these drugs have a profound
effect on viremia and disease progression. In fact, significant reductions in death
rates among AIDS patients have been recently documented as a consequence of the widespread
application of combination therapy. However, despite these impressive results, 30
to 50% of patients ultimately fail combination drug therapies. Insufficient drug potency,
non-compliance, restricted tissue penetration and drug-specific limitations within
certain cell types (e.g. most nucleoside analogs cannot be phosphorylated in resting
cells) may account for the incomplete suppression of sensitive viruses. Furthermore,
the high replication rate and rapid turnover of HIV-1 combined with the frequent incorporation
of mutations, leads to the appearance of drug-resistant variants and treatment failures
when sub-optimal drug concentrations are present (Larder and Kemp; Gulick; Kuritzkes;
Morris-Jones
et al; Schinazi
et al; Vacca and Condra; Flexner; Berkhout and Ren
et al; (Ref. 6-14)). Therefore, novel anti-HIV agents exhibiting distinct resistance patterns,
and favorable pharmacokinetic as well as safety profiles are needed to provide more
treatment options.
[0003] Currently marketed HIV-1 drugs are dominated by either nucleoside reverse transcriptase
inhibitors or peptidomimetic protease inhibitors. Non-nucleoside reverse transcriptase
inhibitors (NNRTIs) have recently gained an increasingly important role in the therapy
of HIV infections (Pedersen & Pedersen, Ref 15). At least 30 different classes of
NNRTI have been described in the literature (De Clercq, Ref. 16) and several NNRTIs
have been evaluated in clinical trials. Dipyridodiazepinone (nevirapine), benzoxazinone
(efavirenz) and bis(heteroaryl) piperazine derivatives (delavirdine) have been approved
for clinical use. However, the major drawback to the development and application of
NNRTIs is the propensity for rapid emergence of drug resistant strains, both in tissue
cell culture and in treated individuals, particularly those subject to monotherapy.
As a consequence, there is considerable interest in the identification of NNRTIs less
prone to the development of resistance (Pedersen & Pedersen, Ref 15). A recent overview
of non-nucleoside reverse transcriptase inhibitors: perspectives on novel therapeutic
compounds and strategies for the treatment of HIV infection. has appeared (
Buckheit, Robert W., Jr. Expert Opinion on Investigational Drugs 2001, 10(8), 1423-1442). A review covering both NRTI and NNRTIs has appeared (
Balzarini, J.; De Clercq, E.. Antiretroviral Therapy 2001, 31-62.). An overview of the current state of the HIV drugs has been published (
E. De clercq Journal of Clinical Virology, 2001, 22, 73-89).
[0004] Several indole derivatives including indole-3-sulfones, piperazino indoles, pyrazino
indoles, and 5H-indolo[3,2-b][1,5]benzothiazepine derivatives have been reported as
HIV-1 reverse transciptase inhibitors (Greenlee et al, Ref. 1; Williams et al, Ref.
2; Romero et al, Ref. 3; Font et al, Ref. 17; Romero et al, Ref. 18; Young et al,
Ref. 19; Genin et al, Ref. 20; Silvestri et al, Ref. 21). Indole 2-carboxamides have
also been described as inhibitors of cell adhesion and HIV infection (
Boschelli et al, US 5,424,329, Ref. 4). Finally, 3-substituted indole natural products (Semicochliodinol A and
B, didemethylasterriquinone and isocochliodinol) were disclosed as inhibitors of HIV-1
protease (Fredenhagen et al, Ref. 22).
[0005] Structurally related aza-indole amide derivatives have been disclosed previously
(Kato et al, Ref. 23; Levacher et al, Ref. 24;
Dompe Spa, WO-09504742, Ref. 5(a);
SmithKline Beecham PLC, WO-09611929, Ref. 5(b); Schering Corp.,
US-05023265, Ref. 5(c)). However, these structures differ from those claimed herein in that they
are aza-indole mono-amide rather than unsymmetrical aza-indole piperazine diamide
derivatives, and there is no mention of the use of these compounds for treating viral
infections, particularly HIV. Nothing in these references can be construed to disclose
or suggest the novel compounds of this invention and their use to inhibit HIV infection.
Patent documents
[0006]
- 1. Greenlee, W.J.; Srinivasan, P.C. Indole reverse transcriptase inhibitors. U.S. Patent 5,124,327.
- 2. Williams, T.M.; Ciccarone, T.M.; Saari, W. S.; Wai, J.S.; Greenlee, W.J.; Balani,
S.K.; Goldman, M.E.; Theohrides, A.D. Indoles as inhibitors of HIV reverse transcriptase.
European Patent 530907.
- 3. Romero, D.L.; Thomas, R.C.; Preparation of substituted indoles as anti-AIDS pharmaceuticals.
PCT WO 93 / 01181.
- 4. Boschelli, D.H.; Connor, D.T.; Unangst, P.C. Indole-2-carboxamides as inhibitors
of cell adhesion. U.S. Patent 5,424,329.
- 5. (a) Mantovanini, M.; Melillo, G.; Daffonchio, L. Tropyl 7-azaindol-3-ylcarboxyamides
as antitussive agents. PCT WO 95/04742 (Dompe Spa). (b) Cassidy, F.; Hughes, I.; Rahman, S.; Hunter, D. J. Bisheteroaryl-carbonyl and
carboxamide derivatives with 5HT 2C/2B antagonists activity. PCT WO 96/11929. (c) Scherlock, M. H.; Tom, W. C. Substituted 1H-pyrrolopyridine-3-carboxamides. U. S. Patent 5,023,265.
Other Publications
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[0008] The present invention comprises compounds of Formula I, their pharmaceutical formulations,
and their use in patients suffering from or susceptible to a virus such as HIV. The
compounds of Formula I, which include nontoxic pharmaceutically acceptable salts thereof,
have the formula and meaning as described below. Each embodiment of a particular aspect
of the invention depends from the preceding embodiment unless otherwise stated.
[0009] A first embodiment of a first aspect of the present invention are compounds of Formula
I, including pharmaceutically acceptable salts thereof,

wherein:
Q is

- - represents a bond;
A is
phenyl;
T is

U is NR7;
V is;
W is CR3;
X is CR4;
Y is CR5;
Z is CR6; R2, R3, R4, R5, and R6 are each independently selected from the group consisting of a bond, hydrogen, halogen,
cyano, nitro, X'R24, C1-6alkyl, C3-7cycloalkyl, C2-6alkenyl, C3-7cycloalkenyl, C2-6alkynyl, aryl, heteroaryl, heteroalicyclic, C(O)NR28R29, and CO2R25, wherein said C1-6alkyl, C3-7cycloalkyl, C2-6 alkenyl, C4-7cycloalkenyl, C2-6alkynyl, aryl, heteroaryl, and heteroalicyclic are optionally substituted with one
to nine same or different halogens or from one to five same or different substituents
selected from the substituents comprising group F;
R7 is selected from the group consisting of a bond and (CH2)rH, wherein r is 0-6;
m, and p are each 1;
F is selected from the group consisting of C1-6alkyl, hydroxy, C1-6alkoxy, cyano, halogen, benzyl, N-amido, NR30R31, C1-6alkylC(O)NR30R31, C(O)NR30R31, COOR32. and C1-6alkylCOOR32;
R9 is hydrogen or C1-6alkyl;
R11, R12, R13, R14, R15, R16, R17, and R18 are each independently selected from hydrogen, methyl or ethyl;
X' is selected from the group consisting of NR9, O, and S;
R24 is hydrogen or C1-6alkyl;
R25 is selected from the group consisting of hydrogen, C1-6alkyl, and C3-7cycloalkyl;
R28 and R29 are independently selected from the group consisting of hydrogen, C1-6alkyl, C3-7cycloalkyl, aryl, heteroaryl, and heteroalicyclic wherein said C1-6alkyl, C3-7cycloalkyl, aryl, heteroaryl, and heteroalicyclic are optionally substituted with
one to nine same or different halogens or C1-6alkyl groups;
R30 and R31 are independently selected from the group consisting of hydrogen, C1-6alkyl, C3-7cycloalkyl, aryl, wherein said C1-6alkyl, C3-7cycloalkyl, and aryl are optionally substituted with one to nine same or different
halogens;
R32 is selected from the group consisting of hydrogen, C1-6alkyl, and C3-7cycloalkyl;
provided that at any given time only one of the members selected from the group consisting
of R
2, R
3, R
4, R
5, R
6, R
7 and R
7' is a bond, and further provided that said bond is the point of attachment to the
adjacent carbon atom in the compound of Formula I.
[0010] Another embodiment of the first embodiment are compounds wherein U is NH and R
2 is the point of attachment to Q.
[0011] Another embodiment of the first embodiment are compounds wherein W,X,Y and Z are
each CH and R
7 is H.
[0012] A first embodiment of the second aspect of the present invention is a pharmaceutical
composition which comprises an antiviral effective amount of a compound of Formula
I, including pharmaceutically acceptable salts thereof, as defined in any of the prior
embodiments of the first aspect of the present invention, and one or more pharmaceutically
acceptable carriers, excipients or diluents.
[0013] A second embodiment of the second aspect of the present invention is the pharmaceutical
composition of the first embodiment of the second aspect, useful for treating infection
by HIV, which additionally comprises an antiviral effective amount of an AIDS treatment
agent selected from the group consisting of an AIDS antiviral agent; an anti-infective
agent; an immunomodulator; and HIV entry inhibitors.
[0014] A first embodiment of a third aspect of the present invention is the use of a compound
of Formula I, including pharmaceutically acceptable salts thereof, as defined in any
of the prior embodiments of the first aspect of the present invention, and one or
more pharmaceutically acceptable carriers, excipients or diluents for the manufacture
of a medicament for treating a mammal infected with a virus, wherein an antiviral
effective amount is to be administered to said mammal.
[0015] A second embodiment of a third aspect of the present invention is the use of the
first embodiment of the third aspect wherein an antiviral effective amount of a compound
of Formula I in combination with an antiviral effective amount of an AIDS treatment
agent selected from the group consisting of: an AIDS antiviral agent; an anti-infective
agent; an immunomodulator; and an HIV entry inhibitor, is to be administered to said
mammal.
[0016] The third embodiment of a third aspect of the present invention is the use of either
the first or second embodiment of the third aspect, wherein said virus is HIV.
[0017] Since the compounds of the present invention, may possess asymmetric centers and
therefore occur as mixtures of diastereomers and enantiomers, the present invention
includes the individual diastereoisomeric and enantiomeric forms of the compounds
of Formula I in addition to the mixtures thereof.
"Halogen" refers to chlorine, bromine, iodine or fluorine.
[0018] An "aryl" group refers to an all carbon monocyclic or fused-ring polycyclic (i.e.,
rings which share adjacent pairs of carbon atoms) groups having a completely conjugated
pi-electron system. Examples, without limitation, of aryl groups are phenyl, napthalenyl
and anthracenyl.
[0019] As used herein, a "heteroaryl" group refers to a monocyclic or fused ring (i.e.,
rings which share an adjacent pair of atoms) group having in the ring(s) one or more
atoms selected from the group consisting of nitrogen, oxygen and sulfur and, in addition,
having a completely conjugated pi-electron system. Examples, without limitation, of
heteroaryl groups are furyl, thienyl, benzothienyl, thiazolyl, imidazolyl, oxazolyl,
oxadiazolyl, thiadiazolyl, benzthiazolyl, triazolyl, tetrazolyl, isoxazolyl, isothiazolyl,
pyrrolyl, pyranyl, tetrahydropyranyl, pyrazolyl, pyridyl, pyrimidinyl, quinolinyl,
isoquinolinyl, purinyl, carbazolyl, benzoxazolyl, benzimidazolyl, indolyl, isoindolyl,
and pyrazinyl.
[0020] As used herein, a "heteroalicyclic" group refers to a monocyclic or fused ring group
having in the ring(s) one or more atoms selected from the group consisting of nitrogen,
oxygen and sulfur. The rings may also have one or more double bonds. However, the
rings do not have a completely conjugated pi-electron system. Examples, without limitation,
of heteroalicyclic groups are azetidinyl, piperidyl, piperazinyl, imidazolinyl, thiazolidinyl,
3-pyrrolidin-1-yl, morpholinyl, thiomorpholinyl and tetrahydropyranyl.
[0021] An "alkyl" group refers to a saturated aliphatic hydrocarbon including straight chain
and branched chain groups. Preferably, the alkyl group has 1 to 20 carbon atoms (whenever
a numerical range; e.g., "1-20", is stated herein, it means that the group, in this
case the alkyl group may contain 1 carbon atom, 2 carbon atoms, 3 carbon atoms, etc.
up to and including 20 carbon atoms). More preferably, it is a medium size alkyl having
1 to 10 carbon atoms. For example, the term "C
1-6 alkyl" as used herein and in the claims (unless specified otherwise) mean straight
or branched chain alkyl groups such as methyl, ethyl, propyl, isopropyl, butyl, isobutyl,
t-butyl, amyl, hexyl and the like.
[0022] A "cycloalkyl" group refers to a saturated all-carbon monocyclic or fused ring (i.e.,
rings which share and adjacent pair of carbon atoms) group wherein one or more rings
does not have a completely conjugated pi-electron system. Examples, without limitation,
of cycloalkyl groups are cyclopropane, cyclobutane, cyclopentane, cyclohexane, cycloheptane,
and adamantane.
[0023] A "cycloalkenyl" group refers to an all-carbon monocyclic or fused ring (i.e., rings
which share and adjacent pair of carbon atoms) group wherein one or more rings contains
one or more carbon-carbon double bonds but does not have a completely conjugated pi-electron
system. Examples, without limitation, of cycloalkenyl groups are cyclopentene, cyclohexadiene,
and cycloheptatriene.
[0024] An "alkenyl" group refers to an alkyl group, as defined herein, consisting of at
least two carbon atoms and at least one carbon-carbon double bond.
[0025] An "alkynyl" group refers to an alkyl group, as defined herein, consisting of at
least two carbon atoms and at least one carbon-carbon triple bond.
[0026] A "hydroxy" group refers to an -OH group.
[0027] An "alkoxy" group refers to both an -O-alkyl and an -O-cycloalkyl group as defined
herein.
[0028] An "O-carboxy" group refers to a R"C(O)O-group, with R" as defined herein.
[0029] An "amino" group refers to an -NH
2 group.
[0030] A "N-amido" group refers to a R
xC(=O)NR
y- group, with R
x selected from the group consisting of alkyl, cycloalkyl, aryl, heteroaryl, and heteroalicyclic
and R
y selected from hydrogen or alkyl.
[0031] A "cyano" group refers to a -CN group.
[0032] It is known in the art that nitrogen atoms in heteroaryl systems can be "participating
in a heteroaryl ring double bond", and this refers to the form of double bonds in
the two tautomeric structures which comprise five-member ring heteroaryl groups. This
dictates whether nitrogens can be substituted as well understood by chemists in the
art. The disclosure and claims of the present invention are based on the known general
principles of chemical bonding. It is understood that the claims do not encompass
structures known to be unstable or not able to exist based on the literature.
[0033] Physiologically acceptable salts and prodrugs of compounds disclosed herein are within
the scope of this invention. The term "pharmaceutically acceptable salt" as used herein
and in the claims is intended to include nontoxic base addition salts. Suitable salts
include those derived from organic and inorganic acids such as, without limitation,
hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid, methanesulfonic
acid, acetic acid, tartaric acid, lactic acid, sulfinic acid, citric acid, maleic
acid, fumaric acid, sorbic acid, aconitic acid, salicylic acid, phthalic acid, and
the like. The term "pharmaceutically acceptable salt" as used herein is also intended
to include salts of acidic groups, such as a carboxylate, with such counterions as
ammonium, alkali metal salts, particularly sodium or potassium, alkaline earth metal
salts, particularly calcium or magnesium, and salts with suitable organic bases such
as lower alkylamines (methylamine, ethylamine, cyclohexylamine, and the like) or with
substituted lower alkylamines (e.g. hydroxyl-substituted alkylamines such as diethanolamine,
triethanolamine or tris(hydroxymethyl)- aminomethane), or with bases such as piperidine
or morpholine.
[0034] In the use of the present invention, the term "antiviral effective amount" means
the total amount of each active component of the method that is sufficient to show
a meaningful patient benefit, i.e., healing of acute conditions characterized by inhibition
of the HIV infection. When applied to an individual active ingredient, administered
alone, the term refers to that ingredient alone. When applied to a combination, the
term refers to combined amounts of the active ingredients that result in the therapeutic
effect, whether administered in combination, serially or simultaneously. The terms
"treat, treating, treatment" as used herein and in the claims means preventing or
ameliorating diseases associated with HIV infection.
[0035] The present invention is also directed to combinations of the compounds with one
or more agents useful in the treatment of AIDS. For example, the compounds of this
invention may be effectively administered, whether at periods of pre-exposure and/or
post-exposure, in combination with effective amounts of the AIDS antivirals, immunomodulators,
antiinfectives, or vaccines, such as those in the following table.
| |
ANTIVIRALS |
|
| Drug Name |
Manufacturer |
Indication |
| 097 |
Hoechst/Bayer |
HIV infection, AIDS, ARC (non-nucleoside reverse transcriptase (RT) inhibitor) |
| |
|
|
| Amprenivir 141 W94 GW 141 |
Glaxo Wellcome |
HIV infection, AIDS, ARC (protease inhibitor) |
| |
|
|
| Abacavir (1592U89) GW 1592 |
Glaxo Wellcome |
HIV infection, AIDS, ARC (RT inhibitor) |
| |
|
|
| Acemannan |
Carrington Labs (Irving, TX) |
ARC |
| |
|
|
| Acyclovir |
Burroughs Wellcome |
HIV infection, AIDS, ARC, in combination with AZT |
| |
|
|
| AD-439 |
Tanox Biosystems |
HIV infection, AIDS, ARC |
| |
|
|
| AD-519 |
Tanox Biosystems |
HIV infection, AIDS, ARC |
| |
|
|
| Adefovir dipivoxil AL-721 |
Gilead Sciences Ethigen (Los Angeles, CA) |
HIV infection ARC, PGL HIV positive, AIDS |
| |
|
|
| Alpha Interferon |
Glaxo Wellcome |
Kaposi's sarcoma, HIV in combination w/Retrovir |
| |
|
|
| Ansamycin LM 427 |
Adria Laboratories (Dublin, OH) Erbamont (Stamford, CT) |
ARC |
| |
|
|
| Antibody which Neutralizes pH Labile alpha aberrant Interferon |
Advanced Biotherapy Concepts (Rockville, MD) |
AIDS, ARC |
| |
|
|
| AR177 |
Aronex Pharm |
HIV infection, AIDS, ARC |
| |
|
|
| Beta-fluoro-ddA |
Nat'l Cancer Institute |
AIDS-associated diseases |
| |
|
|
| BMS-232623 (CGP-73547) |
Bristol-Myers Squibb/ Novartis |
HIV infection, AIDS, ARC (protease inhibitor) |
| |
|
|
| BMS-234475 (CGP-61755) |
Bristol-Myers Squibb/ Novartis |
HIV infection, AIDS, ARC (protease inhibitor) |
| |
|
|
| CI-1012 |
Warner-Lambert |
HIV-1 infection |
| |
|
|
| Cidofovir |
Gilead Science |
CMV retinitis, herpes, papillomavirus |
| |
|
|
| Curdlan sulfate |
AJI Pharma USA |
HIV infection |
| |
|
|
| Cytomegalovirus Immune globin |
MedImmune |
CMV retinitis |
| |
|
|
| Cytovene |
Syntex |
Sight threatening |
| |
|
|
| Ganciclovir |
|
CMV peripheral CMV retinitis |
| |
|
|
| Delaviridine |
Pharmacia-Upjohn |
HIV infection, AIDS, ARC |
| |
|
|
| Dextran Sulfate |
Ueno Fine Chem. |
(RT inhibitor) AIDS, ARC, HIV |
| |
|
|
| |
Ind. Ltd. (Osaka, Japan) |
positive asymptomatic |
| |
|
|
| ddC Dideoxycytidine |
Hoffman-La Roche |
HIV infection, AIDS, ARC |
| |
|
|
| ddI Dideoxyinosine |
Bristol-Myers Squibb |
HIV infection, AIDS, ARC; combination with AZT/d4T |
| |
|
|
| DMP-450 |
AVID (Camden, NJ) |
HIV infection, AIDS, ARC (protease inhibitor) |
| |
|
|
| Efavirenz (DMP 266) (-)6-Chloro-4-(S)-cyclopropylethynyl-4(S)-trifluoro-methyl-1,4-dihydro-2H-3,1-benzoxazin-2-one,
STOCRINE |
DuPont Merck |
HIV infection, AIDS, ARC (non-nucleoside RT inhibitor) |
| |
|
|
| EL10 |
Elan Corp, PLC (Gainesville, GA) |
HIV infection |
| |
|
|
| Famciclovir |
Smith Kline |
herpes zoster, herpes simplex |
| |
|
|
| FTC |
Emory University |
HIV infection, AIDS, ARC (reverse transcriptase inhibitor) |
| |
|
|
| GS 840 |
Gilead |
HIV infection, AIDS, ARC (reverse transcriptase inhibitor) |
| |
|
|
| HBY097 |
Hoechst Marion Roussel |
HIV infection, AIDS, ARC (non-nucleoside reverse transcriptase inhibitor) |
| |
|
|
| Hypericin |
VIMRx Pharm. |
HIV infection, AIDS, ARC |
| |
|
|
| Recombinant Human Interferon Beta |
Triton Biosciences (Almeda, CA) |
AIDS, Kaposi's sarcoma, ARC |
| |
|
|
| Interferon alfa-n3 |
Interferon Sciences |
ARC, AIDS |
| |
|
|
| Indinavir |
Merck |
HIV infection, AIDS, ARC, asymptomatic HIV positive, also in combination with AZT/ddI/ddC |
| |
|
|
| ISIS 2922 |
ISIS Pharmaceuticals |
CMV retinitis |
| |
|
|
| KNI-272 |
Nat'l Cancer Institute |
HIV-assoc. diseases |
| |
|
|
| Lamivudine, 3TC |
Glaxo Wellcome |
HIV infection, AIDS, ARC (reverse transcriptase inhibitor); also with AZT |
| |
|
|
| Lobucavir |
Bristol-Myers Squibb |
CMV infection |
| |
|
|
| Nelfinavir |
Agouron Pharmaceuticals |
HIV infection, AIDS, ARC (protease inhibitor) |
| |
|
|
| Nevirapine |
Boeheringer Ingleheim |
HIV infection, AIDS, ARC (RT inhibitor) |
| |
|
|
| Novapren |
Novaferon Labs, Inc. (Akron, OH) |
HIV inhibitor |
| |
|
|
| Peptide T Octapeptide |
Peninsula Labs (Belmont, CA) |
AIDS |
| |
|
|
| Sequence Trisodium Phosphonoformate |
Astra Pharm. Products, Inc. |
CMV retinitis, HIV infection, other CMV infections |
| |
|
|
| PNU-140690 |
Pharmacia Upjohn |
HIV infection, AIDS, ARC (protease inhibitor) |
| |
|
|
| Probucol |
Vyrex |
HIV infection, AIDS |
| |
|
|
| RBC-CD4 |
Sheffield Med. Tech (Houston, TX) |
HIV infection, AIDS, ARC |
| |
|
|
| Ritonavir |
Abbott |
HIV infection, AIDS, ARC (protease inhibitor) |
| |
|
|
| Saquinavir |
Hoffmann-LaRoche |
HIV infection, AIDS, ARC (protease inhibitor) |
| |
|
|
| Stavudine; d4T Didehydrodeoxy-thymidine |
Bristol-Myers Squibb |
HIV infection, AIDS, ARC |
| |
|
|
| Valaciclovir |
Glaxo Wellcome |
Genital HSV & CMV infections |
| |
|
|
| Virazole Ribavirin |
Viratek/ICN (Costa Mesa, CA) |
asymptomatic HIV positive, LAS, ARC |
| |
|
|
| VX-478 |
Vertex |
HIV infection, AIDS, ARC |
| |
|
|
| Zalcitabine |
Hoffmann-LaRoche |
HIV infection, AIDS, ARC, with AZT |
| |
|
|
| Zidovudine; AZT |
Glaxo Wellcome |
HIV infection, AIDS, ARC, Kaposi's sarcoma, in combination with other therapies |
| IMMUNOMODULATORS |
| Drug Name |
Manufacturer |
Indication |
| |
|
|
| AS-101 |
Wyeth-Ayerst |
AIDS |
| |
|
|
| Bropirimine |
Pharmacia Upjohn |
Advanced AIDS |
| |
|
|
| Acemannan |
Carrington Labs, Inc. (Irving, TX) |
AIDS, ARC |
| |
|
|
| CL246,738 |
American Cyanamid Lederle Labs |
AIDS, Kaposi's sarcoma |
| |
|
|
| EL 10 |
Elan Corp, PLC (Gainesville, GA) |
HIV infection |
| |
|
|
| FP-21399 |
Fuki ImmunoPharm |
Blocks HIV fusion with CD4+ cells |
| |
|
|
| Gamma Interferon |
Genentech |
ARC, in combination w/TNF (tumor necrosis factor) |
| |
|
|
| Granulocyte Macrophage Colony Stimulating Factor |
Genetics Institute Sandoz |
AIDS |
| |
|
|
| Granulocyte Macrophage Colony Stimulating Factor |
Hoechst-Roussel Immunex |
AIDS |
| |
|
|
| Granulocyte Macrophage Colony Stimulating Factor |
Schering-Plough |
AIDS, combination w/AZT |
| |
|
|
| HIV Core Particle Immunostimulant |
Rorer |
Seropositive HIV |
| |
|
|
| IL-2 Interleukin-2 |
Cetus |
AIDS, in combination w/AZT |
| |
|
|
| IL-2 Interleukin-2 |
Hoffman-LaRoche Immunex |
AIDS, ARC, HIV, in combination w/AZT |
| |
|
|
| IL-2 Interleukin-2 (aldeslukin) |
Chiron |
AIDS, increase in CD4 cell counts |
| |
|
|
| Immune Globulin Intravenous (human) |
Cutter Biological (Berkeley, CA) |
Pediatric AIDS, in combination w/AZT |
| |
|
|
| IMREG-1 |
Imreg (New Orleans, LA) |
AIDS, Kaposi's sarcoma, ARC, PGL |
| |
|
|
| IMREG-2 |
Imreg (New Orleans, LA) |
AIDS, Kaposi's sarcoma, ARC, PGL |
| |
|
|
| Imuthiol Diethyl Dithio Carbamate |
Merieux Institute |
AIDS, ARC |
| |
|
|
| Alpha-2 Interferon |
Schering Plough |
Kaposi's sarcoma w/AZT, AIDS |
| |
|
|
| Methionine-Enkephalin |
TNI Pharmaceutical (Chicago, IL) |
AIDS, ARC |
| |
|
|
| MTP-PE Muramyl-Tripeptide |
Ciba-Geigy Corp. |
Kaposi's sarcoma |
| |
|
|
| Granulocyte Colony Stimulating Factor |
Amgen |
AIDS, in combination w/AZT |
| |
|
|
| Remune |
Immune Response Corp. |
Immunotherapeutic |
| |
|
|
| rCD4 Recombinant Soluble Human CD4 |
Genentech |
AIDS, ARC |
| |
|
|
| rCD4-IgG hybrids |
|
AIDS, ARC |
| |
|
|
| Recombinant Soluble Human CD4 |
Biogen |
AIDS, ARC |
| |
|
|
| Interferon Alfa 2a |
Hoffman-La Roche |
Kaposi's sarcoma AIDS, ARC, in combination w/AZT |
| |
|
|
| SK&F106528 Soluble T4 |
Smith Kline |
HIV infection |
| |
|
|
| Thymopentin |
Immunobiology Research Institute (Annandale, NJ) |
HIV infection |
| |
|
|
| Tumor Necrosis Factor; TNF |
Genentech |
ARC, in combination w/gamma Interferon |
| ANTI-INFECTIVES |
| Drug Name |
Manufacturer |
Indication |
| |
|
|
| Clindamycin with Primaquine |
Pharmacia Upjohn |
PCP |
| |
|
|
| Fluconazole |
Pfizer |
Cryptococcal meningitis, candidiasis |
| |
|
|
| Pastille Nystatin Pastille |
Squibb Corp. |
Prevention of oral candidiasis |
| |
|
|
| Omidyl Eflomithine |
Merrell Dow |
PCP |
| |
|
|
| Pentamidine Isethionate (IM & IV) |
LyphoMed (Rosemont, IL) |
PCP treatment |
| |
|
|
| Trimethoprim |
|
Antibacterial |
| |
|
|
| Trimethoprim/sulfa |
|
Antibacterial |
| |
|
|
| Piritrexim |
Burroughs Wellcome |
PCP treatment |
| |
|
|
| Pentamidine Isethionate for Inhalation |
Fisons Corporation |
PCP prophylaxis |
| |
|
|
| Spiramycin |
Rhone-Poulenc diarrhea |
Cryptosporidial |
| |
|
|
| Intraconazole-R51211 |
Janssen-Pharm. |
Histoplasmosis; cryptococcal meningitis |
| |
|
|
| Trimetrexate |
Warner-Lambert |
PCP |
| |
|
|
| Daunorubicin |
NeXstar, Sequus |
Kaposi's sarcoma |
| |
|
|
| Recombinant Human Erythropoietin |
Ortho Pharm. Corp. |
Severe anemia assoc. with AZT therapy |
| |
|
|
| Recombinant Human Growth Hormone |
Serono |
AIDS-related wasting, cachexia |
| |
|
|
| Megestrol Acetate |
Bristol-Myers Squibb |
Treatment of anorexia assoc. W/AIDS |
| |
|
|
| Testosterone |
Alza, Smith Kline |
AIDS-related wasting |
| |
|
|
| Total Enteral Nutrition |
Norwich Eaton Pharmaceuticals |
Diarrhea and malabsorption related to AIDS |
[0036] Additionally, the compounds of the invention herein may be used in combination with
another class of agents for treating AIDS which are called HIV entry inhibitors. Examples
of such HIV entry inhibitors are discussed in
Drugs Of The Future 1999, 24(12), pp. 1355-1362;
Cell, Vol. 9, pp. 243-246, Oct. 29, 1999; and
Drug Discovery Today, Vol. 5, No. 5, May 2000, pp. 183-194.
[0037] It will be understood that the scope of combinations of the compounds of this invention
with AIDS antivirals, immunomodulators, anti-infectives, HIV entry inhibitors or vaccines
is not limited to the list in the above Table, but includes in principle any combination
with any pharmaceutical composition useful for the treatment of AIDS.
[0038] Preferred combinations are simultaneous or alternating treatments of with a compound
of the present invention and an inhibitor of HIV protease and/or a non-nucleoside
inhibitor of HIV reverse transcriptase. An optional fourth component in the combination
is a nucleoside inhibitor of HIV reverse transcriptase, such as AZT, 3TC, ddC or ddI.
A preferred inhibitor of HIV protease is indinavir, which is the sulfate salt of N-(2(R)-hydroxy-1-(S)-indanyl)-2(R)-phenylmethyl-4-(S)-hydroxy-5-(1-(4-(3-pyridyl-methyl)-2(S)-N'-(t-butylcarboxamido)-piperazinyl))-pentaneamide
ethanolate, and is synthesized according to
U.S. 5,413,999. Indinavir is generally administered at a dosage of 800 mg three times a day. Other
preferred protease inhibitors are nelfinavir and ritonavir. Another preferred inhibitor
of HIV protease is saquinavir which is administered in a dosage of 600 or 1200 mg
tid. Preferred non-nucleoside inhibitors of HIV reverse transcriptase include efavirenz.
The preparation of ddC, ddI and AZT are also described in
EPO 0,484,071. These combinations may have unexpected effects on limiting the spread and degree
of infection of HIV. Preferred combinations include those with the following (I) indinavir
with efavirenz, and, optionally, AZT and/or 3TC and/or ddI and/or ddC; (2) indinavir,
and any of AZT and/or ddI and/or ddC and/or 3TC, in particular, indinavir and AZT
and 3TC; (3) stavudine and 3TC and/or zidovudine; (4) zidovudine and lamivudine and
141W94 and 1592U89; (5) zidovudine and lamivudine.
[0039] In such combinations the compound of the present invention and other active agents
may be administered separately or in conjunction. In addition, the administration
of one element may be prior to, concurrent to, or subsequent to the administration
of other agent(s).
[0040] The preparative procedures and anti-HIV-1 activity of the novel heterocyclic amidopiperazine
derivatives of Formula I are summarized below.
[0041] The following abbreviations, most of which are conventional abbreviations well known
to those skilled in the art, are used throughout the description of the invention
and the examples. Some of the abbreviations used are as follows:
- h
- = hour(s)
- rt
- = room temperature
- mol
- = mole(s)
- mmol
- = millimole(s)
- g
- = gram(s)
- mg
- = milligram(s)
- mL
- = milliliter(s)
- TFA
- = Trifluoroacetic Acid
- DCE
- = 1,2-Dichloroethane
- CH2Cl2
- = Dichloromethane
- TPAP
- = tetrapropylammonium perruthenate
- THF
- = Tetrahydofuran
- DEPBT
- = 3-(Diethoxyphosphoryloxy)-1,2,3-benzotriazin-4(3H)- one
- DMAP
- = 4-dimethylaminopyridine
- P-EDC
- = Polymer supported 1-(3-dimethylaminopropyl)-3- ethylcarbodiimide
- EDC
- = 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide
- DMF
- = N,N-dimethylformamide
- Hunig's Base
- = N,N-Diisopropylethylamine
- mCPBA
- = meta-Chloroperbenzoic Acid
- azaindole
- = 1H-Pyrrolo-pyridine
- PMB
- = 4-Methoxybenzyl
- DDQ
- = 2, 3-Dichloro-5, 6-dicyano-1, 4-benzoquinone
- OTf
- = Trifluoromethanesulfonoxy
- NMM
- = 4-Methylmorpholine
- PIP-COPh
- = 1-Benzoylpiperazine
- NaHMDS
- = Sodium hexamethyldisilazide
- EDAC
- = 1-(3-Dimethylaminopropyl)-3-ethylcarbodiimide
- TMS
- = Trimethylsilyl
- DCM
- = Dichloromethane
- DCC
- = 1,3-dicyclohexyl-carbodiimide
[0042] The present invention comprises compounds of Formula I, their pharmaceutical formulations,
and their use in patients suffering from or susceptible to HIV infection. The compounds
of Formula I include pharmaceutically acceptable salts thereof. General procedures
to construct compounds of Formula I and intermediates useful for their synthesis are
described in the following Schemes.
[0043] It should be noted that in many cases reactions are depicted for only one position
of an intermediate or compound of Formula I, such as the R
6 position, for example. It is to be understood that such reactions could be used at
other positions, such as R
1-R
4 or R
7 of the various intermediates or compounds of Formula I. Reaction conditions and methods
given in the specific examples are broadly applicable to compounds with other substitution
and to other tranformations in this application.
[0044] Heterocyclic carboxylates of general formula QC(O)OR' or QC(O)L
1 (such as those of formula IIa in Scheme 1A or formula II in Scheme 1, herein) or
suitable surrogates may be purchased from commercial sources or synthesized. R' is
usually a simple alkyl, preferably methyl or alternatively ethyl. Simple C
1-C
6 alkyl esters or phenyl or substituted phenyl ethers also are suitable. L' represents
a leaving group and may represent OR' herein. The heterocyclic carboxylates of formula
IIa or II can be prepared by two basic strategies using numerous methods from the
literature or the methods within this application. The first strategy involves the
synthesis of an appropriate heterocycle containing a carboxylate ester group while
the second strategy involves the synthesis of the parent heterocycle followed by installation
of a carboxylate ester moiety onto the parent heterocycle. The following Schemes I-1
through I-17 represent various heterocyclic carboxylates which may serve as useful
intermediates for the preparation of compounds of Formula I. The methods used to prepare
compounds of Formula I from the heterocyclic carboxylates are those described for
Schemes 1, 1A and 2.
[0045] Schemes I-1 through I-12 depict methods and conditions for the synthesis of azaindole
and indole carboxylates according to the first strategy wherein an indole or azainole
containing a carboxylate moiety is synthesized. Literature references follow the depicted
Schemes.

[0046] The preparation of of azaindole and indole carboxylates may be accomplished according
to procedures which are known in the art. For example, the methods described in references
such as
Chikvaidze, I.; Megrelishvili, N.; Samsoniya, S.A.; Suvorov, N. N.; Khim Geterotsikl
Soedin 1991, 11, 1508-1511;
Murakami, Y.; Takahashi, H.; Nakazawa, Y.; Koshimizu, M.; et al.; Tetrahedron Lett.
1989, 30, 2099;
Rydon, H. N.; Siddappa, S.; J. Chem. Soc. 1951, 2462;
Justoni, R.; Pessina, R.; Farmaco, Ed. Sci. 1955, 10, 356;
Ishii, H.; Murakami, Y.; Hosoya, K.; Takeda, H.; et al.; Chem. Pharm. Bull. 1973,
21, 1481; and
Speicher, A.; Eicher, T.; Tevzadze, L. M.; Khoshtariya, T. E.; J. Prakt Chem/Chem-Ztg
1997, 339(7), 669-671 may be used to prepare either indole or azaindole (wherein one of W, X, Y, or Z is
NR
10) carboxylates as shown in Scheme I-1, above.
[0047] Another method for the synthesis of indole-2-carboxylates or azaindole-2-carboxylates
is shown below in Scheme I-2. The preparation of the indole-2-carboxylates, wherein
W, X, Y, and Z are CR
2, CR
3, CR
4, and CR
5, respectively, can be carried out according to methods as described numerous literature
references. These references incude
Martin, P.; Winkler, T.; Helv Chim Acta 1994, 77(1), 111-120;
Jones, G. B.; Moody, C. J.; J. Chem. Soc., Perkin Trans. 1 1989, 2455;
Gairns, R. S.; Grant, R. D.; Moody, C. J.; Rees, C. W.; Tsoi, S. C.; J. Chem. Soc.,
Perkin Trans. 1 1986, 483;
Mackenzie, A. R.; Moody, C. J.; Rees, C. W.; Tetrahedron 1986, 42, 3259;
Hemetsberger, H.; Knittel, D.; Weidmann, H.; Monatsh Chem 1970, 101, 161;
Kawase, M.; Sinhababu, A.K.; Borchardt, R.T.; Chem. Pharm. Bull. 1990, 38(11), 2939-2946;
Watanabe, T; Takahashi, H.; Kamakura, H.; Sakaguchi, S.; Osaki, M.; Toyama, S.; Mizuma,
Y.; Ueda, I.; Murakami, Y.; Chem. Pharm. Bull. 1991, 39(12), 3145-3152;
Molina, P.; Tarraga, A.; Ferao, A.; Gaspar, C.; Heterocycles 1993, 35(1), 427-432;
Bolton, R.E.; Moody, C.J.; Rees, C.W.; J. Chem. Soc., Perkin Trans. 1 1989, 2136;
Bolton, R.E.; Moody, C.J.; Rees, C.W.; Tojo, G. J. Chem. Soc., Perkin Trans. 1 1987,
931;
Samanta, S.S.; Ghosh, S.C.; De, A.; J. Chem. Soc., Perkin Trans. 1 1997, 24, 3673-3677;
Romero, A.G.; Leiby, J.A.; McCall, R.B.; Piercey, M.F.; Smith, M.W.; Han, F.; J. Med.
Chem. 1993, 36(15), 2066-2074; and
Boger, D.L.; Coleman, R.S.; Invergo, B.J.; J. Org. Chem. 1987, 52, 1521. Similar methodology can be extended to synthesize azaindole-2-carboxylates wherein
one of W, X, Y, and Z is NR
10 as described in
Molina, P.; Alajarin, M.; Sanchez-Andrada, P.; Synthesis 1993, 2, 225-228.

[0048] Another method for preparing indole-2-carboxylates or azaindole-2-carboxylates is
shown below in Scheme I-3 wherein the nitro group is reductively cyclized with the
alkenyl ester moiety shown to provide the indole-2-carboxylate carboxylates or azaindole-2-carboxylate
as depicted. The preparation of the indole-2-carboxylates, wherein W, X, Y, and Z
are CR
3, CR
4, CR
5, and CR
6, respectively, can be carried out according to the conditions shown and as further
described in references such as
Akazome, M.; Kondo, T.; Watanabe, Y.; J. Org. Chem. 1994, 59(12), 3375-3380;
Kametani, T.; Nyu, K.; Yamanaka, T.; Yagi, H.; Ogasawara, K.; Tetrahedron Lett. 1969,
1027;
Crotti, C.; Cenini, S.; et al.; J. Chem. Soc., Chem. Commun. 1986, 10, 784; and
Mali, R.S.; Yadav, V.J.; Synthesis 1984, 10, 862. The same methodology can be extended to synthesize azaindole-2-carboxylates wherein
one of W, X, Y, and Z is NR
10.

[0049] Another similar synthesis of either indole-2-carboxylates or azaindole-2-carboxylates
is shown below in Scheme I-4 and may be carried out according to methods descibed
in literature references such as
Yakhontov, L. N.; Azimov, V. A.; Lapan, E. I.; Tetrahedron Lett. 1969, 1909;
Scott, A. I.; Townsend, C. A.; Okada, K.; Kajiwara, M.; J. Am. Chem. Soc. 1974, 96,
8054;
Frydman, B.; Baldain, G.; Repetto, J.C.; J. Org. Chem. 1973, 38, 1824 and
Fisher, M. H.; Matzuk, A. R.; J. Heterocycl. Chem. 1969, 6, 775.

[0050] Scheme I-5, above, depicts the formation of indole-2-carboxylates where W, X, Y,
and Z are CR
3, CR
4, CR
5, and CR
6, respectively, and which may be accomplished by the base induced cyclization of an
ester intermediate according to methods such as those described in
Boes, M.; Jenck, F.; Martin, J.R.; Moreau, J.L.; Mutel, V.; Sleight, A.J.; Widmer,
U.; Eur. J. Med. Chem. 1997, 32(3), 253-261;
Robertson, A.; J. Chem. Soc. 1927, 1937. The corresponding azaindole-2-carboxylates may be prepared according to the methods
described in
Willette, R. E.; Adv. Heterocycl. Chem. 1968, 9, 27.
[0051] The preparation of indole-2-carboxylates, wherein W, X, Y, and Z are CR
3, CR
4. CR
5, and CR
6, respectively, may also be accomplished by a palladium mediated cyclization reaction
as shown below in Scheme I-6 and according to methods as described in
Koerber-Ple, K.; Massiot, G.; Synlett. 1994, 9, 759-760; and
Chen, C.; Lieberman, D.R.; Larsen, R.D.; Verhoeven, T.R.; Reider, P.J.; J. Org. Chem.
1997, 62(9), 2676-2677. The preparation of azaindole-2-carboxylates, wherein one of W, X, Y, and Z is NR
10, may be accomplished according to methods such as those described by
Morris, J.J.; Hughes, L.R.; Glen, A.T.; Taylor, P.J.; J. Med. Chem. 1991, 34(1), 447-455; and
Kutney, J.P.; Noda, M.; Lewis, N.G.; Monteiro, B.; et al.; Heterocycles 1981, 16,
1469.

[0053] Indoles or aza indoles may be prepared via the well known Bartoli reaction in which
vinyl magnesium bromide reacts with an aryl or heteroaryl nitro group, to form a five-membered
nitrogen containing ring. Some references for the above transformation include:
Bartoli et al. a) Tetrahedron Lett. 1989, 30, 2129 b)
J. Chem. Soc. Perkin Trans. 1 1991, 2757 c)
J. Chem. Soc. Perkin Trans. II 1991, 657; and d)
Synthesis (1999), 1594. Other methods for indole synthesis are described in
Pindur, U.; Adam, R.; J. Heterocyclic Chem. 1988, 25, 1; or the book by
Richard A. Sundberg The Chemistry of Indoles 1970 Academic Press London. Additional methods for the preparation of indole intermediates include the Leimgruber-Batcho
Indole synthesis (
R.D. Clark et. al. Heterocycles, 1984, 22, 195); the Fisher Indole synthesis (references:
D. Hughes; Organic Preparations and Procedures 1993, 609;
Guy, A. et.al Synthesis 1980, 222; or the 2,3-rearrangement protocol developed by Gassman (
Gassman, P.G.; Van Bergen, T. J.; Gilbert, D.P.; Cue, B.W., Jr; J. Am. Chem. Soc.
1974, 96(17), 5495-508; the annelation of pyrroles (
Muratake et.al. Heterocycles 1990, 31, 683); tin mediated cyclizations (
Fukuyama, T. et. al. J. Am. Chem. Soc. 1994, 116, 3127); and the Larock palladium mediated cyclization of 2-alkynyl anilines. A method for
the preparation of 2-substituted indoles is described in
Hamel, P.; Zajac, N.; Atkinson, J.G.; Girard, Y.; J. Org. Chem. 1994, 59(21), 6372-6377.
[0054] Indole syntheses and methdology for manipulating and preparing 3-piperazine containing
derivatives have been disclosed in two PCT patent applications (Blair, Wade S.; Deshpande,
Milind; Fang, Haiquan; Lin, Pin-fang; Spicer, Timothy P.; Wallace, Owen B.; Wang,
Hui; Wang, Tao; Zhang, Zhongxing; Yeung, Kap-sun. Preparation of antiviral indoleoxoacetyl
piperazine derivatives. PCT Int. Appl. (2000), 165 pp.
WO 0076521 A1 and Wallace, Owen B.; Wang, Tao; Yeung, Kap-Sun; Pearce, Bradley C.; Meanwell, Nicholas
A.; Qiu, Zhilei; Fang, Haiquan; Xue, Qiufen May; Yin, Zhiwei. Composition and antiviral
activity of substituted indoleoxoacetic piperazine derivatives.
PCT Int. Appl. (2002), WO 0204440 A1)These published applications describe methodology for functionalizing indoles which
is hereby incorporated as available and instructive to someone skilled in the art.
1H-Indole-4-carboxylic acid methyl ester is commercially available and more than 900
4 carboxy esters of indoles with various substitution are found in Scifinder showing
that a chemist skilled in the art would be able to prepare such derivatives with varied
substitution ind order to prepare compounds of claim 1. Similarly , 1H-Indole-5-carboxylic
acid methyl ester is commercially available and more than 1600 5-carboxy esters of
indoles with various substitution are found in Scifinder and I H-Indole-6-carboxylic
acid methyl ester is also commercially available and more than 1000 6-carboxy esters
of indoles with various substitution are found by searching the same source. 1H-Indole-7-carboxylic
acid methyl ester is commercially available and more than 400 7-carboxy esters of
indoles with various substitution are found in Scifinder. 1H-Indole-2-carboxylic acid
methyl ester is commercially available and more than 8000 2-carboxy esters of indoles
with various substitution are found in Scifinder.
[0055] As mentioned above, azaindoles may be prepared via the Bartoli reaction in which
vinyl magnesium bromide reacts with a pyridine containing a nitro group, to form the
five-membered nitrogen containing ring of the azaindole. Substituted azaindoles may
be prepared by methods described in the literature or may be available from commercial
sources. Syntheses of aza indoles include those described in the following references
(a-k below): a)
Prokopov, A. A.; Yakhontov, L. N. Khim.-Farm. Zh. 1994, 28(7), 30-51; b)
Lablache-Combier, A. Heteroaromatics. Photoinduced Electron Transfer 1988, Pt. C,
134-312; c)
Saify, Zafar Said. Pak. J. Pharmacol. 1986, 2(2), 43-6; d)
Bisagni, E. Jerusalem Symp. Quantum Chem. Biochem. 1972, 4, 439-45; e)
Yakhontov, L. N. Usp. Khim. 1968, 37(7), 1258-87; f)
Willette, R. E. Advan. Heterocycl. Chem. 1968, 9, 27-105; g)
Mahadevan, I.; Rasmussen, M. Tetrahedron 1993, 49(33), 7337-52; h)
Mahadevan, I.; Rasmussen, M. J. Heterocycl. Chem. 1992, 29(2), 359-67; i)
Spivey, A. C.; Fekner, T.; Spey, S. E.; Adams, H. J. Org. Chem. 1999, 64(26), 9430-9443; j)
Spivey, A.C.; Fekner, T.; Adams, H. Tetrahedron Lett. 1998, 39(48), 8919-8922; k)
Advances in Heterocyclic Chemistry (Academic press) 1991, Vol. 52, pg 235-236 and references therein. Palladium catalyzed methods can be utilized for the introduction
of the carboxylate moiety onto the indole or azaindole according to methods such as
those described in
Kondo, Y.; Yoshida, A.; Sakamoto, T.; J. Chem. Soc., Perkin Trans 1 1996, 19, 2331-2332; [Carbon monoxide, MeOH, PdCl
2, LiCl, CH
3C(O)ONa trihydrate, triethylamine, R
1 = (CH
3)
2NCH
2];
Tollari, S.; et al.; J. Organomet. Chem. 1997, 527(1-2), 93; [palladium catalyst, MeOH, CO gas, 4 equivalents triethylamine, R
1 = (CH
3)
2NCH
2]; or using 1) Li
2PdCl
4, CH
3C(O)ONa, ethanol; 2) methanol, CO, triethylamine and as depicted in Scheme 1-7.

[0056] Azaindole syntheses and methods for preparing 3 position piperazine containing derivatives
have been disclosed in a PCT patent application (Wang, Tao; Wallace, Owen B.; Zhang,
Zhongxing; Meanwell, Nicholas A.; Bender, John A. Preparation of antiviral azaindole
derivatives.
PCT Int. Appl. (2001), WO 0162255 A1). This published application describes methodology for functionalizing azaindoles
which is hereby incorporated as available and instructive to someone skilled in the
art.
[0061] The following references describe additional methodologies for converting indoles
to indole carboxylate esters via formation of anions and subsequent trapping with
either carbon dioxide or other ester precursors such as chloroformates or alkyl cyano
formates. One such method is described in
Sundberg, R.J.; Broome, R.; Walters, C.P.; Schnur, D.; J. Heterocycl. Chem. 1981,
18, 807 and is carried out as depicted below in Scheme I-8 for indole derivatives in which
W, X, Y, and Z are CR
3, CR
4, CR
5, and CR
6, respectively. This chemistry can also be employed to prepare azaindole -2-carboxylates,
wherein one of W, X, Y, and Z is NR
10, according to methods described in
Desarbre, E.; Coudret, S.; Meheust, C.; Merour, J.-Y.; Tetrahedron 1997, 53(10),
3637-3648.

[0062] A method for installing a carbomethoxy group using a Grignard reagent, carbon dioxide,
and diazomethane is shown below in Scheme I-9 and may be carried out according to
procedures described in
J. Organomet. Chem. 1997, 527(1-2), 93-102.

[0063] A method for the introduction of a carbomethoxy group at the 2 position of a 1-methoxyindole
or 1-methoxyazaindole is shown below in Scheme I-10. The reaction may be accomplished
by treating the 1-methoxyindole or 1-methoxyazaindole with a strong base, such as
n-butyl lithium, in an aprotic solvent, such as tetrahydrofuran, and then reacting
the anion thus generated with methyl carbonate. The conditions employed are as further
described in
Heterocycles 1991, 32(2),221-227.

[0064] The preparation of 2-carboxymethyl-3-methyl(aza)indole derivatives is depicted in
the Scheme I-11 below and may be accomplished according to the procedure as described
in
Synth. Commun. 1988,18(10), 1151-65. Other references which utilize anion formation and trapping to generate indole and
azaindole carboxylates include
Kawasaki, T.; Kodama, A.; Nishida, T.; Shimizu, K.; Somei, M.; Heterocycles 1991,
32(2), 221-227; and
Katritzky, A.R.; Akutagawa, K.; Jones, R.A.; Synth. Commun. 1988, 18(10), 1151-65.

[0065] Fukuda, T.; Maeda, R.; Iwao, M.; Tetrahedron 1999, 55(30), 9151-9162 describes methodology for protecting the indole or azaindole nitrogen with a directing
group, functionalizing the 7-position, and then subsequently removing the protecting
group from the indole or azaindole nitrogen. This method can be used to install a
carboxylate ester or acid derivative at C-7 as depicted in the Scheme I-12 below.
These C-7 derivatives provide a handle which can then be converted to almost any functional
group or can be reacted with an appropriate cyanomethyl piperazine derivative using
methods described herein for Schemes 1, 1A and 2 to provide compounds comparable to
those of formula I.

[0066] Schemes I-13, and I-14 depict the preparation of benzisoxazole or azabenzisoxazole
carboxylates which can serve as useful intermediates for the synthesis of compounds
comparable to those of Formula I using the methods described herein for Schemes 1,
1A, and 2. Scheme I-13 depicts a general method for converting 2-hydroxybenzoic acid
derivatives or the corresponding pyridine derivatives (where one of W, X, Y, and Z
is N) to the corresponding benzisoxazole carboxylate. Step e of Scheme I-13 can be
carried out by treating the acid with sulfuric acid in methanol as described in
Can. J. Chem. 1988, 66(6), 1405-1409 to provide the methyl glyoxylate derivative. Alternatively, Step e may be accomplished
by first treating the hydroxy acid derivative with thionyl chloride, then with sodium
cyanide and tetrabutylammonium bromide, and then with hydrochloric acid and water
to provide the glyoxylic acid which may then be esterified under standard conditions
to provide the glyoxylate derivative. Step f of Scheme I-13 may be accomplished by
treating the methyl glyoxylate derivative with hydroxylamine hydrochloride in an appropriate
solvent such as ethanol. The oxime derivative thus obtained may then be converted
to the corresponding (aza)benzisoxazole upon treatment with either tricloroacetylisocyanate
or thionyl chloride as shown in Step g and as further described in
Heterocycles 1987, 26(11), 2921.

[0067] Scheme I-14 shows the synthesis of methyl-7-methoxy-4-azabenzisoxazole-3-carboxylate.
Steps a-d of Scheme I-14 were accomplished as described by
Shimano, M. et al. in Tetrahedron 1998, 54, 12745-12774 at page 12750. Step a of Scheme I-14 was carried out by O-alkylation of 3-hydroxypyridine
with methoxymethyl chloride in tetrahydrofuran-dimethylformamide in the presence of
potassium
terfiary-butoxide as base. The methoxymethyl ether was then brominated as shown in Step b
by treatment with
tertiary-butyllithium and 1,2-dibromotetrafluoroethane in diethyl ether at -78 °C. The bromide
was converted to the corresponding methoxy derivative as shown in Step c by treatment
with sodium methoxide in methanol. The carboxylic acid was then prepared as shown
in Step d by treatment with
tertiary-butyllithium followed by dry ice (CO
2) in tetrahydrofuran at -78 °C and then quenching the reaction with aqueous hydrochloric
acid. Steps e, f, and g were then carried out according to the same methods described
for Steps e, f, and g of Scheme I-13.

[0068] Alternative reaction schemes which may be used to prepare benzisoxazole intermediates
useful for the preparation of compounds comparable to those of Formula I are shown
in Scheme I-14-2. The 3-hydroxypyridine may be iodinated in step a according to the
method described in
J. Med. Chem. 1974, 17, 1065. The iodo derivative may then be converted to the cyano derivative as shown in step
b according to the method described in
Heterocycles 1987, 26(11), 2921 followed by conversion to the acetyl derivative as depicted in step c according to
the method described in
Chem. Pharm. Bull. 1977, 25, 1150. The acetyl derivative may then be converted to the corresponding methyl oxalate
derivative upon treatment with selenium dioxide and pyridine followed by treatment
with diazomethane according to the method described in
Tetrahedron Lett. 1994, 35(48), 8955-6. Steps f and g of Scheme I-14-2 can then be carried out as described previously for
Scheme I-14.

[0069] Scheme I-14-3 depicts an alternative method which may be used to prepare azabenzisoxazole
derivatives such as 7-methoxy-4-azabenzisoxazole. 3-hydroxy-4-methoxypyridine is iodinated
as shown in step a according to the procedure described in
J. Med. Chem. 1974, 17, 1065. The methyl oxalate side chain may then be introduced using the palladium catalyzed
method as described in
J. Mol. Catal. 1986, 34(3), 317-319 as shown in step b. The methyl oxalate can then be reacted with hydroxyl amine and
subsequently cyclized as depicted and previously described for steps f and g in Schemes
I-14 and I-14-2.

[0070] Heterocyclic carboxylates may also be prepared from a heterocycle which contains
an exocyclic methyl group as shown in Scheme I-15. Step a of Scheme I-15 depicts the
bromination of the exocyclic methyl group which may be carried out according to the
method as described in
J. Med. Chem. 1997, 40, 2706-2725 by heating a mixture of the compound of formula QCH
3 with N-bromosuccinimide and benzoyl peroxide in a suitable solvent such as carbon
tetrachloride. The bromomethyl heterocycle of formula QCH
2Br can then be converted to the hydroxymethyl heterocycle of formula QCH
2OH by treatment with potassium superoxide as shown in Step b. The heterocyclic carboxylate
of formula QCO
2CH
3 can then be prepared from the hydroxymethyl derivative by Swern oxidation of the
hydroxymethyl derivative followed by treatment with silver nitrate in methanol and
then treatment with diazomethane in a mixture of diethylether and tetrahydrofuran
as depicted in Step c of Scheme I-15. Alternatively, the bromomethyl heterocycle can
be converted directly to the heterocyclic carboxylate as shown in Step d of Scheme
I-15 by treatment with 1.2 equivalents of pyridine N-oxide followed by treatment with
silver nitrate in methanol and then treatment with diazomethane in a mixture of diethylether
and tetrahydrofuran.

[0071] Scheme I-16 depicts the preparation of methyl (aza)benzisoxazole-3-carboxylates which
were prepared according to the methods as previously described for the corresponding
Steps a-d of Scheme I-15. The heterocyclic carboxylates prepared by the methodology
described in Schemes I-15 and I-16 may then be used to prepare compounds of Formula
I according to the methods as described herein in Schemes 1, 1A, and 2.

[0072] Scheme I-16-2 depicts the preparation of a 3-methyl-4-azabenzisoxazole derivative
which may be used as starting material for Scheme I-16. Steps a, b, and c of equation
1 may be carried out as previously described for Scheme I-14-2. The acetyl derivative
may then be treated with hydroxylamine to provide the oxime as depicted in step d
and then cyclized as depicted in step e (as described for steps f and g of Scheme
I-14, respectively) to provide the 3-methyl-4-azabenzisoxazole shown. In equation
2 of Scheme I-16-2 the 3-hydroxy-4-methoxypyridine is first acetylated (step a) then
is treated with hydroxylamine and cyclized as previously described to provide 3-methyl-7-methoxy-4-azabenzisoxazole.

[0073] Scheme I-17 depicts the preparation of methyl 4-methoxybenzofuran-3-carboxylate which
can then be used to prepare compounds of Formula I using the methods described for
Schemes 1, 1A, and 2. 1,3-Cyclohexanedione is treated with aqueous potassium hydroxide,
followed by bromopyruvic acid in methanol and then with hydrochloric acid to provide
the furan carboxylic acid derivative shown. The furan carboxylic acid derivative is
then treated with 10% palladium on carbon and 1-dodecene in refluxing decalin to provide
3-carboxy-4-hydroxybenzofuran. The 3-carboxy-4-hydroxybenzofuran may then be converted
to the corresponding methoxy methyl ester derivative by treatment with methyl iodide
and potassium carbonate in dimethylsulfoxide at approximately 60 °C. Alternatively,
the same transformation may be carried out by treatment with diazomethane in tetrahydrofuran/diethyl
ether at room temperature. The benzofuran derivative can then be used to prepare compounds
comparable to those of Formula I according to the methods described hereinafter for
Schemes 1, 1A and 2.

[0074] Scheme I-18 shows the preparation of glyoxylic acid intermediates which can serve
as useful intermediates for the preparation of compounds of Formula I. The methyl
group of methyl containing heterocycle of formula QCH
3 may be converted to the bromide with N-bromosuccinimide as shown in step b. Suitable
conditions for the bromination include those as described in
J. Med. Chem. 1997, 40, 2706-2725 and carried out by heating a mixture of QCH
3 with N-bromosuccinimide and benzoyl peroxide in carbon tetrachloride. Bromide displacement
with cyanide, as shown in step c, can be carried out by heating a mixture of the bromide
with either copper cyanide or potassium cyanide in either dimethylformamide or aqueous
ethanol to provide the nitrile. Hydrolysis of the nitrile followed by esterification,
as shown in step d, provides the methyl ester. Acidic or basic hydrolysis of the nitrile
may be employed. Esterification of the resulting acid may be carried out under standard
conditions or using a reagent such as diazomethane. Oxidation of the methyl ester
to the oxalate can then be carried out as depicted in step e. The oxidation can be
carried out in one step with selenium dioxide to provide the oxalate. Alternatively,
the methyl ester can be treated with a strong base such as lithium bistrimethylsilyl
amide in tetrahydrofuran at reduced temperature followed by camphorsulfonyl oxaziridine
to provide the corresponding α-hydroxy ester which may be oxidized with the Dess-Martin
reagent in order to obtain the oxalate. The oxalate may then be hydrolyzed under standard
conditions as depicted by step f to provide the oxalic acid derivative. The oxalic
acid derivative may then be coupled to an appropriate piperazine derivative to provide
a compound of Formula I. It is to be understood that the methyl acetate derivative
of formula QCH
2CO
2CH
3 prepared from step d may also be hydrolyzed to provide the acetic acid derivative
of formula QCH
2CO
2H which may then also be coupled to an appropriate piperazine derivative to provide
a compound of Formula I.

[0075] Scheme I-19 depicts the preparation of isothiazolobenzene or isothiazolopyridine
glyoxylic acid derivatives which may be employed to prepare compounds of formula I.
3-methyl isothiazolopyridines can be prepared as depicted in step a by using methodology
as described in
Taurins, A.; Khouw, V. T. Can. J. Chem. 1973, 51(11), 1741-1748. For example Isothiazolo[3,4-b]pyridine was synthesized from 2-aminonicotinonitrile
in three steps: by the reaction with NH
3 and H
2S to produce 2-aminothionicotinamide; oxidative cyclization with H
2O
2 to give 3-amino-isothiazolo[3,4-b]pyridine, followed by diazotization and reduction
with hypophosphorous acid. 3-Aminoisothiazolo[4,3-b]pyridine was prepared in a similar
way from 3-aminopicolinonitrile via 3-aminothiopicolinamide. Isothiazolo[5,4-b]pyridine
was synthesized from 2-chloronicotinonitrile in three steps: reduction with HCO
2H in the presence of Raney Nickel to obtain 2-chloronicotinaldehyde; transformation
of the latter into 2-thiocyanonicotinaldehyde; and cyclization with NH
3 to obtain isothiazolo[5,4-b]pyridine. 3-Methylizothiazolo[5,4-c]pyridine was prepared
by cyclization of 4-acetyl-3-thiocyanopyridine with NH
3. Alternatively, the 3-methylisothiazolopyridines may be prepared as described in
Chimichi, S.; Giomi, D.; Tedeschi, P. Synth. Commun. 1993, 23(1), 73-78 in a single step procedure by treating a cyanomercaptopyridine with methyllithium
in an appropriate solvent such as tetrahydrofuran to provide the 3-methylisothiazolopyridine
derivative. As described previously for Scheme I-18 the methyl group may be converted
to the bromide with N-bromosuccinimide as shown in step b. Bromide displacement with
cyanide, as shown in step c, followed by hydrolysis and esterification, as shown in
step d, provides the methyl ester. Oxidation of the methyl ester to the oxalate can
then be carried out as depicted in step e. The oxidation can be carried out in one
step with selenium dioxide to provide the oxalate. Alternatively, the methyl ester
can be treated with a strong base such as lithium bistrimethylsilyl amide in tetrahydrofuran
at reduced temperature followed by camphorsulfonyl oxaziridine to provide the corresponding
α-hydroxy ester which may be oxidized with the Dess-Martin reagent in order to obtain
the oxalate. The oxalate may then be hydrolyzed under standard conditions as depicted
by step f to provide the oxalic acid derivative. The oxalic acid derivative may then
be coupled to an appropriate piperazine derivative to provide a compound of Formula
I.

[0076] Scheme I-20 provides another example of the preparation of a glyoxylic acid intermediates
suitable for the preparation of a compound comparable to those of Formula I. The methods
employed are the same as previously described for the corresponding steps in Schemes
I-18 and I-19. R represents a lower alkyl group, preferably methyl or ethyl. The hydroxylation
of the ester, as shown in step d, may be carried out using lithium bistrimethylsilylamide
and 10-camphorsulfonyl oxaziridine or alternatively by treatment with bromine followed
by potassium acetate and 18-crown-6 in acetonitrile followed by column chromatography
purification on silica and finally treatment with 5% sodium carbonate, methanol at
approximately 65 °C. The α-hydroxy ester may then be oxidized as depicted in step
e with the Dess-Martin reagent or with pyridinium dichromate or chromium trioxide
pyridine complex to provide the glyoxylate which can then be hydrolyzed under standard
conditions as shown in step f to provide the glyoxylic acid derivative.

[0077] Scheme I-21 depicts an alternative preparation of glyoxylic acid derivatives useful
as intermediates for the preparation of compounds of Formula I. Step a of Scheme I-21
(eq. 1) shows the introduction of the glyoxylate sidechain (where R is methyl or ethyl)
onto the heterocycle of formula Q-H. Step a can be carried out by treating the heterocycle
with either methyl oxalyl chloride or ethyl oxalyl chloride in an appropriate solvent
such as dichloromethane or diethyl ether in the presence of a Lewis acid catalyst
such as aluminum trichloride to provide the glyoxylate, QC(O)CO
2R. The glyoxylate ester can then be hydrolyzed as depicted in steb b by treating the
glyoxylate with aqueous base, such as sodium hydroxide or potassium hydroxide, in
a suitable solvent such as ethanol or methanol, followed by acidification to provide
the glyoxylic acid derivative, QC(O)CO
2H. 37 The usual conditions employ methanolic or ethanolic sodium hydroxide followed
by acidification with aqueous hydrochloric acid of varying molarity but 1M HCI is
preferred. Lithium hydroxide or potassium hydroxide could also be employed and varying
amounts of water could be added to the alcohols. Propanols or butanols could also
be used as solvents. Elevated temperatures up to the boiling points of the solvents
may be utilized if ambient temperatures do not suffice. Alternatively, the hydrolysis
may be carried out in a non polar solvent such as CH
2Cl
2 or THF in the presence of Triton B. Temperatures of -70 °C to the boiling point of
the solvent may be employed but -10 °C is preferred. Other conditions for ester hydrolysis
are listed in:
Protective groups in organic synthesis 3rd ed. / Theodora W. Greene and Peter G.M.
Wuts. New York: Wiley, 1999 and both this reference and many of the conditions for ester hydrolysis are well
known to chemists of average skill in the art. Equation 2 of Scheme I-21 depicts the
glyoxylation at the 3-position of the heterocycle and is carried out according to
the methods described for equation 1. The glyoxylic acid derivatives may then be coupled
with appropriately substituted piperazine derivatives of formula H-TC(O)A to provide
compounds of Formula I.

[0078] Scheme 1-22 shows the preparation of glyoxylic acid chloride derivatives which are
also useful intermediates for the preparation of compounds of Formula I. The glyoxylic
acid chloride derivative of formula QC(O)C(O)CI can be prepared by treating an appropriate
heterocycle of formula Q-H with oxalyl chloride in an appropriate solvent such as
diethyl ether in the presence of an appropriate Lewis acid catalyst such as aluminum
trichloride. Equation 2 depicts the introduction of the glyoxylic acid chloride side
chain at the 3-position of the heterocycle using the method described for equation
1. The glyoxylic acid chloride derivatives can then be reacted with an appropriately
substituted piperazine derivative of formula H-TC(O)A in an appropriate solvent such
as tetrahydrofuran or acetonitrile in the presence of a suitable base such as diisopropylethylamine
or pyridine to provide compounds of formula I. Additional methodology for attaching
the -C(O)C(O)TC(O)A moiety to an appropriate heterocycle is described in
WO-0076521 published by the World Patent Office on 12/21/00.

[0079] The following heterocycles, which exemplify compounds which may serve as useful intermediates
for the preparation of compounds within the scope of Formula I or of reference compounds.
These compounds may be converted to compounds within the scope of Formula I or of
reference compounds using the methods described herein or known in the art.

[0080] Compounds with oxygenated functionality at position 4 and an aldehyde handle at position
7 of a benzofuran, such as the benzofuran derivative shown above, have been prepared
as shown by
L. Rene et. al. in Bull. Chim. Fr. 1975, (11-12 Pt.2), 2763-6. The phenolic hydroxy can be converted to a methyl ether with diazomethane or iodomethane
and KOH in DMSO. The aldehyde at position 7 can be transformed to numerous other functionalities.
The compounds may then be converted to compounds comparable to those of Formula I
by methods described herein.

[0081] 7-chloro-6-azaindole can be prepared as described in Eur. Pat. Application
EP 737685 published in 1996 by Viaud and coworkers. A preparation is also described in
S. Shiotani and H. Morita J. Heterocyclic Chem. 1982, 19, 1207. It can be converted to compounds comparable of those of Formula I using the chemistry
in Sheme 4C. The chloro group can be substituted to install alkoxy groups, heterocycles,
cyano, amido, or aryl groups using methodology described below.

[0082] The 6-azabenzisoxazole shown above can be prepared as described in
Heterocycles, 1982, 19 (8), 1511-15 by A. Comparini and coworkers. It can be converted to compounds comparable to those of this invention using the
chemistry as described in Schemes 4, 4A, and 4B. The preparation of the 6-azabenzisothiazole
shown above has also been described in the literature. The related 6-azabenzisoxazole
or 6-azabenzisothiazole derivatives which contain a chloro group in the six membered
ring can be substituted to install alkoxy groups, heterocycles, cyano, amido, or aryl
groups using methodology described below.

[0083] The three oxalic acid derivativess shown above or their corresponding acid chlorides
have been described in the literature and methods for coupling to amines has been
described by
Da Settimo, F. et. al. in Eur J. Med. Chem. 1996, 31, 951-956. Methods for preparing these compounds are referenced in this paper and thus could
be applied to more substituted benzothiophenes or benzofurans. These benzofuran or
benzothiophene derivatives may then be coupled with an appropriately substituted piperazine
derivative according to the conditions described herein for Scheme 3 to provide compounds
comparable to those of Formula I.
[0084] Indazoles may be prepared from indoles or azaindoles in a single step as described
in
Han-Cheng Zhang, J. Med. Chem. 2001, 44, 1021-1024. The resulting aldehyde may be oxidized with PCC, silver carbonate, buffered NaClO
2, CrO3 in sulfuric acid, or Jones reagent. The acid may be esterified with diazomethane
or MeOH, HCI to provide an ester. The esters can be converted to the compounds of
this invention using the alpha cyano piperazine methodology described elsewhere in
the patent. Alternatively, the acid may be decarboxylated and the indazole analogs
converted to the desired dicarbonyl derivatives as described elsewhere in this patent
application for indazoles.

[0088] 1H-Indazole-3-carboxylic acid, ethyl ester is commercially available. Similar esters
with additional substitution are described in the literature.
[0089] Scheme 1 depicts a general method suitable for the synthesis of many of the compounds
of formula I. As shown in Scheme 1, a suitable protected piperazine derivative, PG-TH,
of Formula VI, (wherein PG is an appropriate amine protecting group) is acylated with
an appropriate acylating agent, AC(O)L, (wherein L is a suitable leaving group) to
provide the protected acylated piperazine derivative of Formula V. Compound V is then
deprotected using standard methods to provide the acylated piperazine derivative of
Formula IV. For example, when PG represents tertiary-butoxycarbonyl the compound of
Formula V can be deprotected to provide a compound of Formula IV by treatment with
a strong acid, such as trifluoroacetic acid or hydrochloric acid, in an appropriate
solvent such as dichloromethane. Alternatively, when PG represents benzyl the deprotection
may be effected by hydrogenation. The acylpiperazine derivative of Formula IV is then
alkylated with 2-chloroacetonitrile in the presence of an appropriate base, such as
triethylamine, 4-methylmorpholine or diisopropylethyl amine in an appropriate solvent,
such as THF, to provide the cyanomethyl acylpiperazine derivative of Formula III.
Reaction of a heterocyclic derivative of formula II (wherein L
1 is an appropriate leaving group, such as OCH
3) with an anion of the cyanomethyl acylpiperizine of Formula III, provides cyanomethyl
amide derivative of Formula Ia. Oxidation of the cyanomethyl amide derivative of Formula
Ia to a ketoamide derivative of Formula Ib is carried out preferentially using a peracid
such as meta-chloroperoxybenzoic acid (mCPBA). The cheap and simple oxidant sodium
hypochlorite solution (common bleach) is also useful.
[0090] Other peracids could also be utilized for the oxidation of a compound of Formula
Ia to a compound of Formula Ib, including peroxy acetic acid generated
in situ. Other methods for oxidation are shown in Table A which describes a one pot condensation
/oxidation process which is usually preferred:
Table A. Oxidation Conditions
| Oxidation |
| Conditions |
| mCPBA (1 eq.) |
| |
| mCPBA (1.5 eq.) |
| |
| mCPBA (2 eq.) |
| |
Oxone
(2 eq.,with H2O) |
| |
H2O2
(2eq., 30% in H2O) |
| |
H2O2-Urea
(2eq.) |
| |
| AcOOH (2 eq., 32% in AcOH) |
| |
Clorox™
(2 eq., 5.25% NaOCl) |
[0091] Compounds of Formula II can be esters, preferably methyl esters, however other simple
alkyl esters or activated acid derivatives such as acid chlorides, acid anhydrides,
or Weinreb amides could also find utility in preparing compounds as shown.

[0093] Schemes 1 through 9 describe general reaction schemes for preparing various compounds
of Formula I. While these schemes are very general, other permutations such as carrying
a precursor or precursors to substituents R
1 through R
7 through the reaction scheme and then converting it to a compound of Formula I in
the last step are also contemplated methods of this invention. Nonlimiting examples
of such strategies follow in subsequent schemes. Scheme I A depicts a general method
suitable for the synthesis of many of the compounds of Formula I using the methodology
described for Scheme 1. As shown in Scheme 1, a piperazine derivative of formula IV
may be alkylated with chloroacetonitrile in the presence of a suitable base, such
as triethylamine, in an appropriate aprotic solvent, such as tetrahydrofuran, to provide
a cyanomethylpiperazine derivative of formula III. Other tertiary amine bases such
as 4-methylmorpholine may also be used in this step. Reaction of a suitable heterocyclic
carboxylate ester of formula II with an anion of a cyanomethyl piperazine derivative
provides cyanomethyl esters of formula Ia. The anion of the cyanomethyl piperazine
derivative can be generated by treating a solution of the cyanomethyl piperazine derivative
with an appropriate base, such as sodium hexamethyldisilazide (NaHMDS). The esters
of formula II are preferably methyl esters but other simple alkyl esters or activated
acid derivatives such as acid chlorides, acid anhydrides, or Weinreb amides could
also find utility. Oxidation of the alpha cyano ketone of Formula Ia to a ketoamide
of Formula Ib is carried out preferentially using a peracid oxidant such as meta-chloroperoxybenzoic
acid. Other peracids may be useful for the oxidation of Ia to Ib, including peroxy
acetic acid generated
in situ. A general literature reference for some of the chemistry depicted in Scheme 1 is
Takahashi, K.; Shibasaki, K.; Ogura, K.; Iida, H.; Chem Lett. 1983, 859.

[0094] Scheme 2 provides a further example of the synthesis of compounds of Formula I according
to the route previously described in Schemes 1 and 1A. The benzoylpiperazine derivative
of Formula IVa is first alkylated with 2-chloroacetonitrile in tetrahydrofuran in
the presence of triethylamine to provide the cyanomethyl derivative of Formula IIIa.
The anion of the cyanomethyl derivative is then generated by treating the intermediate
of Formula IIIa with sodium hexamethyldisilazide (NaHMDS) in an aprotic solvent such
as tetrahydrofuran. The anion thus generated is then reacted with the heterocyclic
carboxylate intermediate of Formula IIa to provide the (2-oxo-1-cyanoethyl) benzoylpiperazine
derivative of Formula Ic. The compound of Formula Ic may then be oxidized using an
appropriate oxidant, such as 3-chloroperoxybenzoic acid (mCPBA) to provide compounds
of Formula Id.
[0095] Alternatively, as shown in Scheme 3 below, compounds of formula Ib can be prepared
by reaction of a heterocyclic glyoxylic acid derivative of Formula VII (QC(O)CO
2H), with a piperazine derivative of Formula IV (HTC(O)A), under standard peptide coupling
conditions to provide compounds of Formula Ib. Standard peptide coupling refers to
coupling an amine with a carboxylic acid in the presence of an amine acid coupling
reagent such as DCC, PyBop, EDC, or DEPBT. The preparation of DEPBT is described by
Li, H.; Jiang, X.; Ye, Y.-H.; Fan, C.; Romoff, T.; and Goodman, M. in Organic Lett.,
1999, 1, 91-93.
[0096] The group T as referred to herein is

[0097] One preferred method for carrying out this reaction is to use the reagent 3-(diethoxyphosphoryloxy)-1,2,3-benzotriazin-4(3H)-one
(DEPBT) and an amine HTC(O)A in DMF as solvent containing a tertiary amine such as
diisopropylethylamine. Another preferred method is to use the reagent 1-(3-Dimethylaminopropyl)-3-ethylcarbodiimide
hydrochloride in an appropriate solvent and in the presence of diisopropylethylamine.
Typical stoichiometries are given in the specific examples but these ratios may be
modified. The amide bond construction reactions depicted in Scheme 3 could be carried
out using the specialized conditions described herein or alternatively by applying
the conditions or coupling reagents for amide bond construction described in the literature.
Some specific non-limiting examples are given in this application.

[0098] Another method for the synthesis of compounds of Formula Ib is shown in Scheme 4,
below. The hydrolysis of the heterocyclic oxoacetic acid ester intermediate of Formula
VIII, to form the heterocyclic oxoacetic acid of Formula VII, is shown in Step 1 of
Scheme 4. The usual conditions employ methanolic or ethanolic sodium hydroxide followed
by acidification with aqueous hydrochloric acid of varying molarity but 1M HCI is
preferred. Lithium hydroxide or potassium hydroxide could also be employed and varying
amounts of water could be added to the alcohols. Propanols or butanols could also
be used as solvents. Elevated temperatures up to the boiling points of the solvents
may be utilized if ambient temperatures do not suffice. Alternatively, the hydrolysis
may be carried out in a non polar solvent such as CH
2Cl
2 or THF in the presence of Triton B. Temperatures of-70 °C to the boiling point of
the solvent may be employed but -10 °C is preferred. Other conditions for ester hydrolysis
are well known to chemists of average skill in the art. It is to be understood that
these hydrolysis conditions are applicable to other regioisomeric heterocyclic oxoacetic
acid esters. The glyoxylic acid derivative of Formula VII may then be converted to
a compound of Formula Ib directly as described in Scheme 3, above. Alternatively,
as Step 2 of Scheme 4 depicts, the glyoxylic acid derivative of Formula VII can be
converted to the corresponding glyoxylic acid chloride of Formula IX. This transformation
can be carried out using thionyl chloride, reaction with oxalyl chloride, or other
methods well known in the art. Alternatively, the intermediates of Formula IX can
also be obtained as described previously for Scheme I-22. Coupling of the piperazine
derivative, H-T-C(O)A to the intermediate glyoxylic acid chloride of Formula IX, may
be carried out in a basic solvent such as pyridine or triethylamine, or in an inert
solvent in the presence of pyridine as base or other tertiary amine bases to provide
compounds of Formula Ib. Schotten-Baumann conditions could also be employed for this
coupling (aqueous base).

[0099] Scheme 4A provides a further depiction of routes used to prepare compounds of the
invention. In equation 1, an appropriate heterocycle is treated with oxalyl chloride
in the presence of a Lewis acid catalyst, such as aluminum trichloride, in an aprotic
solvent such as diethyl ether. The intermediate heterocyclic oxalyl chloride derivative
may then be coupled to the piperazine derivative of Formula HTC(O)A in the presence
of a suitable base, such as diisopropylethylamine (Hunig's base) to provide compounds
within Formula I. Alternatively, the heterocycle may be treated with ethyl oxalyl
chloride or methyl oxalyl chloride in the presence of a Lewis acid catalyst, such
as aluminum trichloride, in an appropriate aprotic solvent such as dichloromethane,
to provide the corresponding heterocyclic oxalate (step a of eq. 2). The oxalate may
then be hydrolyzed (step b of eq. 2) to provide the corresponding oxalic acid derivative
which can then be coupled to the piperazine derivative of formula HTC(O)A using the
conditions shown (step c of eq. 2) or other standard peptide coupling methods as previously
described.

[0100] Scheme 4B, below, depicts the preparation of benzofuran derivatives within the scope
of Formula I, using the methods described above for Schemes 4 and 4A. The starting
benzofuran derivatives can be prepared according to the methods described by
Hertel, L. et al. in PCT Appl. WO 0000198 (for example where R
3 is F and R
6 is CH
3).

[0101] Scheme 4C, equation 1, below, depicts the preparation of an azabenzofuran derivative
according to the methods previously described for Schemes 4, 4A and 4B. The starting
7-chloro-4-azabenzofuran was prepared as described by
Shiotani, S. et al. in J. Heterocyclic Chem. 1996, 33, 1051. The chloro group can then be converted to an aryl or heteroaryl substituent by using
methods well known in the art, such as the Suzuki coupling or Stille coupling as depicted
in equation 2. Typical conditions which may be used for the Suzuki or Stille type
couplings are described subsequently for equations 4-6 of Scheme 6.

[0102] An alternate method (three step procedure) for preparing compounds of Formula I is
shown in Scheme 5, below. Reaction of a known or synthesized heterocyclic acetic acid
derivative of Formula X with a piperazine derivative of Formula IV, under standard
peptide coupling conditions will afford the desired amides of Formula Ie. Preferred
peptide coupling conditions include the use of EDC in the presence of diisopropylethylamine.
Treatment of the amide derivative, Ie, with a strong base, such as lithium diisopropylamide
(LDA), followed by quenching with (+,-)-Davis' reagent will afford the corresponding
α-hydroxyamide derivatives of formula If. Finally, oxidation of the α-hydroxyamide
of Formula If, with an oxidant, such as Dess-Martin reagent, will provide the desired
α-ketoamides of formula Ib.
[0103] An alternative route which may be used to obtain the α-ketoamides of Formula Ib involves
the direct oxidation of the acetamide derivative of Formula Ie. A preferred method
is to treat the acetamide derivative of Formula Ie with an oxidant, such as selenium
dioxide (SeO
2) in a polar solvent such as dioxane to provide the desired α-ketoamides of formula
Ib.

[0104] It will be appreciated by one skilled in the art that certain functional groups present
on the heterocyclic moiety represented by the variable Q of a compound of Formula
I or its precursor may be converted to other groups by transformations known in the
art. Schemes 6-9 provide nonlimiting examples of transformations useful to provide
various compounds of Formula I. In Schemes 6-9 various functional group transformations
are shown for the R
6 position of the heterocyclic moiety represented by Q in the general formula (with
the point of attachment being at one of positions R
1-R
5). It is to be understood that the same functional group conversions may be applicable
to any of the R
1-R
6 positions of the heterocyclic moiety (other than the R
1-R
6 position which is the point of attachment). The transformations depicted in Schemes
6-9 are applicable to both intermediates which can then be converted to compounds
of Formula I and to compounds of Formula I.

[0105] Scheme 6, above, depicts the conversion of a bromide to various other functional
groups. In equation 1, treatment of the bromide with a strong base, such as
n-butyl lithium, in an aprotic solvent, such as THF, followed by treatment with dimethylformamide
results in the aldehyde shown.
[0106] Equation 2 of Scheme 6 depicts the conversion of the bromide to the cyano derivative.
This transformation can be achieved by treating the bromide with a reagent such as
sodium cyanide, copper cyanide or zinc cyanide in a solvent such as dimethylformamide.
[0107] Equations 3 and 4 of Scheme 6 show a suitable bromo derivative may undergo metal
mediated couplings with various stannanes or boronic acid derivatives. Conditions
for the Stille-type coupling, shown in equation 3, are well known in the art and involve
treatment of the bromide (or iodide or triflate) with an aryl, heteroaryl or vinyl
stannane in the presence of an appropriate palladium catalyst in an appropriate solvent.
Palladium catalysts used include, but are not limited to, tetrakistriphenylphosphine
palladium and palladium (II) acetate. Appropriate solvents include, but are not limited
to, polar solvents such as dioxane and 1-methyl-2-pyrrolidinone. Numerous examples
of conditions for carrying out the Stille reaction may be found in references such
as
Farina, V.; Roth G.P.; Adv. Met.-Org. Chem. 1996, 5, 1-53;
Farina, V.; Krishnamurthy, V.; Scott, W.J.; Org. React. (N.Y.) 1997, 50, 1-652; and
Stille, J.K.; Angew. Chem. Int. Ed. Engl. 1986, 25, 508-524.
[0108] Equation 4 of Scheme 6 depicts the Suzuki-type coupling of the bromide with an appropriate
boronic acid derivative. Appropriate boronic acid derivatives include aryl and heteroaryl
boronic acid derivatives. This transformation may be carried out in the presence of
an appropriate palladium catalyst, such as tetrakistriphenylphosphine palladium, and
a base, such as potassium carbonate, in a solvent or solvent mixture such as dimethylformamide
and water. Typical reaction conditions for carrying out the Suzuki-type reaction can
be found in
Miyaura, N.; Suzuki, A.; Chem. Rev. 1995, 95, 2457.
[0109] Alternative methods are available to one skilled in the art for carrying out transformations
analogous to those shown in equations 3 and 4 of Scheme 6. For example, substituted
azabenzoxazoles or other heterocyclic groups of general formula Q containing a chloride,
bromide, iodide, triflate, or phosphonate undergo coupling reactions with a boronate
(Suzuki type reactions) or a stannane to provide the corresponding substituted heterocycles.
Triflates and boronates are prepared via standard literature procedures from the corresponding
hydroxy bearing heterocycle. The substitututed heterocyles may undergo metal mediated
coupling to provide compounds of Formula I wherein R
6 is aryl, heteroaryl, or heteroalicyclic for example. The bromoheterocycle intermediates,
(or heterocyclic triflates or iodides) may undergo Stille-type coupling with heteroarylstannanes
as shown in equation 3. Conditions for this reaction are well known in the art and
the following are three example references a)
Farina, V.; Roth, G.P. Recent advances in the Stille reaction; Adv. Met.-Org. Chem.
1996, 5, 1-53. b)
Farina, V.; Krishnamurthy, V.; Scott, W.J. The Stille reaction ; Org. React. (N.
Y.) 1997, 50, 1-652. and c)
Stille, J. K. Angew. Chem. Int. Ed. Engl. 1986, 25, 508-524. Other references for general coupling conditions are also in the reference by
Richard C. Larock Comprehensive Organic Transformations 2nd Ed. 1999, John Wiley and
Sons New York. All of these references provide numerous conditions at the disposal of those skilled
in the art to carry out transformations such as those depicted in equation 3 and 4
of Scheme 6. It can be well recognized that a heterocyclic stannane could also be
coupled to a heterocyclic or aryl halide or triflate to construct compounds of Formula
I. Suzuki coupling (
Norio Miyaura and Akiro Suzuki Chem Rev. 1995, 95, 2457.) between a bromo heterocycle intermediate and a suitable boronate could also be
employed.
[0110] Suzuki couplings between chloroheterocycle intermediates, as depicted in equation
5 of Scheme 6, are also feasible. If standard conditions fail new specialized catalysts
and conditions can be employed. Some references (and the references therein) describing
catalysts which are useful for coupling with aryl and heteroaryl chlorides are :
Littke, A. F.; Dai, C.; Fu, G. C. J. Am. Chem. Soc. 2000, 122(17), 4020-4028;
Varma, R. S.; Naicker, K. P. Tetrahedron Lett. 1999, 40(3), 439-442;
Wallow, T. I.; Novak, B. M. J. Org. Chem. 1994, 59(17), 5034-7;
Buchwald, S.; Old, D. W.; Wolfe, J. P.; Palucki, M.; Kamikawa, K.; Chieffi, A.; Sadighi,
J. P.; Singer, R. A.; Ahman, J PCT Int. Appl. WO 0002887 2000; Wolfe, J. P.; Buchwald, S. L. Angew. Chem., Int. Ed. 1999, 38(23), 3415;
Wolfe, J. P.; Singer, R. A.; Yang, B. H.; Buchwald, S. L. J. Am. Chem. Soc. 1999,
121(41), 9550-9561;
Wolfe, J. P.; Buchwald, S. L. Angew. Chem., Int. Ed. 1999, 38(16), 2413-2416;
Bracher, F.; Hildebrand, D.; Liebigs Ann. Chem. 1992,12, 1315-1319; and
Bracher, F.; Hildebrand, D.; Liebigs Ann. Chem. 1993, 8, 837-839.
[0111] Alternatively, the boronate or stannane may be formed on the heterocyclic moiety
via methods known in the art and the coupling performed in the reverse manner with
aryl or heteroaryl based halogens or triflates.
[0113] Scheme 7, below, depicts various transformations of a carboxylic acid group at the
R
6 position. In equation 1, the carboxylic acid group is being converted to an amide
by using standard peptide coupling techniques. Standard peptide coupling refers to
coupling an amine with a carboxylic acid in the presence of an amine acid coupling
reagent such as DCC, PyBop, EDC, or DEPBT.

[0114] Equation 2 of Scheme 7 shows the conversion of the carboxylic acid group to an acylsulfonamide
group by treating the carboxylic acid with a primary sulfonamide, such as methylsulfonamide
or phenylsulfonamide in the presence of a peptide coupling agent, such as EDC, and
a base, such as DMAP, in an appropriate aprotic solvent, such as dichloromethane.
[0115] The carboxylic acid group can also be converted to the corresponding acid chloride
by treatment with thionyl chloride (neat or in an inert solvent) or oxalyl chloride
in an inert solvent such as benzene, toluene, THF or dichloromethane as shown in equation
3 of Scheme 7. The acid chloride may then be further reacted, for example with an
excess of ammonia, primary amine or secondary amine in an inert solvent such as benzene,
toluene, THF or dichloromethane to provide the corresponding amides. The acid chloride
may also be reacted with a stoichiometric amount of amine in the presence of a base,
such as triethylamine, 4-methylmorpholine, 2,6-lutidine or pyridine. Alternatively,
the acid chloride may be reacted with an amine under basic conditions (usually sodium
hydroxide or potassium hydroxide) in solvent mixtures containing water and possibly
a miscible cosolvent such as dioxane or THF.
[0117] Equation 5 of Scheme 7 shows the acid being used as a versatile precursor for the
formation of various heterocycles. The acid could be converted to hydrazonyl bromide
and then a pyrazole via methods described by
Shawali in J. Heterocyclic Chem. 1976, 13, 989. One method for general heterocycle synthesis would be to convert the acid to an
alpha bromo ketone by conversion to the acid chloride using standard methods, reaction
with diazomethane, and finally reaction with HBr. The alpha bromo ketone could be
used to prepare many different compounds of Formula I as it can be converted to many
heterocycles or other compounds of Formula I. Alpha amino ketones can be prepared
by displacement of the bromide with amines. Alternatively, the alpha bromo ketone
could be used to prepare heterocycles not available directly from the aldeheyde or
acid. For example, using the conditions described by
Hulton et al. in Synth. Comm. 1979, 9, 789 to react the alpha bromo ketone would provide oxazoles. Reaction of the alpha bromoketone
with urea via the methods described by
Pattanayak, B.K. et al. in Indian J. Chem. 1978, 16, 1030 would provide 2-amino oxazoles. The alpha bromoketone could also be used to generate
furans using beta keto esters as described in
Chemische Berichte 1902, 35, 1545 and
Chemische Bericte 1911, 44, 493; pyrroles (from beta dicarbonyls as in
Indian J. Chem. 1973, 11, 1260; thiazoles by Hantsch methods as described by
Roomi et al in Can. J. Chem. 1970, 48, 1689; or isoxazoles and imidazoles as described by
Sorrel, T.N. in J. Org. Chem. 1994, 59, 1589. Coupling of the aforementioned acid chloride with N-methyl-O-methyl hydroxyl amine
would provide a "Weinreb Amide" which could be used to react with alkyl lithiums or
Grignard reagents to generate ketones. Reaction of the Weinreb anion with a dianion
of a hydroxyl amine would generate isoxazoles as in
Nitz, T. J. et al. J. Org. Chem. 1994, 59, 5828-5832. Reaction with an acetylenic lithium or other carbanion would generate alkynyl indole
ketones. Reaction of this alkynyl intermediate with diazomethane or other diazo compounds
would give pyrazoles as in
Bowden, K. et al. J. Chem. Soc. 1946, 953. Reaction with azide or hydroxyl amine would give heterocycles after elimination
of water. Nitrile oxides would react with the alkynyl ketone to give isoxazoles as
described in
Chimichi, S. Synth. Comm. 1992, 22, 2909. Reaction of the initial acid to provide an acid chloride using for example oxalyl
chloride or thionyl chloride or triphenyl phosphine/ carbon tetrachloride provides
a useful intermediate as noted above. Reaction of the acid chloride with an alpha
ester substituted isocyanide and base would give 2-substituted oxazoles as described
by
Scholkopf et al. in Angew. Int. Ed. Engl. 1971, 10(5), 333. These could be converted to amines, alcohols, or halides using standard reductions
or Hoffman/Curtius type rearrangements.
[0118] Equation 1 of Scheme 8 depicts the oxidation of an heterocyclic aldehyde to the corresponding
carboxylic acid. Numerous methods are suitable for the conversion of an aldehyde to
an acid and many of these are well known in the art and described in standard organic
chemistry texts such as
Richard C. Larock in Comprehensive Organic Transformations 2nd Ed. 1999, John Wiley
and Sons, New York. One preferred method is the use of silver nitrate or silver oxide in aqueous or
anhydrous methanol at a temperature of about 25 °C or as high as reflux for 1 to 48
hours. Alternatively, the aldehyde could be oxidized to the acid using other standard
oxidants such as KMnO
4 or CrO
3/H
2SO
4.
[0119] Equation 2 of Scheme 8 depicts the reaction of the aldehyde with hydroxylamine (R=H)
or a hydroxylamine derivative (R=alkyl or substituted alkyl) in a suitable solvent,
such as ethanol to provide the oximes shown.

[0120] Equation 3 of Scheme 8 shows the conversion of the aldehyde group to an oxazole by
using TOSMIC in the presence of potassium carbonate in methanol. The aldehyde could
also be reacted with a metal reagent (RM) or Grignard reagent (RMgX, X=halide) to
generate secondary alcohols which could then be oxidized to the corresponding ketones
as shown in equation 4 of Scheme 8. Suitable Grignard reagents would include reagents
wherein R is alkyl, aryl or heteroaryl. The oxidation of the secondary alcohols to
the corresponding ketones, shown as the second step in equation 4, may be accomplished
using oxidants such as TPAP, MnO
2 or PCC.

[0121] Equation 1 of Scheme 9 depicts the hydrolysis of a nitrile group to the corresponding
carboxylic acid. Suitable conditions for carrying out this hydrolysis employ heating
the nitrile at reflux with potassium hydroxide in a mixture of water and ethanol for
1 to 100 hours to provide the acid.
[0122] Equation 2 of Scheme 9 depicts the conversion of the nitrile to a tetrazole by reacting
the nitrile with ammonium chloride and sodium azide in DMF. The tetrazole can then
be alkylated by treatment with an electrophile, such as an alkyl halide in the presence
of potassium carbonate or alternatively by treatment with a reagent such as trimethylsilyldiazomethane
in methanol/benzene.
[0123] Scheme 9, equation 3 shows the preparation of an oxadiazole from the nitrile by the
addition of hydroxylamine followed by ring closure upon treatment with phosgene. The
oxadiazole may then be methylated using trimethylsilyldiazomethane (TMSCHN
2) in a mixture of methanol and benzene.

[0124] Scheme 10 describes a method by which compounds can be prepared in which m is 0,
n is 1, p is 1, and R
8 = R
8' = hydrogen. Reaction of the keto amide compound with a suitable hydrazide such as
p-toluenesulfonyl hydrazide in glacial acetic acid provides the desired hydrazide
amide. Frequently heating, sometimes at 90° C is needed to carry out the reaction.
The hydrazide amide is then reduced with sodium borohydride in a solvent such as THF
to provide the desired methylene amide. This reaction may also need to be heated to
reflux for best results. The procedures in the sequence of example 10 for the reduction
of the carbonyl to the methylene via the p-toluensulphonhydrazone intermediate is
adapted from:
Guan, X.; Borchardt, R. T. Tetrahedron Lett., 1994, 35, 19, 3013-3016.

[0125] Scheme 11 describes a method by which compounds can be prepared in which m is 0,
n is 1, p is 1, and where one of R
8 or R
8' is hydroxy and the others are hydrogen. Reduction of the keto amide compound with
sodium borohydride (1 to 10 equivalents may be required for best yield of reaction).
An exampleof the procedure described in Example 11 above can be found in
Dillard, R. D.; Bach, N. J.; Draheim, S. E.; Berry, D. R.; Carlson, D. G.; Chirgadze,
N. Y.; Clawson, D. K.; Hartley, L. W.; Johnson, L. M.; Jones, N. D.; McKinney, E.
R.; Mihelich,.E. D.; Olkowski, J. L.; Schevitz, R. W.; Smith, A. C.; Snyder, D. W.;
Sommers, C. D.; Wery, J.-P. J. Med. Chem., 1996, 39, 5119-5136 (example 21a of the reference).
[0126] The following examples represent typical syntheses of the compounds of Formula I
as described generally above. These examples are illustrative only and are not intended
to limit the invention in any way. The reagents and starting materials are readily
available to one of ordinary skill in the art.
Typical Procedures and Characterization of Selected Example:
[0127] Unless otherwise stated, solvents and reagents were used directly as obtained from
commercial sources, and reactions were performed under a nitrogen atmosphere. Flash
chromatography was conducted on Silica gel 60 (0.040-0.063 particle size; EM Science
supply).
1H NMR spectra were recorded on Bruker DRX-500f at 500 MHz (or Bruker DPX-300B or Varian
Gemini 300 at 300 MHz as stated). The chemical shifts were reported in ppm on the
δ scale relative to δTMS = 0. The following internal references were used for the
residual protons in the following solvents: CDCl
3 (δ
H 7.26), CD
3OD (δ
H 3.30), and DMSO-
d6 (δ
H 2.50). Standard acronyms were employed to describe the multiplicity patterns: s (singlet),
d (doublet), t (triplet), q (quartet), m (multiplet), b (broad), app (apparent). The
coupling constant (
J) is in Hertz. All Liquid Chromatography (LC) data were recorded on a Shimadzu LC-10AS
liquid chromatograph using a SPD-10AV UV-Vis detector with Mass Spectrometry (MS)
data determined using a Micromass Platform for LC in electrospray mode.
| LC/MS Method (i.e., compound identification) |
| Column A: |
YMC ODS-A S7 3.0x50 mm column |
| Column B: |
PHX-LUNA C18 4.6x30 mm Column |
| Column C: |
XTERRA ms C18 4.6x30 mm column |
| Column D: |
YMC ODS-A C18 4.6x30 mm column |
| Column E: |
YMC ODS-A C18 4.6x33 mm column |
| Column F: |
YMC C18 S5 4.6x50 mm column |
| Column G: |
XTERRA C18 S7 3.0x50 mm column |
| Column H: |
YMC C18 S5 4.6x33 mm column |
| Column I: |
YMC ODS-A C18 S7 3.0x50 mm column |
| Gradient: |
100% Solvent A / 0% Solvent B to 0% Solvent A / 100% Solvent B |
[0128] Gradient time: 2 minutes
| Hold time |
1 minute |
| Flow rate: |
5 mL/min |
[0129] Detector Wavelength: 220 nm
| Solvent A: |
10% MeOH / 90% H2O / 0.1 % Trifluoroacetic Acid |
| Solvent B: |
10% H2O/90% MeOH / 0.1% Trifluoroacetic Acid |
[0130] Compounds purified by preparative HPLC were diluted in methanol (1.2 mL) and purified
using the following methods on a Shimadzu LC-10A automated preparative HPLC system.
Preparative HPLC Method (i.e., compound purification)
[0131] Purification Method: Initial gradient (40% B, 60% A) ramp to final gradient (100%
B, 0% A) over 20 minutes, hold for 3 minutes (100% B, 0% A)
| Solvent A: |
10% MeOH / 90% H2O / 0.1% Trifluoroacetic Acid |
| Solvent B: |
10% H2O / 90% MeOH / 0.1% Trifluoroacetic Acid |
| Column: |
YMC C18 S5 20x100 mm column |
| Detector Wavelength: |
220 nm |
Preparation of Intermediates
Preparation 1
[0132]

[0133] To a solution of
tert-butyl-1-piperazinecarboxylate (15.0 g. 80.5 mmol) and benzoic acid (8.94 g, 73.2
mmol) in CH
2Cl
2 (500 mL), was added DMAP (9.84 g, 80.5 mmol) and EDC (15.39 g, 80.5 mmol). The reaction
mixture was stirred at rt for 17 h, and then washed with excess hydrochloric acid
(5 x 250 mL, 1
N aq.) and water (350 mL). The organic layer was dried over MgSO
4, filtered and the filtrate concentrated
in vacuo to provide Preparation I as an off white solid (21 g, 99%).
1H NMR: (300 MHz, CD
3OD) δ 7.46 (m, 5H), 3.80 - 3.30 (b m, 8H), 1.47 (s, 9H);
LC/MS: (ES+) m/z (M+H)
+= 291, (2M+H)
+= 581, HPLC R
t= 1.430.
Preparation 2
[0134]

[0135] To Preparation 1 was charged a solution of HCI in Dioxane (80 mL, 4
M), and the mixture stirred at room temperature for 5 h. The reaction mixture was concentrated
in vacuo to afford the hydrochloride salt of Preparation 2 as a white solid (100% conversion).
1H NMR: (300 MHz, CD
3OD) δ 7.5 (m, 5H), 4.0 - 3.7 (b, 4H), 3.7 - 3.6 (b m, 4H);
LC/MS: (ES+) m/z (M+H)
+= 191, (2M+H)
+= 381, HPLC R
t = 0.210.
Preparation 3
[0136]

[0137] Prepared in the same manner as Preparations I and 2 starting from
tert-butyl-1-(2-(R)-methylpiperazine)carboxylate (15.0 g. 80.5 mmol) and benzoic acid
(8.94 g, 73.2 mmol).
1H NMR: (300 MHz, CD
3OD) δ 7.47 (m, 5H), 4.50 (app d,
J= 10.6, 1H), 3.59 (b s, 1H), 3.14 - 2.57(b m, 5H), 1.15 - 0.97 (b m, 3H);
LC/MS: (ES+) m/z (M+H)
+= 205, (2M+H)
+= 409, HPLC R
t = 0.310.
Preparations 4-5
[0138] Preparations 4 and 5 were prepared according to the following general procedure and
as further described below.
General Procedures:
[0139]

[0140] Typical procedure to prepare 1-carbonyl-4-cyanomethylpiperazine derivatives: An excess of chloroacetonitrile (7 mL) was added to a solution of piperazine derivative
of formula HTC(O)A (10.5 mmol) in THF (100 mL) and Et
3N (10 mL). The reaction was stirred for 10 hours then was quenched with saturated
aqueous NaHCO
3(100 mL). The aqueous phase was extracted with EtOAc (3 x 100 mL). The combined organic
layer was dried over MgSO
4, filtered, and the filtrate concentrated to a residue, which was used in the further
reactions without any purification.
Preparation 4
[0141]

[0142] An excess of chloroacetonitrile (7 mL) was added in to a solution of 1-benzoylpiperazine
(2 g, 10.5 mmol) in THF (100 mL) and Et
3N (10 mL). The reaction was stirred for 10 h before being quenched with saturated
aqueous NaHCO
3 (100 mL). The aqueous phase was extracted with EtOAc (3 x 100mL). The combined organic
layer was dried over MgSO
4 and concentrated to a residue, Preparation 4, which was used in the further reactions
without any purification.
Characterization of Compounds which were prepared via the same method described above:
[0143]
| Entry # |
Structure |
MS (M+H)+ Calcd. |
MS (M+H)+ Observ. And Retention Time |
| Preparation 4 |

|
230.13 |
230.02
0.84 min
(column I) |
| Preparation 5 |

|
244.14 |
244.09
0.96 min
(column I) |
| Preparation5a (same method as Prep 4 and 5) |

|
244.14 |
244.09
0.95 min
(column I) |
Preparation 5
[0144]

[0145] An excess of chloroacetonitrile (7 mL) was added in to a solution of 1-benzoyl-3-(R)-piperazine
(2 g, 10.5 mmol) in THF (100 mL) and Et
3N (10 mL). The reaction was stirred for 10 h before being quenched with saturated
aqueous NaHCO
3 (100 mL). The aqueous phase was extracted with EtOAc (3 x 100mL). The combined organic
layer was dried over MgSO
4 and concentrated to a residue, Preparation 5, which was used in the further reactions
without any purification.
Preparation 6 (Reference)
[0146]

[0147] In a sealed tube 3-carboxy-4-hydroxybenzofuran, prepared according to the method
of
Kneen, G.; Maddocks, P.J., Syn. Comm. 1986, 1635, (250 mg, 1.40 mmol), K
2CO
3 (500 mg, 3.62 mmol), acetone (10 mL) and iodomethane (6 mL) were combined and heated
to 60 °C for 3 days. The reaction was cooled, concentrated, slurried with Et
2O and filtered. The filtrate was concentrated and purified by preparative thin layer
chromagraphy (SiO
2, 9:1 hexanes/EtOAc (eluting twice)) to yield Preparation 6 (184 mg, 0.89 mmol, 64%)
as a white solid.
1H NMR: (500 MHz, CDCl
3) δ 8.14 (s, 1H), 7.92 (dd,
J = 8.2, 8.2 Hz, 1H), 7.15 (d,
J = 8.3 Hz, 1H), 6.77 (d,
J = 8.1 Hz, 1H), 3.98 (s, 3H), 3.90 (s, 3H);
13C NMR: (125 MHz,
CDCl3) δ 163.1,157.3,154.5, 150.3, 126.4, 114.7, 113.9, 105.3, 104.8, 56.1, 51.8.
MS: m/
z (M+H)
+ calcd for C
11H
10O
4: 207.06; found 207.09. HPLC retention time: 1.36 minutes (column B).
Preparation of Compounds of Formula I
EXAMPLES
Examples 1-4
[0148] Examples 1 through 4 were prepared according to the following general procedure and
as described for Example 1.
General procedure to prepare cyano-ketone derivatives:
[0149]

[0150] NaHMDS (1.75 mL, 1.0 M in THF) was added into a solution of an amido cyanomethylpiperazine
derivative of formula AC(O)TCH
2CN (0.44 mmol) and carboxylate of formula QC(O)OR (R is methyl or ethyl, 0.44 mmol)
in THF. The reaction was stirred for 10 hours at room temperature then was concentrated
in vacuo. The residue was purified using Shimadzu automated preparative HPLC System to give
the product of general formula QC(O)CH(CN)TC(O)A.
Example 1 (Reference)
[0151]

[0152] Preparation of N-(benzoyl)-N'-[2-(indol-2-yl)-2-oxo-1-cyano-ethyl]-piperazine, according
to the general procedure above, as follows: NaHMDS (1.75 mL, 1.0 M in THF) was added into a solution of 1-benzoyl-4-cyanomethylpiperazine
(100 mg, 0.44 mmol) and commercially available methyl-1H-indole-2 carboxylate (83
mg, 0.44 mmol) in THF. The reaction was stirred for 10 hours at room temperature then
was concentrated
in vacuo. The residue was purified using Shimadzu automated preparative HPLC System to give
1-(benzoyl)-4-[2-(indol-2-yl)-2-oxo-1-cyanoethyl]piperazine.
Examples 5-14 (Reference)
[0154] Examples 5-14 were prepared according to the following general procedure or as described
for examples 5 and 6.
General Procedure to Prepare Oxoacetylpiperazine derivatives:
[0155]

[0156] General procedure to prepare oxoacetyl-piperazines: NaHMDS (1.75 mL, 1.0 M in THF) was added into a solution of an appropriate cyanomethylpiperazine
derivative of formula AC(O)TCH
2CN, (0.44 mmol), and an appropriate heterocyclic carboxylate of formula QCO
2R', where R' is methyl or ethyl, (0.44 mmol) in an appropriate solvent such as THF.
After the reaction was stirred for 10 hours at room temperature, mCPBA (200 mg, >77%)
was added and the resulting mixture was stirred for another 10 hours at room temperature.
Then the reaction mixture was concentrated
in vacuo and the residue was purified using Shimadzu automated preparative HPLC System or
by column chromatography or thin layer chromatography to provide the oxoacetylpiperazine
derivative of formula QC(O)C(O)TC(O)A.
Example 5 (Reference)
[0157]

[0158] Typical procedure to prepare oxoacetyl-piperazines: Preparation of 1-(benzoyl)-4-[(indol-2-y/
)-2-oxoacetyl]piperazine: NaHMDS (1.75 mL, 1.0 M in THF) was added into a solution of 1-benzoyl-4-cyanomethylpiperazine,
Preparation 4, (100 mg, 0.44 mmol) and commercially available methyl 1H-indolyl-2-
carboxylate (83 mg, 0.44 mmol) in THF. After the reaction was stirred for 10 hours
at room temperature, mCPBA (200 mg, >77%) was added and the resulted mixture was stirred
for another 10 hours at room temperature. Then the reaction mixture was concentrated
in vacuo and the residue was purified using Shimadzu automated preparative HPLC System to
give 1-(benzoyl)-4-[(indol-2-yl)-2-oxoacetyl]piperazine (3.9 mg).
Example 6 (Reference)
[0159]

[0160] Preparation of 1-(benzoyl)-4-[(benzofuran-3-yl)-2-oxoacetyl]piperazine Sodium hexamethyldisilazide (1.0 M in THF, 1.90 ml, 1.90 mmol) was added dropwise
to a stirring solution of methyl 4-methoxybenzofuran-3-carboxylate, Preparation 6
(128 mg, 0.62 mmol) and 1-benzoyl-4-cyanomethylpiperazine, Preparation 4 (149 mg,
0.65 mmol) in THF (10 mL) and stirred 16 hours at room temperature. A solution of
m-chloroperoxybenzoic acid (∼75% pure, 290 mg, 1.25 mmol) in THF (3 mL) was then added
to the reaction mixture and stirring continued 30 min. The viscous solution was diluted
with THF (4 mL) and CH
2Cl
2 (4 mL), stirred 30 min. and then partitioned between CH
2Cl
2 (40 mL) and saturated aqueous NaHCO
3 (40 mL). The aqueous layer was further extracted with CH
2Cl
2 (2 x 30 mL) and the combined organics were washed with brine (30 mL), dried over
MgSO
4, filtered, and the filtrate was concentrated
in vacuo. The residue was purified by preparative thin layer chromatography (SiO
2, EtOAc) to provide the titled compound (24 mg, contaminated with ∼20% of an unknown
impurity, 0.050 mmol, 8%) as a yellow solid.
1H NMR: (500 MHz, CDCl
3) δ 8.34 (s, 1H), 7.55-7.36 (m, 5H), 7.35 (dd,
J= 8.2, 8.2 Hz, 1H), 7.19 (d,
J= 8.3 Hz, 1H), 6.80 (d,
J = 8.1 Hz, 1H), 3.95 (s, 3H), 4.05-3.28 (m, 8H). MS
m/
z (M+H)
+ calcd for C
22H
20N
2O
5: 393.14; found 393.13. HPLC retention time: 1.38 minutes (column B).
Examples 7-14 (Reference)
Examples 15-19 (Reference)
[0162] Examples 15-19 were prepared from the corresponding glyoxylic acid and benzoyl piperazine
according to the general procedure described below.

Example 18 (Reference)
[0164]

[0165] 1-(benzoyl)-4-[(benzothiophen-3-yl)-2-oxoacetyl]piperazine:
1H NMR (300 MHz, CDCl
3) δ 8.74 (d, 1H, J = 7.8 Hz), 8.51 (s, 1H), 7.90 (d, 1H, J = 8.1 Hz), 7.27 (m, 7H),
3.65 (m, 8H). MS m/z: (M+H)
+ calcd for C
21H
19N
2O
3S: 379.11; found 379.07. HPLC retention time: 1.64 minutes (column A).
Example 19 (Reference)
[0166]

1-(benzoyl)-4-[(benzothiophen-2-yl)-2-oxoacetyl]piperazine: 1H NMR (500 MHz, CDCl3) δ 8.00 (m, 2H), 7.76 (s, 1H), 7.68 (m, 7H), 4.0 (m, 8H).
Example 20
[0167]

[0168] Preparation of 1-(benzoyl)-4-[(indazol-3-yl)-2-oxoacetyl]-piperazine: To a solution of indazole (1.0 g) in THF (50 mL), 3.1 mL of methyl magnesium iodide
(3.0 M in diethyl ether) was added at room temperature. The resulting mixture was
stirred at room temperature for 1 hour then ZnCl
2 (1.0 M in diethyl ether) was added. The reaction mixture was then stirred 1 hour,
then an excess of oxalyl chloride (7.39 mL) was added slowly. The reaction mixture
was stirred for 8 hours at room temperature then was concentrated
in vacuo in order to remove solvent and excess oxalyl chloride and to provide a residue containing
(1H-Indazol-3-yl)-2-oxo-acetyl chloride.
[0169] The crude residue containing (1H-Indazol-3-yl)-2-oxo-acetyl chloride (50mg) was dissolved
in dry CH
3CN (7 mL), and to the resulting solution was added 3-(R)-methyl-1-benzoyl piperazine
(50 mg) and pyridine (1 mL). The reaction mixture was stirred for 1 hour at room temperature
then was concentrated in vacuo. The resulting residue was purified using Shimadzu
automated preparative HPLC System to give 1-(benzoyl)-4-[(1H-indazol-3-yl)-2-oxoacetyl]piperazine
(2.5 mg).
1H NMR (500 MHz, MeOD) δ 8.42 (m, 2H), 7.90 (m, 1H), 7.69 (m, 1H), 7.46 (m, 5H), 5.00
- 3.00 (m, 8H), 1.30 (m, 3H). MS
m/
z: (M+H)
+ calcd for C
21H
21N
4O
3: 377.16; found 377.28. HPLC retention time: 1.49 minutes (column A).
| Example Number |
Q |
R11 |
MS (M+H)+ Calcd. |
MS (M+H)+ Observ. |
HPLC Retention Time |
HPLC Column Used |
| 20 |

|
(R)-Me |
377.16 |
377.28 |
1.36 |
A |
Example 21 (Reference)
[0170]

[0171] Preparation of N-(benzoyl)-N'-[(4-fluorol-indolin-3-yl)-acetyl]-piperazine: N-(benzoyl)-N'-[(4-fluoro-indo1-3-yl)-2-oxoacetyl]-piperazine (500mg) was dissolved
in a solution of Et3SiH (1ml) in TFA (10ml). The reaction was stirred for 10 hours.
Solvents were removed under vaccum, and the residue was purified using Shimadzu automated
preparative HPLC System to give N-(benzoyl)-N'-[(4-fluorol-indolin-3-yl)-acetyl]-piperazin
(2.5mg).
| Q |
R11 |
MS (M+H)+ Calcd. |
MS (M+H)+ Observ. |
HPLC Retention Time |
HPLC Column Used |

|
H |
368.18 |
368.11 |
0.99 |
A |
Example 22 (Reference)
[0172]

[0173] Preparation of 1-(4-benzoyl-piperazin-1-yl)-2-(1H-indol-4-yl)-ethane-1,2-dione: NaHMDS
(1.3 mL of a 1.0 M in THF solution, 1.3 mmol) was added to a stirring solution of
1H-indole-4-carboxylic acid methyl ester (0.048 g, 0.27 mmol) and (4-benzoyl-piperazin-1-yl)-acetonitrile
(63 mmol, 0.27 mmol) in THF (3 mL) and the reaction mixture was stirred overnight.
mCPBA (0.01 g of 77% max., 0.43 mmol) was added to the reaction mixture, stirred 1d,
and the solution was partitioned between brine (15 mL) and EtOAc (3 x 10 mL). The
combined organic layers were dried (MgSO
4), filtered, concentrated and purified using Shimadzu automated preparative HPLC System
to give 1-(4-benzoyl-piperazin-1-yl)-2-(1H-indol-4-yl)-ethane-1,2-dione (0.028 mg,
77 mmol, 29%) as a yellow solid: MS
m/
z: (M+H)
+ calcd for C
21H
19N
2O
3: 362.14; found 362.09. HPLC retention time: 1.13 minutes (column A).
Examples 23-25 (Reference)
[0174] The following compounds were prepared by methods described for the products and intermediates
in Example 22 except that 1H-indole-7-carboxylic acid methyl ester, 1H-indole-5-carboxylic
acid methyl ester, or 1H-indole-6-carboxylic acid methyl ester were used as the starting
materials.
Characterization of intermediates or final products with the following substructure:
[0175]
| Example (Reference) |
Q |
R |
MS (M+H)+ Calcd. |
MS (M+H)+ Observ. And Retention Time |
| Example 23 |

|
Me |
376.17 |
376.25
Rf = 2.04 min.
(column A) |
| Example 24 |

|
(R)-Me |
387.18 |
387.11
Rf = 1.68 min.
(column E) |
| Example 25 |

|
(R)-Me |
387.18 |
387.12
Rf= 1.75 min.
(column E) |
Example 26 (Reference)
[0176]

[0177] To a mixture of 4-methoxy-7-cyanoindole
Z1 (603 mg, 3.50 mmol) in 1,2-dichloroethane (30 ml) at r.t. was added dropwise oxalyl
chloride (3.5 ml, 40 mmol), and the resulting mixture refluxed at 100°C for 16 h (Ref.
Taber, D. F.; Sethuraman M. R J. Org. Chem. 2000, 65, 254). The excess reagent and volatile were then evaporated
in vacuo and the residue further dried under high vacuum. To a mixture of the crude residue
in THF (20 ml) at r.t. was added benzoylpiperazine hydrochloride (965 mg, 4.26 mmol).
The mixture was stirred for about 10 min and then cooled to 0°C before adding
N,N-diisopropylethylamine (3.0 ml, 17.2 mmol). The reaction mixture was stirred at r.t.
for 3 h, evaporated
in vacuo and the residue obtained partitioned between 1
N hydrochloric acid and dichloromethane. The organic mixture was evaporated
in vacuo and the residue purified by preparative TLC (5% MeOH/CH
2Cl
2). To the purified material (80 mg) in a reusable sealed tube at r.t. was added a
solution of HCl in 1,4-dioxane (2.3 ml, 4 N), followed by ethanol (0.46 ml, 200 proof,
anhydrous). The resulting reaction mixture was cooled to -5°C and then bubbled anhydrous
HCl gas through for 50 min. The mixture was then warmed to r.t. and stirred overnight
in the tightly closed sealed tube. The mixture was transferred to a round bottom flask
and evaporated to give a crude yellowish oil. To this crude oil in ethanol (2.0 ml,
200 proof, anhydrous) was added
N,N-diisopropylethylamine (77 mg, 0.6 mmol) and acetic hydrazide (69 mg, 0.93 mmol, dried
under high vacuum before use). The reaction mixture was stirred at 60°C for 17 h and
added acetic hydrazide (69 mg, 0.93 mmol). The mixture was then further stirred at
80 to 95°C for about 30 h and 105°C for 2 days before evaporated to give a residue,
from which the product of example 26 was isolated by preparative TLC (5% MeOH/CH
2Cl
2).
1H NMR: (CDCl
3) □ 10.55 (b s, 1H), 7.80 (b s, 1H), 7.41 (b s, 5H), 7.34 (b s, 1H), 6.55 (b d, 1H),
4.00-3.30 (b m, 8H), 3.89 (s, 3H), 2.44 (s, 3H);
LC/MS: (ES+) m/z (M+H)
+ = 445; HPLC R
t = 1.047 (HPLC conditions: Start %B = 0, Final %B = 100, Gradient time = 2 min, Flow
rate = 5 ml/min, Wavelength = 220 nm, Solvent A = 10% MeOH/90%H
2O/0.1% TFA, Solvent B = 90% MeOH/10%H
2O/0.1% TFA, Column YMC ODS-A C18 S7 3.0 X 50 mm).
General procedures for preparation of Examples 27-29 (Reference)
[0178]

Representative procedures:
[0179] To a solution of indole
Z1 (650 mg, 3.78 mmol) in THF (6 ml) at r.t. was added trifluoroacetic anhydride (1.8
ml, 12.7 mmol). The reaction flask was cooled in an ice-water bath and pyridine (0.35
ml, 4.33 mmol) added to the mixture, which was then stirred at r.t. for about 30 h.
the reaction was quenched with water and the mixture extracted twice with ethyl acetate.
The combined organic extracts were evaporated
in vacuo to give a crude yellowish solid, which was titurated with MeOH and the solid filtered
to obtain the trifluoromethylketone
Z2.
[0180] A mixture of the trifluoromethylketone
Z2 (302 mg, 1.15 mmol) in DMF (4 ml) was stirred at r.t. with the reaction flask open
to air for about 10 min. The mixture was then added dropwise to a suspension ofNaH
(318 mg, 13.3 mmol) in DMF (4 ml), and the resulting mixture stirred at 60°C for 30
min. The reaction mixture was then cooled to 0°C and added excess of 1
N hydrochloric acid. The precipitates were filtered and dried to give the acid
Z3, and the filtrate extracted with ether (12 times). The combined organic extracts
were evaporated
in vacuo and the residue washed with MeOH to give another batch of acid
Z3. (Ref.
Delgado, A.; Clardy, J.; Tetrahedron Lett. 1992, 33, 2789.)
[0181] Amide
Z4 was prepared by coupling to the corresponding amine (1.5 equiv.) in DMF at r.t. using
EDC (1.8 equiv.), DMAP (2 equiv.) and NMM (4.6 equiv.) (or in CH
2Cl
2 using polymer-bound cyclohexylcarbodiimide (3 equiv., Novabiochem) and
N,N-diisopropylethylamine (5 equiv.)). The reaction mixture was stirred overnight, added
excess of 1
N hydrochloric acid and extracted with EtOAc (6 times). The combined organic extracts
were back washed with 1
N hydrochloric acid and evaporated in vacuo to give a crude residue, which was purified
by reverse phase preparative HPLC.
[0182] Other indole analogs,
e.
g. 4-fluoroindole and 7-bromoindole, were prepared analogously.
| Examples (Reference) |
Compound |
(M+H)+ |
HPLC
Rt/min |
| Example 27 |

|
389 |
1.203 |
| Example 28 |

|
403 |
1.267 |
| Example 29 |

|
352 |
1.307 |
[0183] HPLC conditions for examples 27-29: Start %B = 0, Final %B = 100, Gradient time = 2 min, Flow rate = 5 ml/min, Wavelength
= 220 nm, Solvent A = 10% MeOH/90%H
2O/0.1% TFA, Solvent B = 90% MeOH/10%H
2O/0.1% TFA, Column XTERRA C18 S7 3.0 X 50 mm.
Example 30 (Reference)
[0184] The following compound was prepared by methods described for the products and intermediates
in Example 22 except that 1H-indole-7-carboxylic acid methyl ester was used as the
starting materials.
Characterization of intermediates or final products with the following substructure:
[0185]
| Example (Reference) |
Q |
R |
MS (M+H)+ Calcd. |
MS (M+H)+ Observ. And Retention Time |
| Example 30 |

|
Me |
387.18 |
387.12
Rf = 1.65 min.
(coulmn A) |
Example 31 (Reference)
Preparation of 3-[2-(4-Benzoyl-piperazin-1-yl)-2-oxo-ethyl]-4-fluoro-1H-indole-7-carboxylic
acid methylamide
Step A
[0186] 3-[2-(4-Benzoyl-piperazin-1-yl)-1-
para-toluenesulfonhydrazono-2-oxo-ethyl]4-fluoro-1H-indole-7-carboxylic acid methylamide.

[0187] A suspension of 3-[2-(4-benzoyl-piperazin-1-yl)-2-oxo-acetyl]-4-fluoro-1H-indole-7-carboxylic
acid methylamide (
A"', 0.400 g 0.92 mmol) in 2,2,2-trifluoroethanol (5 mL) was treated with
p-toluenesulfonhydrazide (0.256 g, 1.37 mmol) and glacial acetic acid (0.5 mL), and
heated at refluxing temperature (oil bath, 90°C). The suspension became a solution
upon warming. The reaction was stirred at reflux under nitrogen atmosphere for 36
hours. Solvent was removed by rotary evaporator, and the crude residue was purified
by flash silica gel column chromatography, eluting with ethyl acetate:methanol (100:0
changing to 90:10). The combined mixture of
syn- and
anti-addition products was dried by rotary evaporation to give the title compound
(B"') as a yellow solid (0.335 g, 0.55 mmol, Y 59.8%).
1H-NMR (500 MHz, d-6 DMSO): 12.02 and 11.85 (s, 1H); 11.01 and 10.89 (s, 1H) 8.60 (br,
1H, CONH); 7.8-7.4 (m, 10H, aromatic); 7.14 (br s, 1H, C2-H); 6.93 (m, 1H, C5-H);
3.9-3.4 (2 x br, 8H, piperazine); 3.17 (s, 3H, CH
3Ph); 2.85 and 2.83 (d, 3H, CH
3). LRMS (ES+) m/z [M+H]
+ = 605.2, (ES-) m/z [M-H]
- = 603.3.
3-[2-(4-Benzoyl-piperazin-1-yl)-2-oxo-ethyl]-4-fluoro-1H-indole-7-carboxylic acid
methylamide (Example 31).
[0188]

[0189] A suspension of
B"' (0.270 g, 0.45 mmol) in anhydrous tetrahydrofuran (12 mL) under nitrogen atmosphere
was treated with sodium borohydride (1.678 g, 9.0 mmol) and the suspension was warmed
to refluxing temperature (oil bath, 90°C). At the elevated temperature the reaction
mixture was treated with a minimum amount of anhydrous methanol (dropwise addition
until dissolution occurred), and the reaction was stirred at reflux overnight. After
cooling, glacial acetic acid (3 mL) was added and the whole reaction mixture was passed
quickly through a short path silica gel column, eluting with dichloromethane followed
by 1:10 methanol:dichloromethane. The fractions containing product were dried
in vacuo and the residue was purified by flash silica gel column chromatography eluting with
dichloromethane and 1:20 methanol:dichloromethane. Product was recovered as a pale
yellow solid (0.018g, 0.043 mmol, Y. 9.6%).
1H-NMR (300 MHz, d-4 methanol): 8.4 (br, 0.4H, NH); 7.53-7.42 (m, 7H, aromatic); 7.17
(s, 1H, C2-H); 6.71 (m, 1H, C5-H); 4-3.4 (2 x br, 8H, piperazine); 3.35 (m, 2H, CH
2CO); 2.94 (d, 3H, CH
3). LRMS (ES+) m/z [M+H]
+ = 423.14, (ES-) m/z [M-H]
- = 421.2.
Example 32 (Reference)
[0191]
3-[2-(4-Benzoyl-piperazin-1-yl)-1-hydroxy-2-oxo-ethyl]-4-fluoro-1H-indole-7-carboxylic
acid methylamide (2): A suspension of 3-[2-(4-Benzoyl-piperazin-1-yl)-2-oxo-acetyl]-4-fluoro-1H-indole-7-carboxylic
acid methylamide (
A"', 0.260 g., 0.60 mmol) in absolute ethanol (5 mL) under nitrogen atmosphere was treated
with sodium borohydride (0.03 1g, 0.8 mmol). The suspension became a solution within
several minutes. The reaction was stirred overnight. Solvent was removed in-vaccuo
and the residue was purified by silica gel column chromatography, eluting with ethyl
acetate:methanol (100:0 changing to 90:10). Product fractions were pooled and dried
in-vaccuo to give the title compound (
Example 32) (Reference), 0.106 g, 0.24 mmol, Y 40%). 1H-NMR (300 MHz, d-6 DMSO): 11.33 (s, 1H
indole NH); 8.51 (d, 1H, CONH); 7.7-7.1 (m, 7H, aromatic); 6.85 (m, 1H, C5-H); 5.70
(b, 1H, OH); 5.27 (d, 1H, CHCO); 3.8-3.3 (2 x br, 8H, piperazine)2.83 (d, 3H, CH
3). LRMS (ES+) m/z [M+Na]
+ = 460.9, (ES-) [M-H]
- = 437.0.
[0192] Procedure adapted from:
Dillard, R. D.; Bach, N. J.; Draheim, S. E.; Berry, D. R; Carlson, D. G.; Chirgadze,
N. Y.; Clawson, D. K.; Hartley, L. W.; Johnson, L. M.; Jones, N. D.; McKinney, E.
R.; Mihelich,.E. D.; Olkowski, J. L.; Schevitz, R. W.; Smith, A. C.; Snyder, D. W.;
Sommers, C. D.; Wery, J.-P. J. Med Chem., 1996, 39, 5119-5136 (example 21a).
Characterization of Biological Active Compounds:
Biology
[0193] In Table 3 and hereafter, the following definitions apply.
- "µM" means micromolar;
- "ml" means milliliter;
- "µl" means microliter;
- "mg" means milligram;
[0194] The materials and experimental procedures used to obtain the results reported in
Table 3 are described below.
Cells:
[0195]
- Virus production-Human embryonic Kidney cell line, 293, propagated in Dulbecco's Modified Eagle Medium
(Life Technologies, Gaithersburg, MD) containing 10% fetal Bovine serum (FBS, Sigma,
St. Louis , MO).
- Virus infection- Human epithelial cell line, HeLa, expressing the HIV-1 receptors CD4 and CCR5 was
propagated in Dulbecco's Modified Eagle Medium (Life Technologies, Gaithersburg, MD)
containing 10% fetal Bovine serum (FBS, Sigma, St. Louis , MO) and supplemented with
0.2 mg/ml Geneticin (Life Technologies, Gaithersburg, MD) and 0.4 mg/ml Zeocin (Invitrogen,
Carlsbad, CA).
[0196] Virus-Single-round infectious reporter virus was produced by co-transfecting human embryonic
Kidney 293 cells with an HIV-1 envelope DNA expression vector and a proviral cDNA
containing an envelope deletion mutation and the luciferase reporter gene inserted
in place of HIV-1 nef sequences (Chen et al, Ref. 41). Transfections were performed
using lipofectAMINE PLUS reagent as described by the manufacturer (Life Technologies,
Gaithersburg, MD).
Experiment
[0197]
- 1. Compound was added to HeLa CD4 CCR5 cells plated in 96 well plates at a cell density
of 5 X 104 cells per well in 100 µl Dulbecco's Modified Eagle Medium containing 10 % fetal Bovine
serum at a concentration of <20 µM.
- 2. 100 µl of single-round infectious reporter virus in Dulbecco's Modified Eagle Medium
was then added to the plated cells and compound at an approximate multiplicity of
infection (MOI) of 0.01, resulting in a final volume of 200 µl per well and a final
compound concentration of <10 µM.
- 3. Samples were harvested 72 hours after infection.
- 4. Viral infection was monitored by measuring luciferase expression from viral DNA
in the infected cells using a luciferase reporter gene assay kit (Roche Molecular
Biochemicals, Indianapolis, IN). Infected cell supernatants were removed and 50 µl
of Dulbecco's Modified Eagle Medium (without phenol red) and 50 µl of luciferase assay
reagent reconstituted as described by the manufacturer (Roche Molecular Biochemicals,
Indianapolis, IN) was added per well. Luciferase activity was then quantified by measuring
luminescence using a Wallac microbeta scintillation counter.
- 5. An EC50 provides a method for comparing the antiviral potency of the compounds of this invention.
The effective concentration for fifty percent inhibition (EC50) was calculated with the Microsoft Excel Xlfit curve fitting software. For each compound,
curves were generated from percent inhibition calculated at 10 different concentrations
by using a four parameter logistic model (model 205). The EC50 data obtained is shown below in Table 3. In Table 3, compounds with an EC50 of greater than 5µM are designated as Group C; compounds with an EC50 of 1µM to 5µM are designated Group B; compounds with an EC50 of less than 1µM are designated as Group A; and compounds with a potency of greater
than 0.5µM which were not evaluated at higher doses to determine the EC50 value are designated Group D.
Table 3
| Example # |
Q |
m,n,p,R8, R8 |
T |
EC50
Range |
| 2 * |

|
m=1 , n=1,
p=0
R8 = CN,
R8' = H |

|
A |
| 3 * |

|
m=1, n=1,
p=0, R8=H,
R8'=CN |

|
A |
| 4 * |

|
m=1, n=1,
p=0,
R8=H, R8'=CN |

|
D |
| 5 * |

|
m=1, n=0,
p=1 |

|
A |
| 6 * |

|
m=1, n=0,
p=1 |

|
D |
| 7 * |

|
m=1, n=0,
p=1 |

|
A |
| 8 * |

|
m=1, n=0,
p=1 |

|
A |
| 9 * |

|
m=1, n=0,
p=1 |

|
A |
| 10 * |

|
m=1, n=0,
p=1 |

|
B |
| 11 * |

|
m=1, n=0,
p=1 |

|
C |
| 12 * |

|
m=1, n=0,
p=1 |

|
B |
| 13 * |

|
m=1, n=0,
p=1 |

|
A |
| 14 * |

|
m=1, n=0,
p=1 |

|
C |
| 15 * |

|
m=1, n=0,
p=1 |

|
A |
| 16 * |

|
m=1, n=0,
p=1 |

|
B |
| 17 * |

|
m=1, n=0,
p=1 |

|
A |
| 18 * |

|
m=1, n=0,
p=1 |

|
B |
| 19 * |

|
m=1, n=0,
p=1 |

|
B |
| 20 |

|
m=1, n=0,
p=1 |

|
A |
| 21 * |

|
m=0, n=1,
p=1
R8, R8' = H, |

|
A |
| 22 * |

|
m=1, n=0, p=1 |

|
A |
| 23 * |

|
m=1, n=0, p=1 |

|
B |
| 24 * |

|
m=1, n=1,
p=0
R8 = CN,
R8' = H |

|
On test |
| 25 * |

|
m=1, n=1,
p=0
R8 = CN,
R8' = H |

|
On test |
| 26 * |

|
m=1, n=0,
p=0 |

|
B |
| 27 * |

|
m=1, n=0,
p=0 |

|
D |
| 28 * |

|
m=1, n=0,
p=0 |

|
D |
| 29 * |

|
m=1, n=0,
p=0 |

|
A |
| 30 * |

|
m=1, n=1,
p=0
R8 = CN,
R8' = H |

|
D |
| 31 * |

|
m=1, n=1,
p=0
R8 = H,
R8' = H |

|
B |
| 32 * |

|
m=1, n=1,
p=0
R8 = OH,
R8' = H |

|
A |
[0198] The compounds of the present invention may be administered orally, parenterally (including
subcutaneous injections, intravenous, intramuscular, intrasternal injection or infusion
techniques), by inhalation spray, or rectally, in dosage unit formulations containing
conventional non-toxic pharmaceutically acceptable carriers, adjuvants and diluents.
[0199] Thus, in accordance with the present invention, there is further provided a pharmaceutical
composition for treating viral infections such as HIV infection and AIDS. The treatment
involves administering to a patient in need of such treatment a pharmaceutical composition
comprising a pharmaceutical carrier and a therapeutically effective amount of a compound
of the present invention.
[0200] The pharmaceutical composition may be in the form of orally administrable suspensions
or tablets; nasal sprays, sterile injectable preparations, for example, as sterile
injectable aqueous or oleagenous suspensions or suppositories.
[0201] When administered orally as a suspension, these compositions are prepared according
to techniques well known in the art of pharmaceutical formulation and may contain
microcrystalline cellulose for imparting bulk, alginic acid or sodium alginate as
a suspending agent, methylcellulose as a viscosity enhancer, and sweetners/flavoring
agents known in the art. As immediate release tablets, these compositions may contain
microcrystalline cellulose, dicalcium phosphate, starch, magnesium stearate and lactose
and/or other excipients, binders, extenders, disintegrants, diluents, and lubricants
known in the art.
[0202] The injectable solutions or suspensions may be formulated according to known art,
using suitable non-toxic, parenterally acceptable diluents or solvents, such as mannitol,
1,3-butanediol, water, Ringer's solution or isotonic sodium chloride solution, or
suitable dispersing or wetting and suspending agents, such as sterile, bland, fixed
oils, including synthetic mono- or diglycerides, and fatty acids, including oleic
acid.
[0203] The compounds of this invention can be administered orally to humans in a dosage
range of 1 to 100 mg/kg body weight in divided doses. One preferred dosage range is
1 to 10 mg/kg body weight orally in divided doses. Another preferred dosage range
is 1 to 20 mg/kg body weight in divided doses. It will be understood, however, that
the specific dose level and frequency of dosage for any particular patient may be
varied and will depend upon a variety of factors including the activity of the specific
compound employed, the metabolic stability and length of action of that compound,
the age, body weight, general health, sex, diet, mode and time of administration,
rate of excretion, drug combination, the severity of the particular condition, and
the host undergoing therapy.