RECOMBINANT DNA-DERIVED CHOLERA TOXIN SUBUNIT ANALOGS

Description

BACKGROUND OF THE INVENTION

Field Of The Invention

[0001] The present invention relates to the recombinant expression of analog subunits of cholera exotoxin, and to vaccines based on such analogs. More particularly, genetically engineered modifications of the exotoxin provide analogs of cholera toxin having the capability to elicit a protective response with reduced or essentially no catalytic activity which can contribute to the reactogenicity of cholera vaccines.

Description Of The Art

[0002] The term "cholera" refers to the disease caused by infection with the etiologic agent Vibrio cholerae, most commonly occurring in geographical areas where poor hygienic conditions prevail. Cholera remains a major cause of morbidity and mortality in many parts of the world(1,2). Experience has shown that contraction of the disease usually confers long-lasting protection against subsequent exposure to the etiologic agent (3). Consequently, considerable effort has been devoted to the development of a vaccine that would be similarly protective. A parenteral whole cell cholera vaccine has been produced, but some no longer regard it as useful, particularly for young children who are at greatest risk from the disease (1).

[0003] As for many other infectious diseases, a biological exotoxin (in this case, "cholera toxin" or "CTX") encoded by the genome of the infectious agent and secreted by it, contributes significantly to the ability of the microorganism to colonize the infected host(4). Moreover, exposure to the toxin causes severe diarrhea and vomiting which result in dehydration, a life-threatening condition of the disease(3,5). These experiences suggest that a vaccine which elicits an immunologic response (e.g., antibodies) sufficient to neutralize the toxin would thus significantly help to prevent or reduce bacterial colonization and attendant symptoms such as diarrhea and vomiting. Thus, substantial effort has been applied toward developing a vaccine containing a non-toxic analog of the toxin, i.e., a "toxoid"(1,3-13). It is known that cholera toxin is a multi-subunit macromolecule consisting of a subunit termed "A", containing a catalytic region called "A1" which ADP-ribosylates G-proteins in target cells, and a "B" oligomer which binds the holotoxin to the target cells(6). Non-toxic analogs of cholera toxin have been produced for purposes of vaccine development by various means. These methods include chemical treatment of the holotoxin or toxin subunits, deletion of the A subunit and use of the remaining B oligomer, and synthesis or isolation of peptide fragments of toxin subunits(1,3-13).

[0004] In recent years, efforts have turned toward the development of oral vaccines, with two approaches apparently having received the most attention. One of these approaches is based on the use of killed V. cholerae (i.e., chemically- or heat-inactivated), alone, or supplemented with the B oligomer of cholera toxin (1,11,12). This approach has been found to produce incomplete protection, particularly in young children(12). The other approach involves the use of living, but attenuated, strains of V. cholerae which fail to produce the A1 subunit of the toxin(13). Vaccines of this kind have provided greater levels of protection, but until recently have also been associated with unacceptable intestinal side-effects. A recently-developed vaccine based on V. cholerae strain CVD 103-HgR, in which the gene encoding the A subunit is omitted, appears to be better tolerated, at least in adults (13). However, to our knowledge, this vaccine has not been tested in children or in large-scale clinical trials.

[0005] Recent studies on the nature of cholera toxin have provided insights concerning its structure that may have application in vaccine development based on a recombinant approach. It is known that naturally-ocurring subunit A is synthesized in V. cholerae as a preprotein(14), which is subsequently cleaved to proteolytically remove a signal peptide sequence of approximately 2,160 Da. Further post-translational processing yields an amino-terminal polypeptide of approximately 21,817 Da (subunit A1) and a carboxyl-terminal polypeptide of approximately 5,398 Da (subunit A2), which are linked by a disulfide bridge(6,15,16); reduction of the disulfide bond is believed necessary for catalysis of the ADP-ribosyltransferase reaction (6,15,16). Likewise, the B subunit is synthesized as a preprotein which is subsequently cleaved by protease to remove a signal peptide. The genes, or cistronic elements, for the A1, A2 and B subunits of cholera toxin have all been fully sequenced and described in the literature (16).

BRIEF DESCRIPTION OF THE FIGURES

[0006] FIGURE 1A is the DNA sequence of the cistronic element encoding the A subunit of CTX from the prior art. The single-letter amino acid sequence beneath the DNA sequence indicates the proposed open reading frame for the A polypeptide. Subregions are also indicated, showing the start of the signal peptide (pre-A), A1, two proposed sites for carboxyl-terminal processing of A1, and the proposed start and termination of A2. It should be noted that the literature provides inconclusive evidence as to the exact location of the carboxyl terminus of A1(16,17).

[0007] FIGURE 1B is the DNA sequence of the cistronic element encoding the B subunit of CTX. Initiation and termination codons and proposed cleavage sites are likewise shown. Interestingly, the region of DNA in the operon encoding the termination of A2 and the initiation of B overlap; these two proteins, however, are in different reading frames.

[0008] FIGURE 2 shows schematic structures for the preprotein and processed protein forms of the A and B subunits of native CTX and the forms of the recombinant subunits. The "squiggle" at the amino termini of the preprotein species represents the signal peptide which is removed by V. cholerae. "M" indicates an amino terminal methionine residue; "(M)" indicates that this is a heterologous (non-native) residue residing at the amino terminus of the mature recombinant CTXA and CTXA1 subunits, and analogs thereof; amino acid sequence data indicates that the heterologous methionine residue is not substantially cleaved from the recombinant polypeptide by cellular methionine amino-peptidase. "S" indicates the sulfur moiety involved in a disulfide linkage between cysteine residues. Other selected amino acids are indicated by their standard single-letter codes, with their position within the polypeptides indicated. Selected restriction enzyme cleavage sites for the encoding DNA sequences are indicated on the encoded polypeptide with their standard three-letter codes. Native ("n") CTXA is believed to be synthesized in V. cholerae as a preprotein ("pre-A"), containing an amino-terminal signal sequence. Post-translational processing results in cleavage of the signal to yield mature CTXA. Perhaps simultaneously, a small portion of the carboxyl terminus is also cleaved proteolytically. The larger A fragment (CTXA1) and the smaller carboxyl-terminal A fragment (CTXA2) are held together after cleavage by a disulfide bridge between the single cysteine residue in each fragment. The literature possesses conflicting reports as to the location of the terminus of CTXA1 (either Arg¹⁹² or Ser¹⁹⁴); CTXA2 is believed to begin with Met¹⁹⁵. Native ("n") CTXB is also synthesized with an amino-terminal signal sequence that is subsequently processed by protease. Interestingly, the region of the CTXB cistronic element encoding its amino terminus overlaps with the CTXA cistronic element encoding its carboxyl terminus; the coding sequences, however, are in different reading frames(16). Recombinant ("r") CTXA was synthesized in E. coli under control of an optimized expression vector. An oligonucleotide linker (NdeI-XbaI) was used for cloning of the left-hand end of the DNA element, substituting an initiating methionine codon for the signal peptide-encoded sequence. The A2 region was not removed from A1 in the recombinant E. coli. A similar left-hand cloning strategy was used for CTXB, except an NdeI-AccI fragment was used to substitute the methionine initiation codon for its signal peptide-encoded sequence. Recombinant CTXA1 was synthesized to mimic native, reduced CTXA1. In this regard, an oligonucleotide linker at the right-hand end was used to substitute a termination codon for the A2 sequence such that A1 terminates at Ser¹⁹⁴, one of the two proposed cleavage sites in native CTXA1. Termination at Arg¹⁹² can also be easily accomplished using the same linker strategy. As previously noted, the amino terminal methionines of the recombinant CTXA and CTXA1 molecules, and their analogs, are not believed to be substantially removed by nascent E. coli methionine aminopeptidase.

[0009] FIGURE 3 is the SDS-PAGE of native and recombinant CTX subunits. Recombinant CTXA, CTXA1, the Arg⁷→Lys analogs of recombinant CTXA and CTXA1, and recombinant CTXB were synthesized in E. coli and inclusion bodies prepared as described in the text. The inclusion body preparations, as well as purified commercial-grade native CTX, CTXA, and CTXB, were solubilized and subjected to SDS-PAGE under reducing conditions. Lane 1, native CTX; lane 2, rCTXA/A7; lane 3, rCTXA Arg⁷→Lys analog (rCTXA/L7); lane 4, rCTXAl/A7; lane 5, rCTXA1 Arg⁷→Lys analog (rCTXA1/L7); lane 6, rCTXB; lane 7, native CTXB; lane 8, native CTXA (only CTXA1 is visualized). Subsequent to electrophoresis, the gel was stained with Coomassie Brilliant Blue R250 and then destained to reveal the stain-retaining polypeptides.

[0010] FIGURE 4 is the SDS-PAGE and autoradiographic analysis of rCTXA1 and CTXA1 analog ADP-ribosyltransferase activity. In Panel A, native CTXA, recombinant CTXA1, and various site-specific analogs or preparations of rCTXA1 were subjected to SDS-PAGE and stained with Coomassie Blue. These same preparations were used as enzyme sources to ADP-ribosylate membrane-associated G protein using [³²P]NAD under assay conditions described in the text. After the reactions were quenched, the entire reaction mixture from each preparation was subjected to SDS-PAGE, and the gel dried and subjected to autoradiography to visualize proteins that have been covalently modified by addition of [32P]-labeled ADP-ribose. Panel B shows the result of the assays when no G-protein substrate was added, illustrating the ability of recombinant CTXA1 to autoribosylate; interestingly, analog CTXA1/L7 has lost this reactivity. Panel C shows the ADP-ribosylation of substrate G protein found in human erythrocyte membranes. Addition of this substrate substantially shifts reactivity of the enzyme from itself (autoribosylation) to the target G protein (seen in the autoradiogram as its ribosylated α-subunit). Again, rCTXA1 analog L7 lacks this reactivity.

[0011] FIGURE 5 is the SDS-PAGE and autoradiographic analysis of rCTXA and rCTXA analog ADP-ribosyltransferase activities, similar to that shown for rCTXA1 in Figure 4. Because the rCTXA preparation possesses significantly lower activity than rCTXAl (see Figure 6), presumably because the former still contains the uncleaved A2 "tail" at its carboxyl terminus, these autoradiograms were attained by a longer exposure of the gel (Panel A) to the x-ray film. Panel A is the stained SDS-polyacrylamide gel of the rCTXA proteins; in comparison with Figure 4, Panel A, it is evident that the recombinant expression of these proteins is generally less than that of the companion rCTXA1 proteins. The recombinant CTXA preparation was capable of autoribosylation (Panel B) and of ADP-ribosylating the G protein substrate in human erythrocyte membranes (Panel C); these activities are substantially diminished in comparison with rCTXAl. Nevertheless, the CTXA preparations exhibit the same general pattern of inactivation as do their CTXA1 counterparts. Again, the L7 analog (Arg7→Lys) is devoid of ADP-ribosylating activity.

[0012] FIGURE 6 is the SDS-PAGE and autoradiographic comparison of the ADP-ribosyltransferase activity of rCTXA and rCTXA/L7 with that of rCTXA1 and rCTXA1/L7. Panel A is the reactivity without added substrate and Panel B is with human erythrocyte membranes added as substrate. The lanes contain: lane 1) blank (no sample added to reaction); lane 2) native CTXA without urea treatment; lane 3) native CTXA with urea treatment; lane 4) rCTXA; lane 5) rCTXA/L7; lane 6) rCTXA/L7 plus native CTXA; lane 7) rCTXA1; lane 8) rCTXA1/L7; lane 9) rCTXA1/L7 plus native CTXA. This experiment demonstrates that the rCTXA preparation is much less active than rCTXAl for ADP-ribosylation of G proteins (compare lanes 4 and 7), yet exhibits substantial autoribosylating activity. Confirming the data shown in Figures 4 and 5, substitution of lysine for arginine-7 in rCTXA and rCTXAl abolishes their ribosylating activities, both for autocatalysis and for G protein. Retention of activity by native CTXA when added to the analog preparations (lanes 6 and 9) additionally illustrates that it is not a contaminant of the recombinant preparations that suppress this activity.

[0013] FIGURE 7 illustrates the ADP-ribosylation of H27 fibroblast and erythrocyte membranes by CTXA and CTXA1 analogs. Naturally-occurring CTXA or recombinant CTXA1 analogs were incubated with [³²P]NAD and either human erythrocyte or H27 fibroblast membranes. After incubation, the mixtures were precipitated, centrifuged, and the resulting pellets subjected to SDS-PAGE. The gels were stained with Coomassie Blue, dried, and subsequently exposed to x-ray film to produce autoradiograms. B, no CTXA or CTXA1 analog added; A, naturally-occurring CTXA, A+u, naturally-occurring CTXA treated with urea; rA1, recombinant CTXA1 with no residue substitutions; RBC, human erythrocyte membranes.

[0014] FIGURE 8 illustrates the ADP-ribosylation of H27 fibroblast and membranes by CTXA and CTXA1 analogs. Naturally-occurring CTXA or recombinant CTXA1 analogs were incubated with [³²P]NAD in the presence of either human erythrocyte membranes, H27 fibroblast membranes, or no added substrate-containing membranes. After incubation, the mixtures were precipitated, centrifuged, and the resulting pellets were subjected to SDS-PAGE. The gels were stained with Coomassie blue, washed and dried. The upper left panel is a photograph of a stained gel of samples incubated in the absence of substrate-containing membranes; the upper right panel is an autoradiogram of this gel. The lower left and right panels are autoradiograms of gels of samples incubated with erythrocyte and H27 membranes, respectively. B, no CTXA or CTXA1 analog added; A, naturally-occurring CTXA; A + u, naturally-occurring CTXA treated with urea; rAl, recombinant CTXA1 with no residue substitutions; RBC, human erythrocyte membranes.

SUMMARY OF THE INVENTTON

[0015] The present invention provides a recombinant DNA molecule, at least a portion of which encodes an analog of the region A or the subregion A1 of cholera toxin said analog comprising a site-specific mutation in one or more of the sites of said region or subregion selected from among arginine-7, arginine-11, aspartic acid-9, histidine-44, histidine-70, and glutamic acid-112, or a truncation of the carboxyl terminal portion beginning at tryptophan-179, wherein said analog has reduced or no catalytic activity associated with cholera toxin reactogenicity as determined by assay of ADP-ribosyltransferase activity having reduced enzymatic activity, such activity generally accepted to be associated with vaccine reactogenicity. More specifically, site specific mutagenesis, as described herein, results in analogs of the A and A1 subunits which, compared to the native toxin counterparts, exhibit a significant reduction in catalytic function as measured by ADP-ribosyltransferase activity.

[0016] The term "catalytic subunit of cholera toxin" used in this disclosure refers to both the A region of cholera toxin and the A1 subregion, as depicted in Figs. 1A and 2. These regions of the cholera toxin macromolecule are known to possess ADP-ribosyltransferase catalytic activity(6). This enzyme is a complex of two sub-activities: an NAD glycohydrolase activity which cleaves NAD into nicotinamide and ADP-ribose, and a transferase activity which transfers the ADP-ribose to the G protein substrate. Measurements of the ADP-ribosyltransferase activity in this disclosure represent a summation of both activities. The present invention comprehends mutagenesized versions of these A and A1 polypeptides, and analogs or derivatives of such polypeptides, which in their native forms are sources of catalytic activity within the cholera toxin multimer.

[0017] The genetically-engineered analogs of cholera toxin, which are a product of this invention, provide recombinant DNA-derived materials suitable for use in vaccines for the prevention of cholera disease. The A and A1 subunit analogs can be used alone or in combination with B oligomer in a toxoid-based vaccine, or phenotypically expressed by variants of V. cholerae, or phenotypically expressed under the genetic control of other immunizing vectors. It should be noted that the analog A and A1 subunits of this invention are utilizable by themselves as antigenic agents in a vaccine because they may contain important protective epitopes. However, the use of these analogs in association with B subunits may be more desirable. The B oligomer contains neutralizing epitopes useful for eliciting immunoprotection(1,3,5). Association of the A subunit with the B oligomer may lead to a more effective immunogenic response against the B oligomer. The B oligomer can be purified from V. cholerae or, alternatively, can be derived recombinantly in a manner similar to the A and A1 subunits by expression in E. coli or other recombinant hosts, including other bacterial organisms (e.g., Salmonella typhimurium or typhi, Bacillus sp.), yeast (e.g., S. cerevisiae), and viruses (e.g., vaccinia and adenoviruses).

[0018] Mdtagenesis in accordance with this description enables production of mutants varying in diminished catalytic activity, ranging from variants which exhibit attenuated activity to those which are essentially free of such activity (i.e., less than 5%). This flexibility in approach is desirable because attenuation, rather than elimination, of catalytic activity may be helpful in providing a greater degree of and/or longer-lasting, protective response. Moreover, because of their diminished enzymatic activity, the analog subunits provided by this invention are expected to be less reactogenic.

DETAILED DESCRIPTION

[0019] The present invention provides high-level, direct recombinant expression of all CTX subunits necessary for vaccine production. Further, catalytic subunit analogs provide biological activity that is reduced in, or essentially free of, ADP-ribosyltransferase catalytic activity. The present analogs used alone, or in combination with B oligomer of the toxin (whether derived from natural sources or by recombinant means), can provide products that are useful in a vaccine and greatly reduce the likelihood of side-effects generally accepted to be associated with the catalytic activity in the native toxin. The toxin analogs of the present invention can be formulated into vaccine compositions or used in combination with other immunogenic agents in a multicomponent vaccine.

[0020] The individual cistronic elements, or portions thereof, encoding the A and B subunits of V. cholerae toxin were subcloned and directly expressed individually in a recombinant host cell system (i.e., E. coli). In the absence of a native signal peptide (substituted with a methionine to initiate translation), high levels of expression, in the range of 2% to 80% of total cell protein, were obtained. The fermentation of expressor cells resulted in mature species of rCTXA, rCTXA1 and rCTXB, as shown in Fig. 3. It should be noted that rCTXA is not processed to rCTXA1 and rCTXA2 in E. coli, presumably due to the absence of the specific enzyme or a failure of rCTXA to be compartmentalized with this enzyme. Thus, rCTXA possesses the A1 sequence covalently linked to the A2 sequence.

[0021] Amino acid analysis of selected recombinant molecules demonstrated that the heterologous (non-native) methionyl residue is not substantially removed from the various rCTX and rCTXA1 subunit species by cellular methionine aminopeptidase; thus, these are also methionyl-mature analogs. All of the recombinant proteins were recovered as inclusion bodies from lysed cells. The subunits were found to have migration patterns in reducing SDS-PAGE essentially identical to authentic native subunits, with the exception of rCTXA which is not processed in E. coli to result in cleavage of the A2 region from A1. As shown in Fig. 3, high-level recombinant expression of subunits CTXA, CTXA1 and CTXB in E. coli was achieved by direct, non-fusion means.

[0022] Although alternative methods and materials can be used in the practice of the present invention, the preferred methods and materials are described below.

MATERIAL AND METHODS FOR RECOMBINANT EXPRESSION OF CTXA, CTXA1 AND CTXB SUBUNITS

[0023] Materials. DNA modifying enzymes were purchased from New England Biolabs (Beverly, MA), Bethesda Research Laboratories (Gaithersburg, MD), Boehringer Mannheim Biochemicals, (Indianapolis, IN), and International Biotechnologies, Inc. (New Haven, CT); enzymes were used according to manufacturer recommendations. All chemicals and biochemicals were analytical reagent grade. Purified, naturally-occurring cholera toxin and toxin subunits were purchased from Sigma Chemical Company (St. Louis, MO) and List Biologicals (Campbell, CA) . Synthetic oligonucleotides were synthesized based on methods developed from the chemical procedure of Matteucci and Caruthers (18).

[0024] Plasmids and Bacterial Strains. Plasmids pRIT10810 and pRIT10841, (ATCC 39051 and ATCC 39053, respectively), containing the portions of the CTX operon, were obtained from the American Type Culture Collection, Rockville, MD. Expression plasmids pCFM1036, pCFM1146 and pCFM1156 were derived at Amgen.

[0025] A description of the expression vector system used herein is described in United States Patent No.4,710,473. Such plasmids contain an inducible promoter, a synthetic ribosome binding site, a cloning cluster, plasmid origin of replication, a transcription terminator, genes for regulating plasmid copy number, and a Kanamycin resistance gene. The derived plasmids differ from each other in a number of respects. The plasmid pCFM1036 can be derived from pCFM836 (see U.S. 4,710,473) by substituting the DNA sequence between the unique AstII and EcoRI restriction sites containing the synthetic P_L promoter with the following oligonucleotide :

This plasmid contains no inducible promoter preceding the restriction cluster. The plasmid pCFM1146 can be derived from pCFM836 by substituting the small DNA sequence between the unique Clal and XbaI restriction sites with the following oligonucleotide:

and by destroying the two endogenous NdeI restriction sites by end-filling with T4 polymerase enzyme followed by blunt-end ligation. The plasmid contains no synthetic ribosome binding site immediately preceding the restriction cluster. The plasmid pCFM1156 can be derived from pCFM1146 by substitution of the small DNA sequence between the unique XbaI and KpnI restriction sites with the following oligonuceotide which installs an optimized synthetic ribosome binding site:

[0026] Plasmids pBR322, pUC18, pUC19, and phage M13mp18 and M13mp19 DNA were purchased from Bethesda Research Laboratories. E. coli FM5 cells were derived at Amgen Inc., Thousand Oaks, CA from E. coli K-12 strain(19) from C.F. Morris and contain the integrated lambda phage repressor gene, CI₈₅₇(20). Construction of the individual subunit expression plasmids is described herein. Vector production, cell transformation, and colony selection were performed by standard methods(21).

[0027] Analytical Procedures. DNA sequencing was done by modification of the primer-extension, chain-termination method(22,23). Protein sequence analyses were performed by automated Edman degradation in an ABI 470A gas-phase microsequenator(24,25) and by standard enzymatic means, the latter to obtain carboxyl-terminal sequences of selected-proteins. SDS-polyacrylamide gel electrophoresis (SDS-PAGE) was performed essentially as described by Laemmli(26), and elution of polypeptides from polyacrylamide gels was similar to the method of Hunkapiller et al. (27). The ratio of recombinant protein to total cellular protein or total inclusion body protein was assessed by SDS-PAGE of whole-cell lysates followed by staining with Coomassie Brilliant Blue R250 and subsequent gel scanning by integrative densitometry.

[0028] Assays for the measurement of ADP-ribosyltransferase catalytic activity were done as follows: Native CTXA and recombinant subunits were incubated in a solubilization buffer of 8 M urea, 25 mM sodium phosphate (pH 7.0) and 10 mM dithiothreitol (DTT) for one hour at 37°C and centrifuged at 10,000 rpm for 15 minutes without refrigeration. The additions to the solubilization buffer were adjusted to yield 1 µg of native or recombinant A1 per 4 µL, which was then added to 60 µL of a reaction mixture (see below) and incubated for one hour on ice.

Reaction Mixture
Reagent*:	(final)/60 µl	(final)/100 µl
NaxPO4, pH 7.0, 1 M	416 mM	250 mM
DTT, 100 mM	5 mM	3 mM
GTP, 10 mM	167 µM	100 µM
Thymidine, 100 mM	17 mM	10 mM
MgCl2, 1 M	5 mM	3 mM
[32P]-NAD	2.5 µCi	2.5 µCi
NAD, 2500 µM	50 µM	30 µM

*The reagents were obtained from commercial sources. Naturally-occurring CTXA was acquired from List Laboratories. As a control, native CTXA was also assayed by incubation in the same buffer as above, but without urea, for 15 minutes at 37°C, then kept on ice until assayed for ADP-ribosyltransferase activity.

[0029] Thirty-six µL of water or a buffer containing human erythrocyte membranes(28) were added to yield a final volume of 100 µL for each sample and the samples incubated at 30°C. After 30 minutes, the reaction was terminated by adding 50 µL of 5 mM NAD and 0.03% sodium deoxycholate to each sample and the reaction mixture chilled on ice for 10 minutes. Fifty µL of 40% trichloroacetic acid (TCA) were then added, the samples placed on ice for at least 15 minutes; 2 mL of water were subsequently added to each sample, and the precipitated protein pelleted by centrifugation. The supernatants were removed and the pelleted protein was frozen. On the following day, the pelleted protein was subjected to SDS-PAGE(26,29). The gel was stained with Coomassie Brilliant Blue, destained, dried and subjected to autoradiography to measure the content of covalently linked [³²P]-labeled ADP-ribose in the proteins of'the various bands. An approximation of the specific activities of the recombinant CTXA1 and recombinant analog CTXA1 proteins (relative to the activity of native CTXA1) was obtained by densitometric scanning of the gels and autoradiograms. The stained gels were scanned to approximate the amount of individual protein added to each reaction mixture. The autoradiograms were scanned to estimate the amount of [³²P]ADP-ribose transferred to the G protein substrate as a function of the density of the autoradiographic image.

[0030] Construction of Expression Plasmids. All expression plasmids were constructed from a series of E. coli generalized expression vectors differing as described previously. The individual cholera toxin subunit gene segments were isolated using the restriction sites shown in Figs. 1 and 2. The upstream restriction site was just inside the codon for the amino-terminal residue of the mature, processed form of the subunit (i.e., without the signal sequence). For purposes of recombinant expression in E. coli, the portion of the CTX genes encoding their native signal peptides were deleted and substituted instead by a methionine initiation codon, for expression of the "methionyl-mature" form of the subunit analogs. Synthetic oligonucleotide linkers were employed to effect insertion of the gene segments into the expression plasmids at an optimal distance downstream of the synthetic promoter and ribosome binding site. The upstream linkers restored the reading frame of each gene back to the first codon of the mature amino terminus; the oligonucleotides included a methionyl initiation codon.

[0031] Following transformation of E. coli FM5 cells with the various plasmid constructs and plating on Kanamycin-containing agar, appropriate numbers of colonies were selected, replica-plated, grown as small liquid cultures ("minipreps"), and induced at 42°C for 4 hours. The minipreps were then screened by light microscopy for the presence of inclusion bodies in the bacterial cells. Preparations exhibiting apparent inclusions were identified and matching colonies from the replica plates subjected to flask-scale laboratory fermentation at the induction temperature. Samples were removed from fermentation at various times post-induction and examined for the appearance of the appropriate CTX subunit by SDS-PAGE followed by Coomassie Brilliant Blue-staining. The structure of the plasmid from each expression clone was confirmed by restriction mapping of the isolated plasmid and verified by DNA sequencing of junction regions.

[0032] Expression of Recombinant CTX, CTXA1 and CTXB. When E. coli cells containing, separately, the CTXA expression plasmid (pCTXA/A7/1156), the CTXA1 expression plasmid (pCTXA1/A7/1156), and the pCTXB expression plasmid (pCTXB/1156) were fermented at 37°C and 42°C, they produced major intracellular proteins (Figure 3) of approximately 27,215 daltons, 21,817 daltons and 11,600 daltons, respectively; recombinant CTXA1 and CTXB comigrated with authentic (native) CTXA1 and CTXB, respectively, in SDS-PAGE. Our recombinant CTXA has no native counterpart, since natural CTXA is cleaved to CTXA1 and CTXA2 by V. cholerae protease at some point before secretion from the organism; A1 and A2 are held together by a disulfide bond that is reduced by the buffers used in SDS-PAGE. Partial amino acid sequence analysis established that recombinant polypeptide CTXA1/A7 and CTXA1/L7 (see description below) had the amino terminal sequence predicted for the native CTXA1 subunit, but that the heterologous initiating methionine residue is not substantially removed.

[0033] Properties of Recombinant CTX Subunits. Very little, if any, of the CTX subunits appear to be secreted from the E. coli cells. The bulk of each subunit was found in the form of inclusion bodies and constituted 2% to 80% of total cellular protein. Cell lysis by French press and low speed centrifugation resulted in pellet fractions that contained up to 80% of their protein as the individual subunits. All the rCTX subunits were detectable in gels stained with Coomassie Brilliant Blue (Figure 3).

CTXA AND CTXA1 ANALOGS

[0034] Using techniques of protein engineering and site-specific mutagenesis(19,30), CTXA and CTXA1 analogs were made. From those analogs made and tested by the time of this submission, it was found that mutagenesis of the amino acid residues at positions arginine-7, histidine-44, histidine-70, glutamic acid-112, and aspartic acid-9, and truncation of the carboxyl terminus (at tryptophan-179 of the mature native CTXA sequence) resulted in diminished or essentially no ADP-ribosyltransferase activity.

[0035] Construction of the CTXA Expression Plasmid. Plasmid pRIT10841 (ATCC 39053) was cleaved with restriction enzymes XbaI and ClaI and a 552-bp DNA fragment was isolated by gel electrophoresis which contained the left-hand end of the CTXA gene to the region encoding the protease-sensitive portion that results in CTXA cleavage to CTXA1 and CTXA2. Plasmid pRIT10810 (ATCC 39051) was cleaved with restriction enzymes ClaI and HindII (the latter an isoschizomer of HincII) and a 368-bp DNA fragment was isolated that encoded a portion of the CTXA subunit from the protease-sensitive site (encoded at the ClaI site) (16,17) through the CTXA2 region, past the termination codon of CTXA, and into the alternative open reading frame of the CTXB subunit.

[0036] A synthetic oligonucleotide linker was prepared to reconstitute the open reading frame of CTXA from the site encoding the first amino acid of the mature protein sequence (asparagine) to the XbaI site. This linker possessed NdeI cohesiveness at its left-hand end in order to generate a methionine initiation codon that would substitute for the sequence encoding the signal peptide and to facilitate insertion of the gene construction into the expression vector; the right-hand end of the linker possessed an XbaI overlap. This linker possessed the sequence:

[0037] Plasmid pUC19 was digested with NdeI and XbaI and the linker above inserted. After ligation and transformation, a pUC plasmid named p2A/pUC19 was isolated that contained the linker sequence in place of the normal pUC19 NdeI-XbaI sequence.

[0038] Plasmid p2A/pUC19 was digested with XbaI and HincII. The large fragment from this digestion was ligated together with the 552-bp XbaI-ClaI DNA fragment containing the left-hand end of the CTXA gene and the 368-bp ClaI-HindII DNA fragment containing the right-hand end of the CTXA gene (past the termination codon and into the alternative open reading frame of the CTXB subunit). This produced a new plasmid containing the entire mature CTXA gene; this plasmid was called pCTXA/A7/pUC19.

[0039] The E. coli expression plasmid pCFM1156 was digested with NdeI and HindIII to remove this small portion of its cloning cluster. Plasmid pCTXA/A7/pUC19 was also digested with NdeI and HindIII, and a DNA fragment (772-bp) containing the entire region of the CTXA gene was isolated. This fragment was subsequently ligated into the digested pCFM1156 plasmid to produce the CTXA expression plasmid pCTXA/A7/1156. This NdeI-NdeI fragment could be inserted into pCFM1156 in either of two orientations, only one of which would produce an open reading frame giving rise to a large protein when expressed. This clone was selected (by analysis of induced clones by SDS-PAGE to identify the recombinant CTXA protein) and the proper orientation confirmed by DNA sequencing at the upstream NdeI junction region.

[0040] Construction of the CTXB Expression Plasmid. Plasmid pRIT10810 (ATCC 39051) was digested with Clal and BstXI and a 538-bp DNA fragment was isolated; this contained the the A2 coding region of CTXA, the entire CTXB coding region, and a short DNA sequence to the right of the termination codon of CTXB.

[0041] A synthetic oligonucleotide linker was prepared that permitted the cloning of the right-hand end of the DNA sequence above into pUC19. This linker possessed BstXl and HindIII cohesive ends and had the sequence:

[0042] Plasmid pUC19 was digested with HindIII and AccI (the latter generating a cohesive end compatible with that generated by Clal). The large pUC19 fragment was ligated with the 538-bp ClaI-BstXI DNA fragment containing the CTXB and the BstXI-HindIII linker to produce a plasmid called pCTXB/pUC19. This plasmid was then digested with HindIII and SspI (the latter just inside the initiation codon for CTXB and downstream from the ClaI site) to isolate a 345-bP SspI-HindIII fragment.

[0043] A synthetic oligonucleotide linker was prepared that possessed NdeI and SspI cohesive ends and the sequence:

[0044] Plasmid pCFM1156 was digested with NdeI and HindIII to remove this portion of its cloning cluster. The large pCFM1156 DNA fragment was then ligated with the 345-bp SspI-HindIII fragment containing a portion of the CTXB gene and the NdeI-SspI linker that restored its left-hand coding region and insinuated a methionine codon at the left of this coding region to initiate protein synthesis. The subsequent expression plasmid, containing the entire CTXB gene with a methionine initiation codon, was called pCTXB/1156.

[0045] Linker Mutagenesis. An oligonucleotide linker called L7 was synthesized to substitute a lysine codon for that of arginine-7 in CTXA. The sequence of this linker, with NdeI and XbaI cohesive ends, is shown in Table 1. The L7 linker was cloned into the NdeI-XbaI site of pUC19 to produce a plasmid called pL7/pUC19. Plasmid pL7/pUC19 was then digested with XbaI and HindIII to remove this portion of the pUC19 cloning cluster and replaced through ligation with the 552-bp XbaI-ClaI DNA fragment containing the left-hand end of the CTXA gene (see above) and the 368-bp ClaI-HindII DNA fragment containing the right-hand end of this gene (see above). This plasmid, called pCTXA/L7/pUC19, was digested with NdeI, and a 772-bp DNA fragment was isolated that possessed the entire mature CTXA gene with a substitution of the arginine-7 codon by a lysine codon. Plasmid pCFM1156 was digested with NdeI and ligated with the NdeI DNA fragment from pCTXA/L7/pUC19. This ligation produced a plasmid called pCTXA/L7/1156 for expression of the mature form of an Arg⁷→Lys analog of CTXA in E. coli. As with the case of pCTXA/A7/1156 (above), it was necessary to select a clone containing this plasmid with the DNA insert in the proper open reading frame for synthesis of rCTXA/L7.

[0046] Oligonucleotide linkers 1E and 1F were synthesized to individually substitute, respectively, a phenylalanine codon for that of tyrosine-6 and a glutamate codon for that of aspartate-9. These linkers possessed NdeI and XbaI cohesive ends and had the sequences shown in Table 1. Plasmid pCTXA/A7/pUC19 (see above) was digested with XbaI and HindIII, and a 938-bp DNA fragment containing the right-hand portion of the CTXA gene was isolated. Plasmid pCFM1156 was digested with NdeI and HindIII to remove this short region of its cloning cluster. This segment was replaced by ligation with the NdeI-XbaI linker containing either the Tyr⁶→Phe or the Asp⁹→Glu codon mutation (linkers 1E and 1F, respectively) and the 938-bp DNA fragment of the CTXA gene. This produced two plasmids, pCTXA/1E/1156 and pCTXA/1F/1156, for expression of the mature forms of the CTXA analogs Tyr⁶→Phe and Asp⁹→Glu, respectively, in E. coli.

[0047] The substitutions of sequences encoding mutations of glutamine for proline-185 and alanine for cysteine-187 resulted in CTXA gene fragments encoding only the CTXA1 portion of the CTXA subunit (see below for construction of the native-sequence CTXA1 gene and the L7, 1E, and 1F substitution analogs of CTXA1 from the CTXA gene and its substitution analogs, respectively). Oligonucleotide linkers 1G and 1H were synthesized to individually substitute, respectively, glutamine for proline-185 and alanine for cysteine-187. These linkers had DsaI and HindIII cohesive ends and possessed the sequences shown in Table 1. To effect the construction of the expression plasmids encoding the analog proteins, a 537-bp NdeI-DsaI DNA fragment was isolated from plasmid pCTXA/A7/pUC19. Plasmid pCFM1156 was then digested with NdeI and HindIII to remove this short segment of its cloning cluster. This segment was replaced by ligation with the 537-bp DNA fragment from pCTXA/A7/pUC19 and either 1G or 1H synthetic oligonucleotides. The linkers, in addition to encoding the specific amino acid substitutions, eliminate from the CTXA gene that portion encoding the A2 region of the CTXA subunit; thus, these mutations are exclusively in CTXA1 versions of the subunit. The resulting plasmids for expression of the Pro¹⁸⁵→Gln and Cys¹⁸⁷→Ala analogs of CTXA1 were called pCTXA1/1G/1156 and pCTXA1/1H/1156, respectively.

[0048] A plasmid expressing a carboxyl-terminal truncated version of CTXA1 terminating at Trp¹⁷⁹ was constructed. This was accomplished by first digesting plasmid pCFM1156 with NdeI and HindIII to remove this short DNA fragment. Into this site in pCFM1156 was ligated the 537-bp NdeI-DsaI fragment from pCTXA/A7/PUC19 (see above) and a synthetic DNA fragment with DsaI and HindIII cohesive ends, and having the sequence:

This plasmid, for expression of CTXA1 truncated at Trp¹⁷⁹, was called pCTXA1/T1/1156.

[0049] Mutagenesis By Site-directed Priming. Mutagenesis by site-directed priming was accomplished with kits of the "Altered Sites™ in vitro Mutagenesis System" purchased from Promega Corporation (Madison, WI); details of the experimental protocols for this procedure are contained in the technical manual available from Promega Corporation (printed 1/90).

[0050] To facilitate mutagenesis, a 938-bp XbaI-HindIII DNA fragment encoding a portion of the CTXA subunit was isolated from plasmid pCTXA/A7/pUC19 (see above). This fragment was cloned into the pSELECT1 phagemid vector from Promega. After packaging with helper phage, this vector contained a negative-sense copy of the CTXA fragment. A series of single-stranded, positive-sense DNA primers were synthesized to effect mutagenesis; the sequences of these primers (1B, 1C, 1D, and 1I) are shown in Table 1. These primers were individually annealed with the single-stranded phagemid containing the CTXA gene fragment; double-stranded phagemids were subsequently produced which contained the gene fragment and the individual codon substitutions encoded by the primers.

[0051] For preparation of plasmids capable of expressing the CTXA and CTXA1 subunit analogs containing a lysine substitution for arginine-146, a 207-bp BstXI-ClaI DNA fragment was isolated from the double-stranded phagemid containing the Arg¹⁴⁶→Lys codon mutation (1I). A 375-bp NdeI-BstXI DNA fragment and a 386-bp ClaI-HindIII fragment (for the CTXA version) containing a portion of the CTXA gene were isolated from plasmid pCTXA/A7/pUC19. Plasmid pCFM1156 was digested with NdeI and HindIII to remove this short portion of its cloning cluster. For construction of the CTXA version of the Arg¹⁴⁶→Lys mutation, the digested pCFM1156 plasmid was ligated with the 375-bp NdeI-BstXI fragment from pCTXA/A7/pUC19, the 209-bp BstXI-ClaI fragment from the double-stranded phagemid, and the 386-bp ClaI-HindIII DNA fragment from pCTXA/A7/pUC19. This resulted in a plasmid called pCTXA/lI/1156 for expression of the Arg¹⁴⁶→Lys analog of the CTXA subunit in E. coli. For construction of this mutation in the CTXA1 version of the subunit, the digested pCFM1156 plasmid was ligated with the 375-bp NdeI-BstXI fragment from pCTXA/A7/pUCl9, the 209-bp BstXI-ClaI fragment isolated from the double-stranded phagemid, and a synthetic oligonucleotide linker that replaces a region of CTXA encoding the A2 portion of CTXA with a DNA sequence encoding the end of the A1 region and including a codon that terminates polypeptide synthesis at the end of CTXA1. This linker possessed Clal and HindIII cohesive ends and had the sequence:

[0052] The resultant plasmid for expression of the Arg¹⁴⁶→Lys analog of CTXA1 in E. coli was called pCTXA1/1I/1156.

[0053] Preparation of plasmids capable of expressing individual analogs of CTXA containing the substitutions of His⁴⁴→Asn, His⁷⁰→Asn, or Glu¹¹²→Gln was facilitated with primers (1B, 1C, and 1D, respectively) having the sequences shown in Table 1. After annealing of the primers individually to the pSELECT1 phagemid containing the 938-bp XbaI-HindIII CTXA fragment from pCTXA/A7/pUC19 (see above) and recovering double-stranded plasmid, the regions containing the site-specific mutations were excised from the plasmid by digesting with XbaI and HindIII, and recovering a 938-bp DNA fragment in each case. Plasmid p2A/pUC19 (containing an NdeI-XbaI linker encoding the left-hand end of the mature CTXA; see above) was digested with XbaI and HindIII to remove this short region of the pUC19 cloning cluster to the right of the linker insert; this region was replaced by ligation with the 938-bp XbaI-HindIII fragment from the plasmid containing a single codon replacement. This series of pUC-derived plasmids were called pCTXA/1B/pUC19, pCTXA/1C/pUC19, and pCTXA/1D/pUC19, depending upon the codon replacement they contained. A DNA fragment containing the codon replacement was subsequently excised from each of these plasmids. Plasmid CTXA/A7/pUC19 was digested with BstXI and HindIII and a 593-bp DNA fragment was isolated. Plasmid pCFM1156 was digested with NdeI and HindIII to remove this short region of its cloning cluster, as described earlier, and this replaced by ligation with the individual CTXA analog gene inserts recovered from the pUC transition plasmids above and the 593-bp BstXI-HindIII DNA fragment from pCTX/A7/pUC19. When isolated, these new plasmids for expression of the site-specific analogs His⁴⁴→Asn, His⁷⁰→Asn, and Glu¹¹²→Gln of CTXA in E. coli were called pCTXA/lB/1156, pCTXA/lC/1156, and pCTXA/1D/1156, respectively.

[0054] Conversion of CTXA and CTXA Analog Genes to CTXA1 and CTXA1 Analog Genes. With the exception of the plasmid containing the 1I codon substitution (pCTXA1/1I/1156), which was constructed during the mutagenesis process to lack the A2-encoding region, it was useful to convert the CTXA gene-containing and selected individual analog gene-containing expression plasmids to CTXA1 expression plasmids in order to express the A1 truncated version of CTXA that mimicked the native species of this subunit in reduced holotoxin preparations. To perform this conversion, it was necessary to delete a portion of the gene sequence of the CTXA gene (and the analog genes) to the right of the unique ClaI site. Although the actual site of polypeptide cleavage between the A1 and A2 regions has not been resolved in the prior art literature(16,17), it was decided to initially establish the carboxyl terminus of A1 at serine-194; it should be noted, however, that establishing the terminus at arginine-192 (the other terminus proposed in the literature) is a simple matter of inserting a new linker to substitute a termination codon immediately to the right of the arginine-192 codon.

[0055] For our purposes, each of the analog CTXA sequences (and the native CTXA sequence) we wished to convert to CTXA1 versions were excised from their pUC19 transition plasmids (i.e., pCTXA/A7/pUCl9, pCTXA/1B/pUC19, pCTXA/1C/pUC19, pCTXA/1D/pUC19, pCTXA/1E/pUC19, pCTXA/1F/pUC19, pCTXA/1G/pUC19, pCTXA/1H/pUC19) with restriction enzymes NdeI (at the sequence encoding the methionine initiation codon) and ClaI (at the site chosen for addition of a termination codon immediately to the right of the serine-194 codon); this DNA fragment was 585-bp in each case. For purposes of substituting a termination codon for the A2-encoding region and subsequent ligation of the gene segments into plasmid pCFM1156, an oligonucleotide linker was synthesized to possess ClaI and HindIII cohesive ends and had the following sequence:

[0056] Plasmid pCFM1156 was digested with NdeI and HindIII to remove this portion of its cloning cluster; this region was replaced by ligation with the Clal-HindIII linker and with an individual 585-bp DNA fragment from one of the pUC transition plasmids described above. Isolation of plasmid DNA following these ligations resulted in a series of plasmids capable of expressing CTXA1 and CTXA1 analog polypeptides in E. coli; plasmids prepared in this manner included pCTXA1/1B/1156, pCTXA1/1C/1156, pCTXA1/1D/1156, pCTXA1/1E/1156, and pCTXA1/1F/1156,.

[0057] Expression and Analysis of CTXA and Recombinant Analogs. Following preparation, each plasmid was used to transform a separate preparation of fresh, competent FM5 cells. Transformants were picked, grown as minipreps, induced to produce recombinant protein, and inclusion body-positive samples identified by light microscopy. These samples were fermented at a larger scale (≥ 1 liter) at the induction temperature to prepare greater amounts of each recombinant analog protein. Isolated cell pastes were lysed in a French press after resuspension in distilled H₂O with 1 mM DTT. Inclusion bodies were isolated from these lysates by simple low-speed centrifugation. These inclusion-body protein preparations contained as little as 2% and as much as 80% of the recombinant proteins. The samples were assessed for ADP-ribosyltransferase activity as previously described. The results obtained are shown in Figs. 4, 5, and 6 and in Table 2.

[0058] Figure 4 shows a stained SDS-polyacrylamide gel (Panel A) of inclusion-body preparations of rCTXAl and its site-specific analogs. An amount of protein identical to that shown in this gel was used to catalyze the'individual ADP-ribosyltransferase reactions. Trichloroacetic acid (TCA) precipitates from these reactions were also run in SDS-PAGE and the gels subjected to autoradiography to illuminate the [³²P]ADP-ribose-labeled substrates. Panel B illustrates the results of the reactions without added G protein-containing human erythrocyte membrane preparation and Panel C shows the reactions with this added substrate.

[0059] The most important finding of these experiments is found in Figure 4, Panel C (and confirmed in Panel B): certain site-specific amino acid residue substitutions result in diminishment and, in some cases, apparently complete loss of enzyme activity as measured in this assay. In this regard, rCTXA1/L7 (Arg⁹→Lys), rCTXA1/1B (His⁴⁴→Asn) and rCTXA1/1D (Glu¹¹²→Gln) analog subunits appear to possess virtually no enzyme activity, whereas analogs rCTXA1/1C (His⁷⁰→Asn) and rCTXA1/1F (Asp⁹→Glu) appear to have reduced activity when compared with both native CTXA (with urea) and rCTX1/A7 (no mutation other than the methionine residue at the amino terminus). Truncation at Trp¹⁷⁹ (rCTXA1/T1/1156) also results in an analog A subunit with severely diminished enzyme activity.

[0060] Although these autoradiographic assays of enzyme activity are not strictly quantitative, we have attempted to derive a quantitative assessment from the gel and autoradiograms of Figure 4 to illustrate in a numerical sense what can be visually observed. This evaluation is found in Table 2. Here, we subjected the stained SDS-polyacrylamide gel (Fig. 4, Panel A), containing rCTXA1 and each of the analogs described previously, to integrative scanning densitometry to more accurately assess the relative amount of each protein added to the assay; these were related to the amount of A1 subunit in native CTXA (without urea) added to the assay, taken as a value of 1.00 µg. Although an attempt was made to add equivalent amounts of each protein to the assays (estimated on the basis of the percentage of subunit protein in each inclusion body preparation), it can be seen that this estimation may have lacked precision. The autoradiogram of the subsequent enzyme reactions with G protein substrate (Fig. 4, Panel C) was also subjected to densitometry to determine the relative density of the radiographic image of the radiolabeled G protein a subunit band with that labeled by native CTXA (no urea) taken as 100%. An approximate-relative specific activity was then calculated by dividing the image density by the amount of added enzyme, with the specific activity of native CTX (without urea) taken as 1.00. It should be noted that the results of this type of quantitation are subject to certain experimental limitations (e.g., assumption of equal dye staining by each of the subunit preparations, band selection and circumscription for digitized densitometry, densitometer response characteristics, and assumption of a linear relationship between [³²P]ADP-ribose labelling and radiographic density). Nevertheless, the results (Table 2) illustrate in a numerical manner what can be visually observed in the autoradiograms: marked diminishment of enzyme activity in analogs rCTXA1/1C (His⁷⁰→Asn), rCTXA1/1F (Asp⁹→Glu), and rCTXA1/T1(Trp¹⁷⁹ truncation) and virtual loss of activity by analogs rCTXA1/L7 (Arg⁹→Lsy), rCTXA1/1B (His⁴⁴→Asn), and rCTXA1/1D (Glu¹¹²→Gln).

[0061] In the case in which no exogenous substrate is added (Figure 4, Panel B), both native CTXA and the enzymatically-active CTXA1 proteins can be seen to be autocatalytic, i.e., to catalyze the hydrolysis of NAD and the transfer of ADP-ribose to the enzyme itself (either in cis, in trans, or both). Multiple bands seen in the autoradiogram may be due to contaminating E. coli proteins capable of being ADP-ribosylated; alternatively, yet unlikely, they may represent minor variants of the subunit proteins (e.g., proteolytically-nicked or, perhaps, variants possessing some residual secondary structure in SDS). Recombinant CTXA1 preparations appear much more capable of participating in the autocatalytic process than does the A subunit of native CTX. The reasons for this increased autoribosylation are not presently understood, although it may be related to lack of substrate specificity by the yet-to-be-renatured recombinant protein, exposure of a sensitive ribosylation site in the recombinant protein as a result of improper secondary structure (no attempt was made in this particular experiment to achieve native conformation), or to the presence of ARFs (ADP-ribosylation factors) (31-37) in the crude recombinant preparations that stabilize the autocatalysis. However, when G protein substrate is added in the form of human erythrocyte membranes (Panel C), the focus of the ADP-ribosyltransferase reaction is shifted to this substrate, quenching autoribosylation.

[0062] Figure 5 demonstrates that the same general pattern of diminishment and loss of enzyme activity seen with the rCTXA1 analogs is also observed when the same residue substitutions are made in rCTXA versions of the recombinant subunit (i.e., versions with the A2 "tail" still covalently linked). However, the presence of the A2 region appears to significantly reduce the ADP-ribosyltransferase of the enzymatically-active proteins. This reduction is more clearly illustrated in Figure 6, in which identical amounts of rCTXA and rCTXA1 are evaluated in the enzyme assay (Panel A), the radiolabeled'products run on the same gel, and consequently subjected to equivalent autoradiographic exposure times (Panel B). As can be seen, rCTXA1 appears to possess greater activity than rCTXA (compare lanes 7 and 4). Again, neither subunit construction with the Arg⁹→Lys substitution (lanes 5 and 8) possess measurable ADP-ribosyltransferase activity for the G protein substrate. That this loss of enzyme activity in the analogs is not the result of E. coli contaminants suppressing catalysis is evident by the ability of native CTXA to ribosylate G protein in the presence of the E. coli-produced, analog-containing preparations (lanes 6 and 9).

[0063] Because of their reduction or essential elimination of a major marker of toxic activity (ADP-ribosyltransferase), the recombinant CTXA1 analog molecules produced by clones pCTXA1/L7/1156, pCTXA1/1B/1156, pCTXA1/1C/1156, pCTXA1/1D/1156, pCTXA1/1F/1156, and pCTXA1/T1/1156, as well as their rCTXA analog counterparts, are anticipated to have application alone or in combination with CTXB in safer vaccines. The described mutations would not be expected to reduce the normal, protective, immunogenic properties of native CTX subunits. The CTXA and CTXA1 analogs of this invention thus have application in combination with CTXB subunits in the form of a holotoxoid. The CTXB subunits may augment the immune response to CTXA and CTXA1, and vice-versa, and each may have protective epitopes. The CTXB subunits can be derived from V. cholerae or can be genetically-engineered subunits and their analogs. Genetically-engineered subunit products can include fusion proteins and non-fusion proteins.

[0064] Strategies identical to those described above were employed to prepare additional recombinant analogs of the CTXA subunit of cholera toxin. The synthetic oligonucleotides utilized to effect codon substitutions, whether by linker mutagenesis or by mutagenesis by site-directed priming, are shown in Table 3. Briefly, analog CTXA1/1J (Asp⁹→Tyr) was prepared by linker mutagenesis as described for analog CTXA1/1F (Asp⁹→Glu), with the exception that the synthetic oligonucleotide possessed the appropriate codon substitution. For the construction of analogs CTXA1/1K (Ser¹⁰→Gly), CTXA1/1L (Arg¹¹→Lys), and CTXA1/1M (Arg¹¹→His), a novel DraII (also known as EcoO109I) restriction site was introduced into the CTXA1 gene by site-directed priming utilizing the following synthetic oligonucleotide primer:

Introduction of this site permitted linker mutagenesis in this region of the gene (using the previously-described NdeI site to the left of the insertion site and the newly-created DraII site to the right of the insertion site) to effect the codon changes that resulted in these three analogs. Site-directed priming was the method used to create the codon changes resulting in analogs CTXA1/1N (His⁴⁴→Tyr), CTXA1/1"O" (His⁴⁴→Gln), CTXA1/1P (His⁴⁴→Val), CTXA1/1Q (His⁷⁰→Tyr), CTXA1/1R (His⁷⁰→Gln), and CTXA1/1S (His⁷⁰→Val).

[0065] With two exceptions, each of these analogs was expressed in recombinant E. coli and the isolated inclusion bodies were tested for their enzymatic ability to ADP-ribosylate either G_sα in human erythrocyte membrane preparations or, especially in the case of the His⁴⁴ and His⁷⁰ analogs, their ability to ADP-ribosylate G_sα and/or tubulin in membrane preparations of H27 cultured human foreskin fibroblasts (provided by the University of California, San Francisco). The exceptions were for analog CTXA1/1J (Asp⁹→Tyr), which was recombinantly expressed but not assayed for activity, and analog CTXA1/1L (Arg¹¹→Lys), for which a linker had been synthesized and cloning performed, but for which a correct-sequence clone had not been isolated.

[0066] The results of these analyses are presented in Figures 4 and 7, and are summarized in Table 4, Figure 4 provides comparative data for analogs reported in Table 1. Among the additional analogs described in Figure 7 and Table 4 are three having different substitutions at His⁴⁴ (CTXA1/1N, CTXA1/1"O", CTXA1/1P). The absence of measurable enzyme activity in these analogs, in addition to lack of activity in previously-described analog CTXA1/1B (His⁴⁴→Asn), indicates that these specific substitutions at His⁴⁴ lead to inactivation of the subunit of cholera toxin possessing the intrinsic toxic activity of the multimeric molecule. Based on these results, it is likely that any substitution at this residue will produce such inactivation.

[0067] Three analogs (CTXA1/1Q, CTXA1/1R, CTXA1/1S) having substitutions for His⁷⁰ are also among those described. These analogs are in addition to the analog CTXA1/1C (His⁷⁰→Asn) of Table 1. As shown in Figure 7, all four His⁷⁰ analogs possess reduced ability to ADP-ribosylate G_sα substrate, although they clearly retain the ability to ADP-ribosylate other non-G_sα protein substrates (e.g., tubulin in H27 fibroblasts). Thus, substitutions for His⁷⁰ result in apparent reduction of activity of CTXA1 for the specific G_sα substrate believed to be involved in the pathognomonic cytotoxic response to cholera toxin. Such substitutions, if made in CTXA1 involved in a formed holotoxin multimer, would therefore likely result in an attenuated cholera toxin molecule as opposed to one totally lacking toxic properties.

[0068] Analysis of two additional analogs is shown in Figure 8. CTXA1/1K (Ser¹⁰→Gly) retains the catalytic activity associated with the native CTXA molecule. Substitution of His for Arg¹¹ (CTXA1/1M) results in an analog having little or no measurable enzymatic activity. It would be expected that analog CTXA1/1L (Arg¹¹→Lys) will also have significantly diminished activity when isolated and assayed, a conclusion which is supported by the findings of Table 1, (see Arg⁷→Lys).

IN VITRO ASSOCIATION OF rCTX SUBUNITS

[0069] A number of methods by which native cholera toxin can be dissociated and the individual subunits reassociated in vitro to reform the holotoxin molecules have been described in the literature(36,37). In vitro reassociation of the subunits of pertussis toxin has also been described in the literature for native subunits(38-40). Using a similar procedure, recombinant CTX subunits can be isolated, associated in vitro to form holotoxin-like species, and purified. In general, following expression and recovery, the individual subunits are combined in stoichiometric ratios (based on their relative content of specific subunit protein, if in the form of inclusion body preparations), approximating the ratio of subunits found in native CTX holotoxin. The preparation is solubilized in an aqueous solution containing a chaotropic agent or a detergent, or both. The preparation is subjected to reducing conditions (generally a reducing agent or a hydrogen atmosphere, or both) and then oxidized (with either an oxidizing agent or under an oxygen-enriched atmosphere, or both) to reform the necessary intramolecular disulfide bridges. Association of the subunits into holotoxin-like species is accomplished by diminishment or removal of the chaotropic or detergent solubilizing agent. This can be accomplished by a variety of means, to include filtration and buffer exchange by dialysis chromatography. The holotoxin-like species are then purified by conventional means, e.g., ion exchange, size-exclusion and affinity chromatography. It should be noted that B multimeric species, without the A subunit, may be recovered by similar means if inclusion-body preparations of the latter subunit are not added.

[0070] The genetically engineered analog subunits of this invention can be formulated, in a conventional manner, into a toxoided cholera vaccine. In the case of a toxin that has been "genetically" inactivated, such as cholera toxin in the present invention, further inactivating steps (such as chemical treatment or heat treatment) should not usually be required since these products are produced in non-pathogenic organisms and are inherently free of the enzyme activities that are generally accepted to elicit the adverse reactions to whole-cell cholera vaccines. Nevertheless, it is necessary to control purity of the recombinant product, particularly with regard to the endotoxin content. In general, recombinant holotoxoid, recombinant holotoxoid-like macromolecules, recombinant B subunit macromolecules, recombinant B subunit alone or possibly B subunit recombinant analogs, and even A subunit analogs alone described in the present invention as potential vaccinating antigens would be purified to ≥90% homogeneity. The nature and estimated quantity of contaminants, if any, would be evaluated to ensure that the extent of endotoxin contamination meets the standards of the individual regulatory agencies.

[0071] For purposes of parenteral delivery, the vaccine materials would normally be adsorbed onto aluminum adjuvants. This can be accomplished by at least two means: precipitation with preformed alum and precipitation with aluminum salts. The adsorbed precipitates are then resuspended in an excipient to yield a dosage concentration of vaccine antigen generally in the range of 5-100 µg per dose and an alum amount usually not exceeding 1.5 mg/dose; volume per dose is in the range of 0.1-1.0 ml. The suspending excipient is commonly a buffered solution (e.g., phosphate-buffered saline, pH 7.0), may have added stabilizers (e.g., glycerol), and will likely contain a preservative (e.g., 0.01% Thimerosol) to prevent microbial contamination and to extend shelf life.

[0072] The formulation and delivery of recombinant cholera toxoid, or subcomponents thereof, via live vector systems as also encompassed within this invention will depend upon the nature of that system. For example, oral delivery of recombinant (mutant) V. cholerae, Salmonella sp., vaccinia virus, or adenovirus carrying genes for the A or A and B subunits, might well be encapsulated in enteric-coated delivery vehicles for passage to the gut or in aerosolizable forms (e.g., with liposomes) for targeting to the respiratory tract in order to elicit secretory immunoglobulin A antibodies for protection at mucosal surfaces. Alternatively, other oral forms of the vaccine can be prepared in accordance with procedures described in the literature, suitably adapted to accommodate the present antigenic agents. For instance, a recombinant V. cholerae strain can be lyophilized and mixed with a bicarbonate buffer to neutralize gastric acidity(41); or a holotoxoid in accordance with this invention can be used in the form of an effervescent tablet, appropriately buffered, to supplement a killed, whole-cell vaccine(1).

[0073] While this invention has been specifically illustrated in relation to recombinant production in E. coli, it will be appreciated by those skilled in the art that the principles for mutagenesis of the analog subunits as described herein may be employed in connection with other recombinant hosts and expression systems, and to produce other inactivated analogs of the toxin. Further, it should be understood that assembly of mutant analogs into a holotoxoid can take place in intact cells via homologous recombination, e.g., in V. cholerae, rather than in vitro. It is intended that the present invention include all modifications and improvements as come within the scope of the present invention as claimed.

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Claims

1. A recombinant DNA molecule, at least a portion of which encodes an analog of the region A or the subregion A1 of cholera toxin said analog comprising a site-specific mutation in one or more of the sites of said region or subregion selected from among arginine-7, arginine-11, aspartic acid-9, histidine-44, histidine-70, and glutamic acid-112, or a truncation of the carboxyl terminal portion beginning at tryptophan-179, wherein said analog has reduced or no catalytic activity associated with cholera toxin reactogenicity as determined by assay of ADP-ribosyltransferase activity.

2. The recombinant DNA molecule of claim 1, wherein the analog is capable of eliciting a cholera toxin-neutralizing immune response.

3. The recombinant DNA molecule of claim 1, which is obtainable by site-specific mutagenesis resulting in an analog of the region A or the subregion A1 of cholera toxin which is less active or essentially inactive as determined by assay of ADP-ribosyltransferase activity.

4. The recombinant DNA molecule of claim 1, which also encodes subunit B of cholera toxin.

5. A genetically engineered analog of the region A or the subregion A1 of cholera toxin, comprising a site-specific mutation in one or more of the sites of said subunits selected from among arginine-7, arginine-11, aspartic acid-9, histidine-44, histidine-70, and glutamic acid-112, or a truncation of the carboxyl terminal portion beginning at tryptophan-179, said analog having reduced or essentially no catalytic activity associated with cholera toxin reactogenicity as determined by assay of ADP-ribosyltransferase activity.

6. The analog of claim 5, which is capable of eliciting a cholera toxin-neutralizing immune response.

7. The analog of claim 5, which is obtainable by site-specific mutagenesis resulting in a mutation of the region A or the subregion A1 which is less active or essentially inactive as determined by assay of ADP-ribosyltransferase activity.

8. An improved anti-cholera vaccine comprising an effective amount of an analog of the region A or the subregion A1 of cholera toxin, said analog comprising a site-specific mutation in one or more of the sites of said region A or subregion A1 selected from among arginine-7, arginine-11, aspartic acid-9, histidine-44, histidine-70, and glutamic acid-112, or a truncation of the carboxyl terminal portion beginning at tryptophan-179, wherein said toxin has a biological activity which (a) can elicit a . cholera toxin-neutralizing immune response and (b) has reduced or essentially no catalytic activity associated with cholera toxin reactogenicity as determined by assay of ADP-ribosyltransferase activity.

9. The improved vaccine of claim 8, wherein the toxin-neutralizing immune response provides immunoprotection against cholera disease.

10. The improved vaccine of claim 8, wherein the analog has been derived by site-specific mutagenesis resulting in a mutation of the region A or the subregion A1 of cholera toxin which has less or essentially no ADP-ribosyltransferase activity.

11. The improved vaccine of claim 8, wherein the analog of the region A or subregion A1 is associated with the B oligomer.

12. The improved vaccine of claim 11, wherein the B oligomer is the native form.

13. The improved vaccine of claim 11, wherein the B oligomer has been genetically engineered.

14. A prokaryotic or eukaryotic cell transformed with a DNA molecule according to claim 1 which is capable of expressing the polypeptide product or products encoded by said DNA molecule.

15. An E. coli host cell according to claim 14.

16. A Vibrio cholerae host cell according to Claim 14.

Ansprüche

1. Rekombinantes DNA-Molekül, von dem wenigstens ein Teil ein Analogon der Region A oder der Subregion A1 von Choleratoxin kodiert, wobei das Analogon eine Stellen-spezifische Mutation an einer oder mehreren Stellen der Region oder Subregion, ausgewählt aus Arginin-7, Arginin-11, Asparaginsäure-9, Histidin-44, Histidin-70 und Glutaminsäure-112 oder eine Verkürzung des Carboxy-terminalen Teils, beginnend bei Tryptophan-179, umfasst, und wobei das Analogon eine verminderte oder keine katalytische Aktivität besitzt, die mit einer Reaktogenizität von Choleratoxin in Verbindung steht, wie bestimmt durch einen Test der ADP-Ribosyltransferase-Aktivität.

2. Rekombinantes DNA-Molekül gemäß Anspruch 1, wobei das Analogon zur Erzeugung einer Choleratoxin-neutralisierenden Immunreaktion fähig ist.

3. Rekombinantes DNA-Molekül gemäß Anspruch 1, erhältlich durch Stellen-spezifische Mutagenese, die in einem Analogon der Region A oder der Subregion A1 von Choleratoxin resultiert, das weniger aktiv oder im wesentlichen inaktiv ist, wie bestimmt durch einen Test der ADP-Ribosyltransferase-Aktivität.

4. Rekombinantes DNA-Molekül gemäß Anspruch 1, das ebenfalls für die Untereinheit B von Choleratoxin kodiert.

5. Genetisch verändertes Analogon der Region A oder der Subregion A1 von Choleratoxin, umfassend eine Stellen-spezifische Mutation an einer oder mehreren Stellen der Untereinheiten, ausgewählt aus Arginin-7, Arginin-11, Asparaginsäure-9, Histidin-44, Histidin-70 und Glutaminsäure-112 oder eine Verkürzung des Carboxy-terminalen Teils, beginnend bei Tryptophan-179, wobei das Analogon eine verminderte oder im wesentlichen keine katalytische Aktivität besitzt, die mit der Reaktogenizität von Choleratoxin in Verbindung steht, wie bestimmt durch einen Test der ADP-Ribosyltransferase-Aktivität.

6. Analogon gemäß Anspruch 5, das zur Erzeugung einer Choleratoxin-neutralisierenden Immunreaktion fähig ist.

7. Analogon gemäß Anspruch 5, erhältlich durch in einer Mutation der Region A oder der Subregion A1 resultierende Stellen-spezifische Mutagenese, das weniger aktiv oder im wesentlichen inaktiv ist, wie bestimmt durch einen Test der ADP-Ribosyltransferase-Aktivität.

8. Verbesserte Anti-Cholera-Vaccine, umfassend eine wirksame Menge eines Analogons der Region A oder der Subregion A1 von Choleratoxin, wobei das Analogon eine Stellen-spezifische Mutation an einer oder mehreren Stellen der Region A oder Subregion A1, ausgewählt aus Arginin-7, Arginin-11, Asparaginsäure-9, Histidin-44, Histidin-70 und Glutaminsäure-112 oder eine Verkürzung des Carboxy-terminalen Teils, beginnend bei Tryptophan-179, umfasst, wobei das Toxin eine biologische Aktivität besitzt, die (a) eine Cholera-toxin-neutralisierende Immunreaktion hervorrufen kann und (b) eine verminderte oder im wesentlichen keine katalytische Aktivität besitzt, die mit einer Reaktogenizität von Choleratoxin in Verbindung steht, wie bestimmt durch einen Test der ADP-Ribosyltransferase-Aktivität.

9. Verbesserte Vaccine gemäß Anspruch 8, wobei die Toxin-neutralisierende Immunreaktion für eine Immunoprotektion gegen eine Choleraerkrankung sorgt.

10. Verbesserte Vaccine gemäß Anspruch 8, wobei das Analogon durch Stellen-spezifische Mutagenese abgeleitet wurde, die in einer Mutation der Region A oder der Subregion A1 von Choleratoxin resultiert, das weniger oder im wesentlichen keine ADP-Ribosyltransferase-Aktivität besitzt.

11. Verbesserte Vaccine gemäß Anspruch 8, wobei das Analogon der Region A oder Subregion A1 mit dem B-Oligomer assoziiert ist.

12. Verbesserte Vaccine gemäß Anspruch 11, wobei das B-Oligomer in der nativen Form vorliegt.

13. Verbesserte Vaccine gemäß Anspruch 11, wobei das B-Oligomer genetisch verändert wurde.

14. Prokaryontische oder eukaryontische Zelle, die mit einem DNA-Molekül gemäß Anspruch 1 transformiert wurde und zur Expression des von dem DNA-Molekül kodierten Polypeptid-Produkts oder der kodierten Polypeptid-Produkte fähig ist.

15. E. coli-Wirtszelle gemäß Anspruch 14.

16. Vibrio cholerae-Wirtszelle gemäß Anspruch 14.

Revendications

1. Molécule d'ADN recombiné, dont au moins une portion code pour un analogue de la région A ou la sous-région A1 de la toxine du choléra, ledit analogue comprenant une mutation spécifique d'un site dans un ou plusieurs des sites de ladite région ou sous-région choisie parmi l'arginine-7, l'arginine-11, l'acide aspartique-9, l'histidine-44, l'histidine-70 et l'acide glutamique-112, ou une troncature de la portion terminale carboxyle commençant au tryptophane-179, tandis que ledit analogue a une activité catalytique réduite ou inexistante, associée à la réactogénicité de la toxine du choléra, telle que déterminée par le test de l'activité d'ADP-ribosyltransférase.

2. Molécule d'ADN recombiné selon la revendication 1, dans laquelle l'analogue est capable de déclencher une réponse immunitaire neutralisant la toxine du choléra.

3. Molécule d'ADN recombiné selon la revendication 1, qui peut être obtenue par mutagénèse spécifique d'un site produisant un analogue de la région A ou de la sous-région A1 de la toxine du choléra qui est moins active ou pratiquement inactive comme déterminé par un test de l'activité d'ADP-ribosyltransférase.

4. Molécule d'ADN recombiné selon la revendication 1, qui code également pour la sous-unité B de la toxine du choléra.

5. Analogue obtenu par génie génétique de la région A ou de la sous-région A1 de la toxine du choléra,
comprenant une mutation spécifique d'un site dans un ou plusieurs des sites des dites sous-unités choisies parmi l'arginine-7, l'arginine-11, l'acide aspartique-9, l'histidine-44, l'histidine-70 et l'acide glutamique-112, ou une troncature de la portion terminale carboxyle commençant au tryptophane-179, ledit analogue ayant une activité catalytique réduite ou pratiquement inexistante, associée à la réactogénicité de la toxine du choléra, telle que déterminée par le test de l'activité d'ADP-ribosyltransférase.

6. Analogue selon la revendication 5, qui est capable de déclencher une réponse immunitaire neutralisant la toxine du choléra.

7. Analogue selon la revendication 5, qui peut être obtenu par mutagénèse spécifique d'un site ayant pour résultat une mutation de la région A ou de la sous-région A1 qui est moins active ou pratiquement inactive comme déterminé par un test de l'activité d'ADP-ribosyltransférase.

8. Vaccin anti-choléra amélioré comprenant une quantité efficace d'un analogue de la région A ou de la sous-région Al de la toxine du choléra, ledit analogue comprenant une mutation spécifique d'un site dans un ou plusieurs des sites de ladite région A ou sous-région A1 choisis parmi l'arginine-7, l'arginine-11, l'acide aspartique-9, l'histidine-44, l'histidine-70 et l'acide gultamique-112, ou une troncature de la portion terminale carboxyle commençant au tryptophane-179, dans lequel ladite toxine a une activité biologique qui (a) peut favoriser une réponse immunitaire neutralisant la toxine du choléra et (b) a une activité catalytique réduite ou pratiquement inexistante, associée à la réactogénicité de la toxine du choléra, telle que déterminée par le test de l'activité d'ADP-ribosyltransférase.

9. Vaccin amélioré selon la revendication 8, dans lequel la réponse immunitaire neutralisant la toxine procure une immunoprotection contre l'affection cholérique.

10. Vaccin amélioré selon la revendication 8, dans lequel l'analogue a été dérivé par mutagénèse spécifique d'un site ayant pour résultat une mutation de la région A ou de la sous-région A1 de la toxine du choléra qui a moins ou pratiquement pas d'activité d'ADP-ribosyltransférase.

11. Vaccin amélioré selon la revendication 8, dans lequel l'analogue de la région A ou de la sous-région A1 est associé à l'oligomère B.

12. Vaccin amélioré selon la revendication 11, dans lequel l'oligomère B est la forme naissante.

13. Vaccin amélioré selon la revendication 11, dans lequel l'oligomère B a été traité par génie génétique.

14. Cellule procaryote ou eucaryote transformée avec une molécule d'ADN selon la revendication 1, qui est capable d'exprimer le ou les produits polypeptidiques codés par ladite molécule d'ADN.

15. Cellule hôte d'E. coli selon la revendication 14.

16. Cellule hôte de Vibrio cholerae selon la revendication 14.

Drawing