BACKGROUND OF THE INVENTION
Field of the Invention
[0001] The present invention relates generally to adenoviral vectors and adenoviral gene
therapy. More specifically, the present invention relates to an infectivity-enhanced
conditionally replicative adenovirus.
Description of the Related Art
[0002] Surgery, chemotherapy and radiotherapy constitute the conventional therapies in clinical
use to treat cancer. These therapies have produced a high rate of cure in early-stage
cancer, but most late-stage cancers remain incurable because they cannot be resected
or the dose of radiation or chemotherapy administered is limited by toxicity to normal
tissues. An alternative promising approach is the transfer of genetic material to
tumor or normal cells as a new therapy itself or to increase the therapeutic index
of the existing conventional therapies [1]. In this regard, three main strategies
have been developed to accomplish cancer gene therapy: potentiating immune responses
against tumors, eliciting direct toxicity to tumors, and compensating the molecular
lesions of tumor cells [2].
[0003] To achieve the high level of gene transfer required in most cancer gene therapy applications,
several viral and non-viral vectors have been designed [13]. Adenoviral vectors have
been used preferentially over other viral and non-viral vectors for several reasons,
including infectivity of epithelial cells, high titers,
in vivo stability, high levels of expression of the transgene, gene-carrying capability,
expression in non-dividing cells, and lack of integration of the virus into the genome.
In most of the adenoviral vectors used in cancer gene therapy, the transgene substitutes
for the early 1 region (E1) of the virus. The E1 region contains the adenoviral genes
expressed first in the infectious stage and controls expression of the other viral
genes. The early region 3 (E3) gene codes for proteins that block a host's immune
response to viral-infected cells and is also usually deleted in vectors used for cancer
gene therapy, particularly in immunopotentiating strategies.
[0004] E1-substituted, E3-deleted vectors can carry up to 8 kb of non-viral DNA, which is
sufficient for most gene therapy applications. E1-substituted, E3-deleted vectors
are propagated in packaging cell lines that transcomplement their E1-defectiveness,
with production yields of up to 10,000 virion particles per infected cell, depending
upon the transgene and its level of expression in the packaging cell. Not all of the
viral particles are able to transduce cells or to replicate in the packaging cell
line, so bioactivity of a particular vector has been defined as the ratio of functional
particles to total particles. This bioactivity varies from 1/10 to 1/1000, depending
not only upon the vector, but also upon the methods of purification and quantification
[15]. The titer used is the concentration of functional particles, which can be as
high as 10
12 per milliliter.
[0005] One problem encountered when propagating these vectors to high titers is the recombination
of vector sequences with the E1 sequences present in the packaging cell line, thereby
producing replication-competent adenoviruses (RCA). This problem has been solved by
using packaging cell lines where the E1 gene does not overlap with the vector sequences
[16].
[0006] The current generation of adenoviral vectors are limited in their use for cancer
gene therapy, primarily for three reasons: (1) the vectors are cleared by the reticuloendothelial
system, (2) the vectors are immunogenic and/or (3) the vectors infect normal cells.
The problem of filtration by the reticuloendothelial system cells, such as macrophages
of the spleen or Kupffer cells of the liver, affects adenoviral vectors as well as
other viral and non-viral vectors and limits their utility in intravascular administration
[19]. The early and late viral genes that remain in E1-E3 deleted vectors may also
be expressed at low, but sufficient enough levels such that the transduced cells are
recognized and lysed by the activated cytotoxic T lymphocytes. Additionally, a higher
viral dose must be injected to reach the entire tumor before a neutralizing immune
response develops. The major limitation then becomes the amount of vector that can
be safely administered, which will depend upon the capacity of the vector to affect
tumor cells without affecting normal cells.
[0007] The limitations of adenoviral vectors at the level of infectivity is two-fold. On
the one hand, human clinical trials with adenoviral vectors have demonstrated relatively
inefficient gene transfer
in vivo. This has been related to the paucity of the primary adenovirus receptor, coxsackie-adenovirus
receptor (CAR), on tumor cells relative to their cell line counterparts [20-23]. On
this basis, it has been proposed that gene delivery via CAR-independent pathways may
be required to circumvent this key aspect of tumor biology. On the other hand, adenoviral
vectors efficiently infect normal cells of many epithelia. This results in the expression
of the transgene in normal tissue cells with the consequent adverse effects. This
problem has been addressed by targeting adenoviral vectors to tumor cells at the level
of receptor interaction and transgene transcription.
[0008] Targeting adenoviral vectors to new receptors has been achieved by using conjugates
of antibodies and ligands, in which the antibody portion of the conjugate blocks the
interaction of the fiber with the CAR receptor and the ligand portion provides binding
for a novel receptor [20]. Receptor targeting has also been achieved by genetic modification
of the fiber [23-26]. Transcriptional targeting of adenoviral vectors has further
been demonstrated using tumor-antigen promoters or tissue-specific promoters to control
the expression of the transgene [27]. However, these promoters can lose their specificity
when inserted in the viral genome and, depending upon the level of toxicity of the
transgene, even low levels of expression can be detrimental to normal cells. Thus,
for cancer gene therapy, the major issues limiting the utility of adenoviral vectors
are the efficiency and specificity of the transduction.
[0009] The major limitation found in the use of adenoviral vectors in the clinical setting
is the number of tumor cells that remain unaffected by the transgene. A vector that
propagates specifically in tumor cells, results in lysis and subsequently allows for
transduction of neighbor cells by newly produced virions will increase the number
of tumor cells affected by the transgene [28]. A good replicative vector should be
weakly pathogenic or non-pathogenic to humans and should be tumor-selective [29].
Efforts have been aimed at improving the safety of replication-competent adenoviruses
with the goal of being able to administer much higher doses. One strategy is to transcomplement
the E1 defect with an E1-expression plasmid conjugated into the vector capsid [31],
which allows a single round of replication thereby producing a new E1-substituted
vector with the ability of local amplification and subsequent gene transduction.
[0010] Other strategies are designed to obtain vectors that replicate continuously and whose
progeny are also able to replicate, but are incapable of propagating in normal cell
See e.g,
Alemany R et al (1994), Experimental cell research, vol 252, pp.1-12.. In this regard, two approaches have been described that render adenovirus propagation
selective for tumor cells: (1) deletions, and (2) promoter regulation [30]. Adenoviral
mutants unable to inactivate p53 propagate poorly in cells expressing p53 but efficiently
in tumor cells where p53 is already inactive. Based upon this strategy, an adenovirus
mutant in which the E1b-55k viral protein was deleted and was unable to bind to p53
was effective in eliminating tumors in preclinical models and is in clinical trials
[32]. A mutant oncolytic adenovirus targeting the retinoblastoma (Rb) pathway was
also described
Fueyo J. et al (2000), oncogene, vol.19, pp.2-12) Controlling viral replication by substituting a viral promoter, such as the E1a
promoter, with a tumor associated-antigen promoter, such as the alpha-fetoprotein
promoter or the prostate antigen promoter, has been demonstrated [33], and specific
lysis of tumors transfected with an adenovirus vector expressing either of the above-mentioned
promoters was demonstrated in murine models.
[0011] Both approaches have limitations, however. The fact that other viral proteins besides
E1b 55K also interact with p53, and because p53 can be necessary for the active release
of virus in the later stages of infection may affect the specificity of the vector
[37,38]. Another caveat results from using E1a as the only controlled viral gene since
E1a-like activity has been found in many tumor cell lines [14,40]. Furthermore, the
actual specificity of the above-mentioned promoters for cancer cells, and the fact
that promoters inserted in the viral genome can lose their expression specificity,
are factors that hindered clinical applications of this approach [39].
[0012] Therefore, new methods are clearly needed to achieve more selective therapeutic effects
of replication-competent adenoviruses. For these vectors, in parallel to what has
been achieved with non-replicative vectors, modification of viral tropism could enhance
tumor transduction and tumor selectivity at the level of cell entry, and in this way,
realize the full potential of replicative vectors for cancer gene therapy.
[0013] The prior art is deficient in adenoviral vectors that are specific for a particular
cell type (i.e., do not infect other cell types) and that replicate with high efficiency
in only those particular cell types. The present invention fulfills this longstanding
need and desire in the art.
SUMMARY OF THE INVENTION
[0014] The invention in its broadest sense is as detailed in The independent claim.
[0015] Adenoviral vectors have been widely employed in cancer gene therapy. Their high titers,
structural stability, broad infectivity, high levels of transgene expression, and
lack of integration have contributed to the utility of this vector. In this regard,
adenoviral vectors has been used to transfer a variety of genes to treat cancer such
as cytokines, tumor suppresser genes, pro-drug converting genes, antisense RNAs and
ribozymes to inhibit the expression of oncogenes, antiangiogenic genes, etc. Despite
the promise of adenoviral vectors, results from experimental models and clinical trials
have been less than optimal.
[0016] Within this context, several specific limitations have been identified. One limitation
lies in the poor infectability of primary tumors due to low levels of the primary
adenovirus receptor CAR. A second limitation that particularly affects the efficiency
of replicative vectors is related to the lack of tumor-specific replication achieved
using promoters or mutations. The present invention describes A method to increase
adenovirus infectivity based upon modification of the virus tropism. The present invention
demonstrates that modification of the adenovirus fiber by genetic manipulation increases
infectivity of primary tumors several orders of magnitude due to CAR-independent gene
transfer. In addition, selective replication in tumors is described herein, and represents
a safe and effective means to lyse and transduce tumors. also described a strategy
based upon control of the expression of one or more essential early viral genes using
tumor-specific promoters.
[0017] It is a goal of the present invention to improve the infectivity and specificity
of conditional replicative vectors, thereby improving their therapeutic utility and
efficacy.
[0018] One object of the present invention is to provide adenoviral vectors that possess
enhanced infectivity to a specific cell type (i. e., that are not limited to CAR-dependent
cell entry) and that replicate with high efficiency in only those cell types.
[0019] In an embodiment of the present invention, there is provided an infectivity-enhanced
conditionally-replicative adenovirus. This adenovirus possesses enhanced infectivity
towards a specific cell type, which is accomplished by a modification or replacement
of the fiber of the adenovirus. The modification is accomplished by introducing a
ligand RGD Amino-acid sequence into the HI loop of the fiber knob Additionally, the
adenovirus has at least one conditionally regulated early gene, such that replication
of the adenovirus is limited to the specific cell type.
[0020] Also described is a method of enhanced-infectivity conditionally-replicative adenoviral
gene therapy in an individual in need of The fiber Knob domain may be from a different
subtype of adenoviruses. such treatment. This method comprises the steps of: administering
to an individual a therapeutic dose of an infectivity-enhanced conditionally-replicative
adenovirus. This adenovirus possesses enhanced infectivity towards a specific cell
type, which is accomplished by a modification or replacement of the fiber of the adenovirus.
The modification is accomplished by introducing a ligand RGD amino-acid sequence the
HI loop of the fiber knob The fiber knob domain may be from a different subtype of
adenoviruses. The adenovirus also has at least one conditionally regulate early gene,
such that replication of the adenovirus is regulate early gene, such that replication
of the adenovirus is limited to the specific cell type.
[0021] Other and further aspects, features, and advantages of the present invention will
be apparent from the following description of the presently preferred embodiments
of the invention. These embodiments are given for the purpose of disclosure.
BRIEF DESCRIPTION OF THE DRAWINGS
[0022] The appended drawings have been included herein so that the above-recited features,
advantages and objects of the invention will become clear and can be understood in
detail. These drawings form a part of the specification. It is to be noted, however,
that the appended drawings illustrate preferred embodiments of the invention and should
not be considered to limit the scope of the invention.
Figure 1 shows that an anti-knob Fab-FGF2 conjugate enhances cell transduction. Figure 1A shows that AdCMVluc (5x107 pfu) was preincubated with 1.44 µg of Fab or 1.94 µg of Fab-FGF2. SKOV3 cells (24,000
cells per well in 24-well plates) were infected with control vector or with the vector
complexes (MOI of 50). Inhibition was performed by adding a polyclonal anti-FGF2 to
the complex before infection. Luciferase activity in cell lysates was assayed 24 h
after infection. The mean of triplicate experiments is shown. Figure 1B shows that AdCMVLacZ was complexed with Fab-FGF2 conjugate as in Figure 1A. SKOV3 cell were infected with control vector (a, c) or complexed vector (b, d) at
MOI of 5 (a, b) or 50 (c, d) and stained with X-gal 24 h after infection.
Figure 2 shows that Fab-FGF2 retargeting augments in vivo therapeutic benefit of the AdCMVHSV-TK vector. Five days after i.p. inoculation of
2x107 SKOV3 cell in SCID mice, 2x108 or 2x109 pfu of AdCMVTK alone or complexed with FGF2 were injected i.p. Forty-eight h later,
half of the mice were treated with GCV (50 mg/kg body weight) for 14 days. Survival
was monitored daily.
Figure 3 shows the HI loop of the fiber as a domain to insert ligand for retargeting adenoviruses.
Figure 3A shows the knob trimer viewed along the three-fold symmetry axis(Reproduced from Xia
et al. [42]). Figure 3B shows the localization of targeting ligands within the fiber molecule.
Figure 4 shows adenovirus-mediated gene transfer to various human cell lines. 293 (Figure 4A), human vascular endothelial cells (HUVEC) (Figure 4B) or Rhabdomyosarcoma (RD) (Figure 4C) cells preincubated for 10 min at room temperature in medium containing recombinant
Ad5 fiber knob at 100 µg/ml were then exposed for 30 min at room temperature to AdCMVLuc
or Ad5lucRGD in DMEM/F12 at 1, 10 or 100 pfu/cell. The unbound virus was aspirated
and complete medium was added. After incubation at 37°C for 30 hours, the cells were
lysed and the luciferase activity in relative light units (rlu) was determined. Background
luciferase activities detected in mock infected cells were 261, 223, and 163 rlu for
293, HUVEC and RD cells, respectively. These activities were subtracted from all readings
obtained with the corresponding cell line. Each point represents the mean of three
determinations ± SD.
Figure 5 shows a comparison of the gene transfer efficiencies to cultured ovarian cancer cells
mediated by AdCMVLuc and Ad51ucRGD. Human ovarian cancer cells SKOV3.ip1 (Figure 5A) and OV-4 (Figure 5B) were transduced with AdCMVLuc or Ad51ucRGD at an MOI of 1 or 10 pfu/cell essentially
as described in Figure 4 for 293, HUVEC and RD cells. Recombinant Ad5 fiber knob protein
was added to cells prior to infection with the virus. Each data point is the average
of three independent measurements obtained in one experiment.
Figure 6 shows transduction of primary cells isolated from ascites obtained from ovarian cancer
patients. Cells isolated from ascites of two (Figure 6A and B) ovarian cancer patients were transduced with AdCMVLuc or Ad51ucRGD at MOI of 1 or
1 0 in the presence or absence of blocking Ad5 fiber knob protein. The data points
represent the mean of three independent determinations.
Figure 7 shows a comparison of expression of luciferase achieved with the RGD-modified vector,
AdRGDluc versus the non-modified vector AdCMVluc. For each cell line, 25,000 cells
were infected at different MOIs and the luciferase expression was measured 36 h after
infection. The mean value of three wells is shown.
Figure 8 shows enhancement of adenovirus infectivity by RGD modification of the fiber knob.
Triplicates of A549 cells (panel A) and LNCaP cells (panel B) were transduced with
increasing doses of either Ad51uc or Ad51ucRGD. After 36h, cell transduction was determined
by luciferase assay. The data are presented as relative light units (RLU) normalized
to mg of cellular protein. The results show an infectivity advantage of the RGD modified
vector over the non-modified one in both cell lines.
Figure 9 shows luciferase expression levels achieved with the RGD-modified vector, AdRGDluc,
versus the non-modified vector, AdCMVluc, depending on the adsorption time. A549 lung
adenocarcinoma cells (105/well) were incubated with an MOI of 100 pfu/cell during different times (a larger
amount of cells and a higher MOI were used relative to the previous experiment in
order to achieve detectable expression at short adsorption times). After the adsorption
time, the cells were washed three times with PBS and complete medium was added. Luciferase
was measure 3 6 h after infection. The mean value of three wells is shown.
Figure 10 shows a conceptual representation of the conditional replication enablement system
for adenovirus. The initial introduction of recombinant virus into the tumor mass
infects the cells shown as circles. The replication enabling plasmid converts these
cells in vector-producing cells. The produced vector can infect adjacent cells (arrows).
Figure 11 shows functional analysis of pE1FR. LS174T cells were cotransduced with the plasmid
indicated in the abscissa as a liposomic complex (0.5 µg DNA/1.0 µg DOTAP:DOPE) and
AdCMVluc (MOI=1). Forty eight hours after transduction, the amount of virus present
in the lysate of cells was measured by a plaque assay in 293 cells.
Figure 12 shows enhancement of E1-defective adenoviral transgene expression by pE1FR administration.
Nude mice engrafted with human lung adenocarcinoma tumors (A549 cell line) received
an intratumoral injection of E1-defective virus AdCMVluc (108 pfu per 8-10 mm diameter tumor) mixed with plasmid pE1FR or pUC13 (3 µg). One week
later, luciferase expression in tumors was measured. Each bar represents one mouse
with a pair of tumors, one treated with AdCMVluc and pE1FR and the other one with
AdCMVluc and pUC13. The ratio of luciferase expression in the tumor treated with pE1FR
versus the one treated with pUC13 is shown.
Figure 13 shows the E1A-like activity of IL-6 can be exploited to produce Ad312 virions in
HepG2 cells and in a variety of cell lines responsive to IL-6. Cells (1 to 4 x 105) were infected with wild type adenovirus or Ad5d1312 at an MOI of 10 in the absence
or presence of 100 units/ml of rhIL-6. Six days later, cells were lysed and the amount
of virus in the lysates was quantitated by plaque assay in 293 cells. For each cell
line, bar from left to right represent wild type, wild type + IL-6, d1312, and d1312
+ IL-6.
Figure 14 shows replication of Ad5d1312 and oncolytic effect in tumor cells without IL-6 addition.
Ovarian carcinoma cells (OVCAR-3) were infected with E1-a deleted AD5d1312, wild type
or E4-deleted Ad5d11014 (MOI=10). Figure 14A shows that six days post-infection, cells were lysed and the amount of virus in the
lysates was measured by plaque assay in 293 cells (for WT and d1312) or W162 cells
(for d11014). Figure 14B shows that in a separate experiment, seven days post-infection cells were fixed with
formaldehyde and stained with crystal violet. No viable cells were found in wells
with cells infected with WT and d1312 viruses in contrast to mock-infected and d11014-infected
cells.
Figure 15 shows that E1a-deleted virus d1312 can lyse human ovarian cancer cells. SW626 cells
and two primary cultures of two ovarian tumors were infected with E1-a deleted Ad5d1312,
wild type or E4-deleted Ad5d11014 (MOI=10). Seven days post-infection, cells were
fixed with formaldehyde and stained with crystal violet. No viable cells were found
after infection with the wild type and d1312 viruses in contrast to mock-infected
and d11014-infections.
Figure 16 shows that normal peritoneal lining cells do not support the replication of the E1a-deleted
Ad5d1312 adenovirus even in the presence of exogenous IL-6. Human mesothelial were
cells isolated from normal peritoneal lining by mechanical disruption and collagenase
D treatment. Cells were infected with E1-a deleted Ad5d1312 or wild type control (MOI=10)
in the absence or presence of IL-6. Twelve days post-infection cells were fixed with
formaldehyde and stained with crystal violet. Cells remained viable when infected
with Ad5d1312.
Figure 17 shows the analyses of adenoviral DNA. Figure 17A shows the map of E1A and fiber encoding regions of Ad5-A24RGD amplified by PCR, showing
the 24-bp deletion and the introduced RGD encoding sequence. Figure 17B shows restriction analysis of Ad5-024RGD. The presence of the 24-bp deletion was
confirmed by BstX I digestion of the PCR product of the E1A region. The fragments were resolved on
a 2% agarose gel, and visualized by UV fluorescence. Marker: Gibco 1 Kb DNA ladder.
The presence of uncleaved PCR product verified the presence of the deletion (left).
PCR amplification products of the region encoding the fiber from Ad5-A24 and Ad5-A24RGD
were resolved on a 6% acrylamide gel. Marker: Gibco 100 bp DNA ladder. The bigger
size (27 bp) of Ad5-A24RGD band indicates the presence of the sequence encoding RGD
(right).
Figure 18 shows propagation efficiency of Ad5-A24 versus Ad5-A24RGD. A549 cells were infected
with 0.01 particles/cell of Ad5-A24 or Ad5-A24RGD and incubated in medium containing
1 µCi/ml of BrdU. At the indicated times after infection, the cells were harvested,
and the encapsidated DNA was purified by the spermine-HCl method. Viral DNA from 6
x 105 infected cells was digested with HindIII, electrophoresed, and the resulting fragments were blotted into a membrane that
was processed with a mouse anti-BrdU antibody. The amount of BrdU incorporated into
viral DNA indicated that Ad5-A24RGD propagation is more efficient than that of Ad5-A24.
Figure 19 shows oncolytic potency of the RGD-modified virus. Figure 19 A shows A549 and LNCaP cells infected with 0.001 or 0.01 particles/cell of Ad51ucRGD,
Ad5-Δ24, or Ad5-A24RGD. Eight (A549) and 10 days (LNCaP) later, the cells were fixed
and stained with crystal violet. A higher magnification of two wells is presented
to show the incipient cytopathic effect of Ado24. Figure 19B shows cell viability analyzed with an XTT colorimetric assay. In both cell lines,
Ad5-A24RGD had higher lytic potency than did its unmodified counterpart, as shown
by the percentage of viable cells remaining in the corresponding treatment conditions.
Figure 20 shows in vivo oncolysis by high and low doses of infectivity-enhanced CRAds. Figure 20A shows subcutaneous A549 xenografts in nude mice treated with a single i.t. injection
of 109 viral particles of Ad51ucRGD, Ad5-A24, Ad5-Δ24RGD, or with PBS alone. Figure 20B shows subcutaneous A549 xenografts in nude mice treated with a single i.t. injection
of 107 viral particles of Ad51ucRGD, Ad5-A24, Ad5-A24RGD, or with PBS alone. Tumor size
was measured twice a week. Results are shown as fractional tumor volumes (V/V0, where
V = volume at each time point; V0 = volume at adenovirus injection), and each line
represents the mean of 5 tumors (±SD) in the high-dose group, and 4 tumors (±SD) in
the low-dose group. In the high-dose experiment, both CRAds show a similar oncolytic
effect that results in smaller tumors compared to PBS treated groups (*Ad5-Δ24 p<0.05;
**Ad5-Δ24RGD p<0.01). However, in the low-dose experiment, tumors treated with Ad5-Δ24
followed a growth curve similar to that of tumors treated with non-replicative Ad5-lucRGD;
tumors treated with Ad5-Δ24RGD did not grow (p<0.01 compared to PBS). Figure 20C shows the detection of adenovirus hexon in tumor xenografts by immunofluorescence.
Frozen sections of tumor specimens injected with (a) Ad51ucRGD, (b) Ad5-Δ24, and (c)
Ad5-Δ24RGD were treated with goat anti-hexon antibody and Alexa Fluor 488-labeled
donkey anti-goat antibody, and nuclei were counterstained with Hoechst 33342. Images
were captured from Leitz fluorescence microscope (100x magnification) with a double
filter. Sections taken from tumors treated with CRAds were positive for adenovirus
presence (green dots in b and c), being Ad5-A24RGD signal stronger than that of Ad5-A24.
Samples taken from tumors treated with PBS (not shown) or Ad51ucRGD exhibited no hexon
signal (a). i.t., intratumoral; vp, viral particles; Ad, adenovirus.
Figure 21 shows in vivo oncolysis by systemic delivery of infectivity-enhanced CRAds. A total dose of 109 viral particles divided into two consecutive doses of 5x108/day of either Ad51ucRGD, Ad5-Δ24, Ad5-Δ24RGD, Ad5-wt, or PBS were injected in the
tail vein of nude mice bearing s.c. A549 xenografts. Tumor size was measured weekly.
Results are shown as fractional tumor volumes (V/V0, where V=volume at each time point;
V0= volume at adenovirus injection), and each line represents the mean of 4 tumors
(±SD). The data show that modification of the fiber to broaden the tropism of a replicative
adenovirus improves the oncolytic potential in a systemic delivery context.
Figure 22 shows increased oncolytic effect of an Ad3 knob-containing chimeric adenovirus. SCCHN
cells were mock-infected or infected with vector particles (vp; 10 vp/cell or 100
vp/cell) of two oncolytic vectors, Ad5Luc3 or Ad5/3Luc3. Three days later the monolayers
were stained with crystal violet to estimate the amount of survival tumor cells.
DETAILED DESCRIPTION OF THE INVENTION
[0023] The present invention addresses the two major limitations of replicative adenoviral
agents (viruses and vectors) in their application to cancer gene therapy, i.e., the
efficacy of transduction and the specificity of replication. Adenovirus binds to the
coxsackievirus-adenovirus receptor, CAR, in the cellular membrane using the C-terminal
globular domain of the viral fiber, the knob [41]. Since a limited amount of coxsackievirus-adenovirus
receptor is present in tumors, one means to enhance infectivity would be to provide
additional binding pathways [20,21]. Two methods are described herein to modify adenovirus
binding. The first method uses a Fab fragment of an anti-knob antibody conjugated
to a ligand of a cellular receptor, while the second method comprises direct genetic
modification of the knob sequence.
[0024] One important advantage of direct genetic modification is that the progeny will carry
the modified fiber, thereby retaining the replicative virus' enhanced infectivity
trait through the amplification cycles. Wickman et al. have generated adenoviruses
with chimeric fibers in which the ligand is connected to the carboxyl terminal position
of the fiber [26]. This carboxyl terminal location is not always appropriate because
the addition of more than 20-30 heterologous amino acid residues can result in the
loss of fiber trimerization and binding to the capsid. Furthermore, the three-dimensional
structure of the fiber indicates that the carboxyl terminal end points towards the
virion, and therefore, away from the cell surface [42]. For these reasons, the HI
loop was used herein as an exposed and amenable site for the incorporation of exogenous
sequences.
[0025] With regard to the efforts to increase the specificity at the level of virus replication,
methods have been developed to confer regulated-replication or conditional-replication
competency to adenoviral vectors based upon complementing, in
trans, the essential early genes that are missing in the replication-defective vectors.
In this way, E1-deleted and E4-deleted vectors have been transcomplemented by conjugating
them to E1 or E4 expression plasmids [43,44]. This method enables the vectors to replicate,
thereby augmenting their transduction ability. Methods have also been explored that
allow the continuous replication of the vector, such as using the E1a-like activity
provided by interleukin 6 to enable replication of E1a-deleted vectors.
[0026] It has been recognized that the major limitation in several strategies of cancer
gene therapy resides in the need to transduce the majority of cells of a tumor. With
the exception of a limited bystander effect described in some strategies, the cells
that are left untransduced will jeopardize and reduce any therapeutic effect. Adenoviral
vectors are limited in this regard by the paucity of its receptor, CAR, in tumors
[20-23]. It is a goal of the present invention to improve the infectivity of adenoviral
vectors by providing additional pathways to cell binding besides CAR. Previous data
has shown that modification of the HI loop of the fiber is a feasible strategy to
add new ligand motifs into the fiber. An RGD motif has already been incorporated into
the fiber of regular E1-deleted vectors and been shown to enhance the therapeutic
effects
in vivo.
[0027] The present invention describes the incorporation of modified fiber into conditionally
replicative adenoviral vectors. The current methods of mutating E1, or regulation
of E1 with tumor-specific promoters, are both very rational approaches, but may prove
not selective enough for several reasons. In the case of E1 deletions, the main limitation
lies in incomplete knowledge of the role of these proteins in the viral replicative
cycle and in controlling the cell cycle. For example, adenovirus may use a p53-dependent
mechanism to release the progeny from the infected cell [38]. This would predicate
a positive role for p53 in virus production and would reduce the yields of virus in
p53-deficient cells. On the other hand, other viral proteins besides E1-55K may block
p53 function, such as E4, and this would allow the 55K- to replicate in p53+ cells
[37]. In any case the specificity of a 55K-for p53-defective cells is controversial
[35,36]. Regarding to strategies based on regulation of E1 it is a concern that promoters
can lose certain degree of specificity when inserted into the viral genome [39]. The
presence of E1-like activity in uninfected cells could also pose a problem for the
specificity achieved with both vectors. In this regard, some replication of E1 vectors
has been observed in many different cell lines [40].
[0028] Therefore, it is desirable to improve the replication selectivity of replicative
adenoviral vectors for tumors b y achieving tumor-selective regulation of key early
genes other than E1, such as E2 or E4. An adenovirus-polylysine-DNA transcomplementation
system has been developed as a means to evaluate replication. This replication-enabling
system is used to analyze the efficacy and specificity of tumor-specific replication
mechanisms based on the regulation of the E4 or E2 genes. In the transcomplementation
system, plasmids encoding E2 or E4 under the control of different tumor-specific promoters
are used to screen for mechanisms that confer selective replication. Ultimately, selective
replication will involve the incorporation of the regulated E4 or E2 into the viral
genome to achieve continuous replication. Accordingly, after the tumor-selective replication
has been demonstrated, these regulatory mechanisms are incorporated into a single
viral vector. Optimally, these regulatory mechanisms are combined with the fiber modification
described herein to enhance infectivity.
[0029] Initial tumor models are based on cell lines with differential expression of the
PSA protein: LNCaP and DU145. Tumors derived from lung adenocarcinoma cell lines and
ovarian cell lines are used to evaluate viruses with promoters such as Carcinoembryonic
antigen (CEA) or secretory leukoprotease inhibitor (SLPI). Therapeutic effects are
only observed in tumors derived from the cell lines that allow the expression of the
tumor-specific controlled E4 or E2, that is, replication of the virus. I n these permissive
cell lines, higher therapeutic advantage is observed for the RGD-modified virus relative
to the unmodified virus.
[0030] The present invention is directed towards an infectivity-enhanced conditionally-replicative
adenovirus. This adenovirus possesses enhanced infectivity towards a specific cell
type, which is accomplished by a modification or replacement of the fiber of a wildtype
adenovirus Such as to include and RGD amino-acid Sequence into the HI loop of the
fiber and results in enhanced infectivity relative to the wildtype adenovirus. The
adenovirus also has at least one conditionally regulated early gene, such that replication
of the adenovirus is limited to the specific cell type. Preferably, the cell is a
tumor cell.
[0031] The modification or replacement of the fiber results in CAR-independent gene transfer.
Generally, the modification is accomplished by introducing a fiber knob domain from
a different subtype of adenovirus. The fiber is modified b introducing a ligand into
the HI loop of the fiber knob. Optionally replacing the fiber with a substitute protein
which presents a targeting ligand may be contemplated . Representative ligands include
physiological ligands, anti-receptor antibodies and cell-specific peptides. The ligand
comprises a tripeptide having the sequence Arg-Gly-Asp (RGD), or more specifically,
a peptide having the sequence CDCRGDCFC.
[0032] Generally, the fiber substitute protein associates with the penton base of the adenovirus.
Structurally, the fiber substitute protein is preferably a rod-like, trimeric protein.
It is desirable for the diameter of the rod-like, trimeric protein to be comparable
to the native fiber protein of wild type adenovirus. It is important that the fiber
substitute protein retain trimerism when a sequence encoding a targeting ligand is
incorporated into the carboxy-terminus. In a preferred aspect, a representative example
of a fiber substitute protein is T4 bacteriophage fibritin protein. Also described
is a fiber substitute protein comprising a) an amino-terminal portion comprising an
adenoviral fiber tail domain; b) a chimeric fiber substitute protein; and c) a carboxy-terminal
portion comprising a targeting ligand.. More generally, the fiber substitute protein
can be selected from the group consisting of trimeric structural proteins, trimeric
viral proteins and trimeric transcription factors. Other representative examples of
fiber substitute proteins include isoleucine trimerization motif and neck region peptide
from human lung surfactant D. Preferably, the fiber substitute protein has a coiled
coil secondary structure. The secondary structure provides stability because of multiple
interchain interactions. The fiber substitute protein does not have to be a natural
protein. In fact, a person having ordinary skill in this art would be able to construct
an artificial protein. Preferably, such an artificial fiber substitute protein would
have a coiled coil secondary structure.
[0033] The early gene may be conditionally regulated by means consisting of a tissue-specific
promoter operably linked to an early gene (
e.g., E1, E2 and/or E4) and a mutation in an early gene (
e.g., E1, E2 and/or E4). Representative tissue-specific promoters are the prostate specific
antigen (PSA), Carcinoembryonic antigen (CEA), secretory leukoprotease inhibitor (SLPI),
and alpha-fetoprotein (AFP).
[0034] Additionally, the adenovirus may carry a therapeutic gene in its genome. In conjunction
with the above-mentioned therapeutic gene, a method of providing gene therapy to an
individual in need of such treatment is disclosed herein, comprising the steps of:
administering to the individual an effective amount of an infectivity-enhanced conditionally-replicative
adenovirus. When the therapeutic gene carried by the adenovirus is, for instance,
a herpes simplex virus thymidine kinase gene, the present description further provides
for a method of killing tumor cells in an individual in need of such treatment, comprising
the steps of: pretreating the individual with an effective amount of an infectivity-enhanced
conditionally-replicative adenovirus expressing the TK gene; and administering ganciclovir
to the individual. Generally, the individual has cancer.
[0035] Also described a method of infectivity-enhanced and conditionally-replicative adenoviral
gene therapy in an individual in need of such treatment, comprising the steps of:
administering to the individual a therapeutic dose of an infectivity-enhanced conditionally-replicative
adenovirus. Representative routes of administration are intravenously, intraperitoneally,
systemically, orally and intratumorally. Generally, the individual has cancer and
the cell is a tumor cell.
[0036] In accordance with the present disclosure, there may be employed conventional molecular
biology, microbiology, and recombinant DNA techniques within the skill of the art.
Such techniques are explained fully in the literature. See,
e.g., Sambrook, Fritsch & Maniatis, "Molecular Cloning: A Laboratory Manual (1982); "
DNA Cloning: A Practical Approach," Volumes I and II (D.N. Glover ed. 1985); "
Oligonucleotide Synthesis" (M.J. Gait ed. 1984); "
Nucleic Acid Hybridization" [B.D. Hames & S.J. Higgins eds. (1985)]; "
Transcription and Translation" [B.D. Hames & S.J. Higgins eds. (1984)]; "
Animal Cell Culture" [R.I. Freshney, ed. (1986)]; "
Immobilized Cells And Enzymes" [IRL Press, (1986)];
B. Perbal, "A Practical Guide To Molecular Cloning" (1984). Therefore, if appearing herein, the following terms shall have the definitions
set out below.
[0037] A "DNA molecule" refers to the polymeric form of deoxyribonucleotides (adenine, guanine,
thymine, or cytosine) in its either single stranded form, or a double-stranded helix.
This term refers only to the primary and secondary structure of the molecule, and
does not limit it to any particular tertiary forms. Thus, this term includes double-stranded
DNA found,
inter alia, in linear DNA molecules (
e.g., restriction fragments), viruses, plasmids, and chromosomes. In discussing the structure
herein according to the normal convention of giving only the sequence in the 5' to
3' direction along the nontranscribed strand of DNA (
i.e., the strand having a sequence homologous to the mRNA).
[0038] A "vector" is a replicon, such as plasmid, phage or cosmid, to which another DNA
segment may be attached so as to bring about the replication of the attached segment.
A "replicon" is any genetic element (
e.g., plasmid, chromosome, virus) that functions as an autonomous unit of DNA replication
in vivo; i.e., capable of replication under its own control. An "origin of replication" refers to
those DNA sequences that participate in DNA synthesis. An "expression control sequence"
is a DNA sequence that controls and regulates the transcription and translation of
another DNA sequence. A coding sequence is "operably linked" and "under the control"
of transcriptional and translational control sequences in a cell when RNA polymerase
transcribes the coding sequence into mRNA, which is then translated into the protein
encoded by the coding sequence.
[0039] In general, expression vectors containing promoter sequences which facilitate the
efficient transcription and translation of the inserted DNA fragment are used in connection
with the host. The expression vector typically contains an origin of replication,
promoter(s), terminator(s), as well as specific genes which are capable of providing
phenotypic selection in transformed cells. The transformed hosts can be fermented
and cultured according to means known in the art to achieve optimal cell growth.
[0040] A DNA "coding sequence" is a double-stranded DNA sequence which is transcribed and
translated into a polypeptide
in vivo when placed under the control of appropriate regulatory sequences. The boundaries
of the coding sequence are determined by a start codon at the 5' (amino) terminus
and a translation stop codon at the 3' (carboxyl) terminus. A coding sequence can
include, but is not limited to, prokaryotic sequences, cDNA from eukaryotic mRNA,
genomic DNA sequences from eukaryotic (
e.g., mammalian) DNA, and even synthetic DNA sequences. A polyadenylation signal and transcription
termination sequence will usually be located 3' to the coding sequence. A "cDNA" is
defined as copy-DNA or complementary-DNA, and is a product of a reverse transcription
reaction from a mRNA transcript. An "exon" is an expressed sequence transcribed from
the gene locus, whereas an "intron" is a non-expressed sequence that is from the gene
locus.
[0041] Transcriptional and translational control sequences are DNA regulatory sequences,
such as promoters, enhancers, polyadenylation signals, terminators, and the like,
that provide for the expression of a coding sequence in a host cell. A "
cis-element" is a nucleotide sequence, also termed a "consensus sequence" or "motif,
that interacts with other proteins which can upregulate or downregulate expression
of a specific gene locus. A "signal sequence" can also be included with the coding
sequence. This sequence encodes a signal peptide, N-terminal to the polypeptide, that
communicates to the host cell and directs the polypeptide to the appropriate cellular
location. Signal sequences can be found associated with a variety of proteins native
to prokaryotes and eukaryotes.
[0042] A "promoter sequence" is a DNA regulatory region capable of binding RNA polymerase
in a cell and initiating transcription of a downstream (3' direction) coding sequence.
For purposes of defining the present invention, the promoter sequence is bounded at
its 3' terminus by the transcription initiation site and extends upstream (5' direction)
to include the minimum number of bases or elements necessary to initiate transcription
at levels detectable above background. Within the promoter sequence will be found
a transcription initiation site, as well as protein binding domains (consensus sequences)
responsible for the binding of RNA polymerase. Eukaryotic promoters often, but not
always, contain "TATA" boxes and "CAT" boxes. Prokaryotic promoters contain Shine-Dalgarno
sequences in addition to the - 10 and -35 consensus sequences.
[0043] The term "oligonucleotide" is defined as a molecule comprised of two or more deoxyribonucleotides,
preferably more than three. Its exact size will depend upon many factors which, in
turn, depend upon the ultimate function and use of the oligonucleotide. The term "primer"
as used herein refers to an oligonucleotide, whether occurring naturally as in a purified
restriction digest or produced synthetically, which is capable of acting as a point
of initiation of synthesis when placed under conditions in which synthesis of a primer
extension product, which is complementary to a nucleic acid strand, is induced, i.e.,
in the presence of nucleotides and an inducing agent such as a DNA polymerase and
at a suitable temperature and pH. The primer may be either single-stranded or double-stranded
and must be sufficiently long to prime the synthesis of the desired extension product
in the presence of the inducing agent. The exact length of the primer will depend
upon many factors, including temperature, source of primer and use the method. For
example, for diagnostic applications, depending on the complexity of the target sequence,
the oligonucleotide primer typically contains 15-25 or more nucleotides, although
it may contain fewer nucleotides.
[0044] Primers are selected to be "substantially" complementary to different strands of
a particular target DNA sequence. This means that the primers must be sufficiently
complementary to hybridize with their respective strands. Therefore, the primer sequence
need not reflect the exact sequence of the template. For example, a non-complementary
nucleotide fragment may be attached to the 5' end of the primer, with the remainder
of the primer sequence being complementary to the strand. Alternatively, non-complementary
bases or longer sequences can be interspersed into the primer, provided that the primer
sequence has sufficient complementarity with the sequence or hybridize therewith and
thereby form the template for the synthesis of the extension product.
[0045] As used herein, the terms "restriction endonucleases" and "restriction enzymes" refer
to enzymes which cut double-stranded DNA at or near a specific nucleotide sequence.
[0046] "Recombinant DNA technology" refers to techniques for uniting two heterologous DNA
molecules, usually as a result of
in vitro ligation of DNAs from different organisms. Recombinant DNA molecules are commonly
produced by experiments in genetic engineering. 'Synonymous terms include "gene splicing",
"molecular cloning" and "genetic engineering". The product of these manipulations
results in a "recombinant" or "recombinant molecule".
[0047] A cell has been "transformed" or "transfected" with exogenous or heterologous DNA
when such DNA has been introduced inside the cell. The transforming DNA may or may
not be integrated (covalently linked) into the genome of the cell. In prokaryotes,
yeast, and mammalian cells for example, the transforming DNA may be maintained on
an episomal element such as a vector or plasmid. With respect to eukaryotic cells,
a stably transformed cell is one in which the transforming DNA has become integrated
into a chromosome so that it is inherited b y daughter cells through chromosome replication.
This stability is demonstrated by the ability of the eukaryotic cell to establish
cell lines or clones comprised of a population of daughter cells containing the transforming
DNA. A "clone" is a population of cells derived from a single cell or ancestor by
mitosis. A "cell line" is a clone of a primary cell that is capable of stable growth
in vitro for many generations. An organism, such as a plant or animal, that has been transformed
with exogenous DNA is termed "transgenic".
[0048] As used herein, the term "host" is meant to include not only prokaryotes but also
eukaryotes such as yeast, plant and animal cells. A recombinant DNA molecule or gene
can be used to transform a host using any of the techniques commonly known to those
of ordinary skill in the art. Prokaryotic hosts may include
E coli, S. tymphimurium, Serratia marcescens and
Bacillus subtilis. Eukaryotic hosts include yeasts such as
Pichia pastoris, mammalian cells and insect cells, and more preferentially, plant cells, such as
Arabidopsis thaliana and
Tobaccum nicotiana.
[0049] A "heterologous" region of the DNA construct is an identifiable segment of DNA within
a larger DNA molecule that is not found in association with the larger molecule in
nature. Thus, when the heterologous region encodes a mammalian gene, the gene will
usually be flanked by DNA that does not flank the mammalian genomic DNA in the genome
of the source organism. In another example, the coding sequence is a construct where
the coding sequence itself is not found in nature (
e.g., a cDNA where the genomic coding sequence contains introns, or synthetic sequences
having codons different than the native gene). Allelic variations or naturally-occurring
mutational events do not give rise to a heterologous region of DNA as defined herein.
[0050] As used herein, the terms "conditionally regulated" and "conditionally-replicative"
refer to the expression of a viral gene or the replication of a virus or a vector,
wherein the expression of replication is dependent (
i.e., conditional) upon the presence or absence of specific factors in the target cell.
[0051] As used herein, the term "early genes" refers to those adenoviral genes expressed
prior to the onset of adenoviral DNA replication.
[0052] As used herein, the term "CAR-independent infectivity" refers to the entry of adenovirus
into a cell by receptors different from the coxsackie-adenovirus receptor (CAR).
[0053] As used herein, the term "RGD-integrin interaction" refers to the arginine-glycine-aspartic
acid (RGD) residues in a peptide binding to the integrin receptor molecules.
[0054] As used herein, the term "replication-competent adenoviruses" refers to an adenovirus
capable of replication (
i.e., an adenovirus that yields progeny).
[0055] As used herein, the term "fiber substitute protein" is a protein that substitutes
for fiber and provides three essential features: trimerizes like fiber, lacks adenoviral
tropism and has novel tropism.
[0056] It is specifically contemplated that pharmaceutical compositions may be prepared
using the novel adenovirus of the present invention. In such a case, the pharmaceutical
composition comprises the novel adenovirus of the present invention and a pharmaceutically
acceptable carrier. A person having ordinary skill in this art would readily be able
to determine, without undue experimentation, the appropriate dosages and routes of
administration of this adenovirus of the present invention. When used
in vivo for therapy, the adenovirus of the present invention is administered to the patient
or an animal in therapeutically effective amounts,
i.e., amounts that eliminate or reduce the tumor burden. It may be administered parenterally,
preferably intravenously, but other routes of administration will be used as appropriate.
The dose and dosage regimen will depend upon the nature of the cancer (primary or
metastatic) and its population, the characteristics of the particular immunotoxin,
e.g., its therapeutic index, the patient, the patient's history and other factors. The
amount of adenovirus administered will typically be in the range of about 10
10 to about 10" viral particles per patient. The schedule will be continued to optimize
effectiveness while balanced against negative effects of treatment.
See Remington's Pharmaceutical Science, 17th Ed. (1990) Mark Publishing Co., Easton, Penn.; and
Goodman and Gilman's: The Pharmacological Basis of Therapeutics 8th Ed (1990) Pergamon
Press. For parenteral administration, the adenovirus will most typically be formulated
in a unit dosage injectable form (solution, suspension, emulsion) in association with
a pharmaceutically acceptable parenteral vehicle. Such vehicles are preferably non-toxic
and non-therapeutic. Examples of such vehicles are water, saline, Ringer's solution,
dextrose solution, and 5% human serum albumin. Nonaqueous vehicles such as fixed oils
and ethyl oleate may also be used. Liposomes may be used as carriers. The vehicle
may contain minor amounts of additives such as substances that enhance isotonicity
and chemical stability,
e.
g., buffers and preservatives. The immunotoxin will typically be formulated in such
vehicles at concentrations readily recognizable to those having ordinary skill in
this art.
[0057] The following examples are given for the purpose of illustrating various embodiments
of the invention and are not meant to limit the present invention in any fashion:
EXAMPLE 1 (Background example)
Enhanced tumor transduction with adenoviral vectors modified with a ligand attached
to the fiber
[0058] As a first approach towards enhancing the infectivity of adenoviral vectors and to
demonstrate the tumor transduction advantage of vectors with altered tropism over
unmodified vectors, an anti-fiber antibody conjugated to fibroblast growth factor
(FGF2) was used. The Fab portion of the anti-knob antibody, lD6.14, which is capable
of blocking the interaction of the fiber with its cognate cellular receptor, was chemically
conjugated to FGF2. The resulting Fab-FGF2 conjugate was complexed with adenoviral
vectors expressing luciferase or β-galactosidase reporter genes to compare the transduction
efficiency of the modified and unmodified vectors. Vector modification increased the
level of gene expression more than 9-fold, as measured by luciferase activity (Figure
1A), largely due to transduction of a greater percentage of target cells as seen by
β-galactosidase staining (Figure 1B). This experiment clearly demonstrates that a
retargeted adenoviral vector can overcome the inefficacious transduction observed
in certain cell lines transduced poorly by adenoviral vectors.
[0059] To compare the therapeutic effect of an FGF2-modified vector to an unmodified vector
in established tumors, the conjugate was then mixed with an adenovirus expressing
HSV-TK (AdCMVHSV-TK). Treatment with the modified vector of SKOV3 ovarian carcinomas
established in nude mice followed b y administration of the prodrug, ganciclovir,
resulted in a significant prolongation of survival when compared with the unmodified
vector plus ganciclovir (Figure 2). Thus, retargeting can increase the
in vivo therapeutic effect of adenoviral vectors against tumors. It is clear that the infectivity
of tumors by unmodified adenovirus is not optimal and modification of the capsid to
alter the tropism of the virus is a direct approach to increase this infectivity.
EXAMPLE 2
Genetic modification of the HI loop of the fiber provides enhanced infectivity to
adenoviral vectors
[0060] The Fab-ligand conjugation method described in Example 1 only modifies the tropism
of the vector prepared for inoculation. In the context of a replicative vector, it
is advantageous to modify the tropism of the vector that replicates in the tumor as
well. With this rationale, a genetic modification of the fiber is necessary for replicative
vectors because it is carried over to the progeny. As a simple and potent strategy
for retargeting, the sequence of the fiber was genetically modified. Based on the
three-dimensional model of the fiber knob [42], targeting ligands were inserted into
the HI loop of the fiber (Figure 3). This loop is flexible, exposed on the outside
of the knob, is not involved in fiber trimerization and its variable length in different
Ad serotypes suggests that insertions or substitutions do not affect the fiber stability.
[0061] As a ligand to introduce into the HI loop of the fiber knob, the sequence coding
for an RGD peptide, CDCRGDCFC, was chosen. This RGD sequence is known to target tumors
by binding with high affinity to several types of integrins [45,46]. It was hypothesized
that an adenoviral vector able to bind via fiber-RGD/integrin interaction would not
depend upon the presence of the CAR receptor in tumors to be effective, and would
therefore target tumors more efficiently than the unmodified vector counterpart.
[0062] The DNA sequence encoding the peptide was cloned into the
EcoRV site of the knob domain in a plasmid containing the fiber sequence. The wild type
fiber of an E1,E3-deleted adenoviral vector expressing the luciferase gene, AdCMVLuc,
was replaced with the RGD-modified fiber by homologous recombination in bacteria [47].
After homologous recombination, the genome of the new adenoviral vector was released
from the plasmid backbone by digestion with
PacI. To use the firefly luciferase gene, the internal
PacI site of this gene was eliminated by introducing a silent mutation. The plasmid obtained
as a result of these DNA recombinations was then utilized for transfection of 293
cells to rescue Ad51ucRGD. The presence of RGD in the virus was confirmed by PCR as
well as by cycle sequencing of viral DNA isolated from CsCl-purified virions of Ad51ucRGD.
[0063] To demonstrate that the genetic modification of the fiber was able to confer CAR-independent
infectivity to the modified vector, the unmodified AdCMVLuc and the modified Ad51ucRGD
vectors were used to transduce 293, HUVEC, and RD cell lines, which express high,
moderate, and low levels of CAR, respectively. The CAR-independent infection was further
analyzed using competitive inhibition by recombinant Ad5 fiber knob protein, known
to efficiently block virus binding to CAR receptor. Luciferase expression in 293 cells
mediated by the unmodified virus, AdCMVLuc, was efficiently blocked b y recombinant
knob protein (Figure 4A). Depending on the multiplicity of infection (MOI) used, knob
protein blocked 85% to 93% of luciferase activity in AdCMVLuc-transduced cells. In
contrast, the same concentration of knob was able to block only 40% to 60% of Ad51ucRGD-mediated
gene expression in 293 cells, indicating that in addition to the fiber-CAR interaction
utilized by the wild type Ad5, Ad51ucRGD is capable of using an alternative, CAR-independent,
cell entry pathway. Of note, the contribution of that alternative mechanism of cell
binding was quite significant, providing 40% to 60% of overall gene transfer to 293
cells. Luciferase expression in HUVEC cells transduced with Ad51ucRGD was about 30-fold
higher than with AdCMVLuc (Figure 4B). The effect of Ad5 fiber knob on AdCMVIuc-mediated
transduction was less dramatic than in 293 cells, consistent with a relative lack
of CAR in the HUVEC. Most importantly, recombinant knob protein did not inhibit the
levels of luciferase expression directed b y Ad51ucRGD. The luciferase activity detected
in RD cells transduced with AdCMVluc was extremely low: at an MOI of one pfu/cell,
it was almost equal to the background level of mock-infected cells (Figure 4C). In
contrast, the level of transgene expression achieved with Ad51ucRGD was 16- to 47-fold
higher than with AdCMVLuc, and expression was not inhibited by the fiber knob.
[0064] These experiments clearly showed that incorporation of the RGD peptide into the fiber
of Ad51ucRGD resulted in dramatic changes in virus-to-cell interaction by providing
an alternative CAR-independent cell attachment pathway. Of note, the insertion of
the RGD sequence in the HI loop did not abrogate the CAR-mediated entry pathway, so
the modified vector has a two independent mechanism to bind to the cells. As the present
invention shows, this contributes to the enhanced infectivity of the modified vector
in all cell lines and tumors tested.
EXAMPLE 3
Enhanced tumor transduction via RGD-fiber modification
[0065] To determine if the RGD sequence incorporated into the HI loop of the fiber could
increase the infectivity of tumors, the ability of the modified vector to deliver
genes to cultured human ovarian cancer cells was examined. Characterization of two
cell lines, SKOV3.ip1 and OV-4, by flow cytometry showed that they both express moderate-to-high
levels of αvβ3 and αvβ5 integrins. SKOV3.ip1 also expresses a high level of CAR, whereas
OV-4 only modestly expresses CAR.
[0066] The incorporation of recombinant RGD-containing fiber protein in the Ad51ucRGD vector
dramatically improved the ability of the virus to efficiently transduce these cells
(Figure 5A). At different MOIs tested, Ad51ucRGD-transduced cultures of SKOV3.ip1
cells showed 30-fold to 60-fold increase in luciferase activity compared to cells
transduced with control virus. Interestingly, while the purified fiber knob blocked
over 90% of AdCMVLuc-mediated gene transfer, it could only block 20% of luciferase
activity in Ad51ucRGD-treated cells, indicating a majority of CAR-independent entry
mechanisms for Ad51ucRGD. In OV-4 cells, the transduction efficiency achieved with
the RGD-modified vector was 300- to 600-fold higher than the unmodified one (Figure
5B). Again, when the fiber knob was used as an inhibitor of CAR-mediated cell entry,
it did not have any significant effect on Ad51ucRGD-mediated gene delivery, strongly
suggesting that this virus primarily utilizes RGD-integrin interaction to bind to
target cells.
[0067] The utility of the Ad51ucRGD vector was next evaluated in the context of primary
tumor cells. In this regard, recent human clinical trials have pointed out the disparity
between the efficacy of adenoviral vectors in various model systems and in the clinical
context, where rather low transduction efficiencies have been noted [20-23]. As integrins
have been shown to be frequently overexpressed by various epithelial tumors, vector
targeting to these cell surface receptors provides a means to achieve CAR-independent
gene transfer [46].
[0068] In the experiments described herein, ovarian cancer cells obtained from two patients
were treated with either Ad51ucRGD or AdCMVLuc in the presence or absence of blocking
knob protein. Luciferase expression in cells treated with AdCMVLuc was extremely low
(Figure 6), thereby indicating inability of adenoviral vectors containing unmodified
fibers to efficiently infect ovarian cancer cells. Strong inhibition by the fiber
knob on AdCMVLuc-mediated luciferase expression suggests that the fiber-CAR interaction
is the only pathway this virus can use to infect this type of cell. In contrast, Ad51ucRGD
directed levels of transgene expression two- to three-orders of magnitude higher than
those detected in AdCMVLuc-transduced cells. The knob blocked 20% of the gene transfer
at an MOI of 1 pfu/cell, and no effect was observed at an MOI of 10 pfu/cell.
[0069] The observations of enhanced infectivity have been extended to other tumor cell types
besides ovarian carcinoma. In six human non-small cell lung adenocarcinoma cell lines,
one human mesothelioma cell line, and one rat mesothelioma cell line, the luciferase
expression level achieved with the RGD-modified vectors was always higher than the
level achieved with the non-modified vector at a variety of different MOIs (Figure
7).
[0070] The increase in transduction was also observed in A549 lung adenocarcinoma cells
and LNCaP prostate carcinoma cells (Figure 8). In both cell lines the RGD modified
vector showed an infectivity advantage over the non-modified counterpart. The major
difference was observed in A549 cells, showing a 100-fold increase in infection, whereas
LNCaP cells showed 10-fold increase. In LNCaP, the major differences were observed
at lower multiplicities of infection, likely indicating that the integrinmediated
pathway was saturated.
[0071] The increased efficacy of infection of the RGD-modified vector was also measured
in time course experiments in which the incubation time of the virus with the cells
was limited. The transduction efficiency was always better with the modified vector
and the differences were more marked at shorter times of infection: the RGD-modified
vector produced a 1000-fold greater luciferase expression when only 7 minutes of adsorption
were allowed (Figure 9). At longer adsorption times, the differences between the modified
and non-modified vectors were reduced to 10-fold. This difference could have important
implications in adenoviral-mediated gene therapy because the time of exposure of the
vector to the tumor target cells is expected to be limited b y the intratumoral high
pressure.
[0072] Overall, this data points out the importance of providing an alternative entry pathway
to adenoviral vectors for the infectivity of tumors. In all cell lines and tumor types
analyzed, a vector that can use the natural entry pathway via primary binding to CAR
and an additional entry pathway via binding to integrins transduces more efficiently
than a vector that only can use the natural CAR receptor.
EXAMPLE 4 (BACKGROUND EXAMPLE)
Replication-competent, E1-transcomplementation vectors
[0073] Most replication-defective adenovirus vectors in preclinical and clinical use have
deleted E1A and E1B genes [14]. These deletions render the vector unable to replicate,
or replication-incompetent, and these vectors can replicate only when E1 proteins
are supplied in
trans. These replication-incompetent vectors transduce the cells that they infect but they
do not produce any progeny.
[0074] A conditional replication enablement system for adenovirus has been developed in
which the E1 genes are supplied in
trans to cells infected with E1-deleted vectors [31,48,49] (Figure 10). The replication-enabling
system has been developed primarily as a means of amplifying transduction in tumor
nodules. In order to achieve a more extensive amplification of the vector and lysis
of tumor cells, the secondarily produced vector should propagate continuously in tumor
cells. Replication-enabling has been achieved by linking plasmids encoding the E1
proteins to the exterior of the capsid [31,44,48] or separately introducing the plasmid
using cationic lipids [49]. These experiments provided evidence that replication-enabling
systems could achieve amplification of the
in vivo therapeutic response of an adenoviral vector carrying HSV-TK [49]. E4-deleted adenoviruses
have also been transcomplemented with a plasmid containing the E4 open reading frame
6 gene or the complete E4 region [44]. E4 transcomplementation is important in the
context of reducing immunogenicity and increasing long-term gene transfer [14].
[0075] In order to further enhance the utility of the replication-enabling system, it is
a goal to reduce the possibilities of recombination between the E1-deleted vector
and the transcomplementing plasmid. This recombination would generate replication-competent
adenoviruses (RCA). Therefore, an E1 expressing plasmid has been constructed, pE1FR,
in which E1a and E1b sequences are in tandem but oriented in opposite 5' to 3' direction.
Cells co-transduced with this plasmid and an E1-defective adenoviral vector using
cationic liposomes resulted in replication-defective adenovirus production levels
comparable to that achieved by co-transduction of the virus and pEl (Figure 11) [49].
Comparable results weve obtained with HeLa, A549 and SKOV3-ip1 cell lines.
[0076] This demonstrates that pE1FR can transcomplement El-deleted vectors and convert the
infected cells into vector-producing cells. To demonstrate that this vector could
also enhance the tumor transduction achieved with an E1-deleted vector
in vivo, tumors were injected with E1-defective virus mixed with pE1FR, or a plasmid control.
Assessment of the luciferase content showed that 6 out of 8 tumors had increased luciferase
activity in the pE1FR group relative to the controls (Figure11).
[0077] This data indicates that E1-expression vectors, such as pE1FR, represent a feasible
way to increase the
in vivo transduction efficiency of E1-deleted vectors in tumors. The amplification of the
transduction efficiency achieved with a system such as the replication-enabling system
is limited, however, by the inability of the vector progeny to keep replicating. The
replication-enabling function needs to be carried over in the vectors produced by
the tumor cells to allow repeated cycles of replication.
EXAMPLE 5 (BACKGROUND EXAMPLE)
Replication competent vectors dependent upon IL-6
[0078] As shown in the data above, the replication-enabling system has been developed primarily
as a means of amplifying transduction in tumor nodules. Methods have also been explored
to achieve a more extensive amplification of the vector and subsequent lysis of tumor
cells. To fulfill this goal, the secondarily produced vector should propagate continuously
in tumor cells and incorporate a regulatory mechanism that confines this propagation
to the tumor. E1a 12s and 13s adenoviral proteins are necessary to induce the expression
of other viral genes, and therefore, an E1a-deleted vector is impaired in its replication
[14]. It has been reported that interleukin 6 can induce transcription factors that
are able to substitute for the E1a activity of adenovirus [50].
[0079] To explore whether an E1a-deleted vector such as Ad5d1312 could replicate in the
presence of IL-6 in different cancer cell lines, cells were infected with d1312 in
the presence of IL-6 and the progeny were examined (Figure 13). In all cell lines,
infectious virions were produced to a certain extent in the presence and absence of
IL-6, although in lower amounts than the wild type adenovirus. The effects of IL-6
in d1312 production were markedly seen in two cell lines: HepG2 and EJ. In HepG2 cells,
IL-6 resulted in a 1.5 log increase of viral production.
[0080] These experiments demonstrate that the IL-6-inducible Ela-like activity can complement
the E1a deletion during infection of HepG2 and EJ cells. To overcome the requirement
of exogenous IL-6, carcinomas, e.g., cervical, chorio, and ovarian, that have an IL-6
autocrine loop [51-53] were infected with the E1A-deleted virus, d1312. OVCAR-3 and
SW626 cells have a functional IL-6 autocrine loop [53]. Upon infection of OVCAR-3
cells with Ad5d1312, or wild type or E4-deleted control viruses, Ad5d1312 was produced
to levels similar to levels produced by the wild type control, even in the absence
of IL-6 (Figure 14). This IL-6-independent replication of E1a-deleted virus was also
demonstrated in SW626 cells and primary cultures of ovarian tumors (Figure 14).
[0081] These results indicate that cells with an autocrine loop of IL-6 can selectively
support the replication of Ad5d1312 without the addition of exogenous IL-6, and that
these cells are lysed by the E1a-deleted virus. The effects of the E1a-deleted virus
in normal cells were examined. To test the ability of this virus to propagate in normal
cells adjacent to ovarian tumors, human mesothelial cells isolated from peritoneal
lining tissue were infected. Contrary to the wildtype virus control, Ad5d1312 did
not replicate in these cells even in the presence of IL-6 (Figure 16).
[0082] Overall, this data indicates that E1a-deleted adenovirus can be complemented by the
IL-6-induced E1a-like activity found in several tumors. E1a-deleted vectors are, however,
limited by the fact that E1a intrinsic activity has been noted in normal cells [54].
IL-6 production, in the other hand, could result from the injection of the vector
in an immunocompetent host and this natural inflammatory response would result in
nonspecific complementation. Clearly, new mechanisms of tumor-specificity need to
be incorporated to control the replication of adenoviral vectors.
Summary
[0083] The clinical benefits of cancer gene therapy achieved with non-replicative adenoviral
vectors have been hampered by the significant number of cells in a tumor which have
been left unaffected by the direct or indirect effects of the transgenes. Conditional
replicative adenoviruses may represent a significant improvement to solve this problem,
but efficient infectivity and tumor-selective replication need to be achieved to realize
their full potential.
[0084] The importance of the modification of the adenoviral capsid to increase the binding
of the vector to the tumor cells has been demonstrated herein. An integrin-binding
RGD motif inserted in the HI loop of the adenoviral fiber confers an additional binding
pathway besides the natural coxsackie-adenovirus receptor, and this dramatically increases
the infectivity of the vector. The data herein also indicates that transduction efficiency
can also be enhanced if the vector is able to replicate in the tumor. A transcomplementation
system has been developed as a means to evaluate the effects of replication on the
transduction efficiency. This replication-enabling system also provides the opportunity
to analyze the efficacy and specificity of different tumor-specific replication mechanisms
before incorporating these mechanisms into a single viral vector in a
cis-complementation strategy that will allow continuous replication. In this regard,
continuous tumor-selective replication has been shown using E1a-deletion mutants that
propagate in tumors due to an E1a-like activity.
EXAMPLE 6
Incorporation of RGD-fiber into currently defined conditional replicative mutant viruses
[0085] As an initial approach towards comparing the therapeutic potential of an RGD-modified
versus an unmodified replicative adenovirus, conditional replicative mutants that
have been previously described were chosen. Deletion of the E1-55K protein was designed
to confer selective replication to adenoviruses in cells lacking functional p53 [30].
In a similar way, deletion of the Rb-binding sites of E1a has been proposed to achieve
selective replication in cells lacking Rb. These deletion mutants are used as established
models of selective replication-competent viruses.
[0086] The initial plasmid to construct these deletions is pXC1, which contains adenoviral
sequences from basepair 22 to 5790 (Microbix, Hamilton, Canada). For the E1b55K deletion,
the region from
Sau3A1 (Ad5#2426) to
BglII (Ad5#3328) is removed by ligation of the 1 kb
XbaI-
Sau3A1 DNA fragment with the 7.9 k b
Xba1-
BglII DNA fragment to yield plasmid pXC-55K-. For an E1a deletion construct that abrogates
binding to Rb, a derivative of pXC1 (PXC1 Δ24) is obtained with E1a deleted in residues
122 to 129 (Dr. Juan Fueyo, MDACC). This deletion affects the residues of the conserved
region 1 of E1a necessary to bind Rb [55]. These E1b anE1a deletions are incorporated
into the viral genome by homologous recombination with plasmid pVK503, containing
either an unmodified fiber or an RGD-modified fiber. From the plasmids obtained by
homologous recombination, the unmodified 55k- and Δ24 mutants are generated by releasing
the viral genome with
PacI and transfecting into 293 cells. Viruses are amplified and purified by double CsCl
gradient, and titered in 293 cells for
in vitro and
in vivo experiments. The presence of mutated E1, altered fiber, and contaminating wild type
E1, is analyzed by PCR as well as by sequencing of viral DNA isolated from CsC1-purified
virions.
[0087] The 24-bp deletion in the E1A gene and the RGD encoding sequence in the fiber were
verified by PCR (Figure 17). The presence of the RGD motif in the modified fiber was
confirmed by PCR employing fiber primers FiberUp (5'-CAAACGCTGTTGGATTTATG-3') and
FiberDown (5'-GTGTAAGAGGATGTGGCAAAT-3'). The Δ24 deletion was analyzed by PCR with
primers E1a-1 (5'-ATTACCGAAGAAATGGCCGC-3') a n d E1a-2 (5'-CCATTTAACACGCCATGCA-3')
followed by
BstXI digestion. Of note, no adenoviruses having wild-type E1 or wildtype fiber appeared
throughout the propagation of Ad5-Δ24RGD, a finding that confirms the lack of endogenous
adenoviral sequences in A549 cells.
EXAMPLE 7
Infectivity of RGD-modified conditional replicative viruses
[0088] Procedures described above are used to demonstrate that the RGD-modified 55K- and
Δ24 virions bind to integrins. ELISAs are performed with immobilized virions incubated
with purified αvβ3 integrins and anti-α subunit monoclonal antibody, VNR139. The modified
replicative viruses are examined to determine if they are able to bind cells via a
CAR-independent pathway. 293, HUVEC, and RD cells are used, as enhanced RGD-mediated
transduction of these cell lines has already been demonstrated. For binding analysis,
virions are labeled with
125I and incubated with cells. Recombinant knob protein is used as an inhibitor to measure
CAR-independent binding. Infectivity of modified and unmodified 55K and Δ24 mutants
in ovarian, lung and other tumor cell lines, as well as in primary tumors, are compared.
These experiments indicate that the RGD-modified viruses infect tumor cells more efficiently
than the non-modified vectors.
EXAMPLE 8
Evaluation of oncolytic potential of RGD-modified conditional replicative viruses
[0089] Cell lines A549 human lung adenocarcinoma and LNCaP human prostate cancer cell lines were obtained
from the American Type Culture Collection (Manassas, VA). The cells were cultured
in Dulbecco's modified Eagle's medium (DMEM) supplemented with 5% heat-inactivated
fetal bovine serum (FBS), 100 I.U./ml penicillin, and 100 µg/ml streptomycin.
[0090] Virus DNA Replication A549 cells cultured at 90% confluence in 6-well plates were infected with Ad5-Δ24
or Ad5-Δ24RGD at a dose of 0.01 viral particles/cell. After 2 h, the cells were washed
and maintained in DMEM-5% FBS with 1 µCi/ml bromodeoxyuridine (BrdU) (Amersham Pharmacia
Biotech Inc., Piscataway, NJ). Attached and detached cells were harvested at 2, 4,
6, and 8 days after infection, and encapsidated viral DNA was purified by the spermine-HCl
method [63]. One third of the total purified viral DNA (corresponding to 6x10
5 cells) was digested with HindIII and resolved in 1% agarose gel. The fragments were
transferred to a nylon membrane (Amersham Pharmacia Biotech), fixed, blocked in blocking
buffer (50mM Tris-HCl, pH 7.5, 150mM NaCl, 5% dry milk, 2% Tween 20), and incubated
with mouse anti-BrdU IgG (DAKO, Carpinteria, CA) at 4°C overnight. The membrane was
washed next day, incubated with peroxidase-labeled antimouse antibody (Amersham),
and processed by Western blotting analysis with the ECL system (Amersham). The membrane
was exposed to Kodak Biomax ML film for 3 seconds at room temperature and developed
in an automated processor.
[0091] Adenovirus Yield Assay A549 cells cultured at 90% confluence in 6-well plates were infected with 0.01 particles/cell
of Ad5lucRGD, Ad5-Δ24, or Ad5-Δ24RGD for 2 h. The cells were then washed thoroughly
with PBS to remove all non-adsorbed viruses, and maintained in DMEM-5% FBS. After
8 days, cells and media were harvested, freeze-thawed 3 times, centrifuged, and the
titer was determined by plaque assay with A549 cells as targets.
[0092] Oncolysis Assay A549 and LNCaP cells cultured in triplicate in 6-well plates were infected with one
of the three types of adenovirus at doses of 0.001 or 0.01 viral particles/cell when
90% confluence was reached. Eight or ten days after infection, the cell monolayers
were washed with PBS, fixed with 10% fresh buffered formaldehyde for 10 min, and stained
with crystal violet solution (1% crystal violet [w/v], 70% ethanol). After 1 h staining,
the plates were rinsed with tap water and dried.
[0093] In vitro Cytotoxicity Assay (XTT) A549 and LNCaP cells were seeded and infected in parallel with the ones used for
the oncolysis assay described above. Eight or ten days after infection, the media
was carefully removed, and fresh media containing 200 ug/ml of 2,3-bis[2-methoxy-4-nitro-5-sulfophenyl]-2H-tetrazolium-5-carboxyanilide
(XTT) (Sigma, St. Louis, Missouri) was added. Cells were then incubated for 3 h at
37°C. The content of each well was transferred to a microwell plate, and the light
absorbance was read at 450nm in a microplate reader (Molecular Devices Corp., Sunnyvale,
CA). The number of living cells was calculated from non infected cells cultured and
treated with XTT in the same way as were the experimental groups.
[0094] Subcutaneous tumor xenograft model in nude mice Female athymic nu/nu mice (Frederick Cancer Research, MD) 8-10 weeks old were used
to grow A549 s.c. nodules. Eight million cells were xenografted under the skin of
each flank in anesthetized mice. When the nodules reached 60-100 mm
3, a single dose of 10
9 viral particles (high-dose experiment, n = 5) or 10
7 viral particles (low-dose experiment, n = 4) of Ad5lucRGD, Ad5-Δ24, Ad5-Δ24RGD, Ad5-wt
or PBS was administered intratumorally (i.t.). Tumor size was monitored twice a week,
and fractional volume was calculated from the formula: (length x width x depth) x
1/2. The mice were euthanized 35 days after the treatment because of the size of the
tumors in the control group. Statistical differences among groups were assessed with
student's t tests.
[0095] Adenovirus Hexon Immunodetection The presence of adenovirus hexon in the treated tumor xenografts was assessed b y
immunofluorescence at the end of the experiment. Frozen A549 nodule specimens were
sections, fixed in 3% formaldehyde, and blocked with normal donkey serum for 30 min
at room temperature. Then goat anti-hexon antibody (Chemicon Inc., Temecula, CA) was
applied for 2 h at room temperature, followed by PBS rinse and incubation with Alexa
Fluor 488-labeled donkey anti-goat antibody (Molecular Probes, Eugene, OR) for 30
min at room temperature. The slides were then rinsed and counterstained with Hoechst
33342 (Molecular Probe) for 10 min, and analyzed under a fluorescent microscope (Leitz
Orthoplan).
[0096] Results After structural confirmation, the replication capacity of Ad5-Δ24RGD and Ad5Δ24
were compared in A549 cells. Cell monolayers were infected with low dose of each virus
(0.01 viral particles/cell), and were maintained in media with BrdU throughout the
8-day incubation period. The encapsidated viral DNA was purified on days 2, 4, 6,
and 8 postinfection. Viral DNA corresponding to 6x10
5 cells was analyzed by Southwestern blot using anti-BrdU antibody. As indicated by
the BrdU incorporated into replicating viral DNA, Ad5-Δ24RGD propagation was more
efficient than that of Ad5-Δ24 (Figure 18). The Ad5-Δ24RGD DNA can be detected not
only sooner (day 6) compared to Ad5-Δ24 DNA (day 8), but in greater amounts. Thus,
the infectivity advantage conferred by RGD incorporation into the fiber knob increased
adenovirus propagation in target cells. As this tropism modification would not be
anticipated to alter fundamental aspects of the viral replication cycle, this effect
was likely achieved exclusively on the basis of the infectivity enhancement allowed
by routing the virus through CAR-independent pathways.
[0097] Based on the previous experiment, the actual amount of infectious virus produced
by Ad5lucRGD, Ad5-Δ24, or Ad5-Δ24RGD in A549 cells at 8 days after infection were
quantified b y plaque assay. Ad5-Δ24RGD produced a viral yield of 3.75 x 10
9 pfu/ml, which was 43 times higher than that of its unmodified Ad5-Δ24 counterpart
(8.75 x 10
7 pfu/ml). No virus was obtained from the nonreplicative control Ad5lucRGD infected
cells. These results are consistent with the fact that modifying the fiber knob with
an RGD motif led to enhancement of viral infectivity and an increase in the production
of infectious adenovirus.
[0098] To demonstrate the increased lytic potency of Ad5-Δ24RGD, A549 and LNCaP cells were
infected with small amounts of each virus to allow multiple cycles of viral replication
over the ensuing 8 days, then stained the attached cells with crystal violet and counted
viable cells by XTT assay. In both cell lines, the fewest viable cells were detected
in the Ad5-Δ24RGD-infected group (Figure 19A and B). The cell lysis capacity of Ad5-Δ24RGD
is 7 times higher in A549, and 3.5 times higher in LNCaP compared to Ad5-Δ24. These
results demonstrate that the fiber knob modification enhanced adenoviral lytic potency
over that of the Ad5-Δ24 virus.
[0099] A goal of this study was to support the oncolytic superiority of infectivity enhanced
conditionally replicative adenovirus (CRAd) over that of unmodified adenoviruses
in vivo. Since low doses of virus allow several cycles of replication along with destruction
of tumor cells, even a single dose would produce an exponential rise in the number
of killed cells, which would extend to the entire tumor. In order to demonstrate this
hypothesis, A549 xenografts in nude mice were treated with a single i.t. injection
(10
9 viral particles) of one of the three viruses or with PBS. At 32 days after injection,
both CRAds demonstrated to have an oncolytic effect in the tumors opposite to those
treated with nonreplicative virus or with PBS (Ad5-Δ24, p<0.05; Ad5-Δ24RGD, p<0.01
compared to PBS group) (Figure 20A). Given these results, another experiment was performed
in which a 100-fold lower dose (10
7 viral particles) of the viruses were administered. This low-dose treatment demonstrated
that the oncolytic effect of Ad5-Δ24RGD was superior to that of Ad5-Δ24 (p<0.05).
These differences observed between high-dose and low-dose experiments suggest that
a threshold dose over 10
7 viral particles of Ad5-Δ24 is required to obtain an oncolytic effect in tumor nodules
(Figure 20B). To confirm that the CRAds were present in the tumor tissue, immunofluorescence
assays were used to detect the virus hexon in tumor samples collected after the low-dose
experiment (35 days postinjection). Ad5-Δ24RGD was present in the tumor nodules, as
was Ad5-Δ24 to a lesser extent. PBS and Ad5lucRGD treated nodules showed no hexon
signal (Figure 20C). These results corroborate that the partial reduction of tumor
mass was due to virus replication and that the RGD modification of the fiber knob
conferred infectivity and oncolysis advantage to a CRAd
in vivo.
[0100] Enhanced oncolytic potential was also demonstrated in a systemic context. A total
dose of 10
9 viral particles divided into two consecutive doses of 5x10
8/day of either Ad5lucRGD, Ad5-Δ24, Ad5-Δ24RGD, Ad5-wt, or PBS were injected in the
tail vein of nude mice bearing s.c. A549 xenografts. Figure 21 shows that modification
of the fiber to broaden the tropism of a replicative adenovirus improves the oncolytic
potential in a systemic delivery context.
[0101] Discussion Conditionally replicative adenoviruses (CRAds) are novel and promising agents for
cancer therapy. However, their efficacy is predicated upon efficient tumor infection,
specific replication, and lateral spread. The deficiency of coxsackie-adenovirus receptor
(CAR) in a variety of tumor targets is a limitation to adenovirus infection. In a
previous report, it was demonstrated that the insertion of an RGD motif into the HI
loop of the fiber knob of non-replicative adenoviruses enhances tumor infection [23,
64], indicating that CAR-independent entry represent a viable way to circumvent CAR
deficiency in some tumor types.
[0102] In this report, it was demonstrated that the genetic introduction of an RGD sequence
in the fiber of a CRAd allows CAR-independent infection that leads to the enhancement
of viral propagation and oncolytic effect
in vitro and
in vivo. The increased initial virus entry into the cells rendered by the RGD-modification
results in sooner detection and augmented yields of encapsidated DNA of Ad5-Δ24RGD
compared to the unmodified Ad5-Δ24 (Figure 18). As this tropism modification is not
anticipated to alter fundamental aspects of the viral replication cycle, this effect
was likely due to the infectivity enhancement allowed by delivering the virus through
CAR-independent pathways. Subsequently, studies of the oncolytic potency of CRAds
in two cell lines conclude that Ad5-Δ24RGD potency is higher than that of the unmodified
virus. Although the XTT assay was not sensitive enough to demonstrate the lytic effect
of Ad5-Δ24 compared to the non-replicative Ad5lucRGD, the crystal violet showed early
comet-like cytopathic areas in Ad5-Δ24-treated A549 and LNCaP cells, indicating the
presence of an incipient lytic effect, whereas Ad5lucRGD treated cells were intact
(Figure 19A). The less notable difference between Ad5-Δ24RGD and Ad5-Δ24 seen in LNCaP
cells is explained by the absence of the α
vβ
3 integrins [66], compensated by the presence of other types of RGD-binding integrins
(α
3β
1 and α
5β
1) [67] that were rapidly saturated (Figure 19).
[0103] Another object of the present invention was to demonstrate the superior oncolytic
effect of Ad5-Δ24RGD in an
in vivo model. To this end, A549 cells xenografted in nude mice were treated with single,
high dose (10
9 viral particles) i.t. injections of Ad5lucRGD, Ad5-Δ24, Ad5-Δ24RGD, or PBS, and the
results showed that both CRAds (modified and unmodified) yielded similar oncolysis
(Figure 20A). However, when a 100-fold lower dose (10
7 viral particles) was administered, it became clear that the oncolytic effect of Ad5-Δ24RGD
was higher than that of Ad5-Δ24 (
p<0.05) (Figure 20B). Furthermore, the observed oncolytic effects were correlated with
the presence of virus progeny in the tumor samples by immunofluorescent detection
of adenoviral hexon. Hexon was not detected in PBS (not shown) and Ad5lucRGD treated
nodules (Figure 20C, a), whereas it was detected throughout the tumors treated with
CRAds. The comparison between the two CRAds showed that fluorescence in Ad5-Δ24RGD
treated tumors was stronger than the one observed in Ad5-Δ24 treated tumors (Figure
20C, b and c). The lack of fluorescent staining in tumors treated with the non-replicative
control Ad5lucRGD indicates that the detected hexon belongs to the viral progeny of
Ad5-Δ24 and Ad5-Δ24RGD, and not to the initial inoculum. As regards to the high divergence
of the volumes of PBS and Ad5lucRGD treated tumors, factors such as highly heterogeneous
cell replication rates and hypoxic and necrotic areas are known to affect individual
tumor volume after a critical size is reached. These differences have been noted before
when using oncolytic viruses [68,69]. Nevertheless, total resolution of the tumors
in the s.c. xenograft model was seen only in some nodules treated with Ad5-Δ24RGD,
indicating that administration volume and schema adjustments, such as the ones suggested
recently by Heise and co-workers [70], might be necessary to achieve complete oncolysis.
[0104] As presented here and elsewhere [71], the efficacy of replication-competent viruses
employed as oncolytic agents can be improved at the level of infectivity. As other
tumor-binding peptides are isolated [71,72], modifications in addition to the RGD
insertion can be considered as well. Of note, the RGD-modification described here
does not preclude the binding of the fiber to CAR and the modified virus can enter
the cells through α
v integrins and CAR. One approach to improve specific tumor infection/transduction
would be the combination of CAR-ablation and tumor-specific ligands to redirect the
virus tropism. Recently, the adenovirus fiber amino acids crucial for CAR-binding
abrogation and new tumor-selective peptides have been defined [46, 72, 73]. This combination
will generate truly targeted viruses, and the efficiency of their propagation will
depend on the amount of the targeted receptor in the same way as the propagation of
the unmodified virus depends on CAR. This strategy could be very valuable when the
population to be targeted is homogeneous, such as endothelial cells of tumor vasculature.
[0105] Other aspects of adenovirus biology that can be improved are replication specificity,
tumor cell killing, and evasion from host immune responses. Tumor selectivity has
been the major area of research with the design of CRAds based on deletions of adenoviral
early genes and utilization of tumor-specific promoters [74, 75]. With regard to cell
killing capacity, the combination of oncolysis with suicide genes such as cytosine
deaminase and herpes simplex virus thymidine kinase has demonstrated to be superior
to either treatment alone [76-78]. In a similar way, the combination of oncolysis
with radiotherapy and chemotherapy has also proved to have better efficacy [78, 79].
Immune responses will play an important role in the ultimate outcome of oncolytic
virotherapy, an ideal scenario would favor a response that can destroy tumor cells,
and yet allow viral spread. The manipulation of the immune response against adenovirus
towards a Th1 type could lead in this direction [80]. The use of immunocompetent animals
will be needed for the study of immune response to adenovirus, and also ovine and
canine adenovirus could be useful for this purpose [81, 82].
[0106] Specifically targeted CRAds have theoretical attributes that could make them effective
via systemic administration: low toxicity due to lack of adsorption and replication
in normal cells and low effective dose due to their amplification. Whether these agents
have enough targeting/amplification potency to be efficacious through systemic administration
remains to be shown. To ascertain this question, the oncolytic efficiency of enhanced
infectivity CRAds administered via tail vein in mice would be determined. It seems
that not only the presence of CAR and αv integrin are important for adenovirus infection,
but anatomical and immunological barriers are also crucial when considering this route
of administration [83]. In particular, vector clearance by liver macrophages is a
major obstacle that has to be overcome. This can be attempted with targeting or other
strategies that change the physico-chemical properties of the virion such as PEGylation
[84]. The emerging picture is that of a targeted adenovirus that remains in circulation
for a sufficient period to achieve specific recognition of the target. In such a scenario,
the infectivity enhancement maneuvers described herein will clearly improve the therapeutic
gain achievable via CRAds.
EXAMPLE 9
Targeting endogenous receptors with chimeric replication-competent adenovirus vectors
[0107] Squamous cell carcinoma of the head and neck (SCCHN) expresses relatively low levels
of the primary adenovirus type 5 (Ad5) receptor, coxsackie-adenovirus receptor (CAR)
[64, 85]. This relative deficiency of CAR has predicated the development of CAR-independent
transduction strategies to make adenovirus-mediated cancer gene therapy more efficient
for this disease. CAR-independent transduction strategies have been made by a number
of methods including the development of adenovirus vectors containing chimeric knob
domains that alter the virus' target cell tropism [86, 87]. Recently it has been suggested
that the receptor for adenovirus type 3 (Ad3) is more highly expressed in SCCHN compared
to the Ad5 receptor [88], thereby making the Ad3 receptor as excellent alternative
target for SCCHN. Therefore, it is hypothesized that a chimeric Ad5 vector containing
Ad3 knob domains would have preferential targeting to SCCHN compared to an Ad5 vector
containing only Ad5 knob domain.
[0108] SCCHN cells were infected with equal amount of two oncolytic Ad5 vectors, Ad5Luc3
or Ad5/3Luc3. Ad5Luc3 contains an Ad5 knob domain that necessitates CAR-dependent
transduction. Alternatively, Ad5/3Luc3 contains an Ad3 knob domain that utilizes a
CAR-independent pathway. The apparent disproportion of Ad5 receptors and Ad3 receptors
on this tumor type resulted in more efficient infection and replication of Ad5/3Luc3
compared to Ad5Luc3. As shown in Figure 22, the ability of Ad5/3Luc3 to more efficiently
infect and replicate resulted in a dramatic increase in the oncolytic effect of this
virus. Thus, infectivity-enhancement via knob chimerism also improves the oncolytic
potency of the CRAd therapy.
EXAMPLE 10 (BACKGROUND EXAMPLE)
Evaluation of tumor-selective E2 and E4 functions
[0109] Also Described is that tumor-selective regulation of E4 and E2 can confer tumor-selective
replication to adenovirus. It has previously been shown that E4-deleted adenoviruses
can be transcomplemented by conjugating an E4 expression plasmid into their capsid
[44]. In this regard, plasmids such as pCEP-ORF6, that contain the E4 ORF6 under a
constitutive promoter, can be used to transcomplement E4 deleted viruses, such as
d11014. In order to achieve tumor-selective expression of E4-ORF6, tumor-specific
promoters are substituted for the CMV promoter. Among several tumor or tissue selective
promoters that have been used in restricting expression of genes to tumor cells, the
promoter of the prostate specific antigen (PSA) is used initially. PSA is expressed
in prostate cells and has been used to direct expression of TK to prostate tumors
[56]. This promoter was chosen to control E4 and E2 in the context of replicative
adenoviruses because it has already been used to control E1 in this context (obtained
from Dr. Chris Baigma [57]). The promoter is subcloned in front of the E4ORF6 in plasmid
pCEPORF6 to obtain a pPSA-ORF6 expression plasmid. To evaluate the conditional replicative
phenotype of a PSA-ORF6-regulated virus, this plasmid is conjugated with the E4-deleted
virus, d11014. Conjugates with pCEP-ORF6 or irrelevant plasmids are used as positive
and negative controls, respectively. These Ad5d11014 adenovirus-polylysine-plasmid
conjugates are used to infect tumor cell lines that express prostate specific antigen,
such as LNCaP, and cell lines that do not express prostate specific antigen, such
as DU145 or PC3. In time course experiments, viral replication is measured at the
DNA level by Southern blot. The amount of virus produced from the molecular conjugates
is measured by plaque assays in W162 cells [44]. d11014 DNA replication and virus
production is observed in all cell lines when using pCEP-ORF6, but only in the PSA-expressing
cell line, LNCaP, when using pPSA-ORF6.
[0110] These results indicate whether the E4 can be used to control the replication of E4-deleted
adenoviruses and whether the PSA promoter restricts this replication to cells expressing
PSA. As a reference background and for comparison purposes, a PSA-E1 plasmid is constructed
as a derivative of the E1 constructs used in the replication-enabling system, such
as pE1FR. An E1-deleted vector and 293 cells are used to evaluate the selective replication
conditional to the expression of prostate specific antigen. The differential propagation
and the levels of virus production obtained with PSA-E4 and PSA-E1 regulation indicates
which of these regulatory mechanism renders better selectivity of replication when
used independently.
[0111] A similar strategy is followed to achieve selective expression of E2. E2-expression
plasmids transcomplement E2-defective viruses using the replication-enabling system.
The function of the three open reading frames of E2 (DNA binding protein, terminal
protein, and polymerase) are subcloned into separate plasmids. These open reading
frames of E2 are then placed under the regulation of the PSA promoter. Appropriate
E2-defective mutant viruses, such as Ad5ts125 which contains a temperature-sensitive
mutation of E2-DBP, are used to construct the corresponding adenovirus-polylysine-DNA
conjugates. As above, these conjugates are used to infect LNCaP, DU145 and PC3 cell
lines. Viral DNA replication is measured by Southern blot. Cell lines expressing E2
are used to measure the amount of E2-deleted viruses produced by plaque assays [58].
EXAMPLE 11 (BACKGROUND EXAMPLE)
Construction of RGD-fiber adenoviruses with tumor-selective E4 or E2 transcriptional
units
[0112] Also described is the combination of the fiber modification with the replication-regulatory
mechanisms. Towards this direction, the E4 and/or E2 construct(s) that demonstrated
conditional regulation in the replication-enabling system replace the endogenous viral
E4 and/or E2 transcriptional unit. For this, the region that is to be modified is
subcloned into a small plasmid to facilitate its manipulation. This region is then
removed from the plasmid and co-transformed into competent bacteria with a plasmid
containing the complete viral genome. The recombination between the viral sequences
flanking the modified region and the homologous sequences in the larger plasmid results
in the incorporation of the modified region into the adenoviral genome. Before the
co-transformation step, it is necessary to cut the large plasmid in a unique site
located in the middle of the homology region to avoid the presence of colonies derived
from the large plasmid. As there are no available unique sites in the E4 or E2 promoter
region, the RecA-assisted cleavage method will be used to restrict in the proper site
[59].
[0113] This method involves three steps: first, an oligonucleotide spanning the site to
be cut in the E2 or E4 promoter region is annealed to the large plasmid in the presence
of RecA protein (New England Biolabs, Beverly, MA) to form a three-stranded segment.
Second, a methylase recognizing this site is then used to methylate all the sites
in the large plasmid except the one protected by the oligonucleotide. Finally, the
oligonucleotide is removed by heat and the corresponding restriction endonuclease
is used to cut the unique non-methylated site. Common site-specific methylases, such
as
AluI,
HaeIII,
HhaI,
HpaII, etc, and the corresponding restriction endonucleases are purchased from New England
Biolabs. Plasmids containing the wild type fiber and plasmids with the modified RGD
fiber are used. After the homologous recombination step, the larger plasmids containing
the viral genomes with the substituted E4 or E2 regions are cut with
PacI to release the viral genome. Finally, the viruses are obtained by transfection into
E4 or E2 complementing cell lines. Viruses are amplified and purified by double CsCl
gradient, and titered in these cell lines for
in vitro and
in vivo experiments. The presence of the E4 or E2 transcription unit regulated with the tumor-specific
promoter and of the mutated fiber is analyzed by PCR as well as by sequencing of viral
DNA isolated from CsCl-purified virions.
EXAMPLE 12 (BACKGROUND EXAMPLE)
Localized models
[0114] Subcutaneous tumor nodules are established using the LNCaP and DU145 cell lines.
Cells (10
7) are mixed 1:1 with Matrigel (Collaborative Bioproducts), loaded into syringes and
injected subcutaneously in a total volume of 200 µl into the front flanks of athymic
nude mice (2 x 10
6 cells per engraftment site). Initially, three pairs of viruses are compared: PSAE4-RGD
versus PSAE4; PSA-E2 versus RGD-PSAE2; and PSA-E1 versus RGD-PSAE1. In a second phase,
viruses with double E1/E4 or E1/E2 controlled transcriptional units are also analyzed.
Tumor nodules are injected with the appropriate adenovirus or vehicle control (PBS/10%
glycerol) when their volume (length x width 2 x 1/2) reaches 0.2 cm
3. Injections are with a Hamilton syringe in a volume of 20 µl (1/10 of tumor volume).
The amount of virus injected per tumor is adjusted from 10
4 pfus (plaque forming units) to 10
8 pfus by serial dilution. A series of experiments are done to measure the tumor volume
until regression or a maximum of 1 cm
3. Another series of experiment are performed to measure the intratumoral amount of
virus in a time course. This amount is measured by resecting the tumors and staining
sections with anti-hexon antibody (Chemicon) and by extracting the virus from the
tumors and measuring the viable virus in a plaque assay. In DU145 tumors, no therapeutic
effect is observed with the PSA-controlled viruses. In LNCaP tumors, smaller tumors
or complete tumor regressions is observed, and more intratumoral virus in tumors treated
with the PSA-controlled replicative viruses is observed when compared to the non-replicative
and vehicle control treated tumors. Smaller tumors or more frequent complete regressions
are observed, likely due to higher amounts of intratumoral virus with the RGD-modified
vector. These results demonstrate that the tumor-specific regulation of adenoviral
genes, such as E4, allows replication
in vivo in permissive tumors and also demonstrates the therapeutic advantage of the RGD modification
for a replicative adenovirus.
EXAMPLE 13
Local-regional and disseminated models
[0115] A murine model for ovarian cancer and liver metastases of colon cancer has been developed.
These models have been useful in demonstrating the utility of the RGD modification
for non-replicative adenoviral vectors, and therefore, are used herein in the context
of replicative adenoviruses containing tumor-specific promoters. The ovarian cancer
model is a local-regional model that uses the human ovarian cancer cell line, SKOV3.ip1.
As these cells express SLPI, this model is useful to evaluate viruses in which the
E4 or E2 gene is regulated by the SLPI promoter. This cell line has been serially
passaged in SCID mice and selected for its ability to grow aggressively in the peritoneum
[62]. Female SCID mice receive an i.p. injection of 2 x 10
7 cells in 0.5 ml of serum-free medium. Five days after injection, tumors start to
form at the peritoneum surface and the progression of the disease mimics the human
disease. One week after injection, the viruses (RGD-modified or the unmodified control)
will be injected i.p. in a volume of 100 µl. The therapeutic viruses are also intravenously
injected. Virus dosages range from 10
4 pfus to 10
8 pfus. The therapeutic effect is measured b y surviving cells. The amount of replicating
virus is measured in peritoneal lavages in time course experiments.
[0116] The model of colon cancer liver metastases uses LS174T human colon cancer cells and
allows for expression of genes under the CEA promoter. In a surgical operation, cells
(5 X 10
8) are injected along the long axis of the spleen. Five minutes after the injection,
the splenic vessels are tied off and the spleen is cut and removed. After the abdominal
wall and skin are sutured, extensive liver metastases form in 7-10 days. Tail vein
injection of RGD-modified and unmodified replicative adenoviruses to demonstrate systemic
treatment using this model. Liver metastases are counted in a time course experiment
after virus injection.
[0117] These experiments provide
in vivo data demonstrating selective replication and oncolytic potency of replicative vectors
with restricted replication and enhanced infectivity. The RGD modification in the
fiber of replicative adenoviruses, along with tumor-selective expression of E4 or
E2 in addition to E1, increases the virus' propagation efficacy and ultimately its
therapeutic efficacy.
EXAMPLE 14
Vertebrate Animals
[0118] Mice containing human tumors are used to evaluate the therapeutic potential of adenoviruses
with enhanced infectivity and tumor-selective replication. Three types of models are
used: subcutaneous engrafted cell lines (prostate LNCaP and DU145), diffuse intraperitoneal
engraftments (ovarian SKOV3-ipl), and liver metastases (colorectal carcinoma cell
line LS174T). Adult (6-8 week old) athymic nu/nu mice are used in the subcutaneous
and metastatic models and SCID mice are used in the intraperitoneal model. Except
for the prostate cell lines, female mice are used. Treatments include the RGD-modified,
non-modified and vehicle control in a single injection for each dose. Intratumoral,
intraperitoneal or intravenous administration of the viruses (according to the model
used) is performed with unsedated mice using gentle physical restraint. All mice are
euthanized at the conclusion of all experiments by CO
2 vapor sedation followed by Phenobarbital overdose.
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[0120] Any patents or publications mentioned in this specification are indicative of the
levels of those skilled in the art to which the invention pertains. Further, these
patents and publications are incorporated by reference herein to the same extent as
if each individual publication was specifically and individually indicated to be incorporated
by reference.
[0121] One skilled in the art will appreciate readily that the present invention is well
adapted to carry out the objects and obtain the ends and advantages mentioned, as
well as those objects, ends and advantages inherent herein. The present examples,
along with the methods, procedures, treatments, molecules, and specific compounds
described herein are presently representative of preferred embodiments, are exemplary,
and are not intended as limitations on the scope of the invention. Changes therein
and other uses will occur to those skilled in the art which are encompassed within
the spirit of the invention as defined by the scope of the claims.
SEQUENCE LISTING
[0122]
<110> Curiel, David T.
Krasnykh, Victor N.
Dmitriev, Igor
Alemany, Ramon
<120> Infectivity-Enhanced Conditionally-Replicative Adenovirus And Uses Thereof
<130> D6219PCT
<141> 2000-05-12
<150> US 60/133,634
<151> 1999-05-12
<160> 5
<210> 1
<211> 9
<212> PRT
<213> artificial sequence
<220>
<223> Amino acid sequence of an RGD peptide which binds with high affinity to some
integrins the encoding sequence of which is introduced into the HI loop of the fiber
knob
<400> 1

<210> 2
<211> 20
<212> DNA
<213> artificial sequence
<220>
<223> FiberUp primer used to verify the presence of the RGD motif in the modified
fiber.
<400> 2
caaacgctgt tggatttatg 20
<210> 3
<211> 21
<212> DNA
<213> artificial sequence
<220>
<223> FiberDown primer used to verify the presence of the RGD motif in the modified
fiber.
<400> 3
gtgtaagagg atgtggcaaa t 21
<210> 4
<211> 20
<212> DNA
<213> artificial sequence
<220>
<223> Ela-1 primer used to verify the Δ24 base pair deletion from the E1A gene in
the modified fiber.
<400> 4
attaccgaag aaatggccgc 20
<210> 5
<211> 19
<212> DNA
<213> artificial sequence
<220>
<223> E1a-2 primer used to verify the Δ24 base pair deletion from the E1A gene in
the modified fiber.
<400> 5
ccatttaaca cgccatgca 19