FIELD OF THE INVENTION
[0001] The invention is directed to purified and isolated TNF-α converting enzyme, the nucleic
acids encoding such enzyme, processes for production of recombinant TNF-a convertases,
pharmaceutical compositions containing such enzymes, and their use in various assays
and therapies.
BACKGROUND OF THE INVENTION
[0002] Tumor necrosis factor-α (TNF-α, also known as cachectin) is a mammalian protein capable
of inducing a variety of effects on numerous cell types. TNF-α was initially characterized
by its ability to cause lysis of tumor cells and is produced by activated cells such
as mononuclear phagocytes, T-cells, B-cells, mast cells and NK cells. There are two
forms of TNF-α, a type II membrane protein of relative molecular mass 26,000 (26 kD)
and a soluble 17 kD form generated from the cell-bound protein by proteolytic cleavage.
TNF-α is a principal mediator of the host response to gram-negative bacteria. Lipopolysaccharide
(LPS, also called endotoxin), derived from the cell wall of gram-negative bacteria,
is a potent stimulator of TNF-α synthesis. Because the deleterious effects which can
result from an over-production or an unregulated-production of TNF-α are extremely
serious, considerable efforts have been made to control or regulate the serum level
of TNF-α. An important part in the effort to effectively control serum TNF-α levels
is the understanding of the mechanism of TNF-α biosynthesis.
[0003] The mechanism by which TNF-α is secreted has not previously been elucidated. Kriegler
et al.
Cell, 53:45 (1988) conjectured that TNF-α "secretion" is due to the converting of the 26 kD
membrane-bound molecule by a then unknown proteolytic enzyme or protease. Scuderi
et. al.,
J. Immunology, 143:168 (1989), suggested that the release of TNF-α from human leukocyte cells is dependent
on one or more serine proteases, e.g., a leukocyte elastase or trypsin. A serine protease
inhibitor, p-toluenesulfonyl-L-arginine methyl ester, was found to suppress human
leukocyte TNF-α release in a concentration-dependent manner. Scuderi eL al. suggested
that an arginine methyl ester competes for the arginine-binding site in the enzyme's
reactive center and thereby blocks hydrolysis. The lysine and phenylalanine analogs
of the inhibitor reportedly failed to mimic the arginine methyl ester. However, it
was never shown that this compound acted by inhibiting a protease that cleaves the
26 kD TNF. More recently, it has been reported that metalloprotease inhibitors block
the release of TNF from THP-1 cells. See Mohler et al.,
Nature 370:218 (1994); Gearing et al.,
Nature, 370:555 (1994); and McGeehan et al.,
Nature, 370:568 (1994).
[0004] Most, but not all, proteases recognize a specific amino acid sequence. Some proteases
primarily recognize residues located N-terminal of the cleaved bond, some recognize
residues located C-terminal of the cleaved bond, and some proteases recognize residues
on both sides of the cleaved bond. Metalloprotease enzymes utilize a bound metal ion,
generally Zn
2+, to catalyze the hydrolysis of the peptide bond. Metalloproteases are implicated
in joint destruction (the matrix metalloproteases), blood pressure regulation (angiotensin
converting enzyme), and regulation of peptide-hormone levels (neutral endopeptidase-24.11).
SUMMARY OF THE INVENTION
[0005] The present invention provides biologically active TNF-α converting enzyme ("TACE")
as an isolated and purified polypeptide. In a first aspect, the invention provides
an isolated and purified TACE polypeptide comprising the amino acid sequence of SEQ
ID NO. 9. The polypeptide may comprise a fragment of SEQ ID NO:2 from amino acid 215-477,
or 18-477. The polypeptide may comprise the amino acid sequence of SEQ ID NO:4. Further,
the polypeptide may be selected from the group consisting of a polypeptide comprising
amino acids 18-Xaa of SEQ ID NO:2 wherein Xaa is an amino acid selected from the group
consisting of amino acid 671 through 824.
[0006] Moreover, the polypeptide may comprise an amino acid sequence which is at least 80%
or at least 90% identical to the amino acid sequence of the polypeptide of the first
aspect of the invention.
[0007] Preferably the TACE is capable of converting TNF-α from the 26kD form to the 17kD
form. Typically, the TACE has a molecular weight of about 80kD. Further, the TACE
may be recombinant.
[0008] In a second aspect the invention provides isolated and purified antibodies that bind
to a TACE polypeptide according to the first aspect of the invention. Preferably,
the antibodies are monoclonal antibodies.
[0009] In a third aspect the invention provides isolated nucleic acid encoding a TACE polypeptide
according to the first aspect of the invention. The invention further provides a nucleic
acid which hybridises under conditions of moderate stringency to the nucleic acid
of the third aspect of the invention.
[0010] The present invention further provides an isolated nucleic acid selected from the
group consisting of:
a) cDNA comprising nucleotides 52-2472 of SEQ ID NO:1;
b) nucleic acid that is at least 80% identical to the nucleic acid of a) and encodes
a polypeptide that converts TNF-α from the 26kD form to the 17kD form; and
c) nucleic acid which is degenerate as a result of the genetic code to a nucleic acid
as defined in a) or b) and which encodes biologically active TACE.
[0011] In a fourth aspect, the invention provides a method for detecting the TACE-inhibiting
activity of a molecule, comprising mixing said molecule with a substrate and a polypeptide
according to the first aspect of the invention, and determining the extent of substrate
cleavage. The substrate may comprise the amino acid sequence Leu - Ala - Gln - Ala
- Val - Arg - Ser - Ser (SEQ ID NO:5). Further, the substrate may be membrane bound
TNF-α.
[0012] The invention also provides an antibody that inhibits the activity of a TACE polypeptide
according to the first aspect of the invention.
[0013] In a fifth aspect, the invention provides the use of a polypeptide of the first aspect
of the invention, in the manufacture of a medicament for treating tumours, inflammation
or fertility disorders. The TACE polypeptide may be used to modulate or remove a cell
surface cytokine, cytokine receptor or an adhesion protein.
[0014] In addition, the invention is directed to expression vectors comprising the nucleic
acid of the third aspect of the invention. Within the scope of this invention are
host cells that have been transfected or transformed with the expression vectors and
processes for producing TACE by culturing such host cells under conditions conducive
to expression of TACE. By virtue of the purification of TACE, antibodies, and in particular,
monoclonal antibodies against TACE are an aspect of the invention. In addition, assays
utilising TACE to screen for potential inhibitors thereof, and methods of using TACE
as a therapeutic agent for the treatment of diseases mediated by cell-bound TNF-α
or other molecules are encompassed by the invention.
[0015] Inhibition of the TACE inhibits release of TNF-α into the serum and other extracellular
spaces. TACE inhibitors would therefore have clinical utility in treating conditions
characterized by over-production or upregulated production of TNF-α. A particularly
useful TACE inhibitor for certain pathological conditions would selectively inhibit
TACE while not affecting TNF-β (also known as lymphotoxin) serum levels. The over-production
or unregulated production of TNF-α has been implicated in certain conditions and diseases,
for example, Systemic Inflammatory Response Syndrome, reperfusion injury, cardiovascular
disease, infections disease such as HIV infection and HIV neuropathy, obstetrical
or gynecological disorders, inflammatory disease/autoimmunity, allergic/atopic diseases,
malignancy, transplants including organ transplant rejection or graft-versus-host
disease, cachexia, congenital, dermatologic, neurologic, renal, toxicity, and metabolic/idiopathic
diseases.
[0016] Inhibitors of TACE would prevent the cleavage of cell-bound TNF-α thereby reducing
the level of TNF-α in serum and tissues. Such inhibitiors would be of significant
clinical utility and could be potential therapeutics for treating the above-listed
TNF-α-related disorders. Isolation and purification of TACE would provide a significant
advancement in the effort to develop inhibitors of such enzyme, and the treatment
of TNF-associated diseases, and indeed, could lead to use of TACE itself as a therapeutic
agent for certain physiological disorders. For example, in addition to TNF-α, other
cytokines as well as cytokine receptors and several adhesion proteins may be released
from the cell surface by TACE of related proteases.
DETAILED DESCRIPTION OF THE INVENTION
[0017] A cDNA encoding human TNF-α converting enzyme ("TACE") has been isolated and is disclosed
in SEQ ID NO:1. This discovery of the cDNA encoding human TACE enables construction
of expression vectors comprising nucleic acid sequences encoding TACE; host cells
transfected or transformed with the expression vectors; biologically active human
TACE as isolated and purified proteins; and antibodies immunoreactive with TACE.
[0018] Isolated and purified TACE polypeptides according to the invention are useful for
detecting the TACE-inhibiting activity of a molecule. In such a method involving routine
and conventional techniques, a molecule of unknown TACE-inhibiting activity is mixed
with a substrate and incubated with a TACE polypeptide. The extent of substrate cleavage
then can be determined chromatographically.
[0019] In addition, TACE polypeptides according to the invention are useful for the structure-based
design of a TACE inhibitor. Such a design would comprise the steps of determining
the three-dimensional structure of such TACE polypeptide, analyzing the three-dimensional
structure for the likely binding sites of substrates, synthesizing a molecule that
incorporates a predictive reactive site, and determining the TACE-inhibiting activity
of the molecule.
[0020] Antibodies immunoreactive with TACE, and in particular, monoclonal antibodies against
TACE, are now made available through the invention. Such antibodies may be useful
for inhibiting TACE activity in vivo and for detecting the presence of TACE in a sample.
[0021] As used herein, the term "TACE" refers to a genus of polypeptides that are capable
of converting the 26 kD cell membrane-bound form of TNF-α (that includes an intracellular
region, a membrane region, and an extracellular region), into the soluble 17 kD form
that comprises the C-terminal 156 residues of the TNF-α protein. TACE encompasses
proteins having the amino acid sequence 18 to 824 of SEQ ID NO:2, as well as those
proteins having a high degree of similarity (at least 80%, and more preferably 90%
homology) with the amino acid sequence 18 to 824 of SEQ ID NO:2 and which proteins
are biologically active. In addition, TACE refers to the biologically active gene
products of the nucleotides 52-2472 of SEQ ID NO: 1. Further encompassed by the term
"TACE" are the membrane-bound proteins (which include an intracellular region, a membrane
region, and an extracellular region), and soluble or truncated proteins which comprise
primarily the extracellular portion of the protein, retain biological activity and
are capable of being secreted. Specific examples of such soluble proteins are those
comprising the sequence of amino acids 18-671 of SEQ ID NO:2. Truncated versions are
those having less than the extracellular portion of the protein and comprise, for
example, amino acids 18-477 of SEQ ID NO:2, or that comprise substantially all of
the catalytic domain, i.e., amino acids 215 to 477 of SEQ ID NO:2.
[0022] The isolated and purified TACE according to the invention has a molecular weight
between about 66 kD and about 97 kD as determined by SDS-polyacrylamide gel electrophoresis
(SDS-PAGE). More specifically, TACE was found to have a molecular weight of approximately
80 kD as determined by SDS-PAGE.
[0023] The term "isolated and purified" as used herein, means that TACE is essentially free
of association with other proteins or polypeptides, for example, as a purification
product of recombinant host cell culture or as a purified product from a non-recombinant
source. The term "substantially purified" as used herein, refers to a mixture that
contains TACE and is essentially free of association with other proteins or polypeptides,
but for the presence of known proteins that can be removed using a specific antibody,
and which substantially purified TACE retains biological activity. The term "purified
TACE" refers to either the "isolated and purified" form of TACE or the "substantially
purified" form of TACE, as both are described herein.
[0024] The term "biologically active" as it refers to TACE, means that the TACE is capable
of converting the 26 kD cell form of TNF-α into the 17 kD form.
[0025] A "nucleotide sequence" refers to a polynucleotide molecule in the form of a separate
fragment or as a component of a larger nucleic acid construct, that has been derived
from DNA or RNA isolated at least once in substantially pure form (i.e., free of contaminating
endogenous materials) and in a quantity or concentration enabling identification,
manipulation, and recovery of its component nucleotide sequences by standard biochemical
methods (such as those outlined in Sambrook et al.,
Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboradry, Cold Spring Harbor, NY (1989)). Such sequences
are preferably provided in the form of an open reading frame uninterrupted by internal
non-translated sequences, or introns. that are typically present in eukaryotic genes.
Sequences of non-translated DNA may be present 5' or 3' from an open reading frame,
where the same do not interfere with manipulation or expression of the coding region.
[0026] A "TACE variant" as referred to herein, means a polypeptide substantially homologous
to native TACE, but which has an amino acid sequence different from that of native
TACE (human, murine or other mammalian species) because of one or more deletions,
insertions or substitutions. The variant amino acid sequence preferably is at least
80% identical to a native TACE amino acid sequence, most preferably at least 90% identical.
The percent identity may be determined, for example, by comparing sequence information
using the GAP computer program, version 6.0 described by Devereux et al.
(Nucl. Acids Res. 12:387,1984) and available from the University of Wisconsin Genetics Computer Group
(UWGCG). The GAP program utilizes the alignment method of Needleman and Wunsch (
J. Mol. Biol. 48:443, 1970), as revised by Smith and Waterman (
Adv. Appl. Math 2:482, 1981). The preferred default parameters for the GAP program include: (1) a
unary comparison matrix (containing a value of 1 for identities and 0 for non-identities)
for nucleotides, and the weighted comparison matrix of Gribskov and Burgess,
Nucl. Acids Res. 14:6745, 1985, as described by Schwartz and Dayhoff, eds.,
Atlas of Protein Sequence and Structure, National Biomedical Research Foundation, pp. 353-358, 1979; (2) a penalty of 3.0
for each gap and an additional 0.10 penalty for each symbol in each gap; and (3) no
penalty for end gaps.
[0027] Variants may comprise conservatively substituted sequences, meaning that a given
amino acid residue is replaced by a residue having similar physiochemical characteristics.
Conservative substitutions are well known in the art and include substitution of one
aliphatic residue for another, such as Ile, Val, Leu, or Ala for one another, or substitutions
of one polar residue for another, such as between Lys and Arg; Glu and Asp; or Gln
and Asn. Conventional procedures and methods can be used for making and using such
variants. Other such conservative substitutions, for example, substitutions of entire
regions having similar hydrophobicity characteristics, are well known and routinely
performed. Naturally occurring TACE variants are also encompassed by the invention.
Examples of such variants are proteins that result from alternate mRNA splicing events
or from proteolytic cleavage of the TACE protein, wherein the TACE proteolytic properry
is retained. Alternate splicing, of mRNA may yield a truncated but biologically. active
TACE protein. such as a naturally occurring soluble form of the protein, for example,
as shown in SEQ ID NO:4. Variations attributable to proteolysis include, for example,
differences in the N- or C-termini upon expression in different types of host cells,
due to proteolytic removal of one or more terminal amino acids from the TACE protein
(generally from 1-5 terminal amino acids).
[0028] As stated above, the invention provides isolated and purified, or homogeneous, TACE
polypeptides, both recombinant and non-recombinant. Variants and derivatives of native
TACE proteins that retain the desired biological activity may be obtained by mutations
of nucleotide sequences coding for native TACE polypeptides. Alterations of the native
amino, acid sequence may be accomplished by any of a number of conventional methods.
Mutations can be introduced at particular loci by synthesizing oligonucleotides containing
a mutant sequence, flanked by restriction sites enabling ligation to fragments of
the native sequence. Following ligation, the resulting reconstructed sequence encodes
an analog having the desired amino acid insertion, substitution, or deletion.
[0029] Alternatively, oligonucleotide-directed site-specific mutagenesis procedures can
be employed to provide an altered gene wherein predetermined codons can be altered
by substitution, deletion or insertion. Exemplary methods of making the alterations
set forth above are disclosed by Walder et al. (
Gene 42:133,1986); Bauer et al. (
Gene 37:73, 1985); Craik (
BioTechniques, January 1985,12-19); Smith et al. (
Genetic Engineering: Principles and Methods, Plenum Press, 1981); Kunkel (
Proc. Natl. Acad. Sci. USA 82:488, 1995); Kunkel et al. (
Methodt in Enzymol. 154:367, 1987); and U.S. Patent Nos. 4,518,584 and 4,737,462.
[0030] TACE may be modified to create TACE derivatives by forming covalent or aggregative
conjugates with other chemical moieties, such as glycosyl groups, polyethylene glycol
(PEG) groups, lipids, phosphate, acetyl groups and the like. Covalent derivatives
of TACE may be prepared by linking the chemical moieties to functional groups on TACE
amino acid side chains or at the N-terminus or C-terminus of a TACE polypeptide or
the extracellular domain thereof. Other derivatives of TACE within the scope of this
invention include covalent or aggregative conjugates of TACE or its fragments with
other proteins or polypeptides, such as by synthesis in recombinant culture as N-terminal
or C-terminal fusions. For example, the conjugate may comprise a signal or leader
polypeptide sequence (e.g. the α-factor leader of
Saccharomyces) at the N-terminus of a TACE polypeptide. The signal or leader peptide co-translationally
or post-translationally directs transfer of the conjugate from its site of synthesis
to a site inside or outside of the cell membrane or cell wall.
[0031] TACE polypeptide conjugates can comprise peptides added to facilitate purification
and identification of TACE. Such peptides include, for example, poly-His or the antigenic
identification peptides described in U.S. Patent No. 5,011,912 and in Hopp et al.,
Bio/
Technology 6:1204, 1988.
[0032] The invention further includes TACE polypeptides with or without associated native-pattern
glycosylation. TACE expressed in yeast or mammalian expression systems (e.g., COS-7
cells) may be similar to or significantly different from a native TACE polypeptide
in molecular weight and glycosylation pattern, depending upon the choice of expression
system. Expression of TACE polypeptides in bacterial expression systems, such as
E. coli, provides non-glycosylated molocules. Glycosyl groups may be removed through conventional
methods, in particular those utilizing glycopeptidase. In general, glycosylated TACE
may be incubated with a molar excess of glycopeptidase (Boehringer Mannheim).
[0033] Equivalent DNA constructs that encode various additions or substitutions of amino
acid residues or sequences, or deletions of terminal or internal residues or sequences
not needed for biological activity are encompassed by the invention. For example,
N-glycosylation sites in the TACE extracellular domain can be modified to preclude
glycosylation, allowing expression of a reduced carbohydrate analog in mammalian and
yeast expression systems. N-glycosylation sites in eukaryotic polypeptides are characterized
by an amino acid triplet Asn-X-Y, wherein X is any amino acid except Pro and Y is
Ser or Thr. Appropriate substitutions, additions or deletions to the nucleotide sequence
encoding these triplets will result in prevention of attachment of carbohydrate residues
at the Asn side chain. Alteration of a single nucleotide, chosen so that Asn is replaced
by a different amino acid, for example, is sufficient to inactivate an N-glycosylation
site. Known procedures for inactivating N-glycosylation sites in proteins include
those described in U.S. Patent 5,071,972 and EP 276,846.
[0034] In another example, sequences encoding Cys residues that are not essential for biological
activity can be altered to cause the Cys residues to be deleted or replaced with other
amino acids, preventing formation of incorrect intramolecular disulfide bridges upon
renaturation. Other equivalents are prepared by modification of adjacent dibasic amino
acid residues to enhance expression in yeast systems in which KEX2 protease activity
is present. EP 212,914 discloses the use of site-specific mutagenesis to inactivate
KEX2 protease processing sites in a protein. KEX2 protease processing sites are inactivated
by deleting, adding or substituting residues to alter Arg-Arg, Arg-Lys, and Lys-Arg
pairs to eliminate the occurrence of these adjacent base residues. Lys-Lys pairings
are considerably less susceptible to KEX2 cleavage, and conversion of Arg-Lys or Lys-Arg
to Lys-Lys represents a conservative and preferred approach to inactivating KEX2 sites.
[0035] Nucleic acid sequences within the scope of the invention include isolated DNA and
RNA sequences that hybridize to the native TACE nucleotide sequences disclosed herein
under conditions of moderate or high stringency, and which encode biologically active
TACE. Conditions of moderate Stringency. as known to those having ordinary skill in
the art, and as defined by Sambrook et al.
Molecular Cloning: A Laboratory Manual, 2 ed. Vol. 1, pp. 1.101-104, Cold Spring Harbor Laboratory Press., (1989). include
use of a prewashing solution of 5 X SSC, 0.5% SDS, 1.0 mM EDTA (pH 8.0) and hybridization
conditions of about 50°C - 60°C, 5 X SSC, overnight, preferably 55°C. Conditions of
high stringency include higher temperatures of hybridization and washing. The skilled
artisan will recognize that the temperature and wash solution salt concentration may
be adjusted as necessary according to factors such as the length of the probe.
[0036] Due to the known degeneracy of the genetic code wherein more than one codon can encode
the same amino acid. a DNA sequence may vary from that shown in SEQ ID NO:1 and still
encode a TACE protein having the amino acid sequence of SEQ ID NO:2 Such variant DNA
sequences may result from silent mutations (e.g., occurring during PCR amplification),
or may be the product of deliberate mutagenesis of a native sequence.
[0037] DNA that are equivalents to the DNA sequence of SEQ ID NO:1 will hybridize under
moderately stringent or highly stringent conditions to the double-stranded native
DNA sequence that encode polypeptides comprising amino acid sequences of 18 - Xaa
of SEQ ID NO:2, wherein Xaa is an amino acid from 671 to 824. Examples of TACE proteins
encoded by such DNA, include, but are not limited to, TACE fragments (soluble or membrane-bound)
and TACE proteins comprising inactivated N-glycosylation site(s), inactivated KEX2
protease processing site(s), or conservative amino acid substitution(s), as described
above. TACE proteins encoded by DNA derived from other mammalian species, wherein
the DNA will hybridize under conditions of moderate or high stringency to the complement
of the cDNA of SEQ ID NO:1 are also encompassed.
[0038] Alternatively, TACE-binding proteins, such as the anti-TACE antibodies of the invention,
can be bound to a solid phase such as a column chromatography matrix or a similar
substrate suitable for identifying, separating or purifying cells that express the
TACE on their surface. Adherence of TACE-binding proteins to a solid phase contacting
surface can be accomplished by any means, for example, magnetic microspheres can be
coated with TACE-binding proteins and held in the incubation vessel through a magnetic
field. Suspensions of cell mixtures are contacted with the solid phase that has TACE-binding
proteins thereon. Cells having TACE on their surface bind to the fixed TACE-binding
protein and unbound cells then are washed away. This affinity-binding method is useful
for purifying, screening or separating such TACE-expressing cells from solution. Methods
of releasing positively selected cells from the solid phase are known in the art and
encompass, for example, the use of enzymes. Such enzymes are preferably non-toxic
and non-injurious to the cells and are preferably directed to cleaving the cell-surface
binding partner.
[0039] Alternatively, mixtures of cells suspected of containing TACE-expressing cells first
can be incubated with a biotinylated TACE-binding protein. Incubation periods are
typically at least one hour in duration to ensure sufficient binding to TACE. The
resulting mixture then is passed through a column packed with avidin-coated beads,
whereby the high affinity of biotin for avidin provides the binding of the TACE-binding
cells to the beads. Use of avidin coated beads is known in the art. See Berenson,
et al.
J. Cell. Biochem, 10D:239 (1986). Wash of unbound material and the release of the bound cells is performed
using conventional methods.
[0040] In the methods described above, suitable TACE-binding proteins are anti-TACE antibodies.
and other proteins that are capable of high-affinity binding of TACE. A preferred
TACE-binding protein is an anti-TACE monoclonal antibody obtained, for example, as
described in Example 4.
[0041] TACE polypeptides may exist as oligomers, such as covalently-linked or non-covalently-linked
dimers or trimers. Oligomers may be linked by disulfide bonds formed between cysteine
residues on different TACE polypeptides. In one embodiment of the invention, a TACE
dimer is created by fusing TACE to the Fc region of an antibody (e.g., IgG1) in a
manner that does not interfere with biological activity of TACE. The Fc polypeptide
preferably is fused to the C-terminus- of a soluble TACE (comprising only the extracellular
domain). General preparation of fusion proteins comprising heterologous polypeptides
fused to various portions of antibody-derived polypeptides (including the Fc domain)
has been described, e.g., by Ashkenazi et al. (
PNAS USA 88:10535. 1991) and Byrn et al. (
Nature 344:677, 1990). A gene fusion encoding the TACE:Fc fusion protein is inserted into an
appropriate expression vector. TACE:Fc fusion proteins are allowed to assemble much
like antibody molecules, whereupon interchain disulfide bonds form between Fc polypeptides,
yielding divalent TACE. If fusion proteins are made with both heavy and light chains
of an antibody, it is possible to form a TACE oligomer with as many as four TACE extracellular
regions. Alternatively, one can link two soluble TACE domains with a peptide linker.
[0042] Recombinant expression vectors containing a nucleic acid sequence encoding TACE can
be prepared using well known methods. The expression vectors include a TACE DNA sequence
operably linked to suitable transcriptional or translational regulatory nucleotide
sequences, such as those derived from a mammalian, microbial, viral, or insect gene.
Examples of regulatory sequences include transcriptional promoters, operators, or
enhancers, an mRNA ribosomal binding site, and appropriate sequences which control
transcription and translation initiation and termination. Nucleotide sequences are
"operably linked" when the regulatory sequence functionally relates to the TACE DNA
sequence. Thus, a promoter nucleotide sequence is operably linked to a TACE DNA sequence
if the promoter nucleotide sequence controls the transcription of the TACE DNA sequence.
The ability to replicate in the desired host cells, usually conferred by an origin
of replication, and a selection gene by which transformants are identified, may additionally
be incorporated into the expression vector.
[0043] In addition, sequences encoding appropriate signal peptides that are not naturally
associated with TACE can be incorporated into expression vectors. For example, a DNA
sequence for a signal peptide (secretory leader) may be fused in-frame to the TACE
sequence so that TACE is initially translated as a fusion protein comprising the signal
peptide. A signal peptide that is functional in the intended host cells enhances extracellular
secretion of the TACE polypeptide. The signal peptide may be cleaved from the TACE
polypeptide upon secretion of TACE from the cell.
[0044] Suitable host cells for expression of TACE polypeptides include prokaryotes, yeast
or higher eukaryotic cells. Appropriate cloning and expression vectors for use with
bacterial, fungal, yeast, and mammalian cellular hosts are described, for example,
in Pouwels et al.
Cloning Vectors: A Laboratory Manual, Elsevier, New York, (1985). Cell-free translation systems could also be employed
to produce TACE polypeptides using RNAs derived from DNA constructs disclosed herein.
[0045] Prokaryotes include gram negative or gram positive organisms, for example,
E. coli or
Bacilli. Suitable prokaryotic host cells for transformation include, for example,
E. coli, Bacillus subtilis, Salmonella typhimurium, and various other species within the genera
Pseudomonas, Streptomyces, and
Staphylococcus. In a prokaryotic host cell, such as
E. coli, a TACE polypeptide may include an N-terminal methionine residue to facilitate expression
of the recombinant polypeptide in the prokaryotic host cell. The N-terminal Met may
be cleaved from the expressed recombinant TACE polypeptide.
[0046] Expression vectors for use in prokaryotic host cells generally comprise one or more
phenotypic selectable marker genes. A phenotypic selectable marker gene is, for example,
a gene encoding a protein that confers antibiotic resistance or that supplies an autotrophic
requirement. Examples of useful expression vectors for prokaryotic host cells include
those derived from commercially available plasmids such as the cloning vector pBR322
(ATCC 37017). pBR322 contains genes for ampicillin and tetracycline resistance and
thus provides simple means for identifying transformed cells. To construct en expression
vector using pBR322, an appropriate promoter and a TACE DNA sequence are inserted
into the pBR322 vector. Other commercially available vectors include, for example,
pKK223-3 (Pharmacia Fine Chemicals, Uppsala, Sweden) and pGEMI (Promega Biotec, Madison,
WI, USA).
[0047] Promoter sequences commonly used for recombinant prokaryotic host cell expression
vectors include β-lactamase (penicillinase), lactose promoter system (Chang et al.,
Narure 275:615, 1978; and Goeddel et al.,
Nature 281:544, 1979), tryptophan (trp) promoter system (Goeddel et al.,
Nucl. Acids Res. 8:4057, 1980; and EP-A-36776) and tac promoter (Maniatis,
Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, p. 412, 1982). A particularly useful prokaryotic host
cell expression system employs a phage λ P
L promoter and a cI857ts thermolabile repressor sequence. Plasmid vectors available
from the American Type Culture Collection which incorporate derivatives of the λ P
L promoter include plasmid pHUB2 (resident in
E. coli strain JMB9 (ATCC 37092)) and pPLc28 (resident in
E. coli RR1 (ATCC 53082)).
[0048] TACE polypeptides alternatively may be expressed in yeast host cells, preferably
from the
Saccharomyces genus (e.g.,
S. cerevisiae). Other genera of yeast, such as
Pichia, K. lactis or
Kluyveromyces, may also be employed. Yeast vectors will often contain an origin of replication sequence
from a 2µ yeast plasmid, an autonomously replicating sequence (ARS), a promoter region,
sequences for polyadenylation, sequences for transcription termination, and a selectable
marker gene. Suitable promoter sequences for yeast vectors include, among others,
promoters for metallothionein, 3-phosphoglycerate kinase (Hitzeman et al.,
J. Biol. Chem. 255:2073, 1980) or other glycolytic enzymes (Hess et al.,
J. Adv. Enzyme Reg. 7:149, 1968; and Holland et al.,
Biochem. 17:4900
, 1978), such as enolase, glyceraldehyde-3-phosphate dehydrogenase, hexokinase, pyruvate
decarboxylase, phosphofructokinase, glucose-6-phosphate isomerase, 3-phosphoglycerate
mutase, pyruvate kinase, triosephosphate isomerase, phosphoglucose isomerase, and
glucokinase. Other suitable vectors and promoters for use in yeast expression are
further described in Hitzeman, EPA-73,657 or in Fleer et. al.,
Gene, 107:285-195 (1991); and van den Berg et. al.,
Bio/
Technology, 8:135-139 (1990). Another alternative is the glucose-repressible ADH2 promoter described
by Russell et al. (
J. Biol. Chem. 258:2674, 1982) and Beier et al.
(Nature 300:724, 1982). Shuttle vectors replicable in both yeast and
E. coli may be constructed by inserting DNA sequences from pBR322 for selection and replication
in
E. coli (Amp
r gene and origin of replication) into the above-described yeast vectors.
[0049] The yeast α-factor leader sequence may be employed to direct secretion of a TACE
polypeptide. The α-factor leader sequence is often inserted between the promoter sequence
and the structural gene sequence. See, e.g., Kurjan et al.,
Cell 30:933, 1982; Bitter et al.,
Proc. Natl. Acad. Sci. USA 81:5330, 1984; U. S. Patent 4,546,082; and EP 324,274. Other leader sequences suitable
for facilitating secretion of recombinant polypeptides from yeast hosts are known
to those of skill in the art. A leader sequence may be modified near its 3' end to
contain one or more restriction sites. This will facilitate fusion of the leader sequence
to the structural gene.
[0050] Yeast transformation protocols are known to those of skill in the art. One such protocol
is described by Hinnen et al.,
Proc. Natl. Acad. Sci.
USA 75:1929, 1978. The Hinnen et al. protocol selects for Trp
+ transformants in a selective medium, wherein the selective medium consists of 0.67%
yeast nitrogen base, 0.5% casamino acids, 2% glucose, 10 µg/ml adenine and 20 µg/ml
uracil.
[0051] Yeast host cells transformed by vectors containing ADH2 promoter sequence may be
grown for inducing expression in a "rich" medium. An example of a rich medium is one
consisting of 1% yeast extract, 2% peptone, and 1% glucose supplemented with 80 µg/ml
adenine and 80 µg/ml uracil. Derepression of the ADH2 promoter occurs when glucose
is exhausted from the medium.
[0052] Mammalian or insect host cell culture systems could also be employed to express recombinant
TACE polypeptides. Baculovirus systems for production of heterologous proteins in
insect cells are reviewed by Luckow and Summers,
Bio/
Technology 6:47 (1988). Established cell lines of mammalian origin also may be employed. Examples
of suitable mammalian host cell lines include the COS-7 line of monkey kidney cells
(ATCC CRL 1651) (Gluzman et al.,
Cell 23:175, 1981 ), L cells, C127 cells, 3T3 cells (ATCC CCL 163), Chinese hamster ovary
(CHO) cells, HeLa cells, and BHK (ATCC CRL 10) cell lines, and the CV-1/EBNA-1 cell
line derived from the African green monkey kidney cell line CVI (ATCC CCL 70) as described
by McMahan et al. (
EMBO J. 10: 2821,1991).
[0053] Transcriptional and translational control sequences for mammalian host cell expression
vectors may be excised from viral genomes. Commonly used promoter sequences and enhancer
sequences are derived from Polyoma virus, Adenovirus 2, Simian Virus 40 (SV40), and
human cytomegalovirus. DNA sequences derived from the SV40 viral genome, for example,
SV40 origin, early and late promoter, enhancer, splice, and polyadenylation sites
may be used to provide other genetic elements for expression of a structural gene
sequence in mammalian host cell. Viral early and late promoters are particularly useful
because both are easily obtained from a viral genome as a fragment which may also
contain a viral origin of replication (Fiers et al.,
Nature 273:113, 1978). Smaller or larger SV40 fragments may also be used, provided the approximately
250 bp sequence extending from the
Hind III site toward the
Bgl I site located in the SV40 viral origin of replication site is included.
[0054] Exemplary expression vectors for use in mammalian host cells can be constructed as
disclosed by Okayama and Berg (
Mol. Cell. Biol. 3:280, 1983). A useful system for stable high level expression of mammalian cDNAs in
C127 murine mammary epithelial cells can be constructed substantially as described
by Cosman et aL (
Mol. Immunol. 23:935, 1986). A useful high expression vector, PMLSV N1/N4, described by Cosman et
al, Nature 312:768, 1984 has been deposited as ATCC 39890. Additional useful mammalian expression
vectors are described in EP-A-0367566. and in U.S. Patent Application Serial No. 07/701,415,
filed May 16, 1991. The vectors may be derived from retroviruses. In place of the
native signal sequence, a heterologous signal sequence may be added, such as the signal
sequence for IL-7 described in United States Patent 4,965,195; the signal sequence
for IL-2 receptor described in Cosman et al.,
Nature 312:768 (1984); the IL-4 signal peptide described in EP 367,566; the type I IL-1 receptor
signal peptide described in U.S. Patent 4.968.607; and the type II IL-1 receptor signal
peptide described in EP 460,846.
[0055] An isolated and purified TACE protein according to the invention may be produced
by recombinant expression systems as described above or purified from naturally occurring
cells. TACE can be substantially purified, as indicated by a single protein band upon
analysis by SDS-polyacrylamide gel electrophoresis (SDS-PAGE). One process for producing
TACE comprises culturing a host cell transformed with an expression vector comprising
a DNA sequence that encodes TACE under conditions sufficient to promote expression
of TACE. TACE is then recovered from culture medium or cell extracts, depending upon
the expression system employed. As is known to the skilled artisan, procedures for
purifying a recombinant protein will vary according to such factors as the type of
host cells employed and whether or not the recombinant protein is secreted into the
culture medium. For example, when expression systems that secrete the recombinant
protein are employed, the culture medium first may be concentrated using a commercially
available protein concentration filter, for example, an Amicon or Millipore Pellicon
ultrafiltration unit. Following the concentration step, the concentrate can be applied
to a purification matrix such as a gel filtration medium. Alternatively, an anion
exchange resin can be employed, for example, a matrix or substrate having pendant
diethylaminoethyl (DEAE) groups. The matrices can be acrylamide, agarose. dextran.
cellulose or other types commonly employed in protein purification. Alternatively,
a cation exchange step can be employed. Suitable cation exchangers include various
insoluble matrices comprising sulfopropyl or carboxymethyl groups. Sulfopropyl groups
are preferred. Finally, one or more reversed-phase high performance liquid chromatography
(RP-HPLC) steps employing hydrophobic RP-HPLC media. (e.g., silica gel having pendant
methyl or other aliphatic groups) can be employed to further purify TACE. Some or
all of the foregoing purification steps, in various combinations, are well known and
can be employed to provide an isolated and purified recombinant protein.
[0056] In addition to recombinantly producing TACE, TACE may be isolated and purified from
an activated monocytic cell line, THP-1. THP-1 cells typically produce more TNF-α
than do HL-60 cells, and are a preferred source for TACE. Other sources for TACE may
be used, and TACE may also be found in other types of cells that produce TNF-α. Once
a source for TACE is identified, TACE may be isolated and purified by first optionally
stimulating the source cells to produce TNF-α. Stimulation may not be necessary, however,
it can be done using techniques that are well-known in the art. The cells are then
harvested, washed, and plasma membranes isolated according to conventional procedures.
A particularly preferred method of isolating the plasma membranes is method number
three as described in Maeda et. al.,
Biochim. et. Biophys. Acta, 731:115 (1983); except that dithiothreitol should not be included in this method since
it was determined that dithiothreitol blocks TACE activity. Proteins from the cell
membrane then can be solubilized by suspending the membrane preparation in a dilute
solution of non-ionic detergent, followed by brief homogenization. Phospholipids then
can be extracted using conventional methods.
[0057] It is possible to utilize an affinity column comprising a TACE-binding protein to
affinity-purify expressed TACE polypeptides. TACE polypeptides can be removed from
an affinity column using conventional techniques, e.g., in a high salt elution buffer
and then dialyzed into a lower salt buffer for use or by changing pH or other components
depending on the affinity matrix utilized. Example 4 describes a procedure for employing
TACE of the invention to generate monoclonal antibodies directed against TACE.
[0058] Recombinant protein produced in bacterial culture is usually isolated by initial
disruption of the host cells, centrifugation, extraction from cell pellets if an insoluble
polypeptide, or from the supernatant fluid if a soluble polypeptide, followed by one
or more concentration, salting-out, ion exchange, affinity purification or size exclusion
chromatography steps. Finally, RP-HPLC can be employed for final purification steps.
Microbial cells can be disrupted by any convenient method, including freeze-thaw cycling,
sonication, mechanical disruption, or use of cell lysing agents.
[0059] Transformed yeast host cells are preferably employed to express TACE as a secreted
polypeptide in order to simplify purification. Secreted recombinant polypeptide from
a yeast host cell fermentation can be purified by methods analogous to those disclosed
by Urdal et al. (
J. Chromatog. 296:171, 1984). Urdal et al. describe two sequential, reversed-phase HPLC steps for purification
of recombinant human IL-2 on a preparative HPLC column.
[0060] Antisense or sense oligonucleotides comprising a single-stranded nucleic acid sequence
(either RNA or DNA) capable of binding to a target TACE mRNA sequence (forming a duplex)
or to the TACE sequence in the double-stranded DNA helix (forming a triple helix)
can be made according to the invention. Antisense or sense oligonucleotides, according
to the present invention, comprise a fragment of the coding region of TACE cDNA. Such
a fragment generally comprises at least about 14 nucleotides, preferably from about
14 to about 30 nucleotides. The ability to create an antisense or a sense oligonucleotide,
based upon a cDNA sequence for a given protein is described in, for example, Stein
and Cohen,
Cancer Res. 48:2659, 1988 and van der Krol et al.,
BioTechniques 6:958, 1988.
[0061] Binding of antisense or sense oligonucleotides to target nucleic acid sequences results
in the formation of complexes that block translation (RNA) or transcription (DNA)
by one of several means, including enhanced degradation of the duplexes, premature
termination of transcription or translation, or by other means. The antisense oligonucleotides
thus may be used to block expression of TACE proteins. Antisense or sense oligonucleotides
further comprise oligo-nucleotides having modified sugar-phosphodiester backbones
(or other sugar linkages, such as those described in WO91/06629) and wherein such
sugar linkages are resistant to endogenous nucleases. Such oligonucleotides with resistant
sugar linkages are stable
in vivo (i.e., capable of resisting enzymatic degradation) but retain sequence specificity
to be able to bind to target nucleotide sequences. Other examples of sense or antisense
oligonucleotides include those oligonucleotides which are covalently linked to organic
moieties, such as those described in WO 90/10448, and other moieties that increases
affinity of the oligonucleotide for a target nucleic acid sequence, such as poly-(L-lysine).
Further still, intercalating agents, such as ellipticine, and alkylating agents or
metal complexes may be attached to sense or antisense oligonucleotides to modify binding
specificities of the antisense or sense oliginucleotide for the target nucleotide
sequence.
[0062] Antisense or sense oligonucleotides may be introduced into a cell containing the
target nucleic acid sequence by any gene transfer method, including, for example,
CaPO
4-mediated DNA transfection, electroporation, or by using gene transfer vectors such
as Epstein-Barr virus. Antisense or sense oligonucleotides are preferably introduced
into a cell containing the target nucleic acid sequence by insertion of the antisense
or sense oligonucleotide into a suitable retroviral vector, then contacting the cell
with the retrovirus vector containing the inserted sequence, either
in vivo or
ex vivo., Suitable retroviral vectors include, but are not limited to, the murine retrovirus
M-MuL V, N2 (a retrovirus derived from M-MuL V), or or the double copy vectors designated
DCT5A, DCT5B and DCT5C (see PCT Application US 90/02656).
[0063] Sense or antisense oligonucleotides also may be introduced into a cell containing
the target nucleotide sequence by formation of a conjugate with a ligand binding molecule,
as described in WO 91/04753. Suitable ligand binding molecules include, but are not
limited to, cell surface receptors, growth factors, other cytokines, or other ligands
that bind to cell surface receptors. Preferably, conjugation of the ligand binding
molecule does not substantially interfere with the ability of the ligand binding molecule
to bind to its corresponding molecule or receptor, or block entry of the sense or
antisense oligonucleotide or its conjugated version into the cell.
[0064] Alternatively, a sense or an antisense oligonucleotide may be introduced into a cell
containing the target nucleic acid sequence by formation of an oligonucleotide-lipid
complex, as described in WO 90/10448. The sense or antisense oligonucleotide-lipid
complex is preferably dissociated within the cell by an endogenous lipase.
[0065] Isolated and purified TACE or a fragment thereof, and in particular, the extracellular
domain of TACE, may also be useful itself as a therapeutic agent in regulating the
levels of certain cell surface proteins. In addition to TNF-α, other cytokines as
well as cytokine receptors and several adhesion proteins may be released from the
cell surface by TACE or related proteases. TACE or a fragment thereof, in particular,
the extracellular domain of TACE, may be administered to modulate or remove cell surface
cytokines, cytokine receptors and adhesion proteins involved in tumor cell growth,
inflammation, or fertilization. When used as a therapeutic agent, TACE can be formulated
into pharmaceutical compositions according to known methods. TACE can be combined
in pharmaceutical compositions according to known methods. TACE can be combined in
admixture, either as the sole active material or with other known active materials,
with pharmaceutically suitable diluents (e.g., Tris-HCl, acetate, phosphate), preservatives
(e.g., Thimerosal, benzyl alcohol, parabens), emulsifiers, solubilizers, adjuvants
and/or carriers. Suitable carriers and their formulations are described in Remington's
Pharmaceutical Sciences, 16th ed. 1980, Mack Publishing Co. In addition, such compositions
can contain TACE complexed with polyethylene glycol (PEG), metal ions, or incorporated
into polymeric compounds such as polyacetic acid, polyglycolic acid, hydrogels, etc.,
or incorporated into liposomes, microemulsions, micelles, unilamellar or multilamellar
vesicles, erythrocyte ghosts or spheroblasts. Such compositions will influence the
physical state, solubility, stability, rate of
in vivo release, and rate of
in vivo clearance of TACE.
[0066] TACE may be assayed using any of a variety of metalloprotease assays known in the
art. In general, TACE can be assayed through the use of a peptide substrate that represents
the natural cleavage site of TNF-α. For example, in order to detect the cleavage of
a substrate by TACE, the substrate can be tagged with a fluorescent group on one side
of the cleavage site and with a fluorescence-quenching group on the opposite side
of the cleavage site. Upon cleavage by TACE, quenching is eliminated thus providing
a detectable signal. Alternatively, the substrate may be tagged with a colorimetric
leaving group that more strongly absorbs upon cleavage. Alternatively, the substrate
may have a thioester group synthesized into the cleavage site of the substrate so
that upon cleavage by TACE, the thiol group remains and can be easily detected using
conventional methods. A particularly preferred method of detecting TACE activity in
a sample is described in Example 1, infra. Other methods of detecting TACE activity
may be utilized without resorting to undue experimentation.
[0067] As further described in Example 1,
infra, a quantitative assay for TACE also may be used which assay involves incubating the
peptide substrate, at about 1 mM, with TACE at 37 °C for a fixed period of time; stopping
the reaction by the addition of an acid or a metal chelator, and determining the extent
of cleavage by HPLC analysis.
[0068] Within an aspect of the invention, TACE, and peptides based on the amino acid sequence
of TACE, may be utilized to prepare antibodies that specifically bind to TACE. A specific
example of such antibody preparation is described in Example 4 herein. The term "antibodies"
is meant to include polyclonal antibodies, monoclonal antibodies, fragments thereof
such as F(ab')2, and Fab fragments, as well as any recombinantly produced binding
partners. Antibodies are defined to be specifically binding if they bind TACE with
a K
a of greater than or equal to about 10
7 M
-1. Affinities of binding partners or antibodies can be readily determined using conventional
techniques, for example those described by Scatchard et al.,
Ann. N.Y. Acad. Sci., 51:660 (1949).
[0069] Polyclonal antibodies can be readily generated from a variety of sources, for example,
horses, cows, goats, sheep, dogs, chickens, rabbits, mice or rats, using procedures
that are well-known in the art. In general, purified TACE, or a peptide based on the
amino acid sequence of TACE that is appropriately conjugated, is administered to the
host animal typically through parenteral injection. The immunogenicity of TACE may
be enhanced through the use of an adjuvant, for example, Freund's complete or incomplete
adjuvant. Following booster immunizations, small samples of serum are collected and
tested for reactivity to TACE or the TACE peptides. Examples of various assays useful
for such determination include those described in:
Antibodies: A Laborarory Manual, Harlow and Lane (eds.), Cold Spring Harbor Laboratory Press, 1988; as well as procedures
such as countercurrent immuno-electrophoresis (CIEP), radioimmunoassay, radioimmunoprecipitation,
enzyme-linked immuno-sorbent assays (ELISA), dot blot assays, and sandwich assays,
see U.S. Patent Nos. 4,376,110 and 4,486,530.
[0070] Monoclonal antibodies may be readily prepared using well-known procedures, see for
example, the procedures described in U.S. Patent Nos. RE 32,011, 4,902,614, 4,543,439
and 4,411,993; Monoclonal Antibodies, Hybridomas:
A New Dimension in Biological Analyses, Plenum Press, Kennett, McKearn, and Bechtol (eds.), 1980. Briefly, the host animals,
such as mice are injected intraperitoneally at least once, and preferably at least
twice at about 3 week intervals with isolated and purified TACE or conjugated TACE
peptide, optionally in the presence of adjuvant. Mouse sera are then assayed by conventional
dot blot technique or antibody capture (ABC) to determine which animal is best to
fuse. Approximately two to three weeks later, the mice are given an intravenous boost
of TACE or conjugated TACE peptide. Mice are later sacrificed and spleen cells fused
with commercially available myeloma cells, such as Ag8.653 (ATCC), following established
protocols. Briefly, the myeloma cells are washed several times in media and fused
to mouse spleen cells at a ratio of about three spleen cells to one myeloma cell.
The fusing agent can be any suitable agent used in the art, for example, polyethylene
glycol (PEG). Fusion is plated out into plates containing media that allows for the
selective growth of the fused cells. The fused cells can then be allowed to grow for
approximately eight days. Supernatants from resultant hybridomas are collected and
added to a plate that is first coated with goat anti-mouse Ig. Following washes, a
label, such as,
125I-TACE is added to each well followed by incubation. Positive wells can be subsequently
detected by autoradiography. Positive clones can be grown in bulk culture and supernatants
are subsequently purified over a Protein A column (Pharmacia).
[0071] The monoclonal antibodies of the invention can be produced using alternative techniques,
such as those described by Alting-Mees et al., "Monoclonal Antibody Expression Libraries:
A Rapid Alternative to Hybridomas",
Strategies in Molecular Biology 3:1-9 (1990). Similarly, binding partners can be constructed using recombinant DNA
techniques to incorporate the variable regions of a gene that encodes a specific binding
antibody. Such a technique is described in Larrick et al.
, Biotechnology, 7:394 (1989).
[0072] Other types of "antibodies" may be produced using the information provided herein
in conjunction with the state of knowledge in the art. For example, humanized antibodies
that are capable of specifically binding TACE are also encompassed by the invention.
[0073] Once isolated and purified, the antibodies against TACE may be used to detect the
presence of TACE in a sample using established assay protocols. Further, the antibodies
of the invention may be used therapeutically to hind to TACE and inhibit its activity
in vivo.
[0074] The purified TACE according to the invention may facilitate the discovery of inhibitors
of TACE, and thus. inhibitors of excessive TNF-α release. The use of a purified TACE
polypeptide in the screening of potential inhibitors thereof is important and can
virtually eliminate the possibility of interfering reactions with contaminants. Such
a screening assay for detecting the TACE-inhibiting activity of a molecule would typically
involve mixing the potential inhibitor molecule with an appropriate substrate, incubating
TACE that is at least substantially purified with the mixture, and determining the
extent of substrate cleavage as, for example, described above. While various appropriate
substrates may be designed for use in the assay, preferably, a peptidyl substrate
is used, and which substrate comprises the amino acid sequence Leu-AIa-GIn-AIa-VaI-Arg-Ser-Ser
(SEQ ID NO:5).
[0075] In addition, TACE polypeptides can also be used for structure-based design of TACE-inhibitors.
Such structure-based design is also known as "rational drug design." The TACE polypeptides
can be three-dimensionally analyzed by, for example, X-ray crystallography, nuclear
magnetic resonance or homology modeling, all of which are well-known methods.
[0076] Such computer-assisted modeling and drug design may utilize information such as chemical
conformational analysis, electrostatic potential of the molecules, protein folding,
etc. For example, most of the design of class-specific inhibitors of metalloproteases
has focused on attempts to chelate or bind the catalytic zinc atom. Synthetic inhibitors
at usually designed to contain a negatively-charged moiety to which is attached a
series of other groups designed to fit the specificity pockets of the particular protease.
[0077] The following Examples provide an illustration of embodiments of the invention and
should not be construed to limit the scope of the invention which is set forth in
the appended claims. In the following Examples, all methods described are conventional
unless otherwise specified.
EXAMPLE 1
Purification of the TNF-α Converting Enzyme
[0078] This Example describes a method for purifying TACE. The TACE was isolated and purified
from the membranes of the human monocytic cell line, THP-1, (ATCC no. TIB 202) that
had been stimulated to produce TNF-α. THP-1 cells were chosen because they produce
more TNT-α than HL-60 cells, a more commonly used human monocytic cell line. Approximately
120 billion cells were stimulated using the procedure previously described by Kronheim
et al.,
Arch. Biochem. Biophys. 269:698 (1992).
[0079] Two hours after stimulation, the cells were harvested by centrifugation. The harvested
cells were washed at least twice with Hanks balanced salt solution, and plasma membranes
were isolated according to method number three as described by Maeda et. al.,
Biochim. et. Biophys. Acta, 731:115 (1983), except that dithiothreitol was not used, utilizing 1.25 ml of homogenization
buffer per ml of cell pellet. It was determined that the standard procedure of Maeda
et. al., Id., utilizing dithiothreitol, failed to yield compounds having TACE activity
(an assay for TACE activity is described below). Proteins were then solubilized by
resuspending the membrane preparation in a solution of 1% octylglucoside. 10 mM Tris-HCl
(pH 8), 1 mM MgCl
2 and 30 mM NaCl and briefly homogenizing with a Brinkman Homogenizer (twice, five
seconds each time). Phospholipids were then extracted by adding four volumes of ice-cold
(0°C) acetone; after a thirty-minute incubation at 4°C, the acetone-extracted material
was centrifuged at 1500 rpm for 10 minutes in a H1000B rotor.
Chromatography
[0080] The pelleted material was dissolved in 450 ml of Buffer A (Buffer A comprises 10
mM Tris-HCl (pH 7.5) and 1% octylglucoside (weight to volume percent)) and applied
to a 120 ml column of DEAE-Sepharose fast-flow (Pharmacia) at 4 ml per minute. The
column then was washed with 360 ml of Buffer A at 6 ml per minute, and protein was
then eluted with an increasing gradient of NaCl (0-0.3 M) in Buffer A applied at 6
ml per minute over a period of 40 minutes. TACE was eluted with a NaCl concentration
of about 50 to about 150 mM.
[0081] TACE was originally detected at this point by its ability to cleave recombinant 26
kD TNF-α fused to the "flag" (T.P. Hopp, et al.,
Bio Technology, 6:1204 (1988) sequence of 8 amino acids at the amino-terminus. The gene encoding human
TNF-α was spliced to DNA encoding the flag sequence, and this construct was placed
in the pPL3 vector (C. Maliszewski et al.,
Molec. Immunol., 25:429 (1987). The protein was then expressed in a protease-deficient strain of
E. coli (R.T. Libby et al.,
DNA, 6:221 (1987) which was found necessary to prevent degradation of the precursor by the
bacteria. After removal of growth medium, the bacteria were resuspended in 30 mM Tris-HCl
(pH 8), 5 mM EDTA, and the suspension was sonicated for about 30 seconds. The material
was then centrifuged at 20,000 rpm in an SS34 rotor for 30 minutes, the supernatant
fraction was discarded, and the pellet was resuspended with 8 M urea in 10 mM Tris-HCl
(pH 8). The material was homogenized with 25 strokes in a dounce homogenizer and then
centrifuged at 20,000 rpm in an SS34 rotor for 30 minutes. The supernatant fraction,
which contained the precursor TNF-α, was then dialyzed four times against 10 mM Tris-HCl
(pH 8).
[0082] This material was incubated at 37 °C for at least 4 hours with the TACE eluted from
the DEAE-Sepharose, that had been treated with 1 mM N-methoxysuccinyl-Ala-Ala-Val-chloro-methylketone,
10 µg/ml leupeptin, and 1 mg/ml α1-protease inhibitor, all of which are commercially
available. The N-terminus of the resulting 17 kD product was found to be that of authentic
TNF-α. After the initial identification of TACE in this way, it was found that the
enzyme also cleaves an 8-residue peptide representing the segment Leu
73-Ala
74-Gln
75-Ala
76- ↓ -Val
77-Arg
78-Ser
79-Ser
80 (SEQ ID NO:5) of TNF-α. Wherein the (↓) illustrates the cleavage site. Based on this
observation, a quantitative assay was established: the peptide, at 1 mM, was incubated
with the enzyme at 37 °C for a fixed period of time, in the presence of 0.1 mM dichloroisocoumatin,
1 mM methoxysuccinyl-Ala-Ala-Pro-Val-chloromethyl-ketone, 10 µg/ml leupeptin, 10 µM
bestatin, and 1 mg/ml α1-protease inhibitor (Sigma), all of which are commercially
available. The reaction was then stopped by the addition of acid or a metal chelator.
The extent of cleavage of this peptide, reflecting the amount of TACE present, was
determined by applying the mixture to a Vydac C18 column and eluting with a gradient
of 0 to 30% acetonitrile over a period of 15 minutes.
[0083] Material that eluted from the DEAE column with 0.05-0.25 M NaCl had about a 4-fold
higher specific activity than the starting material. The eluted material was sonicated
and then shaken with wheat germ agglutinin-agarose (Vector Laboratories) for two hours
at 4 °C. Prior to use, the wheat germ agglutinin-agarose was washed with 5 column
volumes of Buffer B (Buffer B comprises 10 mM Tris-HCl (pH 7.5), 0.15 M NaCl, 0.1
mM MnCl
2, 0.1 mM CaCl
2, 1% octylglucoside and 10% glycerol); 1 ml of this resin was used for every 2 mg
of protein in the sample, as determined by the BCA protein assay (Pierce). After two
hours, the resin was washed with 7 volumes of Buffer B, and material was then eluted
with 5 column volumes of Buffer B plus 0.3 M acetylglucosamine (Sigma), with 30 minute
intervals between the application of each column volume.
[0084] Eluted fractions containing TACE activity had about a ten-fold higher specific activity
than the starting material. These fractions were concentrated to about 5 ml with Centriprep-30
concentrators (Amicon) and then diluted three-fold with Buffer C (Buffer C comprises
10 mM Tris-HCl (pH 8), 1 % octylglucoside and 10% glycerol). The diluted material
was sonicated (three 10-second bursts) and then loaded onto a MonoQ HR 5/5 column
(Pharmacia) at 0.5ml per minute. The column was then washed with 10 ml of Buffer C
at 0.5 ml per minute, and material was eluted with a 0 to 0.25 M NaCl gradient in
Buffer C at 0.5 ml per minute over a period of 30 minutes. TACE activity (detected
at this stage and subsequently by incubation with the previously described peptide
substrate in the absence of protease inhibitors) eluted with about 0.15M NaCl.
[0085] The NaCl concentration in the MonoQ fractions containing activity was reduced by
at least ten-fold by diluting the material into Buffer C, and the material was then
applied to a column of hydroxyapatite (American International Chemical, ceramic hydroxyapatite
HS40) at the rate of 0.5 ml per minute. After washing with three column volumes of
Buffer C, protein was eluted with a 0 to 50 mM gradient of sodium phosphate at 1 ml
per minute over a period of 30 minutes. TACE eluted with about 15 mM sodium phosphate.
[0086] The TACE eluted from the hydroxyapatite column was then concentrated to about 100
µl with Centricon-50 concentrators (Amicon) and applied to a Bio-Rad SEC-400 sizing
column (30cm). Protein was eluted with Buffer C run through the column at 0.5 ml per
minute; TACE eluted at about 28 minutes.
[0087] The TACE eluted from the sizing column was diluted three-fold into Buffer D (Buffer
D comprises 20 mM MES (pH 6), 1% octyglucoside and 10% glycerol) and applied to a
1 ml column of Red 120-agrose (Sigma) at 0.25 ml per minute. After the column was
washed with 10 ml Buffer D, protein was eluted with a 0 to 1 M NaCl gradient in Buffer
D at 0.25 ml per minute over a period of 60 minutes. TACE eluted with 0.2 to 0.3 M
NaCl. Five percent of each eluted fraction was run on a SDS-polyacrylamide gel (10%),
and silver staining showed that the predominant protein in the fractions with activity
ran approximately midway between the 66 and 97 kD markers (Novex) on the gel, at approximately
80 kD.
[0088] Trifluoroacetic acid (TFA) was added to 0.2% (volume-to-volumne percentage) to a
pool of the fractions containing the approximately 80 kD protein, and the mixture
was then pumped onto a 2.1 x 5 cm C4 column at approximately 100 µl per minute using
a Shimadzu LC- 10AD. Protein was eluted with a 0 to 100% gradient of acetonitrile
in 0.1 % TFA at 100 µl per minute over a period of 100 minutes. One minute fractions
were collected and 5 to 10% of each fraction was run on a Novex SDS-polyacrylamide
gel (10%). Fractions that eluted with about 70% acetonitrile and that contained a
protein of approximately 80 kD were pooled and evaporated to dryness.
Generation of peptides and sequencing
[0089] This pool of fractions then was dissolved in 200 µl of 50 mM Tris-HCl (pH 8), 1 mM
EDTA, and an amount of endo-LYS-C (Promega) equal to about 1/50 of the amount of protein
in the sample was added. The material was incubated at 37 °C overnight, and then a
fresh aliquot of the same amount of endo-LYS-C was added for an additional 3 hours
at 37 °C.
[0090] The resulting peptides were separated by applying the material to a capillary C18
column at 20 µl per minute and eluting with an ascending gradient of acetonitrile
(0.5% per minute) in 0.1% TFA over a period of 200 minutes. Peptides were sequenced
with an ABI 476 or an ABI 494 automated sequencer.
EXAMPLE 2
Preparation of Isolated and Purified TACE
[0091] This Example describes a method for further purifying the purified TACE as was obtained
using the procedures described above. Purified TACE obtained from the THP-1 cells
may contain small amounts of human lysosomal 85 kD sialoglycoprotein (
Biochem. Biophys. Res. Commun. 184:604-611 (1992) and human lysosomal alpha-mannosidase (
Biochem. Biophys. Res. Comm. 200:239-245 (1994) that can be removed using standard immunoadsorbant procedures, as
described in, for example, Robert K. Scopes,
Protein Purification--Principles and Practice (Springer-Verlag, 2nd edit.), pp. 167-172. Using the procedures described in this
Example 2, isolated and purified TACE can be obtained.
EXAMPLE 3
Cloning of Human TACE
[0092] This example describes a procedure for isolating a DNA sequence encoding human TACE.
A random primed cDNA library was generated from the commercially available cell line
THP-1 (Amersham) using conventional methods. Polymerase chain reaction (PCR) (Mullis
and Faloona,
Meth. Enzymol. 155:335-350, 1987) amplifications were performed using the following primers:


[0093] Primer (1) is based on the first five amino acids of Peptide (2) with the addition
of a triplet coding for lysine at the 5' end. Primer (2) is antisense to a conserved
amino acid sequence Glu-Glu-Cys-Asp-Cys-Gly (EECDCG) SEQ ID NO:8, which is found in
a homologous metalloprotease, bovine reprolysin 1 (GenBank Accession #Z21961).
[0094] Single stranded cDNA was amplified using the mixed oligonucleotides described above
under standard PCR conditions. The PCR reaction products were fractionated by gel
electrophoresis and DNA bands of approximately 180 bp were isolated and subcloned
into commercially available pBLUESCRIPT. Sequencing revealed a clone that contained
a nucleotide sequence that codes for the amino acids De-Ala-Val-Ser-Gly-Asp-His-Glu-Asn-Asn-Lys
(SEQ ID NO:9) and a nucleotide sequence that codes for amino acids Glu-Glu-Cys-Asp-Cys-Gly
(EECDCG) (SEQ ID NO:8). This clone was termed the "30CD clone." The 30CD clone was
sequenced and primers were generated based on this sequence. The primers then were
used to detect TACE cDNA in phage library made from human KB cells. This library was
screened under conventional conditions using a probe based on the 30CD sequence. Positive
hybridizing plaques were isolated and DNA fragments of these clones were sequenced.
Sequencing provided a full length cDNA of human TACE which is shown in SEQ ID NO:1.
Human TACE was found to be a type I transmembrane protein of 824 amino acids, including
a N-terminal 17 amino acid signal peptide. The signal peptide is followed by an extracellular
domain of 654 amino acids, a 23 amino acid transmembrane domain and a 130 amino acid
cytoplasmic domain. An alternate spliced variant was cloned and sequenced and found
to contain the same amino acid sequence as TACE, except that a 50 bp fragment is deleted
at the 5' end of the cytoplasmic domain, thus shifting the reading frame to encode
a six amino acid cytoplasmic domain. The amino acid sequence of this variant is shown
in SEQ ID NO:4, with the cDNA shown in SEQ ID NO:3.
EXAMPLE 4
Preparation of Antibodies Against TACE
[0095] This Example describes a method for generating monoclonal antibodies against TACE.
Balb/c mice are injected intraperitoneally on two occasions at 3 week intervals with
10 ug of isolated and purified TACE of Example 1 or peptides based on the amino acid
sequence of TACE in the presence of RIBI adjuvant (RIBI Corp., Hamilton, Montana).
Mouse sera are then assayed by conventional dot blot technique or antibody capture
(ABC) to determine which animal is best to fuse. Three weeks later, mice are given
an intrevenous boost of 3 ug of human TACE, or TACE peptide, suspended in sterile
PBS. Three days later, mice are sacrificed and spleen cells fused with Ag8.653 myeloma
cells (ATCC) following established protocols. Briefly, Ag8.653 cells are washed several
times in serum-free media and fused to mouse spleen cells at a ratio of three spleen
cells to one myeloma cell. The fusing agent is 50% PEG: 10% DMSO (Sigma). Fusion is
plated out into twenty 96-well flat bottom plates (Coming) containing HAT supplemented
DMEM media and allowed to grow for eight days. Supernatants from resultant hybridomas
are collected and added to a 96-well plate for 60 minutes that is first coated with
goat anti-mouse Ig. Following washes,
125I-TACE is added to each well, incubated for 60 minutes at room temperature, and washed
four times. Positive wells can be subsequently detected by autoradiography at -70
°C using Kodak X-Omat S film. Positive clones can be grown in bulk culture and supernatants
are subsequently purified over a Protein A column (Pharmacia).
SEQUENCE LISTING
[0096]
(1) GENERAL INFORMATION:
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(A) TELEPHONE: (206) 587-0430
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(2) INFORMATION FOR SEQ ID NO:1:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 2475 base pairs
(B) TYPE: nucleic acid
(C) STRANDEDNESS: single
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: cDNA to mRNA
(iii) HYPOTHETICAL: NO
(iv) ANTI-SENSE: NO
(ix) FEATURE:
(A) NAME/KEY: CDS
(B) LOCATION: 1 ..2472
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:1:




(2) INFORMATION FOR SEQ ID NO:2:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 824 amino acids
(B) TYPE: amino acid
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:2:




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(i) SEQUENCE CHARACTERISTICS:
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(ix) FEATURE:
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(xi) SEQUENCE DESCRIPTION: SEQ ID NO:3:




(2) INFORMATION FOR SEQ ID NO:4:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 698 amino acids
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(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: protein
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:4:



(2) INFORMATION FOR SEQ ID NO:5:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 8 amino acids
(B) TYPE: amino acid
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide
(xi) SEQUENCE DESCRIPTION: SEQ ID NO:5:

(2) INFORMATION FOR SEQ ID NO:6:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 17 base pairs
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(xi) SEQUENCE DESCRIPTION: SEQ ID NO:6:

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(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 17 base pairs
(B) TYPE: nucleic acid
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(xi) SEQUENCE DESCRIPTION: SEQ ID NO:7:

(2) INFORMATION FOR SEQ ID NO:8:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 6 amino acids
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(xi) SEQUENCE DESCRIPTION: SEQ ID NO:8.

(2) INFORMATION FOR SEQ ID NO:9:
(i) SEQUENCE CHARACTERISTICS:
(A) LENGTH: 11 amino acids
(B) TYPE: amino acid
(D) TOPOLOGY: linear
(ii) MOLECULE TYPE: peptide
(xi) SEQUENCE DESCRIPTION: SEO ID NO:9:
