ELECTROPHORESIS GELS CONTAINING SAMPLE WELLS WITH ENLARGED LOADING AREA

Description

[0001] This invention is directed to a novel structure for the gel used in submerged gel electrophoresis. It more particularly refers to such gel structures which enable more accurate and efficient substantially simultaneous introduction of a plurality of samples into a plurality of sample wells.

BACKGROUND OF THE INVENTION

[0002] In gel electrophoresis, a mixture of molecules present in a sample is resolved into its components either partially or completely by differential migration of the components in a gel. The gel can be run positioned vertically or horizontally, and in both formats the samples are usually loaded into sample wells. It is also possible to load the samples directly on a gel surface when that surface is exposed to air, that is, when the gel is run horizontally in a flat-bed mode. Loading the samples directly on the gel surface is not possible in submerged gel electrophoresis, which is known also as submarine electrophoresis, because the sample molecules would spread into the surrounding electrophoresis buffer.

[0003] The sample wells are typically formed by means of a comb, which is generally a rectangular piece 5 to 20 cm long, from 0.2 to 3 mm thick and a few centimeters high, and which has numerous protrusions separated by spaces. The comb, also known as sample well-former, is positioned in its place before gelation takes place. Following gelation the comb is removed, leaving cavities that are of complimentary size and shape. A top view of a gel with 12 sample wells is shown in Figure 1A. A side view of a similar gel is shown in Figure 1B. Electrophoretic migration occurs from left to right, as in all other figures below showing similar side views. This design is typical for majority of gels that are currently used for DNA analysis in the submerged gel electrophoresis mode. Prior to loading, a sample solution is mixed with another solution characterized by a high density, commonly known as loading buffer, Since the resulting density of the sample is higher than the density of the running buffer, the sample sinks to the bottom of the well when released from a pipette positioned above the well. In Figure 1 the loading area is equal to the sample well area, defined by the length and width of the well. If a sample is released anywhere outside that area, it will not enter the sample well.

[0004] Modifications of sample wells, and corresponding well-forming devices, are known in the prior art. Thus, US Patent 5,318,682 by Singer describes combs having protrusions of trapezoid shape, which produce sample wells that are wider at the top than at the bottom. This design allows closer spacing of sample wells, and thus makes possible the analysis of a larger number of samples than is possible with rectangular protrusions. Another modification is described in US Patent 4,795,541 by Hurd et al. With that modification, a large sample volume can be applied even to very thin gels.

[0005] Sample wells of novel design for vertical gels have been disclosed in US Patent 5,304,292 by Jacobs et al. Known are also devices that circumvent the use of sample wells. For example, US Patent 5,464,515 by Bellon discloses a device which contains a porous material able to absorb sample molecules prior to loading the samples onto a gel. The absorbed molecules migrate from the porous material to the gel in the electric field. Another way of loading multiple samples simultaneously is disclosed in PCT WO 95/20155 Patent Application by Williams.

[0006] The modifications described above have been worked out in order to address specific limitations, or improve certain features, of the manner in which samples are loaded to electrophoresis gels. The ease of sample loading becomes an important issue when many samples have to be processed. Gels with 50 and 100 sample wells are available from Guest Elchrom Scientific under the name Wide Mini S-50 and Wide Mini S-100 gels. These gels were developed for high-throughput applications, and their wells are positioned in 25-well rows. Samples are best applied with a 12-channel pipette, such that alternate wells are filled with one pipetting stroke. Experience has shown that some operators are not always able to deliver all 12 samples precisely to corresponding sample wells without spills into adjacent wells or onto the gel surface. Positioning of 12 pipette tips precisely over 12 alternating wells requires that the operator has steady hands. Even then a problem arises when any one of the 12 pipette tips is not perfectly straight.

[0007] Another type of spill is related to PCR samples that have been overlaid with oil. To withdraw a portion of the sample for analysis, the pipette tip needs to pass through an oil layer. Traces of oil then always remain in the sample. Very often this oil does not allow smooth displacement of the sample from the pipette tip into the well. Sometimes the oil causes formation of a "sample bubble" at the pipette tip, which, after bursting, disperses the sample over a wide area.

[0008] Yet another source of spills exists during loading of samples onto the gels that are run in submarine mode at a high temperature, for example at 55°C. A part of the sample is often prematurely ejected due to expansion of the air inside the pipette tip after the tip has been placed in the warm running buffer. Regardless of the cause of spills, when molecules from the spilled sample enter the gel, they are subsequently detected as additional bands. Such bands complicate evaluation of the band pattern, and if not recognized, may lead to incorrect interpretation of the experimental results.

[0009] One evident way to make sample loading easier is to increase the width and/or length of the wells. However, this approach is associated with serious drawbacks. Thus, the larger the sample wells are, the smaller is the number of samples that can be run on a given gel, making the cost of analysis higher. Moreover, if a multichannel pipette is to be used for sample loading, then sample wells must be spaced according to the spaces which exist between pipette tips. The tips are 9 mm apart in standard multichannel pipettes, so that the distance between the middle of each two adjacent wells must be either 9 mm, for filling each well, or 4.5 mm, for filling alternate wells with one pipetting stroke. Two adjacent wells are usually spaced 1 to 2 mm apart. These dimensions impose a strict limit on the choice of possible lengths of sample wells. On the other hand, increasing the width of sample wells is associated with worsening of resolution. The resolution is related to the width of separated bands, and sharp bands are possible only when molecules enter the gel in a narrow starting zone. In the absence of a stacking gel and a discontinuous buffer system, typical for submerged gel electrophoresis, a narrow starting zone will be achieved only if mobilities of the sample molecules are greatly reduced as they enter the gel. For small molecules, and for low solids content gels, the difference between free mobility and the mobility in a gel is small. Therefore, the width of the starting zone is directly related to the width of the sample well. Consequently, the resolution will be worse in a gel with wide sample wells than in a gel with narrow sample wells, keeping all other parameters constant. In the practice, a compromise is found between band sharpness, the volume that can be loaded into a sample well, and the ease of sample loading.

[0010] It has now been found that sample loading can be made easier by a new design of sample wells. With the new design the loading area is enlarged without concomitant increase of the length or width of the sample well. The modification is particularly suitable for gels that are run in the submerged gel electrophoresis mode. The novel design is especially advantageous when loading samples with a multichannel pipette.

OBJECTIVES OF THE INVENTION

[0011] It is an objective of the present invention to provide a gel containing sample wells with enlarged loading area.

[0012] Another objective is the provision of a comb of such a shape that it produces sample wells having an extended loading area.

[0013] It is a further objective of the present invention to provide a gel casting cassette which possesses a comb that produces sample wells with an extended loading area.

[0014] It is also an objective of the present invention to provide an improved method of gel electrophoresis, where the improvement is related to easier sample loading and fewer problems due to sample spills, particularly during loading.

[0015] Other objectives will become more apparent when the present specification is read in conjunction with appended figures.

BRIEF DESCRIPTION OF THE DRAWING

[0016] 

Figure 1A

is a top view of a gel with sample wells having a design that is common in the prior art;

Figure 1B

is a side view of a sample well that is characteristic of prior art designs;

Figure 2A

shows a top view of a gel according to one aspect of this invention with sample wells of enlarged loading areas;

Figure 2B

is a side view of the gel of Figure 2A;

Figure 3A

depicts a top view of a gel according to another aspect of this invention containing wells with enlarged loading areas formed on an elevated gel segment;

Figure 3B

is a side view of the sample well with enlarged loading area of Figure 3A;

Figure 3C

is another side view of the sample wells of Figure 3A with enlarged loading areas;

Figure 4A

is a side view of another sample well, according to another aspect of this invention, with enlarged loading areas and having a slanted bottom;

Figure 4B

shows the same well together with designation of various distances and angles discussed in the instant specification;

Figure 5A

is a schematic representation of a drill used for enlarging a top portion of a comb to form the desired elevated gel portions between sample wells of the shape shown in Figure 3C;

Figure 5B

is a schematic representation of a drill used for enlarging a top portion of a comb to form the desired elevated gel portions at the rear and at the front of the sample wells, and also on the left side of the first and on the right of the last well as depicted in Figure 3A and 3B;

Figure 6

is side view of a gel, according to another aspect of this invention, with a sample well having an enlarged loading area, in which a front part of the elevated gel segment is curved;

Figure 7A

is a schematic side view of a comb that can be placed into a casting frame to form sample wells of enlarged loading area as described in the specification;

Figure 7B

is a schematic side view of the left end of the comb of Figure 7A;

Figure 7C

is a top view of a gel, according to another aspect of this invention, containing sample wells with enlarged loading areas formed by a removable comb of the design shown in Figures 7A and 7B.

BRIEF DESCRIPTION OF THE INVENTION

[0017] In accord with fulfilling these objects, one aspect of this invention resides in a gel having a novel sample well design which is particularly well suited to use where a plurality of samples wells are intended to be filled substantially simultaneously. This is of particular value for employment in submerged gel electrophoresis. The novel sample well design of this invention provides an additional segment of gel above the nominal height of gel conventionally used for submerged gel electrophoresis. In the conventional gel structure, the sample wells have opposite walls that are generally parallel to each other. The conventional walls of sample wells are substantially completely vertical. In accord with this invention, the additional gel segment added above the conventional height of the gel has at least an upper part of its front wall that is disposed at an angle, of less than 90°, with respect to the substantially vertical lower front wall part. The angle of this upper part of at least the front wall is such that sample that is initially deposited on it will slide down and lodge in the area where the front wall is substantially vertical. However, if the sample well is overfilled, or if any portion of the sample remains in the vicinity of the upper, non-vertical, part of the front wall, it will migrate only through the additional upper gel segment and will not interfere with the separation of the bands relative to the portion of the sample in the bottom of the sample well.

DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS

[0018] One possibility of having a gel with an increased loading area, without increasing the width of the sample zone, is shown in Figure 2A (top view) and Figure 2B (side view). The upper part of the front and rear walls of the sample well are slanted, so that the sample loading area is larger. The sample which is pipetted over the slanted area will slide down into the well due to its high density. Sample loading is thus easier. This design, however, is associated with several drawbacks. First, the useful volume of the sample that can be placed in the well is reduced, and is equal to the vertical part of the front wall of the well. Second, filling the well to a level above the vertical portion will result in double bands after recording from above, because sample molecules entering the gel through the slanted portion will migrate ahead of the molecules entering the gel through the vertical portion. Third, even without overfilling, if after loading any sample remains on the slanted area, a weak band may be visible in front of a major one. Due to these drawbacks, the well configuration shown in Figure 2A and Figure 2B cannot be considered as an improvement over the configuration shown in Figures 1A and 1B.

[0019] A new design which does not suffer from the above drawbacks is shown in Figure 3A (top view), Figure 3B (side view), and Figure 3C (another side view). In this configuration of sample wells, the gel part with an enlarged loading area is elevated in relation to the rest of the gel. As can be seen from Figure 3B, the vertical portion of the sample well is now equal to the desired gel thickness. Therefore, there is no reduction in the useful volume that can be loaded into the sample well. The vertical part of the front wall could be extended upwards, but that would not increase the useful volume of the well. In the case of overfilling, when the sample level reaches the slanted portion of the sample well, there will be no double bands. Those molecules which enter the gel from the slanted area of the front wall will migrate only through the elevated part of the gel, and will exit at the opposite slanted side. The same will happen with any sample molecules that may accidentally remain on or in the vicinity of the slanted area after loading the well.

[0020] A modification of the well design is shown in Figure 4A, where the bottom of the well is slanted such that the back vertical side becomes shorter. The preferable value for the angle β (Figure 4B) is from 2° to 30°, more preferable from 5° to 15°, and the optimal value is about 10°. The advantages of the wells with slanted bottoms include easier removal of the comb, better entry of sample molecules, and better stability of the gel layer between the gel support and the sample well. In other modifications, sample wells can occupy a larger or a smaller portion of the gel thickness compared to the portion shown on the presented figures. The bottom of the well can be also curved, but the curved bottom must terminate higher on the rear side than on the front, so that molecules being analysed enter the gel only through the front wall and not through the curved part of the bottom. While it is preferable to have at least a part of the front and rear walls of the well vertical, that is not necessary as long as any declination from vertical still allows removal of the comb after gelation.

[0021] Gels used for submerged gel electrophoresis are usually 3 to 5 mm thick, but thinner or thicker gels can be used as well. A larger sample volume can be applied to a thicker gel, but more gel material is needed for its preparation. Furthermore, the staining-destaining process takes more time and background staining is stronger with thicker gels. These facts must be considered when choosing an appropriate gel thickness. As mentioned above, the width of the sample well can be varied, but in most cases it will be from 0.5 to 3 mm, preferentially from 0.8 to 1.5 mm on typical gels that are from 4 cm to 20 cm long. On shorter gels, it may be advantageous to have wells of a smaller width. When the gel is 3 mm thick and the sample well 1.5 mm wide, then the ratio between the gel thickness and the sample well width is 2. This relative proportion is displayed in Figures 1-4. When the angle of the slanted area α is 30° (Figure 4B), then the height d of the elevated part of the gel which forms the extended loading area (Figure 4B) is 0.6 mm. That is only a 20% increase in the gel thickness. The width of the loading area has increased 1 mm on each side, so that it is now 3.5 mm. That represents 230% larger width over which the sample can be released, making sample loading easier, which is the primary object of this invention.

[0022] Various values can be chosen for the angle α (Figure 4B). It is important that the angle is sufficiently steep so that the sample released on the slanted area slides down into the sample well. On the other hand, the steeper the angle, the larger is the height d of the elevated gel part for a given enlargement of the loading width. The height d should not be large, because then more gel material would be needed for casting the gel, and the elevated gel portion may cause problems in blotting. Blotting refers to the process by which the separated molecules are transferred from a gel to a membrane placed in direct contact with gel surface. Any unevenness of the gel surface may cause problems due to poor contact with the membrane, or due to uneven pressure when the membrane is placed on the other side of the gel which is pressed into a blotting cassette. Based on the above considerations, suitable values for the angle α are from about 10° to 60°, and the optimal values are between about 15° and 45°. An angle α of 30° is shown in Figures 4A and 4B.

[0023] In Figure 4B, the width A of the flat part of the elevated gel segment can vary, taking account of the considerations already put forward. In fact, the length can be zero, so that the elevated portion ends with a sharp peak. That design is less desirable owing to less favourable mechanical stability, which is especially important for packaging and transportation of precast gels.

[0024] In Figure 3C, the elevated portion between sample wells has a height that is equal to the height of the elevated portion in the front and the rear of the sample wells. The elevated part ends with a peak (Figure 3C). Further, the angle of the slanted surfaces between sample wells is equal to an angle of 30°. It should be noted that this angle can be chosen different from α, and that there is no requirement that the angle cannot be 90°. With vertical extension between sample wells, however, the loading area would not be extended at the well length.

[0025] One advantage of the design shown in Figures 3 and 4 is that manufacturing of the complimentary combs is possible by precision drilling. Only two drills, schematically shown in Figure 5, are necessary. The drill shown in Figure 5A is used to form the elevated portion between sample wells. The drill of Figure 5B is used to create the elevated gel portion in the front and at the rear of the sample wells, and also on the left and on the right of the first and the last well, respectively. The manufacturing is done by conventional methods, and the drills can be made of metal or diamond.

[0026] The elevated gel portion does not have to contain sharp edges. A desired enlargement of the loading area can be formed also with curved gel surface, such as shown in Figure 6. This, or a similar, configuration may be preferable when the combs are produced by a manufacturing method other than drilling, such as injection moulding. The combination of injection moulding and precision drilling may be preferred in some cases. Other modifications are also possible. For example, the front and the rear slanted surfaces may have different heights or shapes, as shown in Figure 6. Moreover, the elevated part at the rear of the sample well can be omitted. That would reduce the enlarged loading area by one half, but some other advantages mentioned above would remain. Furthermore, the elevated portion of the gel can be positioned differently from the position depicted on Figure 3A. It can extend up to the end of the left and right gel sides, and it does not need to start at the edge of the rear end of the gel, as shown in Figure 3B.

[0027] The gels containing sample wells of the present invention can be formed in a cassette with the comb representing an integral, non-removable part of the cassette. The cassette may also have walls that determine the thickness of the gel. Alternatively, the devices which determine the thickness and overall size of the gel may be physically separated, or separable, from the comb. In practice, the combs are usually made of plastic, but other materials that do not interfere with gel formation can also be used. Suitable plastic materials include, but are not limited to, plexiglass (polymethyl methacrylate) , delrin (polyformaldehyde), and teflon (polytetrafluoroethylene). A schematic side view of a removable comb is shown in Figure 7A. The shape and size of the comb are fully complimentary to the shape and size of the sample well of Figure 3. Conventional means to fix the comb at desired gel height are not shown. The comb may contain means that improve its smooth removal from the gel. For example, positioning two screws vertically, one at the right and the other at the left end of the comb, and turning them against a base on which the comb rests, affects smooth lifting of the comb.

[0028] Another side view of a portion of the comb is displayed in Figure 7B. With a comb of this design, the elevated gel part will have a different form from that shown in Figure 3A on the left of the first well, and also on the right of the last well, as shown in Figure 7C. This change allows for better escape of the air during pouring of the gel solution. For the same reason, it is advantageous to keep the casting tray slightly tilted during pouring, and then place it flat for gelation. The volume of the solution should be such that its level comes approximately to the height G (Figure 7A). In practice, the level will often be slightly higher or lower when agarose gels are cast, due to evaporation of water from the warm gel solution. During gelation the upper gel surface may be covered to prevent evaporation or contact with the air. This surface may contain other elevations or depressions if desired, but in most cases the only elevation will be the one used to create the wells with enlarged loading area.

[0029] The number of wells that are formed with a comb of present invention can vary from one, for preparative work, to any other number that is required for a particular application. The gel size is not restricted in any way. The present design is most beneficial for the gels that are run in the submerged mode, but sample wells of the present configuration can also be formed on the gels that are used for flat-bed, not submerged, electrophoresis, which are also run horizontally.

[0030] The gels presently in use for electrophoresis can be prepared by different processes, including polymerization, temperature-induced gelation, and chemical cross-linking simultaneous with gelation. The sample wells with enlarged loading area described herein can be formed from any suitable gel, regardless of the process by which the gelation takes place.

EXAMPLE OF THE PRACTICE OF THE INVENTION

Example 1.

[0031] Preparation of a gel having sample wells with enlarged loading area, and use of such a gel in electrophoresis.

[0032] Using two drills of the shape shown in Figure 5, a comb with thirteen protrusions was drilled in one part of a moulded plastic cassette. The length of each sample well was 7.5 mm, the width 1.5 mm, and the height about 2.6 mm, with bottom of the well slanted by about 10 degrees as shown in Figure 4A. The volume of the sample that can be filled in the vertical part of the sample well is thus about 30 µl, neglecting a slight distortion of the well following comb removal. The gel was prepared in the cassette by cross-linking 1% agarose with 1,4-butanediol diglycidylether, as described in US Patent 5,371,208. Following removal of the cross-linking reaction byproducts and equilibration against 30 mM TAE buffer, the gel was equilibrated with 0.5 µg/ml ethidium bromide in the same buffer. Identical amounts of a DNA marker (1 kb ladder, Life Technologies) was loaded in different final volumes, including 5 µl, 10 µl, 15 µl, 20 µl, 25 µl, 30 µl, 35 µl, 40 µl, 45 µl and 50 µl. With the last two volumes, spilling of the sample was observed on all sides of corresponding sample wells, indicating that sample volume was more than sufficient for filling the vertical and the slanted part of the wells. The gel was run in the TAE-EtBr buffer at 10 V/cm for 25 min at 20°C in Elchrom's SEA 2000 apparatus. Following photography, no difference in the sharpness of bands could be observed between the lanes, and no double bands were visible. This result indicates that DNA molecules which entered the gel through the slanted part of the front wall have migrated out at the other side of the elevated gel segment.

[0033] The present invention is considered to be most beneficial;y used in connection with submerged gel electrophoresis, which is used to analyse different types of molecules. They most frequently include biological macromolecules, in particular nucleic acids. However, proteins and other macromolecules can also be more easily loaded onto gels having sample wells of the configuration described in this invention.

[0034] It is to be understood that the invention is not limited to the illustrations described and shown herein, which are deemed to be merely illustrative of the best modes of carrying out the invention, and which are susceptible of modification of form, size and details of operation. The invention is rather intended to encompass all such modifications which are within its scope as defined by the claims.

Claims

1. A gel, suitable for use in electrophoresis in a horizontal mode, containing at least one sample well with an enlarged loading area through which sample molecules can be loaded, where the sample well is defined by a front wall, a rear wall, two side walls and a bottom, and which gel has a nominal height, wherein:

a first segment of said gel proximate to, surrounding and defining a lower portion of said sample well extends upwardly to a nominal height;

a second segment of said gel proximate to, surrounding and defining an upper portion of said sample well is elevated above said nominal height;

said upper portion of said sample well, within said area of elevated gel, is a loading area which has an enlarged cross section in relation to the cross section of said lower portion of said sample well;

at least the front wall of said sample well comprises an upper non-vertical part, corresponding to said upper portion, and a lower substantially vertical part corresponding to said lower portion, said non-vertical upper part extending at an angle less than 90 degrees with respect to said substantially vertical part, wherein said angle is sufficiently large to allow a sample deposited on said upper part to slide down, by the force of gravity, said non-vertical part into said lower portion of said sample well; and

   wherein said substantially vertical part and said upper non-vertical part of said sample well front wall have a relationship to each other such that sample molecules deposited in said upper portion of said sample well, when subjected to an electric field sufficient for electrophoresis, enter the gel through the non-vertical part of said front wall and migrate through and out of the portion of said gel segment that is elevated with respect to said nominal height.

2. A gel of claim 1, wherein the rear wall of the sample well also comprises a substantially vertical part and a non-vertical part.

3. A gel of claim 2, wherein the non-vertical parts of said front and back walls are at the same angle with respect to the substantially vertical portions thereof.

4. A gel of claim 2, wherein the non-vertical parts of said front and back walls are at substantially different angles with respect to the substantially vertical portions thereof.

5. A gel of claim 1, wherein the front wall and back walls have different shapes.

6. A gel of claim 1, wherein at least one of the non-vertical parts is curved.

7. A gel of claim 1, wherein the side walls of the sample well consist of a lower substantially vertical part and an upper non-vertical part.

8. A gel of claim 7, wherein the angle between the non-vertical part and the substantially vertical part of at least one side wall is substantially identical to the angle between the non-vertical part and the substantially vertical part of the front wall.

9. A gel of claim 3, wherein the angle between the substantially vertical part and the non-vertical part is from about 15 degrees to about 45 degrees.

10. A gel of claim 4, wherein the angle between the susbtantially vertical part and the non-vertical part is from about 15 degrees to about 45 degrees.

11. A gel of claim 8, wherein the angle between the susbtantially vertical part and the non-vertical part is from about 15 degrees to about 45 degrees.

12. A gel of claim 7, wherein at least one of the side walls is curved.

13. A gel of claim 1, wherein bottom of the sample well is slanted.

14. A gel of claim 13, wherein the slant angle of the bottom is about 5 to 20 degrees.

15. A comb, for use in producing a gel comprising at least one sample well comprising a lower smaller cross sectional area ,which has a height substantially corresponding to a nominal height of a gel which is used for electrophoresis, and an upper larger cross sectional area, through which sample well sample molecules can be loaded onto said gel for electrophoresis in a horizontal mode, wherein said comb comprises:

a solid protrusion defining a front wall, a rear wall, two side walls and a bottom;

at least said front wall comprises a lower substantially vertical part, which corresponds in height substantially to said nominal gel height, and an upper non-vertical part which extends at an angle smaller than 90 degrees from said substantially vertical part of said wall forming a portion of said comb which is above said nominal gel height;

   wherein the angle between said substantially vertical part and said non-vertical part is such that upon removal of the comb from the gel, a sample deposited on the larger cross sectional area of the sample well slides down to the smaller cross sectional area of said sample well.

16. A cassette for casting a gel, comprising a container and a comb as claimed in claim 15.

17. A method of electrophoresis using a gel, containing a plurality of sample wells, in a horizontal mode, comprising:

submerging said gel in a buffer;

feeding samples, comprising molecules of different molecular weights, to be electrophoresed into a plurality of said sample wells;

subjecting said gel to an electrophoresing voltage and current, whereby separating said molecules according to their molecular weights, size or charge;

   wherein
   at least one of said sample wells comprises:

a lower area, of smaller cross section which extends to a nominal height that is conventional for submerged gel electrophoresis operations; and

an upper area, of larger cross section, which extends above said nominal height;

   wherein said sample well comprises a front wall, a back wall and side walls;
   said front wall comprising:

a lower part that is substantially vertical and extends to said nominal height, and

an upper, non-vertical, part that is disposed at an angle of less than 90° with respect to said lower substantially vertical part;

forming said angle such that a sample initially deposited on said non-vertical part will slide down into the area of said sample well defined by said substantially vertical part of said front wall; and

electrophoresing a remaining portion of said sample which is disposed above said nominal height during said electrophoresis through said non-vertical part of said front wall, through said gel segment that is above said nominal height, and out of said gel segment that is above said nominal height;

   whereby enabling more accurate disposition of a plurality of samples into a plurality of sample wells and therefore more accurate electrophoretic separation of the constituents of said sample.

Ansprüche

1. Gel, welches zur Verwendung bei der Horizontal-Elektrophorese geeignet ist, enthält zumindest eine Probentasche mit einem vergrösserten Ladebereich, durch welche Probenmoleküle eingebracht werden können, wobei die Probentasche durch eine Vorderwand, eine Rückwand, zwei Seitenwände und einen Boden definiert ist, und wobei das Gel eine Nominalhöhe aufweist, wobei:

sich ein erster Teil des Gels, welches einen unteren Bereich der Probentasche definiert, umgibt und nächstliegend dazu ist, bis zu einer Nominalhöhe nach oben erstreckt;

sich ein zweiter Teil des Gels, welches einen oberen Bereich der Probentasche definiert, umgibt und nächstliegend dazu ist, über die Nominalhöhe erhebt;

der obere Bereich der Probentasche, innerhalb des Bereiches des erhöhten Gels, ein Ladebereich ist, welcher im Verhältnis zu dem Querschnitt des unteren Bereiches der Probentasche einen vergrösserten Querschnitt aufweist;

zumindest die Vorderwand der Probentasche einen oberen, nicht vertikalen Abschnitt, welcher dem oberen Bereich entspricht, und einen unteren, im wesentlichen vertikalen Abschnitt umfasst, welcher dem unteren Bereich entspricht, wobei sich der nicht vertikale obere Abschnitt hinsichtlich des im wesentlichen vertikalen Abschnittes in einem Winkel kleiner als 90° erstreckt, wobei der Winkel ausreichend gross ist, um es einer an dem oberen Abschnitt abgelegten Probe zu erlauben, entlang dem nicht vertikalen Abschnitt mittels Schwerkraft nach unten in den unteren Abschnitt der Probentasche zu gleiten;

und
wobei der im wesentlichen vertikale Abschnitt und der obere, nicht vertikale Abschnitt der Vorderwand der Probentasche miteinander in einem Verhältnis stehen, so dass Probenmoleküle, welche in dem oberen Bereich der Probentasche abgelegt sind, durch den nicht vertikalen Abschnitt der Vorderwand in das Gel eindringen, wenn sie einem elektrischen Feld, für Elektrophorese ausreichend, ausgesetzt werden, und durch und aus dem Bereich des Gelteils wandern, welches hinsichtlich der Nominalhöhe erhöht ist.

2. Gel nach Anspruch 1, wobei die Rückwand der Probentasche ferner einen im wesentlichen vertikalen Abschnitt und einen nicht vertikalen Abschnitt umfasst.

3. Gel nach Anspruch 2, wobei die nicht vertikalen Abschnitte der Vorder- und Rückwände in denselben Winkel hinsichtlich der im wesentlichen vertikalen Abschnitte verlaufen.

4. Gel nach Anspruch 2, wobei die nicht vertikalen Abschnitte der Vorder- und Rückwand in im wesentlichen unterschiedlichen Winkeln hinsichtlich der im wesentlichen vertikalen Abschnitte verlaufen.

5. Gel nach Anspruch 1, wobei die Vorderwand und die Rückwände unterschiedliche Formen aufweisen.

6. Gel nach Anspruch 1, wobei zumindest einer der nicht vertikalen Abschnitte gewölbt ist.

7. Gel nach Anspruch 1, wobei die Seitenwände der Probentasche aus einem unteren, im wesentlichen vertikalen Abschnitt und einem oberen, nicht vertikalen Abschnitt bestehen.

8. Gel nach Anspruch 7, wobei der Winkel zwischen dem nicht vertikalen Abschnitt und dem im wesentlichen vertikalen Abschnitt zumindest einer Seitenwand mit dem Winkel zwischen dem nicht vertikalen Abschnitt und dem im wesentlichen vertikalen Abschnitt der Vorderwand im wesentlichen identisch ist.

9. Gel nach Anspruch 3, wobei der Winkel zwischen dem im wesentlichen vertikalen Abschnitt und dem nicht vertikalen Abschnitt zwischen ungefähr 15° und ungefähr 45° liegt.

10. Gel nach Anspruch 4, wobei der Winkel zwischen dem im wesentlichen vertikalen Abschnitt und dem nicht vertikalen Abschnitt zwischen ungefähr 15° und ungefähr 45° liegt.

11. Gel nach Anspruch 8, wobei der Winkel zwischen dem im wesentlichen vertikalen Abschnitt und dem nicht vertikalen Abschnitt zwischen ungefähr 15° und ungefähr 45° liegt.

12. Gel nach Anspruch 7, wobei zumindest eine der Seitenwände gewölbt ist.

13. Gel nach Anspruch 1, wobei der Boden der Probentasche geneigt ist.

14. Gel nach Anspruch 13, wobei der Neigungswinkel des Bodens zwischen ungefähr 5° und 20° liegt.

15. Kamm zur Verwendung bei der Herstellung eines Gels, welches zumindest eine Probentasche umfasst, die einen unteren Bereich mit einem geringen Querschnitt aufweist, welcher eine Höhe aufweist, die im wesentlichen einer Nominalhöhe eines Gels entspricht, das für die Elektrophorese verwendet wird, und einen oberen Bereich mit einem grösseren Querschnitt, durch welche Probentasche die Probenmoleküle für Horizontal-Elektrophorese auf das Gel geladen werden können, wobei der Kamm folgendes umfasst:

einen festen Vorsprung, welcher eine Vorderwand, eine Rückwand, zwei Seitenwände und einen Boden definiert;

zumindest die Vorderwand umfasst einen unteren, im wesentlichen vertikalen Abschnitt, welcher in seiner Höhe im wesentlichen der Nominalhöhe des Gels entspricht, und einen oberen, nicht vertikalen Abschnitt, welcher sich in einem Winkel von weniger als 90° von dem im wesentlichen vertikalen Abschnitt der Wand erstreckt, wodurch ein Bereich des Kammes gebildet wird, welcher über der Nominalhöhe des Gels liegt;

wobei der Winkel zwischen dem im wesentlichen vertikalen Abschnitt und dem nicht vertikalen Abschnitt so ist, dass nach Entfernung des Kammes von dem Gel eine Probe, welche auf dem Bereich der Probentasche mit grösserem Querschnitt abgelegt wurde, in den Bereich mit geringerem Querschnitt der Probentasche nach unten gleitet.

16. Kassette zum Formen eines Gels, welche einen Behälter und einen Kamm, wie in Anspruch 15 beansprucht, umfasst.

17. Horizontal-Elektrophoreseverfahren unter Verwendung eines Gels, welches eine Vielzahl von Probentaschen enthält, umfasst folgendes:

ein Eintauchen des Gels in einen Puffer;

das Zuführen von durch Elektrophorese zu behandelnde Proben, welche Moleküle mit unterschiedlichem Molekulargewicht umfassen, in eine Vielzahl von Probentaschen;

das Aussetzen des Gels einer elektrophoresischen Spannung und Stroms, wobei die Trennung der Moleküle gemäss ihres Molekulargewichtes, -grösse oder -ladung erfolgt;

wobei zumindest eine der Probentaschen folgendes umfasst:

einen unteren Bereich mit geringerem Querschnitt, welcher sich zu einer Nominalhöhe erstreckt, die für eingetauchte Gel-Elektrophoresevorgänge üblich ist; und

einen oberen Abschnitt mit grösserem Querschnitt, welcher sich über die Nominalhöhe erstreckt,

wobei die Probentasche eine Vorderwand, eine Rückwand und Seitenwände umfasst;
wobei die Vorderwand folgendes umfasst:

einen unteren Abschnitt, welcher im wesentlichen vertikal ist und sich zu der Nominalhöhe erstreckt; und

einen oberen, nicht vertikalen Abschnitt, welcher in einem Winkel von weniger als 90° hinsichtlich des unteren, im wesentlichen vertikalen Abschnittes angeordnet ist;

wodurch der Winkel so geformt wird, dass eine Probe, welche zunächst an dem nicht vertikalen Abschnitt abgelegt wurde, in den Bereich der Probentasche nach unten gleitet, welcher durch den im wesentlichen vertikalen Abschnitt der Vorderwand definiert wird; und

das Elektrophoresieren eines verbleibenden Teils der Probe, welcher während der Elektrophorese über der Nominalhöhe angeordnet ist, durch den nicht vertikalen Abschnitt der Vorderwand, durch das Gelteil, welches über der Nominalhöhe liegt, und aus dem Gelteil, welches über der Nominalhöhe liegt;

wodurch eine genauere Anordnung einer Vielzahl von Proben in einer Vielzahl von Probentaschen ermöglicht wird, und damit eine genauere elektrophoretische Trennung der Bestandteile der Probe.

Revendications

1. Gel qui convient pour être utilisé en électrophorèse en mode horizontal et qui contient au moins un puits à échantillon doté d'une zone agrandie de chargement par laquelle des molécules d'échantillon peuvent être chargées, le puits à échantillon étant délimité par une paroi avant, une paroi arrière, deux parois latérales et un fond, lequel gel présente une hauteur nominale, dans lequel :

un premier segment dudit gel, proche d'une partie inférieure dudit puits à échantillon, l'entourant et la délimitant, s'étend vers le haut jusqu'à une hauteur nominale,

un deuxième segment dudit gel, proche d'une partie supérieure dudit puits à échantillon, l'entourant et la délimitant, est situé à une hauteur supérieure à ladite hauteur nominale,

ladite partie supérieure dudit puits à échantillon située dans ladite zone rehaussée du gel est une zone de chargement qui présente une section transversale plus grande que la section transversale de ladite partie inférieure dudit puits à échantillon,

au moins la partie avant dudit puits à échantillon comprend une partie supérieure non verticale qui correspond à ladite partie supérieure et une partie inférieure essentiellement verticale qui correspond à ladite partie inférieure, ladite partie supérieure non verticale formant un angle inférieur à 90 degrés avec ladite partie essentieilement verticale, ledit angle étant suffisamment grand pour permettre à un échantillon déposé sur ladite partie supérieure de glisser par la force de la gravité le long de ladite partie non verticale pour pénétrer dans ladite partie inférieure dudit puits à échantillon et

ladite partie essentiellement verticale et ladite partie supérieure non verticale de ladite paroi avant du puits à échantillon présentent entre elles une relation telle que des molécules d'échantillon déposées dans ladite partie supérieure dudit puits à échantillon et soumises à un champ électrique suffisant pour permettre l'électrophorèse pénètrent dans le gel par la partie non verticale de ladite paroi avant et migrent à travers et hors de la partie dudit segment du gel qui est rehaussée par rapport à ladite hauteur nominale.

2. Gel selon la revendication 1, dans lequel la paroi arrière du puits à échantillon comprend également une partie essentiellement verticale et une partie non verticale.

3. Gel selon la revendication 2, dans lequel les parties non verticales de ladite paroi avant et de ladite paroi arrière forment le même angle avec leurs parties essentiellement verticales.

4. Gel selon la revendication 2, dans lequel les parties non verticales de ladite paroi avant et de ladite paroi arrière forment des angles essentiellement différents avec leurs parties essentiellement verticales.

5. Gel selon la revendication 1, dans lequel la paroi avant et la paroi arrière présentent des formes différentes.

6. Gel selon la revendication 1, dans lequel au moins l'une des parties non verticales est incurvée.

7. Gel selon la revendication 1, dans lequel les parois latérales du puits à échantillon sont constituées d'une partie inférieure essentiellement verticale et d'une partie supérieure non verticale.

8. Gel selon la revendication 7, dans lequel l'angle entre la partie non verticale et la partie essentiellement verticale d'au moins une paroi latérale est essentiellement identique à l'angle formé entre la partie non verticale et la partie essentiellement verticale de la paroi avant.

9. Gel selon la revendication 3, dans lequel l'angle entre la partie essentiellement verticale et la partie non verticale est compris entre environ 15 degrés et environ 45 degrés.

10. Gel selon la revendication 4, dans lequel l'angle entre la partie essentiellement verticale et la partie non verticale est compris entre environ 15 degrés et environ 45 degrés.

11. Gel selon la revendication 8, dans lequel l'angle entre la partie essentiellement verticale et la partie non verticale est compris entre environ 15 degrés et environ 45 degrés.

12. Gel selon la revendication 7, dans lequel au moins l'une des parois latérales est incurvée.

13. Gel selon la revendication 1, dans lequel le fond du puits à échantillon est incliné.

14. Gel selon la revendication 13, dans lequel l'angle d'inclinaison du fond est d'environ 5 à 20 degrés.

15. Peigne destiné à être utilisé pour la production d'un gel qui comprend au moins un puits à échantillon qui comprend une zone inférieure de plus petite section transversale dont la hauteur correspond essentiellement à la hauteur nominale d'un gel utilisé en électrophorèse et une zone supérieure de plus grande section transversale, des molécules d'échantillon pouvant être chargées sur ledit gel par ledit puits à échantillon en vue d'une électrophorèse en mode horizontal, ledit peigne comprenant :

une saillie massive qui délimite une paroi avant, une paroi arrière, deux parois latérales et un fond,

au moins ladite paroi avant comprenant une partie inférieure essentiellement verticale dont la hauteur correspond essentiellement à ladite hauteur nominale du gel et une partie supérieure non verticale qui forme un angle inférieur à 90 degrés avec ladite partie essentiellement verticale de ladite paroi, en formant une partie dudit peigne qui est située au-dessus de ladite hauteur nominale du gel,

l'angle entre ladite partie essentiellement verticale et ladite partie non verticale est tel que lorsque le peigne est enlevé du gel, un échantillon déposé sur la zone de plus grande section transversale du puits à échantillon glisse vers le bas et vers la zone de plus petite section transversale dudit puits à échantillon.

16. Cassette de coulée d'un gel qui comprend un récipient et un peigne selon la revendication 15.

17. Procédé d'électrophorèse en mode horizontal à l'aide d'un gel qui contient une pluralité de puits à échantillon, le procédé comprenant les étapes qui consistent à :

immerger ledit gel dans un tampon,

introduire dans une pluralité desdits puits à échantillon des échantillons qui comprennent des molécules de différents poids moléculaires, pour leur faire subir une électrophorèse,

soumettre ledit gel à une tension et un courant d'électrophorèse pour ainsi séparer lesdites molécules en fonction de leur poids moléculaire, de leur taille ou de leur charge,

dans lequel
   au moins l'un desdits puits à échantillon comprend
   une zone inférieure de plus petite section transversale qui s'étend jusqu'à une hauteur nominale classique pour des opérations d'électrophorèse sur gel immergé et
   une zone supérieure de plus grande section transversale qui s'étend au-dessus de ladite hauteur nominale,
   dans lequel ledit puits à échantillon comprend une paroi avant, une paroi arrière et des parois latérales,
   ladite paroi avant comprenant :

une partie inférieure qui est essentiellement verticale et qui s'étend jusqu'à ladite hauteur nominale et

une partie supérieure non verticale qui forme un angle inférieur à 90° avec ladite partie inférieure essentiellement verticale,

ledit angle étant formé de telle sorte qu'un échantillon initialement déposé sur ladite partie non verticale glisse vers le bas jusque dans la zone dudit puits à échantillon qui est définie par ladite partie essentiellement verticale de ladite paroi avant et

pendant ladite électrophorèse à travers ladite partie non verticale de ladite paroi avant, réaliser l'électrophorèse d'une partie restante dudit échantillon qui est déposé au-dessus de ladite hauteur nominale à travers ledit segment de gel qui est situé au-dessus de ladite hauteur nominale et hors dudit segment de gel qui est situé au-dessus de ladite hauteur nominale,

ce qui permet un dépôt plus précis d'une pluralité d'échantillons dans une pluralité de puits à échantillon et ainsi une séparation par électrophorèse plus précise des constituants dudit échantillon.

Drawing