[0001] The present invention relates to a novel superoxide dismutase (hereinafter referred
to as "SOD") and a process for the preparation thereof.
[0002] SOD is an enzyme disproportionating two superoxide radicals into a hydrogen peroxide
and a molecular oxygen, and it is known that SOD is widely present in animals, plants
and microorganisms. The superoxide radical is an important agent of toxity of oxygen
generated in an organism, and it is understood that SOD protects an organism from
the superoxide radical. Various physiological actions of the superoxide radical have
been recently elucidated, and the role of SOD as the organism defending enzyme has
attracted attention. For example, it has been found that SOD effectively protects
against oxidation easily oxidizable substances such as foodstuffs (Japanese Unexamined
Patent Publication No. 50-40785), as a cosmetic component for protecting the skin
and hair, controlling pigmentation on the skin, exerting an anti-inflammatory action
to the skin and preventing putrefaction of components of a cosmetic composition (Japanese
Unexamined Patent Publications No. 51-63949 and No. 55-87712) and for the remedy of
rheumatoid arthritis (M. Walravents & J. Dequeker,
Current Therapeutic Res.,
20 62-69, 1976).
[0003] SOD is a metal-containing enzyme and is divided into three types, copper (Cu)-zinc
(Zn)-SOD, manganese (Mn)-SOD, and iron (Fe)-SOD, according to the kind of metal contained
therein. It is known that Cu, Zn-SOD is present in the cytoplasm of eucaryotes, Mn-SOD
is present in the mitochondria of eucaryotes, algae and prokaryotic cells, and Fe-SOD
is present in algaes and prokaryotic cells. However, the SOD of the present invention
has not been known.
[0004] The present invention provides, therefore, a novel superoxide dismutase having the
following properties:
(a) action: the superoxide dismutase disproportionates two superoxide radicals to
a hydrogen peroxide and a molecular oxygen;
(b) substrate specificity: the superoxide dismutase acts on a superoxide radical;
(c) optimum pH: the optimum pH is about 8;
(d) stable pH: the superoxide dismutase is stable at pH of 4.5 to 8.0 (when the superoxide
dismutase is treated at 25°C for 60 minutes, the residual activity is at least 80%);
(e) thermal stability: when the residual activity is measured after the heat treatment
for 10 minutes at pH7.8, the superoxide dismutase is stable at treatment temperatures
of up to about 50°C and the residual activity is 90% at a treatment temperature of
60°C and 50% at a treatment temperature of 70°C;
(f) molecular weight: the molecular weight is about 8.8 x 10⁴, as determined according
to the gel filtration method;
(g) absorption spectrum at ultraviolet and visible regions: the maximum absorbance
appears at about 280 nm, the minimum absorbance appears at about 250 nm, and a shoulder
appears at about 290 nm;
(h) molecular extinction coefficient: the molecular extinction coefficient at 280
nm is about 1.45 x 10⁵ M⁻¹cm⁻¹;
(i) inhibition: the activity is not inhibited by the addition of 1 mM potassium cyanide
and exponential deactivation is caused with the lapse of time by the addition of 5
mM hydrogen peroxide; and
(j) metal analysis: the superoxide dismutase contains 1.56 g-atoms of iron per mole
of the enzyme but does not contain copper and manganese.
[0005] The present invention also provides a process for the preparation of the above-mentioned
superoxide dismutase, which comprises culturing a superoxide dismutase-producing strain
belonging to the genus
Norcardopsis in a culture medium to form and accumulate the superoxide dismutase in the culture
medium, and recovering the s oxide dismutase from the culture medium.
Figure 1 is a graph showing the pH stability of the SOD of the present invention;
Figure 2 is a graph showing the thermal stability of the SOD of the present invention;
Figure 3 shows the absorption spectrum in ultraviolet and visible region of the SOD
of the present invention; and
Figure 4 shows the inactivation profile of the SOD of the present invention by the
hydrogen peroxide treatment.
[0006] The foregoing object is attained by a novel SOD having the properties described in
detail hereinafter, and a process for production thereof by using strains belonging
to the genus
Norcardiopsis.
[0007] With a view to obtaining a valuable SOD producing organism, the present inventors
searched for microorganisms having a high SOD-producting property broadly in the natural
source, and as a result, the present inventors found that strains belonging to the
genus
Norcardiopsis, which was isolated from the soil of Yakushima, Kagoshima Prefecture, Japan, produces
a novel SOD in a large quantity.
[0008] The properties of the SOD obtained according to the present invention will now be
described.
(a) Action
[0009] The enzyme disproportionates two superoxide radicals into a hydrogen peroxide and
a molecular oxygen.
(b) Substrate Specificity
[0010] The enzyme acts on a superoxide radical.
(c) Optimum pH
[0011] The optimum pH of the enzyme is about 8.
(d) Stable pH Range
[0012] At a pH of 4.5 to 8.0, the residual activity is higher than 80% when the enzyme is
treated at 25°C for 60 minutes (see Fig. 1).
(e) Thermal Stability
[0013] When the enzyme is heat-treated at a pH of 7.8 for 10 minutes, the enzyme is stable
at temperatures of up to about 50°C, and the residual activity is 90% at 60°C and
50% at 70°C (see Fig. 2).
(f) Molecular Weight
[0014] The molecular weight is about 88,000 as determined by the gel filtration method by
high performance liquid chromatography using Shimpak DIOL 150 (supplied by Shimazu
Seisakusho) equilibrated with a 0.01 M phosphate buffer containing 0.2 M sodium chloride
at a pH of 7.0. Furthermore, a molecular weight of about 22,000 is obtained by treating
the enzyme with 1% sodium lauryl sulfate (hereinafter referred to as SDS) and carrying
out the polyacrylamide gel electrophoresis in the presence of SDS (
The Journal of Biological Chemistry,
244, 5074-5080, 1969). From these results, it is confirmed that the enzyme of the present
invention is a tetramer of sub-units having a molecular weight of about 22,000.
(g) Absorption Spectrum in Ultraviolet and Visible Region
[0015] As shown in Fig. 3, a maximum absorbance appears in the vicinity of 280 nm, a minimum
absorbance appears in the vicinity of 250 nm, and a shoulder appears in the vicinity
of 290 nm.
(h) Molecular Extinction Coefficient
[0016] The molecular extinction coefficient of the enzyme at 280 nm is about 1.45 x 10⁵
M⁻¹cm⁻¹.
(i) Inhibition of Activity by Potassium Cyanide
[0017] According to the cytochrome C method described hereinafter, the activity is not inhibited
by adding 1 mM potassium cyanide to the reaction mixture.
(j) Inactivation by Hydrogen Peroxide
[0018] When hydrogen peroxide is added to a solution of the enzyme so that the hydrogen
peroxide concentration is 5 mM and the activity is measured by the cytochrome C method
described hereinafter, the enzyme is exponentially inactivated with the lapse of time
(Fig. 4).
(k) Metal Analysis
[0019] According to the atomic extinction analysis method, it is confirmed that the enzyme
contains 1.56 g-atoms of iron per mole of enzyme and does not contain copper and manganese.
[0020] The methods for measuring the activity of the SOD of the presen
t invention will now be described.
(1) Cytochrome C Method
[0021] The measurement is carried out according to the method disclosed in
The Journal of Biological Chemistry,
244, 6049-6055, 1969. More specifically, a reaction mixture (0.4 ml) is prepared so that
the final concentrations are 50 mM phosphate buffer (pH 7.8), 0.1 mM sodium ethylenediamine
tetraacetate, 10 µm ferricytochrome C and 50 µm xanthine, and an enzyme solution (50
µl) diluted within the measurable range with phosphate buffer is added so that the
total volume is 0.5 ml. At 25°C, the initial rate (v) of increase of the absorbance
at 550 nm due to a reduction of cytochrome C is measured by a spectrophotometer. Furthermore,
the initial rate (V) of increase of the above absorbance observed when a phosphate
buffer (pH 7.8) is added instead of the enzyme solution is measured. The amount of
the enzyme inhibiting by 50% the initial rate of increase of the absorbance due to
reduction of cytochrome C under the above-mentioned reaction conditions is defined
as 1 unit (u), and the activity of the enzyme can be determined from the formula (V/v
- 1). Note, in this cytochrome C method, when a crude product such as a supernatant
of a culture medium is used, vigorous interference is caused by impurities and the
activity cannot be correctly measured. Accordingly, during the purification process,
especially during the initial purification process, the activity is measured according
to the following method.
(2) Nitro Blue Tetrazolium (NBT) Method
[0022] The measurement is carried out according to a modification of the method disclosed
in
Biochemical and Biophysical Research Communications,
46, 839-854, 1972. Namely, a reaction mixture (0.4 ml) is prepared so that the final
concentrations are 0.1 M phosphate buffer (pH 7.5), 6 µm phenazine mesosulfate and
0.1 mM nitro blue tetrazolium, an enzyme solution (50 µl) diluted within the measurable
range with a phosphate buffer (pH 7.0) is added, and a solution (50 µl) of 1.6 mM
nicotinamide adeninedinucleotide (reduced form) is further added so that the total
volume is 0.5 ml. The initial rate of increase of the absorbance at 560 nm due to
the reduction of nitro blue tetrazolium was measured by a spectrophotometer. As a
control, the initial rate of increase of the above absorbance observed when a phosphate
buffer (pH 7.0) is added instead of the enzyme liquid is measured. The activity of
the enzyme is calculated in the same manner as described above with respect to the
cytochrome C method.
[0023] The protein is determined according to the Lowry method (
The Journal of Biological Chemistry,
193, 265-275, 1951).
[0024] The taxonomical properties of the SAM-0081 strain as a typical representative of
the strains producing the above-mentioned novel SOD will now be described.
1. Morphology
[0025] Aerial hyphae has a diameter of 0.4 to 0.7 µm. The form of the aerial hyphae is simple
and not verticillate. Spore chains are found on the top end of aerial mycelium. Form
of spore chains is spiral. Each chain ordinarily contains at least 10 spores. Fragmentation
of substrate mycelium is not observed. Sporangia or flagellated spores are not observed.
Under an electron microscope, the spore surface is seen warty. The spore has a cylindrical
to short cyclidrical shape and has a length of 0.9 to 1.7 µm and a width of 0.6 to
1.1 µm.
2. Growth on Various Media
[0026] The properties on various culture media are shown in Table 1. Incidentally, the observation
was carried out after culturing had been conducted at 30°C for 7 days.

3. Physiological Properties
[0027]
1) Growth temperature range (7 days' culturing in CYC liquid medium)
growth-possible temperature: 16 - 51°C
optimum growth temperature: 24 - 37°C
2) Liquefaction of gelatin
positive
3) Hydrolysis of starch
positive
4) Coagulation of skim milk
negative
5) Peptonization of skim milk
positive
6) Formation of Melanoid pigments
positive in Peptone-yeast extract iron agar medium, and positive in Tyrosine agar
medium
7) Reduction of nitrate
negative
4. Utilization of Carbon Sources (7 days' culturing at 28°C in Pridham-Gottlieb agar
medium)
[0028] L-arabinose: ++
D-xylose: +
D-glucose: ++
D-fractose: ++
sucrose: ++
inositol: ++
L-rhamnose: ++
raffinose: ++
D-mannitol: ++
D-galactose: ++
salicin: -
Note
++: strongly positive utilization,
+: positive utilization,
-: utilization negative
5. Cell Wall Analysis
[0029] According to the method of J.L. Staneck and G.D. Roberts,
Applied Microbiology,
28, 226-231, 1974, an isomer of 2,6-diaminopymellic acid is examined, and it is found
that the isomer is of the mesotype. According to the above-mentioned method, the whole
cells are hydrolyzed and analyzed by thin layer chromatography. Ribose and glucose
are apparently detected and a trace of galactose is detected.
[0030] From the above-mentioned analysis, it is seen that strain SAM-0081 has Type III cell
wall and whole-cell sugar protein C.
6. Quinone System
[0031] When the quinone system is analyzed according to the method of Yuzo Yamade and Susumu
Kuraishi (
Experiments for Chemotaxonomy of Microorganisms, 143-155, 1982, edited by Kazuo Komagata and published by Gakkai Shuppan Center),
it is found that the strain SAM 0081 contains menaquinone MK-9 (H₈) as the major component
and MK-9 (H₆ , H₄ , H₁₀) as the minor component.
[0032] When the taxonomic position of SAM-0081 is determined based on the above-mentioned
taxonomical properties, referring H.A. Lechevalier and M.P. Lechevalier,
Introduction to the Order Actinomycetales, "The Prokaryots A Handbook of Habitats, Isolation, and Identification of Bacteria",
1915-1922, 1981, edited by M.P. Starr et al and published by Springer-Verlag, Berlin,
it is found that the present strain is very similar to actinomycetes belonging to
the genus
Nocardiopsis in that the cell wall is of type III, madurose is not detected in the whole cell
hydrolysate and long spore chains are formed on the top ends of aerial mycelia. However,
although microorganisms belonging to the genus
Nocardiopsis are defined to have menaquinone MK-10 (H₄) or MK-10 (H₆) as the major component of
the quinone system, the major component of the quinone system of the present strain
is menaquinone MK-9 (H₈). Moreover, a species having spiral spore chain on the top
ends of aerial mycelia, which belongs to the genus
Nocardiopsis, is not known, and it may not be denied that the present strain will be assigned
to a new genus. However, at the present, it is deemed most reasonable to identify
the present strain as a species belonging to the genus
Nocardiopsis. Accordingly, the present inventors identified the strain SAM-0081 as a species of
the genus
Nocardiopsis, which is mainly characterized in that spiral spore chains of at least 10 spores
are formed on the top end of aerial mycelium, fragmentation of substrate mycelia is
ordinarily not observed, and the major component of the quinone system is menaquinone
MK-9 (H₈) and the minor component is MK-9 (H₆ , H₄ , H₁₀). This strain is designated
"SAM-0081".
[0033] The strain SAM-0081 was deposited at Fermentation Research Institute (FRI), Agency
of Industrial Science and Technology, Ministry of International Trade and Industry
(1-3, Higashi 1-chome, Yatabe-machi, Tsukubagun, Ibaraki-ken, 305, JAPAN) with deposition
number FERM P-8426 on August 24, 1985, and trans
ferred to the international deposition under Budapest Treaty on August 12, 1986, as
FERM BP-1151.
[0034] The process for preparing SOD by using the above-mentioned strains (hereinafter referred
to as "present strains") will now be described.
[0035] The preparation of SOD is accomplished by culturing the present strain in a culture
medium, recovering the intended product produced in the medium, and purifying it.
[0036] A liquid or solid culture medium containing nutrient sources can be used for culturing
the present strain. However, when culturing is conducted on a large scale, a liquid
medium is preferred.
[0037] Nutrients that can be utilized by the present strain, that is, carbon sources, nitrogen
sources, inorganic salts and trace nutrient elements, are incorporated into the culture
medium. Starch, glucose and sucrose can be used as the carbon source, and nitrogen-containing
substances such as corn steep liquor, yeast extract, yeast cells, casein, peptones
and ammonium sulfate can be used as the nitrogen source. As the inorganic salt, there
can be mentioned sodium chloride, potassium phosphate, magnesium sulfate, manganese
chloride, iron sulphate, and calcium chloride. As the trace nutrient elements, there
can be mentioned vitamins such as vitamin B₁ and vitamin B₂ . Adecanol (registered
trademark of the product of Asahi Denka Kogyo Kabushiki Kaisha) may be used as a defoamer.
[0038] Culturing is carried out by stationary culturing, shaking culturing, or aeration-agitation
culturing, but when culturing is conducted on an industrial scale, submerged aeration-agitation
culturing is advantageous. Culturing conditions differ according to the composition
of the culture medium and the culturing method. Generally, the culturing temperature
is 20 to 40°C, the culturing time is 1 to 5 days, and the pH of the medium is 4 to
9, more preferably 6 to 8.
[0039] The SOD of the present invention produced by the present strains is mainly secreted
outside the cells. The enzyme is separated and purified by a customary purifying means.
More specifically, after culturing, cells and other solid matters contained in the
culture medium are removed from the cultured broth by centrifugation or filtration.
The resulting supernatant or filtrate is subjected to purification by appropriately
combining known separating and purifying means such as salting-out using ammonium
sulfate, precipitation using an organic solvent such as acetone, isoelectric precipitation,
membrane treatment such as dialysis or electric dialysis, adsorption using calcium
phosphate or alumina, ion exchange chromatography using diethyl aminoethyl (hereinafter
referred to as "DEAE") cellulose, and gel filtration using Sephadex (supplied by Pharmacia)
or Ultrogel (supplied by LKB), whereby an enzyme having a purification level meeting
the intended object can be obtained.
[0040] The present invention provides a novel SOD. Preparation of the SOD by strains belonging
to the genus
Nocardiopsis has not previously been known. The present invention further provides a novel process
for the preparation of SOD. According to this process, SOD is mainly accumulated outside
cells. Therefore, the SOD can be recovered and purified very easily.
[0041] The present invention will now be described in detail with reference to the following
examples.
Example 1
[0042] 10 ml each of a liquid culture medium (adjusted to pH 7.0) containing 3 g/l glucose,
10 g/l corn starch, 2 g/l yeast extract, 10 g/l polypeptone (Takeda Chemical), 3g/l
dry yeast cell and 1 g/l of dipotassium phosphate were distributed into 200 test tubes
having a diameter of 25 mm, steam sterilization was carried out at 120°C for 15 minutes,
and the culture medium was inoculated with the present strain. Shaking culturing (300
rpm) was carried out at 28°C for 91 hours). After termination of the culturing, cells
were removed by centrifugation to obtain 1500 ml of a supernatant. The SOD activity
of the supernatant was 83 µ/ml as determined according
to the NBT method.
[0043] Ammonium sulfate was added to the supernatant at a concentration corresponding to
80% of the saturation concentration, and the formed precipitate was collected by centrifugation.
The precipitate was dissolved in a small amount of 20 mM phosphate buffer (pH 7.0)
and dialyzed in the same buffer. The internal liquid of the dialysis was charged onto
a column (2.4 cm x 15 cm) of DEAE cellulose (DE-23 supplied by Wattman) equilibrated
with the same buffer, and the column was washed with 500 ml of the same buffer and
eluted with the same buffer at a linear concentration gradient of 0 to 1 M sodium
chloride, and 136 ml of fractions having an enzyme activity were collected. The fractions
were combined, and ammonium sulfate was added to the combined fraction again at a
concentration corresponding to 80% of the saturation concentration, and the formed
precipitate was collected by centrifugation and dissolved in a small amount of water
and dialyzed in water. The internal liquid of the dialysis was lyophilized to obtain
172 mg of a powdery product. The specific activity of the powdery product was 256
µ/mg protein as determined according to the NBT method (3950 µ/mg protein as determined
according to the cytochrome C method). The product was dissolved in a phosphate buffer
(pH 7.0) containing 0.2 M sodium chloride and the solution was charged onto a column
(1.1 cm x 140 cm) of Ultrogel ACA-44 (supplied by LKB) equilibrated with the same
buffer, and the column was eluted with the same buffer to obtain 118 ml of fractions
having an enzyme activity. The fraction were combined, and the combined fraction was
dialyzed and lyophilized to obtain 56 mg of a powdery product. The specific activity
of the product was 2700 µ/mg as determined according to the cytochrome C method.
Example 2
[0044] 200 ml each of the same liquid medium as used in Example 1 was distributed into five
500 ml Meyer flasks, and the liquid medium was sterilized and inoculated with the
present strain. Culturing was conducted at 28°C for 71 hours in a rotary shaker at
300 rpm to form an inoculum. Separately, 30 ℓ of the same culture medium was charged
in a 50 ℓ fermenter, sterilized, and inoculated with the above-mentioned inoculum.
Aeration-agitation culturing was conducted at temperature of 30°C and an aeration
rate of 0.5 vvm for 30 hours. After the termination of culturing, cells were removed
by centrifu gation to obtain 27 ℓ of a supernatant. The SOD activity of the supernatant
was 60 µ/ml as determined according to the NBT method. In the same manner as in Example
1, ammonium sulfate was added to the supernatant at a concentration corresponding
to 90% of the saturation concentration, and the formed precipitate was recovered by
centrifugation. The precipitate was dialyzed in water and the internal liquid of the
dialysis was charged onto a column (15 cm x 170 cm) of a DEAE type polymer resin (FP-DA13
supplied by Mitsubishi Kasei Kogyo) equilibrated with a 20 mM phosphate buffer (pH
7.0), and the column was washed with 7 ℓ of the same buffer and eluted with a 20 mM
phosphate buffer (pH 7.0) containing 0.3 M sodium chloride to obtain 5 ℓ of fractions
having an enzyme activity. The fractions were combined, and the combined fraction
was concentrated to 370 ml by ultrafiltration using a PELLICON CASSET SYSTEM (supplied
by Millipore; having a pore size of 10⁴, 60 cm² x 4), and ammonium sulfate was added
at a concentration corresponding to 90% of the saturation concentration. The formed
precipitate was collected by centrifugation, and a 10 mM phosphate buffer (pH 7.0)
was added to the precipitate to form 100 ml of a solution. 20 ml of the solution was
charged onto a column (3.1 cm x 135 cm) of Ultrogel ACA44 equilibriated with the same
buffer containing 0.2 M sodium chloride and eluted with the same buffer. The same
procedure was repeated to obtain 400 ml as a whole of a fraction having an enzyme
activity. The fraction was dialyzed and lyo philized to obtain 1.2 g of
SOD preparation. The specific activity of the product was 2400 µ/mg as determined
according to the cytochrome C method. The obtained SOD product had the above-mentioned
physical properties and enzymological properties and this product was different from
known SOD and thus was novel.
1. A novel superoxide dismutase having the following properties:
(a) action: the superoxide dismutase disproportionates two superoxide radicals to
a hydrogen peroxide and a molecular oxygen;
(b) substrate specificity: the superoxide dismutase acts on a superoxide radical;
(c) optimum pH: the optimum pH is about 8;
(d) stable pH: the superoxide dismutase is stable at pH of 4.5 to 8.0 (when the superoxide
dismutase is treated at 25°C for 60 minutes, the residual activity is at least 80%);
(e) thermal stability: when the residual activity is measured after the heat treatment
for 10 minutes at a pH of 7.8, the superoxide dismutase is stable at treatment temperature
of up to about 50°C, and the residual activity is 90% at a treatment temperature of
60°C, and 50% at a treatment temperature of 70°C;
(f) molecular weight: the molecular weight is about 8.8 x 10⁴, as determined according
to the gel filtration method;
(g) absorption spectrum of ultraviolet and visible region: the maximum absorbance
appears at about 280 nm, the minimum absorbance appears at about 250 nm, and a shoulder
appears at about 290 nm;
(h) molecular extinction coefficient: the molecular extinction coefficient at 280
nm is about 1.45 x 10⁵ M⁻¹cm⁻¹;
(i) inhibition: the activity is not inhibited by the addition of 1 mM potassium cyanide
and exponential inactivation is caused with the lapse of time by an addition of 5
mM hydrogen peroxide; and
(j) metal analysis: the superoxide dismutase contains 1.56 g-atoms of iron per mole
of oxygen but does not contain copper and manganese.
2. A process for the preparation of a superoxide dismutase of claim 1, which comprises
culturing a superoxide dismutase-producing strain belonging to the genus Norcardopsis in a culture medium to form and accumulate the superoxide dismutase in the culture
medium, and recovering the superoxide dismutase from the cultured medium.
3. A process according to claim 2, wherein the strain belonging to the genus Nocardopsis is Nacardopsis sp. SAM-0081 (FERM BP-1151).
4. A process according to claim 2, or claim 3 wherein the culturing is carried out
in a liquid medium.
5. A process according to claim 2,claim 3 or claim 4 wherein the cultured product
is separated to a supernatant or filtrate and a precipitate, and the superoxide dismutase
is recovered from the supernatant or filtrate.
6. A process according to claim 5, wherein the superoxide dismutase is recovered from
the supernatant or filtrate by a process comprising salting-out, gel filtration and
ultrafiltration.