[0001] This invention relates to a biospecific multiparameter assay method. Immunoassays
are a well-established group of biospecific assays and now widely used in routine
diagnostics and research laboratories. Another group of biospecific assays, is DNA
hybridization assays. Biospecific assays generally employ one or several biospecific
reactants (e.g. antibody, DNA probe) and normally one of these reactants is labelled.
The labels currently used are radioisotopic, enzymatic, luminescent and fluorescent
labels.
[0002] In routine diagnostics there is a growing need for multiparameter (multianalyte)
analysis. Unfortunately, the current methodology does not allow the use of more than
two or three simultaneous labels because the spectrometric signals from different
labels can not be sufficiently separated. The emission spectra of different radioisotopic
labels and photoluminescent labels overlap significantly and as a consequence they
provide inadequate separation of different analytes over a required concentration
range.
[0003] The purpose of this invention is to present a better method for multiparameter biospecific
assays. The method according to this invention is based on methods that are generally
known within the field of immunology and DNA hybridization. Normally, they are performed
as follows. The method uses two biospecific probes that recognize the analyte molecule
k. In this text, these probes are referred to as the primary probe Ab(k,1) and the
secondary probe Ab(k,2). When the secondary probe is labeled, for example, with a
photoluminescent label F, it is denoted with the symbol Ab
F (k,2). In the reaction solution, there is an excess of primary and secondary probes
compared to the number of analyte molecules M
k. When the analyte molecule, which is either a polypeptide or a macromolecule, has
separate epitopes i.e. molecule structures that bind specifically to the probes, they
form together a complex Ab(k,1) + M
k + Ab
F(k,2). In principle, the amount of complex formed is directly proportional to the
amount of the analyte, and the excess of primary and secondary probes remain in the
solution. The complexes are separated from the free probes using a commonly known
technique, for example, in which the primary probe is bound to a solid carrier and
the free probes are washed away from the sample. Finally, the signal of bound label
F in the complexes is measured in a traditional way which depends on the label chosen.
The intensity of the signal obtained is directly proportional to the amount of label
in the solution, and the response of the system is linear.
[0004] If the analyte to be measured is a small molecule without two or more epitopes which
specifically bind to the probes, one can use a secondary probe that reacts specifically
with the complex formed by the analyte and the primary probe (C.H. Self & al., Clin
Chem 40 (1994) 2035-2041).
Background of the invention
[0005] Certain multiparameter biospecific assay methods have been introduced earlier. It
has been common practice to use multiple labels to label biospecific reagents and
to perform the separation of the signals on the basis of their different emission
spectra. In most cases, however, the known multiparameter methods are based on the
use of a solid support where the biospecific reagents can be immobilised at separate
and optically distinguishable areas, or that are based on the use of artificial microparticles
as a solid support. Some of the methods are reviewed below:
1. A method, in which various biospecific probes are attached to a matrix, which is
formed by small areas on a planar solid support, is described in the patent PCT WO
84/01031. In this method, after the reaction and the wash, the signals from the photoluminescent
labels in each area are measured separately, for example, using a laser scanning microscope.
2. A method, in which the identification of the analyte category is based on the colour
of the microparticles, which are used as a solid support and which is achieved by
optically measuring the light absorption of the particle to be analysed (J.G. Streefkerk
& al., Protides Biol. Fluids 24 (1976) 811-814 and US patent 5,162,863).
3. A method, in which the identification of the analyte category is performed by optically
measuring the absorption of the dye inside the particle, the refractive index or the
size of the particle to be analysed (US patent 5,162,863).
4. A method, in which the identification of the analyte category is based on the use
of different particle sizes and in which the identification is performed by optically
measuring the diameter of the particle to be analysed (T.M. McHugh & al., Journal
of Immunological Methods 95 (1986) 57-61).
5. A method, in which the microparticles are identified by means of fluorescent dyes
that are mixed or impregnated within the particles, and the biospecific signal is
measured from the fluorescence intensity of another fluorescent dye, such as FITC
(EP 126450, GOIN 33/58).
6. A method, in which a dye emitting short decay time fluorescence (decay time a few
nanoseconds), is used for the identification of microparticles, and a dye emitting
long decay time fluorescence (decay time from 10 microseconds to 2 milliseconds),
is used for measuring the analyte concentrations, and in which a time resolved fluorometer
is used for the discrimination of the short and long life time fluorescence (US patent
5, 028, 545).
7. A method, in which a dye emitting short decay time fluorescence (decay time a few
nanoseconds), is used for the identification of the microparticles, and a molecule
which generates chemiluminescence or bioluminescence (decay time several seconds),
is used to measure the analyte concentrations, and in which the fluorescence and luminescent
signal can effectively be separated from the fluorescence because they are excited
and they emit light at different times (FI-patent 89837).
8. A method, in which a dye emitting short decay time fluorescence (decay time a few
nanoseconds), is used for the identification of the microparticles and a dye emitting
phosphorescence, (decay time from 10 microseconds to 2 milliseconds), is used to measure
the analyte concentrations, and in which a time resolved fluorometer is used for the
discrimination between the short decay time fluorescence and the long decay time phosphorescence
(FI-patent 90695).
9. A method, in which dyes emitting long decay time fluorescence, such as fluorescent
chelates of lanthanide ions Tb, Dy, Eu and Sm, are used for the identification of
the microparticles and for measurement of the biospecific signal (FI-patent application
931198).
10. A method for automated multiparameter bioaffinity assays. The method uses a mixture
of prefabricated microparticles distributed in different categories and representing
different analytes. The microparticles representing different categories contain different
amounts of a fluorescent dye and are coated with biospecific reactants binding different
analytes. The sample to be analysed is added and a mixture of biospecific secondary
reactants labelled with a molecule generating or catalyzing luminescence or with a
fluorescent or phosphorescent molecule is added to the said mixture. The fluorescent
dye is activated, and the category of the microparticle is identified by means of
the strength of the fluorescent emission. The biospecific binding reaction is measured
by means of the signal from the molecule generating or catalysing luminescence or
the signal from the fluorescent or phosphorescent molecule. According to the invention,
the identification of the microparticle category and the measurement of the biospecific
binding reaction, and possibly also dispensing, mixing, incubation and separation
of the free fraction are carried out within a system of microchannels (WO-A-9411735).
[0006] A common problem in many multiparameter assays mentioned above is that the signal
of photoluminescent label, which indicates the analyte category, and the signal from
the photoluminescent label, which measures the concentration of the biospecific probe,
interfere with each other. This is a problem that significantly restricts the dynamic
range of the measurement of the analyte concentration. This interference may become
particularly significant when measuring low analyte concentrations and when a wide
dynamic range is required for the measurement of the biospecific signal. In methods
6, 7, and 8 referred to above, interference is eliminated by choosing such photoluminescent
labels for the measurement of the biospecific reaction and identification labels which
have substantially different emission decay times. In methods 1, 2, 3 and 4 the analyte
is identified using an alternative method rather than using a photoluminescent label.
In methods 5 and 9, the identification method of the analyte essentially restricts
the dynamic range of the measurement.
[0007] Another problem associated with methods 6,7,8 and 9 mentioned above is the long measurement
time, caused by the long decay time (T½ = 1 millisecond) of the fluorescent and phosphorescent
labels. This problem is caused by the saturation of the excited states of the labels,
which restricts the intensity of the exciting light to such a low level that a measurement
time of up to one second is needed for each microparticle. Likewise, the measurement
of the signals from labels that are based on chemiluminescence, bioluminescence and
electroluminescence, also take at least one second.
Object of the invention
[0008] The object of this invention is an improved method for biospecific multiparameter
assay method based on the use of small microparticles with a diameter range from 100
nanometer to 10 micrometer, but not limited to these measures. The microparticles
are used as solid support for different bioaffinity reagents in reaction solution
to which the sample is added. This invention allows the use of microparticles with
very moderate monodispersity. The method of this invention allows the use of conventional
short decay time fluorescent labels for labelling the biospecific reactants. Despite
the fluorescent background, which is normally associated with such fluorescent labels,
the optical measurement method of this invention ensures an ultimate sensitivity which
potentially can be one molecule per microparticle.
[0009] The following terms are used systematically later in the text: The term "indicator"
is used in the context of a substance used for identification of the microparticles.
The term "dye" will be used if the indicator is a fluorescent dye. The term "label"
will be used in the context of labelling of the biospecific reactant with a photoluminescent
label F, which is a fluorescent dye with short decay time.
[0010] In particular, this invention relates to the method of sensitive detection of the
signal from the label F and identification of the category of microparticles using
indicator D
k.
Brief description of the figures
[0011] Figure 1 is a functional diagram of the measuring system needed for the method of
this invention.
[0012] Figures 2a - 2j show the excitation and emission spectra of the tetrapyrrolic compounds,
which can be used as indicator D
k.
[0013] Figures 3a and 3b show the excitation and emission spectra of selected tetrapyrrolic
compounds, which can be used as indicator D
k.
[0014] Figure 4 presents an example of signals derived from the detector.
[0015] Figure 5 shows the single photon count rate as a function of the number of molecules
in the detector focal volume.
[0016] Figure 6 shows a functional diagram of an alternative measuring system
[0017] Figure 7 shows a functional diagram of an alternative measuring system
Detailed description of the invention
[0018] In the method of this invention, the microparticles are in different categories representing
different analytes to be assayed, said categories comprising different amounts of
one or several indicators D
1, D
2, D
3, ... D
k (later D
k), for the purpose of identification of the category of said microparticles. Each
category of microparticles is coated with a different biospecific reactant Ab(k,1),
which reacts with the particular analyte M
k and with a secondary reagent Ab
F(k,2) and which is labelled with a photoluminescent label F. Complexes Ab(k,1) + M
k + Ab
F(k,2) are formed in the reaction on the surface of the microparticles belonging to
category k and the signal from the label F is then measured and used for determination
of the concentration of each analyte M
k in the reaction solution.
[0019] Said method is comprised of steps of
- pooling the different categories of microparticles coated with the primary reagent
Ab(k,1) together in a suspension and adding the sample M containing analytes M1, M2, .... Mk to be assayed into the suspension,
- adding a mixture of labelled biospecific secondary reactants AbF(k,2) into the suspension to initiate biospecific reactions between the analytes Mk and the labelled reactants and microparticle-associated reactants Ab(k,1),
- diluting the suspension to reduce the concentration of labelled reactants not bound
to the microparticles,
- sampling the suspension in order to expose one microparticle at a time to a laser
beam and exciting the indicators Dk and the photoluminescent label F associated with the microparticle,
- converting the signal obtained from the excited indicators Dk and from the label F to electrical signals,
- identifying the category of each microparticle on the basis of the electrical signal
resulting from the indicator Dk,
- determining the concentration of the analyte Mk on each microparticle on the basis of the electrical signal resulting from the photon
emissions generated by the label F.
[0020] A sufficient number of microparticles is analysed and the result of each microparticle
is registered in a computer.
[0021] The suspension is diluted adequately after the reaction. Often a dilution of one
order of magnitude may be enough for sufficient separation of the bound and free fraction,
because the photometric detector used in this invention is able to discriminate optically
between those signals originating from the microparticle within the optical focal
volume and the signal from the free label in the surrounding buffer solution.
[0022] The photoluminescent label F in the method of this invention, is a short decay fluorescent
compound and the sample is illuminated by a continuous or pulsed laser beam which
excites the fluorescence emissions. The fluorescent label, with a typical emission
decay time of a few nanoseconds, allows one to use an intensity of the exciting light
up to 10
6 times higher than that of the excitation intensity of the long decay time fluorescent
labels in the method referred to above. A much stronger signal with a short decay
time can be derived from labels and, correspondingly, the signal can be measured precisely
in much shorter time. Since the time needed for detecting one microparticle is very
short, for example, 100 microseconds, the method of this invention has the advantage
that a large number of microparticles can be measured within a short time. This results
in higher capacity, accuracy and precision.
[0023] The background signal, which seriously reduces the sensitivity of ordinary fluorometry,
is eliminated in this invention by using confocal excitation and detection or alternatively,
by using two-photon excitation. Both of these methods restrict the active volume of
measurement to a diffraction limited volume which approximately corresponds to the
volume of one microparticle. Both of these methods and the related optical systems
discriminate very efficiently all background scattering and fluorescence which originate
from outside the active diffraction limited sample volume.
[0024] It is essential for the sensitivity of the method of this invention, as well as for
the sensitivity of the other multiparameter assays previously known and referred to
above, that the signal from the indicator used for the identification of the analyte,
does not interfere with the signal from the photoluminescent label used for the measurement
of the biospecific reaction. In this invention, this interference has been eliminated
by using identification with non-fluorescent indicators or alternatively, when using
a fluorescent indicator, the interference is eliminated with the use of the two-photon
excitation method.
Realisation of the invention with the confocal principle
[0025] The confocal principle applied to this invention is described in following with the
reference to Fig.1, which shows an example of the functional diagram of the measuring
system needed for the method of this invention. The laser (1) is used for excitation
of fluorescence and it is focused through a lens (2a) and an objective lens (2b) to
the sample (3) in a capillary cuvette (4). The fluorescence signal from the sample
is directed by a dichroic mirror (5) to a pinhole (6). The light beam from the pinhole
(6) is spit by dichroic mirrors (7) and (8) passes to the detectors (9), (10) and
(11), which are tuned for the wavelengths of label F and indicators D
1 and D
2 respectively. For simplicity, the functional diagram presented now is applied to
the registration of only two spectral features of the indicators D
k requiring two detectors (10) and (11), respectively. The detectors incorporate appropriate
spectral filters. The detectors (9), (10) and (11) are connected to a signal processor
(12). The signal processor converts the signals to numerical form and the results
are processed in the computer (13), which also controls the hardware. The label F
and the indicator D
k can also be excited with different lasers, if their excitation wavelengths are different,
or if better results can be achieved by using two lasers. In this case, both lasers
are focused to the same or adjacent points of the moving sample.
[0026] The principle of the confocal set-up is described below with reference to Fig.1.
Firstly, imaging of a point-like light source (1) to the focal plane (3) of the objective
lens (2b) is described. Due to diffraction, a point-like source of light forms an
intensity distribution, which is characteristic to the optical system, in the focal
plane. The intensity distribution is called the point spread function, which is determined
in three dimensions. A normalised point spread function defines the probability S1
of how photons, radiated from a point-like source, are distributed on the focal area
(3); that is, the probability that the photons are absorbed to different parts of
the sample volume.
[0027] A corresponding point spread function S2 can also be determined for the spatial distribution
of the photons emitted from the focal point that reach the pinhole in front of the
detectors. The value of this normalised function in the vicinity of the focal point
defines the probability of the photons emitted from different points and hitting the
pinhole (6).
[0028] In the confocal optical system that has been applied to the method and the device
of this invention, the light source (1) and the pinhole (6) are focused to the same
focal point (3). The probability that a photon radiated from a point-like light source
(1) causes a fluorescence emission in the sample, and that the emitted photon hits
the pinhole (6), is described by the normalised product S1*S2 of the illumination
and detection intensity distributions. The probability distribution thus derived,
is three dimensional and is clearly more restricted than the one produced by conventional
optics, especially in the axial direction. The fluid volume to be measured in a confocal
system is considerably smaller than the one in a conventional optical system. When
using an objective lens with a large numerical aperture (N.A. > 0.5) and a confocal
system, the active fluid volume is reduced to under a tenth of what is required in
a conventional optical system. The dimension of the fluid volume under observation,
is clearly larger axially than laterally, and it is inversely proportional to the
square of the numerical aperture (N.A.).
Realisation of the invention with two-photon excitation
[0029] An alternative labelling and detection method that allows the use of fluorescent
dyes as the identification indicator D
k and offers a good separation between the signals from D
k and F, is based on two-photon excitation of the label F.
[0030] Normally, the fluorescent labels are single-photon excited, which means that the
chromophores of the fluorescent label absorb light at the wavelength of the exciting
light beam. Two-photon excitation can replace single-photon excitation and reduce
the background caused by scattering and autofluorescence and it also very efficiently
eliminates the spectral interference between D
k and F. Two-photon excitation is possible when, by focusing an intensive light source,
the density of photons per unit volume and per unit time becomes high enough for two
photons to be absorbed into the same chromophore. In this case, the absorbed energy
is the sum of the energies of the two photons. Already in the 1930's, two-photon excitation
of fluorescent materials was theoretically known, and from the 1960's on it has been
applied in the fields of spectroscopy and microscopy (U.S. Pat. 5.034.613). According
to the concepts of probability, the absorption of a single photon by a chromophore,
is an independent event, and the absorption of several photons is a series of single,
independent events. The probability of absorption of a single photon can be described
as a linear function as long as the energy states that are to be excited are not saturated.
The absorption of two photons is a non-linear process of the second kind. In two-photon
excitation, the chromophore is excited only when both photons are absorbed simultaneously,
which is approximately within a femtosecond. The probability of absorption of two
photons is equal to the product of probability distributions of absorption of the
single photons. The intensity of fluorescence emission, caused by two photons, is
thus a quadratic process with respect to the photon density of illumination.
[0031] The properties of this invention's optical system have been described above with
respect to the response of the system to a point-like light source. A point-like light
source forms, due to diffraction, an intensity distribution in the focal plane characteristic
of the optical system (point spread function). When normalised, this point spread
function is the probability distribution for the photons from the light source to
reach the focal area. In two-photon excitation, the probability distribution of excitation
equals the normalised product of the intensity distributions of the two photons. The
probability distribution thus derived is 3-dimensional, and is clearly more restricted
than that for single-photon excitation, especially in the vertical direction. Thus
in two-photon excitation, only the fluorescence that is formed in the clearly restricted
3-dimensional vicinity of the focal point is excited.
[0032] When a chromophore is two-photon excited and the excitation is restricted to the
3-dimensional vicinity of the focal point, then the signal caused by scattering in
the vicinity of the focal point and from the optical components, is reduced remarkably
if compared to normal excitation. Furthermore, two-photon excitation decreases the
background fluorescence outside the focal point, in the surroundings of the sample
and in the optics. Since the exciting light beam must be focused onto as small a point
as possible, two-photon excitation best suits the observation of small sample volumes
and structures, which is also the situation in the method according to this invention.
[0033] The previously mentioned advantages of two-photon excitation are based on the fact
that visible or near-infrared (NIR) light can be used for excitation in the ultraviolet
or blue region. Similarly, excitation in the visible region can be achieved by NIR
light. Because the wavelength of the light source is considerably longer than the
emission wavelength of the chromophore, the scattering at a wavelength of the light
source and the possible autofluorescence can be effectively attenuated by using low-pass
filters (attenuation of at least 10 orders of magnitude) to prevent them from reaching
the detector.
[0034] The common way to produce two-photon excitation is to use ultra-short laser pulses.
During the short pulse, it is possible to achieve a sufficiently high energy density
for two-photon excitation, but the average energy is kept low. It has been observed,
though, that two-photon excitations can also be observed with continuous-wave laser
illumination.
[0035] In our experiments, we have observed that a very high signal-to-background-ratio
and good sensitivity can be reached with two-photon excitation and short-lived fluorescent
labels. Suitable fluorescent labels for two-photon excitation are, for example, coumarin,
rhodamine derivatives and phycobiliproteins.
[0036] In using the method of two-photon excitation, the coincidence condition of the laser
pulse and the pulse from the photon detector can also be used to eliminate thermal
noise from the photon detector. In this case, thermal noise becomes insignificant.
The use of two photon excitation is advantageous compared to any single-photon excitation
method because scattering and background noise, especially that caused by proteins
and other macromolecules in the sample, is considerably lower. No fluorescence arises
at the wavelength of the laser, nor can scattering caused by the laser beam reach
the detector, because low-pass filters effectively block wavelengths lower than that
of the laser.
[0037] Two-photon excitation can best be performed with pulse lasers. The short transit
time requires a pulsed laser with very high repetition frequency. Today, the laser
suitable for this application is the titanium-sapphire femtosecond laser with pulse
energy of 10 nJ and with pulse frequency of 76 MHz and with adjustable 700-900 nm
wavelength. Less expensive pulsed lasers suitable for this application will likely
be available in the near future. An example of this kind of development is the mode-locked
300 MHz pulsed diode laser (Laser Ionics Inc., Orlando, Florida, USA), lambda = 825
nm, pulse energy 0,03 nJ, pulse width 1-20 ps. Another example is a new, not yet commercially
available diode pumped CrLi-Sapphire laser with 80 MHz pulse rate, 30 fs pulse width,
0.5 nJ pulse energy and adjustable 820-900 nm wavelength.
[0038] Two-photon excitation can provide a diffraction-limited focal volume which is slightly
larger than that of the confocal set-up, but clearly defined in three dimensions.
The lower resolution is simply a consequence of using a longer excitation wavelength
for two-photon excitation. However, the optical system for two-photon excitation can
also be combined with a confocal set-up. By choosing an appropriate detector pinhole
it is possible to optimise the size of the focal volume.
Identification of the microparticles with Raman indicators
[0039] The use of Raman indicators is an alternative method for identification of the microparticle
category. This method is well suited both for the confocal and two-photon excitation
concept.
[0040] Raman scattering is inelastic light scattering from molecular structures where the
energy due to molecular vibrations is mixed with the Raman scattering due to light
excitation. The Raman spectrum is expressed as a wavelength shift on both sides of
the wavelength of the incident light, and called the Stokes shift and the anti-Stokes
shift. A Raman spectrum includes information from the molecular structure similar
to that from an infrared (IR) spectrum. Raman spectrum can also be obtained from very
small objects like microparticles (P. Dhamelincourt & al. Spectroscopy Europe 5/2(1993)
16-26). Therefore, Raman spectra can be used to identify and to distinguish different
molecular structures of microparticles.
[0041] Microparticles for different categories can be produced with known polymerisation
methods employing chemically different monomer mixtures for different particle categories.
The monomer mixtures can include different kinds of monomers in different quantities
or indicator substances can be added to the monomer. Examples of different monomers
suitable for polymerisation and having significantly different Raman spectra are styrene,
deutered styrene (=styrene-D6), methylmetacrylate and acrylnitril. Examples of additional
indicators are oligomers or polymers of above mentioned monomers or aliphatic or aromatic
halogen compounds.
[0042] Microparticles with a diameter ranging from 100 nanometers to 10 micrometers can
be produced from different materials or material composites. The microparticle indicator
substances can be added to production batches of different categories of microparticles
and in different combinations. Thus the Raman signals from different indicators express
the category to which the microparticle belongs. For example, when using styrene as
main component of the monomer mixture for particle synthesis and when using the other
three monomers mentioned above, as indicators, it is possible to produce microparticles
in 2
3 = 8 different categories. The Raman spectra obtained from microparticles of these
different categories can be recognised by comparing the spectra using the correlation
method described e.g. in US-patent 5,313,406 or by comparing the intensities of certain
individual spectral peaks.
Identification of microparticles with fluorescent indicators
[0043] The use of fluorescent dyes is an alternative method for identification of a microparticle's
category. This method is well suited only for the two-photon excitation concept because
spectral overlap may cause significant interference in the confocal concept.
[0044] Fluorescent microparticles with a diameter ranging from 100 nanometers to 10 micrometers
can be manufactured combining the polymer material with a suitable short decay time
fluorescent dye. Well known fluorescent dyes with very short decay time, for example
POPOP, bisMSB, fluorescein or rhodamine etc., can be added to any monomer (as discussed
e.g. in "Theory and Practice of Scintillation Counting", Ed. J.B. Birks, Pergamon
Press, 1967, pp. 321-353) and solid fluorescent material is formed in polymerisation.
The material can be processed into microparticles in the same step. The fluorescent
dyes can alternatively be impregnated into the surface of the microparticles or coupled
on the surface of the microparticles. The fluorescent dye can be added into different
batches of the monomer in substantially different concentrations differing e.g. by
a factor of two from each other.
[0045] Irrespective of the choice of the label F and excitation method, several compounds
with short fluorescence decay time can be used as an identification dye D
k. It is clear that the measuring device needed in this method can be simplified, if
the excitation wavelength for all of the chromophores, F and D
k, is the same, and the emission wavelengths differ substantially from each other,
so that they can easily be separated spectrally. It is important that the fluorescent
dye chosen has an absorption band that does not overlap with the emission band of
the photoluminescent label F. The measuring device is simplified, if the chromophores
F and D
k can both be excited with the same light source.
[0046] In case of two-photon excitation, for example, each of the chromophores, F and D
k, can be two-photon excited, or alternatively, F is two-photon excited and the fluorescent
dyes of the NIR region are used as chromophores D
k and they are one-photon excited by the fundamental wavelength of the same laser.
However, if chromophores similar to the ones described above are not used, it is necessary
to excite them with two separate lasers, which are focused to the same or adjacent
points of the moving sample. The excitation of the points, and the emission that follos
it, are separated in the time domain.
[0047] The potential fluorescent chromophores D
k should show the following properties. In the method according to this invention:
1) They must have a common fluorescence excitation wavelength, which lies, if possible,
on the excitation range of the bioaffinity label F, or at the fundamental wavelength
of the laser that is used for the two-photon excitation of F; 2) they must have spectrally
separable fluorescence emission bands that are higher than that of F; 3) the decay
time of their fluorescence excited states must be short, and lie in the nanosecond
range; in addition it is advantageous for a good function of this invention if 4)
they have a large difference between their excitation and emission wavelengths; 5)
they have no significant long decay emission component; 6) they are chemically stable
and attachable to the microparticles; and 7) it would be very useful if their susceptibility
to two-photon excitation is lower than that of F.
[0048] The following commercially available and widely used dyes meet these specifications:
Hoechst 33258, rhodamine (TRITC), Texas Red and Quantum Red. Although the excitation
maxima of these dyes lie at different wavelengths, they can still be reasonably well
excited at a single wavelength in the 300 to 450 nm range. The emission maxima lie
at wavelengths of 470, 570, 620 and 670 nm, respectively.
[0049] A group of compounds suitable for dyes D
k can be found among the following group of tetrapyrrols: porphyrins, chlorines, bacteriochlorines,
purpurines, pheophorbides, phtalocyanines and naphtalocyanines. These compounds generally
have overlapping absorption bands at a near-UV range (320 nm - 450 nm, the so called
"Sores band") but also from the visible to the NIR-range and narrow separate fluorescence
emission bands at the red and NIR-range (600 nm - 1200 nm). These compounds can be
produced synthetically or microbiologically (Porphyrins, D. Dolphin, Ed., Elsevier,
Amsterdam-N.-Y.-London, 1980, V. 1-3) and they have been used in various analytical
applications (D.B. Papkovsky, Appl. Fluor. Technology 3 (1991) 16-23; EP 0127797;
EP 0071991; Russian patent SU 1,659,477). Examples of tetrapyrrolic dyes are:
1) deuteroporphyrine IX, 2) mesoporphyrine IX, 3) proto-porphyrine (IX) dimethyl ester,
4) octaethylporphin, 5) tetraphenylporphin, 6) tetra-(2-metoxy)-phenyl-porphin, 7)
chlorine of coproporphyrin dimethyl ester, 8) bacteriochlorine of coproporphyrin dimethyl
ester, 9) aluminium phtalocyanine and 10) zinc phtalocyanine.
[0050] Another group of compounds suitable for dyes "D" can be found among the cyanine dyes.
Examples of such cyanine dyes are:
3.3'-diethylthiatricarbocyanine perchlorate,
1.1'-diethyl-2.2'-dicarbocyanine iodide,
3.3'-diethyloxadicarbocyanine iodide,
3.3'-diethyloxatricarbocyanine iodide,
3.3'-diethylthiadicarbocyanine iodide,
3.3'-diethylthiatricarbocyanine iodide.

[0051] Additional examples are commercial laser dyes such as IR-125, IR-132, IR-140 and
IR-144 (Eastman Laboratory Chemicals, Catalog No. 55, Edition 93-94)
[0052] The excitation (exc) and emission (em) wavelengths of the tetrapyrrolic and cyanines
dyes listed above are presented in Table 1. The excitation and emission spectra of
the compounds 1-10 are shown in Fig. 2a-2j. It can be seen that the spectra fulfil
the requirements 1-4. Regarding requirement 6, we have found that tetrapyrrolic dyes
show very low susceptibility to two-photon excitation. Phycoerythrin, for example,
shows very high susceptibility to two photon excitation. Because of this feature,
tetrapyrrol dyes and phycoerythrin are a very good combination as D
k and F.
[0053] These tetrapyrrolic and cyanine dyes can be supplemented with other known organic
fluorescent dyes having the same excitation wavelength and showing an emission band
either within the lower or the higher side of the emission range of tetrapyrrolic
or cyanine dyes. An example of this kind of compound is coumarin 120 in Table 1.
[0054] It can be seen from the excitation and emission spectra of the tetrapyrrolic compounds
1-10 presented in Fig. 2a - 2j that it is easy to find at least three different compounds
with separate emission spectra. As an example we show in Fig. 3b emission spectra
for three compounds 1, 6 and 10, their emission wavelengths being 623 nm, 656 nm and
689 nm, respectively. These compounds are shown together with the emission spectrum
of coumarin. The spectrum for each compound can be measured over a minimum of one
order of magnitude dynamic range without any significant interference by the other
compounds when the concentrations of the other compounds vary to same degree. The
excitation spectra of these same compounds are presented in Fig.3a. All compound can
be excited in the wave length range of 350-400 nm. The compounds were in a solid matrix
(Merckoglas). In Fig. 3b the excitation spectrum (solid line) and the emission spectrum
(dotted line) are shown.
[0055] Microparticles having fluorescent dyes like tetrapyrrolic or cyanine dyes, either
internally or on their surface, can be produced by different known methods. The dyes
can be attached to the particle surface covalently if the particles are provided with
chemically active groups (Molday, R.S. et al., J.Cell.Biol.,64(1975)75-88). The dye
can also be impregnated within the surface layer of the microparticles by swelling
the particles first in an organic solvent and the by washing and evaporating the solvent
after impregnation. These methods have been described e.g. in following manufacturer's
publications: Dyeing Large Particles, published by The Dow Chemical Co.,1972 and Uniform
Latex Particles, published by Seragen Diagnostics Inc. Naturally the dyes can be added
to the raw material before polymerisation of the particle.
Signal analysis
[0056] One possible design concept is to use single photon counters as detectors (9) (10)
and (11) in Fig. 1. The signals from these detectors are characteristically single
photon signals, which are transformed to binary digital signals with a duration, for
example, of 10 nanoseconds. Fig.4(A), 4(B) and 4(C) present examples of pulses derived
from the detectors as a function of time. A microparticle remains for a time t
m , referred to as transit time, under the excitation of the laser beam within the
volume defined by the point spread function of the confocal optics. In practice, the
transit time depends on the speed of the flow inside the cuvette (3, Fig. 1), and
is typically 100 microseconds. The intensity of the laser beam, used for excitation
of label F, can be set so high at the focal point (3) that it can nearly saturate
the excited states. If the decay time of the fluorescent labels F is only about 1
nanosecond, the particles can be excited and relaxed up to 10
5 times within the time interval of t
m = 100 microseconds under the influence of a powerful laser beam. The number of photons
observed by the detector, depends on the quantum efficiency of the label F, the collection
efficiency and the losses due to the optics and the quantum efficiency of the photon
detector (9). In practice, a detection efficiency of 10
-2 can be obtained using avalanche photon diode counters with 80% quantum efficiency
(EG&G Optoelectronics, Canada, type SPCM-141-AQ). Within the transit time t
m, the detector (9) can detect one or many photons from the fluorescence emission which
come from one microparticle flowing through the active volume. The photons appear
as stochastic photon bursts within the transit time t
m (section 1, Fig.4). In addition to these bursts, many other stochastic signals may
also be detected (section 2, Fig.4). They originate from the background fluorescence,
from free molecules in the sample and from scattering and thermal noise.
[0057] An alternative photon detector is a photomultiplier tube and in particular a hybrid
photomultiplier tube, which is composed of a single stage electron multiplier and
a silicon diode as the electron sensor. This photomultiplier tube is capable of producing
an analogue pulse which resolves a single photon. The advantage of the photomultiplier
tube is its high dynamic range but the disadvantage is a quantum efficiency one order
of magnitude lower than that of avalanche photo diodes. It is useful to adjust the
laser intensity to the optimal frequency of single photons to be detected during the
photon burst from each kind of sample to be analysed. If the laser intensity is too
high, the rate of photons exceeds the counting speed of the detector and the Poisson
distribution of the counts in the time domain will be distorted and consequently the
discrimination between true signal and noise is not optimal when using auto-correlation
analysis. The excitation power is an adjustable parameter for the optimal photon emission
rate from the samples in each particular application.
[0058] The avalanche diode photon counter may generate spontaneous after-pulsing with the
probability of 10
-3. Avalanche photon counters, as well as photomultiplier tubes, suffer from thermal
noise which appears as stochastic counts. The afterpulsing and the noise can be eliminated
with the following alternative methods. Auto-correlating the signals form avalanche
photon counters with a threshold of 3 counts or higher eliminates the background caused
by after-pulsing, but this is made at the cost of detection efficiency. By dividing
the emission beam into two parts with a 50%/50% beam splitter for two separate photon
counters and using a cross-correlator, it is possible to discriminate the after-pulses
and thermal noise. The increased optical losses can be compensated with increased
laser power.
[0059] The discrimination power between the background counts and the true counts from the
particles can be enhanced further by cross-correlating the signals obtained from detectors
(9), (10) and (11).
[0060] The correlation analysis of the single photon counts can include both auto-correlation
analysis and cross-correlation analysis. The auto-correlation analysis is based on
registration of the time intervals between the photon counts from each detector. Application
of the correlation analysis for two or several independent photon detectors is called
cross-correlation. The emitted photons from the true particles, detected by one or
several detectors during the transit time of the particle, can correlate in the time
domain and within the following correlation parameters: correlation time, correlation
thresholds as a minimum number of counts per detector, coincidence threshold defined
for the condition of coincident counts from independent detectors. These correlation
parameters are adjustable for optimal discrimination of non-specific photon counts.
[0061] The device (12) in Fig. 1 performing the correlation analysis for single photon bursts
can be an electronic logic circuit, which gives an output signal if a pre-set number
of single photon counts from each detector arrives within a pre-set period of time.
The circuit may also perform more complex correlation functions or the circuit may
be replaced by special computing software which is loaded into a dedicated signal
processor or onto a conventional computer.
[0062] Throughout, it has been assumed that, depending on the flow speed, the transit time
of a microparticle is 100 microseconds. Since the microparticles arrive randomly to
the laser beam, and because a combination of two particles or more is not allowed,
the counting frequency of the microparticles can at most be 1000 microparticles/s.
If, for example, 10000 microparticles of each kind are to be counted and if there
are 10 different kinds, then altogether it would take 100 s to measure one sample.
Examples of performance and embodiment of the invention
Example 1
[0063] The set-up shown in Fig. 1 was tested in single-photon excitation confocal fluorescence
mode with a test-sample of Rhodamine-B dissolved in water in a predetermined concentration.
A continuous wave frequency doubled Nd:YAG laser producing 532 nm wavelength was used
as a light source. The illumination light was focused to the sample (3) with a microscope
objective (2b) with numerical aperture of 0.7. The sample (3) was placed in a position
adjustable capillary tube (4) in conjunction with a simple liquid handling system.
The emitted fluorescence light was separated from the illumination light by a dichroic
filter (5) and a pinhole (6), and detected by a photomultiplier tube (9). The limit
of detection was 50 molecules in the focal volume. The sensitivity was limited mainly
by the background fluorescence and scattering from the optical components. The dynamic
range of the confocal measurement was estimated to be about 3-4 orders of magnitude
- the upper end was limited by the maximum concentration of the dye before self-quenching
in the sample becomes significant.
Example 2
[0064] The measurement was performed in two-photon excitation mode with a Q-switched (pulsed)
Nd:YAG laser operating at 1064 nm wavelength and 20 kHz repeat rate. In this test
the photo-detector dark current was a significant source of background noise but a
cross-correlation circuit reduced this background by a factor of 100. The rest of
background was caused by second harmonic generation of 532 nm photons at the focal
point, but this was suppressed using appropriate filters. The limit of detection was
1 molecule in the focal volume without cross-correlation and without second harmonic
suppression filters. In two-photon excitation self-quenching does not play any role.
The dynamic range of this test instrument was 5 orders of magnitude and was estimated
to be better than 8 orders of magnitude with proper filtering and the cross-correlation
system. The results are shown in Fig. 5 which shows the single photon count rate as
a function of number of molecules in the focal volume.
[0065] As it has become clear from these test measurements, it is feasible to detect single
molecules tagged to the microparticles. On a 1 µm microparticle it is possible to
attach 10
6 antibodies. If 10% are active, the the dynamic range of the assay could be 10
5 even when only a single particle is used as a representative for a particular analyte.
[0066] The method and related device is subject to a statistical measurement error which
may be significant if the test result is based on only one microparticle. The imprecision
is caused by the following factors, for example: the microparticles have a limited
monodispersity, the liquid handling system does not provide precise hydrodynamic focusing,
the count rate from one microparticle is very limited at lowest concentrations of
the analyte. For the purpose of improving the statistical precision of the method
it is necessary to measure a large number of microparticles representing different
analytes. As it has been discussed above in this text, averaging the results from
1000 or 10000 microparticles ensures sufficient precision in a reasonable time.
[0067] As described above, identification of the category can be made using fluorescent
indicators D
k. It also important that the signal from these indicators does dot interfere with
the signal obtained from the label F. Spectral filtering does not ensure sufficient
separation of the signals obtained from F and D
k. This is particularly true if the fluorescence emission spectra overlap and the signals
cover a large dynamic intensity range. For reducing these problems we introduce examples
of optical set-ups which ensure sufficient separation.
Example 3
[0068] With reference to Fig. 6, we assume the use of e.g. phycoerythrin as fluorescent
label and a set of tetrapyrrolic dyes as identification indicators D
k. This concept provides very good separation of signals because, according to our
experiments, tetrapyrrolic dyes show very low susceptibility to two-photon excitation.
Phycoerythrin, however, shows very high susceptibility to two photon excitation. Therefore
the idea of this example is to use two photon excitation at 1064 nm for phycoerythrin
and single photon excitation at 532 nm for tetrapyrrolic dyes. In the instrumental
set-up applicable to this example, the fundamental 1064 nm beam from a pulsed Q-switched
Nd:YAG laser (14) is frequency doubled in a crystal (15). The 1064 nm and the frequency
doubled 532 nm wavelength within the same beam is spit in two beams by a dichroic
mirror (16). The 532 nm beam is conducted through a long fibre (17) thus delaying
it by e.g. 500 ns and then combined again with the 1064 nm beam in the dichroic mirror
(18). The light pulses at 1064 nm and 532 nm appear with 500 ns intervals and are
focused to same focal point (22) in the capillary cuvette (23) with lenses (19), (20)
and (21a). The set-up is equipped with an appropriate number of photon detectors.
For simplicity, only two detectors (28) and (29) are shown in Fig. 6. The emission
from the sample is collected by the objective lens (21a) and dichroic mirrors (24)
and (25) and lenses (26a) and (26b) through pinholes (27a) and (27b) to detectors
(28) and (29) which are connected to an appropriate signal analysis system. In this
set-up, the identification signal D
k and the signal F appear at different times, which are separated by the delay time
of 500 ns. The signal analysis is synchronised with the pulse laser and the temporal
separation eliminates any possible interference between F and D
k.
Example 4
[0069] In this example we assume the use of e.g. phycoerythrin as fluorescent label and
a set of cyanine dyes as identification indicators D
k. The idea of this example is to use two photon excitation at 1064 nm for phycoerythrin
and single photon excitation at 630 nm for tetrapyrrolic dyes. Referring to Fig. 7
the instrumental set-up applicable for this example comprises a pulsed Q-switched
Nd:YAG laser (31) with 1064 nm beam used for excitation of phycoerythrin. The system
comprises an other laser, e.g. a pulsed diode laser at 630 nm (32). The beams of these
lasers are combined using a dichroic mirror (33) and then focused to the same focal
point (34) in the capillary cuvette (35) with lenses (36), (37) and (38). The set-up
is equipped with an appropriate number of photon detectors. In Fig. 7 only two detectors
(39) and (40) are shown for simplicity. The emission from the sample is collected
by the objective lens (38), dichroic mirrors (41) and (42) and lenses (43a) and (43b)
through pinholes (44a) and (44b) to detectors (40) and (39) which are connected to
appropriate signal analysis system. In this set-up, the identification signal D
k and the signal F appear at different times because the pulse lasers are activated
at different times respectively. The signal analysis is synchronised with the lasers
and the temporal separation eliminates the possible interference between F and D
k. The long shift between the emission bands of phycoerythrin and cyanine dyes further
enhances the separation.
Example 5
[0070] In this example we assume the use of e.g. phycoerythrin as fluorescent label and
identification indicators D
k based on Raman scattering. The idea of this example is to use two photon excitation
at 1064 nm for phycoerythrin and to detect Raman scattering over the 1100 - 1200 nm
range. Referring to Fig. 6, the instrumental set-up applicable for this example comprises
a pulsed or CW Nd:YAG laser (14) producing a 1064 nm beam. (The components 16, 17
and 18 shown in Fig. 6 are not applicable in this Example). The 1064 nm beam is focused
to the sample (22) in the capillary cuvette (23) with lenses (19), (20) and (21a).
This set-up needs a photon detector (28) for fluorescence emission from label F. The
emission from the sample is collected by the objective lens (21a) and dichroic mirrors
(25) and lens (26a) through the pinhole (27a) to the detector (28) which are connected
to an appropriate signal analysis system. In addition, a detection system for Raman
scattering is needed. Raman detection can take place either by a separate 90° objective
lens (21b) or by the same objective lens (21a) as used for fluorescence. In both cases,
Raman scattering will be focused to a pinhole (27b) or (27c) and detected with an
appropriate Raman detector (29) or (30). Identification of the microparticle category
on the basis of its Raman spectrum can be performed using several alternative and
commonly known detection methods. The spectral features specific for microparticles
in different categories can be registered with several photon detectors with appropriate
spectral filters. Alternatively, registration of the spectrum or its interferogram
(the Fourier transform of the frequency spectrum) can be made using e.g. a conventional
grating spectrometer or an interferometer, which are coupled to an array detector
providing continuous spectrum with adequate resolution. The concentration of the indicators
in the microparticle polymer can be high. The intensity of the Nd-YAG-laser is high
enough to produce a signal in a short time and strong enough for reliable identification.
The identification of the category, i.e. correlation of spectral features, can be
performed very fast and simply using known correlation calculation methods.
Example 7
[0071] With the reference to Fig. 6 we assume the use of e.g. a coumarin derivative as fluorescent
label F and a set of tetrapyrrolic or cyanine dyes as identification indicators D
k. The idea of this example is to use two photon excitation at 820 nm for coumarin
and single photon excitation at 410 nm for tetrapyrrolic dyes. The instrumental set-up
applicable to this example is similar with that used in Example 3, except the laser
which in this example is a diode pumped CrLi-Sapphire laser with 80 MHz pulse rate,
30 fs pulse width, 0.5 nJ pulse energy and adjustable 820-900 nm wavelength. The laser
is connected to a frequency doubling crystal for the 410 nm line and to a fibre delay
line. The high pulse frequency prerequisites lead to shorter delay times and faster
single photon counting. In this set-up, the identification signal D
k and the signal F appear at different times which are separated by the delay time.
The signal analysis is synchronised with the laser pulses and the temporal separation
eliminates any possible interference between F and D
k.
Example 8
[0072] In this example we assume the use of a polymethinecyanine dye, for example BHDMAP
(L.G.Lee & al. Cytometry 21(1995)120-128) as fluorescent label F and a set of tetrapyrrolic
dyes as identification indicators D
k. The idea of this example is to use two separate lasers and single photon excitation.
Referring to Fig. 7, the instrumental set-up applicable for this example comprises
a CW frequency doubled Md:YAG laser (31) with 532 nm beam for D
k and another laser, e.g. a diode laser at 785 nm (32) for excitation of F. Otherwise,
the set-up follows the same principles as in Example 4. The long shift between the
emission bands of phycoerythrin and the cyanine dye enhances the separation.
[0073] A specialist in the field appreciates that the different applications of the said
invention may vary within the scope of the claims to be presented in the following
section. It will be appreciated that the methods of the present invention can be incorporated
in the form of a variety of embodiments, only a few of which are disclosed herein.
It will be apparent to the artisan that other embodiments exist.