FIELD OF THE INVENTION
[0001] The present invention relates to antibodies that bind to human insulin-like growth
factor-I receptor (IGF-I receptor). More particularly, the invention relates to anti-IGF-I
receptor antibodies that inhibit the cellular functions of the IGF-I receptor. Still
more particularly, the invention relates to anti-IGF-I receptor antibodies that antagonize
the effects of IGF-I, IGF-II and serum on the growth and survival of tumorcells and
which are substantially devoid of agonist activity. The invention also relates to
fragments of said antibodies, humanized and resurfaced versions of said antibodies,
conjugates of said antibodies and the uses of same in diagnostic, research and therapeutic
applications. The invention further relates to improved antibodies or fragments thereof
that are made from the above-described antibodies and fragments thereof. In another
aspect, the invention relates to a polynucleotide encoding the antibodies or fragments
thereof, and to vectors comprising the polynucleotides.
BACKGROUND OF THE INVENTION
[0002] Insulin-like growth factor-I receptor (IGF-I receptor) is a transmembrane heterotetrameric
protein, which has two extracellular alpha chains and two membrane-spanning beta chains
in a disulfide-linked β-α-α-β configuration. The binding of the ligands, which are
insulin-like growth-factor-I (IGF-I) and insulin-like growth factor-II (IGF-II), by
the extracellular domain of IGF-I receptor activates its intracellular tyrosine kinase
domain resulting in autophosphorylation of the receptor and substrate phosphorylation.
The IGF-I receptor is homologous to insulin receptor, having a high sequence similarity
of 84% in the beta chain tyrosine kinase domain and a low sequence similarity of 48%
in the alpha chain extracellular cysteine rich domain (
Ulrich, A. et al., 1986, EMBO, 5, 2503-2512;
Fujita-Yamaguchi, Y. et al., 1986, J. Biol. Chem., 261, 16727-16731;
LeRoith, D. et al., 1995, Endocrine Reviews, 16, 143-163). The IGF-I receptor and its ligands (IGF-I and IGF-II) play important roles in numerous
physiological processes including growth and development during embryogenesis, metabolism,
cellular proliferation and cell differentiation in adults (
LeRoith, D., 2000, Endocrinology, 141, 1287-1288;
LeRoith, D., 1997, New England J. Med., 336, 633-640).
[0003] IGF-I and IGF-II function both as endocrine hormones in the blood, where they are
predominantly present in complexes with IGF-binding proteins, and as paracrine and
autocrine growth factors that are produced locally (
Humbel, R. E., 1990, Eur. J. Biochem., 190,445-462;
Cohick, W. S. and Clemmons, D. R., 1993, Annu. Rev. Physiol. 55,131-153).
[0004] The IGF-I receptor has been implicated in promoting growth, transformation and survival
oftumorcells (
Baserga, R. et al., 1997, Biochem. Biophys. Acta, 1332, F105-F126;
Blakesley, V. A. et al., 1997, Journal of Endocrinolgy, 152, 339-344;
Kaleko, M., Rutter, W. J., and Miller, A. D. 1990, Mol. Cell. Biol., 10, 464-473). Thus, several types of tumors are known to express higher than normal levels of
IGF-I receptor, including breast cancer, colon cancer, ovarian carcinoma, synovial
sarcoma and pancreatic cancer (
Khandwala, H. M. et al., 2000, Endocrine Reviews, 21,215-244;
Werner, H. and LeRoith, D., 1996, Adv. Cancer Res., 68,183-223;
Happerfield, L. C. et al., 1997, J. Pathol., 183, 412-417;
Frier, S. et al., 1999, Gut, 44, 704-708;
van Dam, P. A. et al., 1994, J. Clin. Pathol., 47, 914-919;
Xie, Y. et al., 1999, Cancer Res., 59, 3588-3591;
Bergmann, U. et al., 1995, Cancer Res., 55, 2007-2011).
In vitro, IGF-I and IGF-II have been shown to be potent mitogens for several human tumor cell
lines such as lung cancer, breast cancer, colon cancer, osteosarcoma and cervical
cancer (
Ankrapp, D. P. and Bevan, D. R., 1993, Cancer Res., 53, 3399-3404;
Cullen, K. J., 1990, Cancer Res., 50, 48-53;
Hermanto, U. et al., 2000, Cell Grouwth & Differentiation, 11, 655-664;
Guo, Y. S. et al., 1995, J. Am. Coll. Surg., 181, 145-154;
Kappel, C. C. et al., 1994, Cancer Res., 54, 2803-2807;
Steller, M. A. et al., 1996, Cancer Res., 56, 1761-1765). Several of these tumors and tumor cell lines also express high levels of IGF-I
or IGF-II, which may stimulate their growth in an autocrine or paracrine manner (
Quinn, K. A. et al., 1996, J. Biol. Chem., 271, 11477-11483).
[0005] Epidemiological studies have shown a correlation of elevated plasma level of IGF-I
(and lower level of IGF-binding protein-3) with increased risk for prostate cancer,
colon cancer, lung cancer and breast cancer (
Chan, J. M. et al., 1998, Science, 279, 563-566;
Wolk, A. et al., 1998, J. Natl. Cancer Inst., 90, 911-915;
Ma, J. et al., 1999, J. Natl. Cancer Inst., 91, 620-625;
Yu, H. et al., 1999, J. Natl. Cancer Inst., 91, 151-156;
Hankinson, S. E. et al., 1998, Lancet, 351, 1393-1396). Strategies to lower the IGF-I level in plasma or to inhibit the function of IGF-I
receptor have been suggested for cancer prevention (
Wu, Y. et al., 2002, Cancer Res., 62, 1030-1035;
Grimberg, A and Cohen P., 2000, J. Cell. Physiol., 183, 1-9).
[0006] The IGF-I receptor protects tumor cells from apoptosis caused by growth factor deprivation,
anchorage independence or cytotoxic drug treatment (
Navarro, M. and Baserga, R., 2001, Endocrinology, 142, 1073-1081;
Baserga, R. et al.,1997, Biochem. Biophys. Acta, 1332, F105-F126). The domains of IGF-I receptor that are critical for its mitogenic, transforming
and anti-apoptotic activities have been identified by mutational analysis.
[0007] For example, the tyrosine 1251 residue of IGF-I receptor has been identified as critical
for anti-apoptotic and transformation activities but not for its mitogenic activity
(
O'Connor, R. et al., 1997, Mol. Cell. Biol., 17, 427-435;
Miura, M. et al., 1995, J. Biol. Chem., 270, 22639-22644). The intracellular signaling pathway of ligand-activated IGF-I receptor involves
phosphorylation of tyrosine residues of insulin receptor substrates (IRS-1 and IRS-2),
which recruit phosphatidylinositol-3-kinase (PI-3-kinase) to the membrane. The membrane-bound
phospholipid products of PI-3-kinase activate a serine/threonine kinase Akt, whose
substrates include the pro-apoptotic protein BAD which is phosphorylated to an inactive
state (
Datta, S. R., Brunet, A. and Greenberg, M. E., 1999, Genes & Development, 13, 2905-2927;
Kulik, G., Klippel, A. and Weber, M. J., 1997, Mol. Cell. Biol. 17, 1595-1606). The mitogenic signaling of IGF-I receptor in MCF-7 human breast cancer cells requires
PI-3-kinase and is independent of mitogen-activated protein kinase, whereas the survival
signaling in differentiated rat pheochromocytoma PC12 cells requires both PI-3-kinase
and mitogen-activated protein kinase pathways (
Dufoumy, B. et al., 1997, J. Biol. Chem., 272, 31163-31171;
Parrizas, M., Saltiel, A. R. and LeRoith, D., 1997, J. Biol. Chem., 272, 154-161).
[0008] Down-regulation of IGF-I receptor level by anti-sense strategies has been shown to
reduce the tumorigenicity of several tumor cell lines
in vivo and
in vitro, such as melanoma, lung carcinoma, ovarian cancer, glioblastoma, neuroblastoma and
rhabdomyosarcoma (
Resnicoff, M. et al., 1994, Cancer Res., 54, 4848-4850;
Lee, C.-T. et al., 1996, Cancer Res., 56, 3038-3041;
Muller, M. et al., 1998, Int. J. Cancer, 77, 567-571;
Trojan, J. et al., 1993, Science, 259, 94-97;
Liu, X. et al., 1998, Cancer Res., 58, 5432-5438;
Shapiro, D. N. et al., 1994, J. Clin. Invest., 94, 1235-1242). Likewise, a dominant negative mutant of IGF-I receptor has been reported to reduce
the tumorigenicity
in vivo and growth
in vitro of transformed Rat-1 cells overexpressing IGF-I receptor (
Prager, D. et al., 1994, Proc. Natl. Acad. Sci. USA, 91, 2181-2185).
[0009] Tumor cells expressing an antisense to the IGF-I receptor mRNA undergo massive apoptosis
when injected into animals in biodiffusion chambers. This observation makes the IGF-I
receptor an attractive therapeutic target, based upon the hypothesis that tumor cells
are more susceptible than normal cells to apoptosis by inhibition of IGF-I receptor
(
Resnicoff, M. et al., 1995, Cancer Res., 55, 2463-2469;
Baserga, R., 1995, Cancer Res., 55, 249-252).
[0010] Another strategy to inhibit the function of IGF-I receptor in tumor cells has been
to use anti-IGF-I receptor antibodies which bind to the extracellular domains of IGF-I
receptor and inhibit its activation. Several attempts have been reported to develop
mouse monoclonal antibodies against IGF-I receptor, of which two inhibitory antibodies
- IR3 and 1H7 - are available and their use has been reported in several IGF-I receptor
studies.
[0011] The IR3 antibody was developed using a partially purified placental preparation of
insulin receptor to immunize mice, which yielded an antibody, IR1, that was selective
for binding insulin receptor, and two antibodies, IR2 and IR3, that showed preferential
immunoprecipitation of IGF-I receptor (somatomedin-C receptor) but also weak immunoprecipitation
of insulin receptor (
Kull, F. C. et al., 1983, J. Biol. Chem., 258, 6561-6566).
[0012] The 1H7 antibody was developed by immunizing mice with purified placental preparation
of IGF-I receptor, which yielded the inhibitory antibody 1H7 in addition to three
stimulatory antibodies (
Li, S.-L. et al., 1993, Biochem. Biophys. Res. Commun., 196, 92-98;
Xiong, L. et al., 1992, Proc. Natl. Acad. Sci. USA, 89, 5356-5360).
[0013] In another report, a panel of mouse monoclonal antibodies specific for human IGF-I
receptor were obtained by immunization of mice with transfected 3T3 cells expressing
high levels of IGF-I receptor, which were categorized into seven groups by binding
competition studies and by their inhibition or stimulation of IGF-I binding to transfected
3T3 cells (
Soos, M. A. et al., 1992, J. Biol. Chem., 267, 12955-12963).
[0014] Thus, although IR3 antibody is the most commonly used inhibitory antibody for IGF-I
receptor studies
in vitro, it suffers from the drawback that it exhibits agonistic activity in transfected 3T3
and CHO cells expressing human IGF-I receptor (
Kato, H. et al., 1993, J. Biol. Chem., 268, 2655-2661;
Steele-Perkins, G. and Roth, R. A., 1990, Biochem. Biophys. Res. Commun., 171, 1244-1251 Similarly, among the panel of antibodies developed by Soos et al., the most inhibitory
antibodies 24-57 and 24-60 also showed agonistic activities in the transfected 3T3
cells (
Soos, M. A. et al., 1992, J. Biol. Chem., 267, 12955-12963). Although, IR3 antibody is reported to inhibit the binding of IGF-I (but not IGF-II)
to expressed receptors in intact cells and after solubilization, it is shown to inhibit
the ability of both IGF-I and IGF-II to stimulate DNA synthesis in cells
in vitro (
Steele-Perkins, G. and Roth, R. A., 1990, Biochem. Biophys. Res. Commun., 171, 1244-1251). The binding epitope of IR3 antibody has been inferred from chimeric insulin-IGF-I
receptor constructs to be the 223-274 region of IGF-I receptor (
Gustafson, T. A. and Rutter, W. J., 1990, J. Biol. Chem., 265, 18663-18667;
Soos, M. A. et al., 1992, J. Biol. Chem., 267, 12955-12963).
[0015] The MCF-7 human breast cancer cell line is typically used as a model cell line to
demonstrate the growth response of IGF-I and IGF-II
in vitro (
Dufourny, B. et al., 1997, J. Biol. Chem., 272, 31163-31171). In MCF-7 cells, the IR3 antibody incompletely blocks the stimulatory effect of
exogenously added IGF-I and IGF-II in serum-free conditions by approximately 80%.
Also, the IR3 antibody does not significantly inhibit (less than 25%) the growth of
MCF-7 cells in 10% serum (
Cullen, K. J. et al., 1990, Cancer Res., 50, 48-53). This weak inhibition of serum-stimulated growth of MCF-7 cells by IR3 antibody
in vitro may be related to the results of an
in vivo study in which IR3 antibody treatment did not significantly inhibit the growth of
a MCF-7 xenograft in nude mice (
Arteaga, C. L. et al., 1989, J. Clin. Invest., 84, 1418-1423).
[0016] Because of the weak agonistic activities of the IR3 and other reported antibodies,
and their inability to significantly inhibit the growth of tumor cells such as MCF-7
cells in the more physiological condition of serum-stimulation (instead of stimulation
by exogenously added IGF-I or IGF-II in serum-free condition), there is a need for
new anti-IGF-I receptor antibodies which significantly inhibit the serum-stimulated
growth of tumorcells butwhich do not show significant agonistic activity by themselves.
Grant E.S. et al., 1998 (The Journal of Clinical Endocrinology and Metabolism. Vol.
83(9), p3252-3257,
W0O2/053596 to Pfizer, Inc., and Abgenix, Inc. and
WO03/059951 to Pierre Fabre Medicament, describe antibodies having affinity for IGF-IR.
SUMMARY OF THE INVENTION
[0017] The invention provides antibodies of claims 1 and 2 and conjugates of claim 4.
[0018] Accordingly, the antibodies, antibody fragments and antibody derivatives of this
invention specifically bind to insulin-like growth factor-I receptor and inhibit the
cellular activity of the receptor by antagonizing the receptor, and are also substantially
devoid of agonist activity towards the receptor.
[0019] Thus, in a first embodiment, there is provided murine antibody EM164, which is fully
characterized herein with respect to the amino acid sequences of both its light and
heavy chain variable regions, the cDNA sequences of the genes for the light and heavy
chain variable regions, the identification of its CDRs (complementarity-determining
regions), the identification of its surface amino acids, and means for its expression
in recombinant form.
[0020] In a second embodiment, there are provided resurfaced or humanized versions of antibody
EM164 wherein surface-exposed residues of the antibody or its fragments are replaced
in both light and heavy chains to more closely resemble known human antibody surfaces.
Such humanized antibodies may have increased utility, compared to murine EM 164, as
therapeutic or diagnostic agents. Humanized versions of antibody EM 164 are also fully
characterized herein with respectto their respective amino acid sequences of both
light and heavy chain variable regions, the DNA sequences of the genes for the light
and heavy chain variable regions, the identification of the CDRs, the identification
of their surface amino acids, and disclosure of a means for their expression in recombinant
form.
[0021] In a third embodiment, there is provided an antibody that is capable of inhibiting
the growth of a cancer cell in which the IGF-I receptor levels are elevated by greater
than about 80% in the presence of a growth stimulant such as, for example, serum,
insulin-like growth factor-I and insulin-like growth factor-II.
[0022] In a fourth embodiment, there is provided an antibody or antibody fragment that specifically
binds to an insulin-like growth factor-I receptor having a heavy chain including CDRs
having amino acid sequences represented by SEQ ID NOS:1-3, respectively:
| SYWMH |
(SEQ ID NO:1), |
| EINPSNGRTNYNEKFKR |
(SEQ ID NO:2), |
| GRPDYYGSSKWYFDV |
(SEQ ID NO:3); |
and having a light chain that comprises CDRs having amino acid sequences represented
by SECT ID NOS:4-6:
| RSSQSIVHSNVNTYLE |
(SEQ ID NO:4); |
| KVSNRFS |
(SEQ ID NO:5); |
| FQGSHVPPT |
(SEQ ID NO:6) |
and wherein, said isolated antibody or fragment thereof is an antagonist of said receptor
and is devoid of agoinst activity toward said receptor.
[0023] In a fifth embodiment, there are provided antibodies having a heavy chain that has
an amino acid sequence represented by SEQ ID NO:7.

[0024] Similarly, there are provided antibodies having a light chain that has an amino acid
sequence represented by SEO ID NO:8:
| DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNVNTYLBWYLQKPGQSPKLLIY KVSNRFSGVPDRFSGSGSGTDFTLRISRVEABDLGIYYCFQGSHVPPTFGGGTK
LEIKR (SEQ ID NO:8). |
[0025] In a sixth embodiment, antibodies are provided having a humanized or resurfaced light
chain variable region having an amino acid sequence corresponding to one of SEQ ID
NOS:- 9-12:
| DWMTQTPLSLPVSLGDPASISCRSSQSIVHSNVNTYLEWYLQKPGQSPRLLIY KVSNRFSGVPDRFSGSGAGTDFTLRISRVEAEDLGIYYCFQGSHVPPTFGGGT
KLEIICR (SEQ ID NO:9); |
| DVLMTQTPLSLPVSLGDPASISCRSSQSIVHSNVNTYLEWYLQKPGQSPKLLIY KVSNRFSGVPDRFSGSGAGTDFTLRISRVEAEDLGIYYCFQGSHVPPTFGGGT
KLEIKR (SEQ 7D NO:10); |
| DVLMTQTPLSLPVSLGDPASISCRSSQSNHSNVNTYLEWYLQKPGQSPRLLIY KVSNRFSGVPDRFSGSGAGTDFTLRISRVEAEDLGIYYCFQGSHVPPTFGGGT
KLEIKR (SEQ ID NO:11); or |
| DWMTQTPLSLPVSLGDPASISCRSSQSIVHSNVNTYLEWYLQKPGQSPKLLIY KVSNRFSGVPDRFSGSGAGTDFTLRISRVEAEDLGIYYCFQGSHVPPTFGGGT
KLEIKR (SEQ ID NO:12). |
[0026] Similarly, antibodies and provided having a humanized or resurfaced heavy chain variable
region having an amino acid sequence corresponding to SEQ ID NO:13:
| QVQLVQSGAEWKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIG EINPSNGRTNYNQKFQGKATLTVDKSSSTAYMQLSSLTSEDSAVYYFARGR
PDYYGSSKWYFDVWGQGTTVTVSS (SEQ ID NO:13). |
[0027] The present invention further provides conjugates of said antibodies, wherein a cytotoxic
agent is covalently attached, directly or via a cleavable or non-cleavable linker,
to an antibody or epitope-binding fragment of an antibody of the present invention.
In preferred embodiments, the cytotoxic agent is a taxol, a maytansinoid, CC-1065
or a CC-1065 analog.
[0028] The present invention further provides for antibodies or fragments thereof that are
further labeled for use in research or diagnostic applications. In preferred embodiments,
the label is a radiolabel, a fluorophore, a chormophore, an imaging agent or a metal
ion.
[0029] A method for diagnosis may comprise the use of said labeled antibodies or fragments
administered to a subject suspected of having a cancer, wherein the distribution of
the label within the body of the subject is measured or monitored.
[0030] In a eighth embodiment, the invention provides medicaments and compositions for the
treatment of a subject having a cancer in which the IGF-I receptor levels are elevated,
comprising an antibody, antibody fragment or antibody conjugate of the present invention,
either alone or in combination with other cytotoxic or therapeutic agents. The cancer
can be one or more of, for example, breast cancer, colon cancer, ovarian carcinoma,
osteosarcoma, cervical cancer, prostate cancer, lung cancer, synovial carcinoma, pancreatic
cancer, or other cancer yet to be determined in which IGF-I receptor levels are elevated.
BRIEF DESCRIPTION OF THE FIGURES
[0031] FIGURE 1 shows fluorescence activated cell sorting (FACS) analysis of the specific
binding of purified EM164 antibody to cells overexpressing human Y1251 F IGF-I receptor
or human insulin receptor.
[0032] FIGURE 2 shows a binding titration curve for the binding of EM 164 antibody to biotinylated
human IG F-I receptor.
[0033] FIGURE 3 shows the inhibition of the binding of biotinylated IGF-I to human breast
cancer MCF-7 cells by EM 164 antibody.
[0034] FIGURE 4 shows the inhibition of IGF-I-stimulated autophosphorylation of IGF-I receptor
in MCF-7 cells by EM 164 antibody.
[0035] FIGURE 5 shows the inhibition of IGF-I-stimulated IRS-1-phosphorylation in MCF-7
cells by EM164 antibody.
[0036] FIGURE 6 shows the inhibition of IGF-I-stimulated signal transduction in SaOS-2 cells
by EM164 antibody.
[0037] FIGURE 7 shows the effect of EM 164 antibody on the growth and survival of MCF-7
cells under different growth conditions, as assessed by MTT assay.
[0038] FIGURE 8 shows the effect of EM164 antibody on the growth and survival of MCF-7 cells
in the presence of various serum concentrations.
[0039] FIGURE 9 shows the inhibition of IGF-1- and serum-stimulated growth and survival
of NCI-H838 cells by EM164 antibody.
[0040] FIGURE 10 shows the effect of treatment with EM164 antibody, taxol, or a combination
of EM164 antibody and taxol, on the growth of a Calu-6 lung cancer xenograft in mice.
[0041] FIGURE 11 shows competition between the binding of humanized EM164 antibody (v.1.0)
and murine EM164 antibody.
[0042] FIGURE 12 shows the cDNA (SEQ ID NO:49) and amino acid sequences (SEQ ID NO:50) of
the light chain leader and variable region of the murine anti-IGF-I receptor antibody
EM164. The arrow marks the start of framework 1. The 3 CDR sequences according to
Kabat are underlined.
[0043] FIGURE 13 shows the cDNA (SEQ ID NO:51) and amino acid sequences (SEQ ID NO:52) of
the heavy chain leader and variable region for the murine anti-IGF-I receptor antibody
EM164. The arrow marks the start of framework 1. The 3 CDR sequences according to
Kabat are underlined.
[0044] FIGURE 14 shows the light and heavy chain CDR amino acid sequences of antibody EM164
as determined from Chothia canonical class definitions. AbM modeling software definitions
for the heavy chain CDRs are also shown. Light Chain: CDR1 is SEQ ID NO:4, CDR2 is
SEQ ID NO:5, and CDR3 is SEQ ID NO:6. Heavy Chain: CDR1 is SEQ ID NO:1, CDR2 is SEQ
ID NO:2, and CDR3 is SEQ ID NO:3. AbM Heavy Chain: CDR1 is SEQ ID NO:53, CDR2 is SEQ
ID NO:54, and CDR3 is SEQ ID NO:55.
[0045] FIGURE 15 shows the light chain and heavy chain amino acid sequences for anti-IGF-I-receptor
antibody EM164 aligned with the germline sequences for the Cr1 (SEQ ID NO:56) and
J558.c (SEQ ID NO:57) genes. Dashes (-) indicate sequence identity.
[0046] FIGURE 16 shows the plasmids used to build and express the recombinant chimeric and
humanized EM164 antibodies. A) a light chain cloning plasmid, B) a heavy chain cloning
plasmid, C) a mammalian antibody expression plasmid.
[0047] FIGURE 17 shows the 10 most homologous amino acid sequences of the light chains screened
from the 127 antibodies in the set of structure files used to predict the surface
residues of EM164. em164 LC (SEQ ID NO:58), 2jel (SEQ ID NO:59), 2pcp (SEQ ID NO:60),
1 nqb (SEQ ID NO:61), 1kel (SEQ ID NO:62), 1 hyx (SEQ ID NO:63), 1 igf (SEQ ID NO:64),
1tet (SEQ ID NO:65), 1clz (SEQ ID NO:66), 1bln (SEQ ID NO:67), 1cly (SEQ ID NO:68),
Consensus (SEQ ID NO:69).
[0048] FIGURE 18 shows the 10 most homologous amino acid sequences of the heavy chains screened
from the 127 antibodies in the set of structure files used to predict the surface
residues of EM164. em164 HC (SEQ ID NO:70), 1nqb (SEQ ID NO:71), 1ngp (SEQ ID NO:72),
1fbi (SEQ ID NO:73), lafv (SEQ ID NO:74), 1yuh (SEQ ID NO:75), 1plg (SEQ ID NO:76),
1d5b (SEQ ID NO:77), 1ae6 (SEQ ID NO:78), 1axs (SEQ ID NO:79), 3hfl (SEQ ID NO:80),
Consensus (SEQ ID NO:81).
[0049] FIGURE 19 shows the average accessibility for each of the (A) light, and (B) heavy
chain variable region residues from the 10 most homologous structures. The numbers
represent the Kabat antibody sequence position numbers.
[0050] FIGURE 20 shows the light chain variable region amino acid sequences for murine EM164
(muEM164) and humanized EM164 (huEM164) antibodies. muEM164 (SEQ ID NO:82), huEM164
V1.0 (SEQ ID NO:83), huEM164 V1.1 (SEQ ID NO:84), huEM164 V1.2 (SEQ ID NO:85), huEM164
V1.3 (SEQ 10 NO:86).
[0051] FIGURE 21 shows the heavy chain variable region amino acid sequences for murine (muEM164,
SEQ ID NO: 87) and humanized EM164 antibodies (huEM164, SEQ ID NO:88).
[0052] FIGURE 22 shows the huEM164 v1.0 variable region DNA and amino acid sequences for
both the light (DNA, SEQ ID NO:89, amino acid SEQ ID NO:90) and heavy chains (DNA,
SEQ in NO:91, amino acid SEQ ID NO:92).
[0053] FIGURE 23 shows the light chain variable region DNA and amino acid sequences for
humanized EM164 v1.1 (DNA, SEQ ID NO:93; amino acid SEQ ID NO:94), v1.2 (DNA, SEQ
ID NO:95; amino acid SEQ ID NO:96) and v1.3 (DNA, SEQ ID NO:97; amino acid SEQ ID
NO:98).
[0054] FIGURE 24 shows the inhibition of IGF-I-stimulated growth and survival of MCF-7 cells
by humanized EM164 v1.0 antibody and murine EM164 antibody.
[0055] FIGURE 25 shows that EM164 suppresses IGF-I-stimulated cycling of MCF-7 cells.
[0056] FIGURE 26 shows that EM164 suppresses the anti-apoptotic effect of IGF-I and serum.
Treatment with EM164 results in apoptotic cell death as demonstrated by the increased
levels of cleaved CK18 protein.
[0057] FIGURE 27 shows the effect of treatment with EM164 antibody, gemcitabine, or a combination
of EM164 antibody and gemcitabine, on the growth of human BxPC-3 pancreatic cancer
xenografts in immunodeficient mice.
DETAILED DESCRIPTION OF THE INVENTION
[0058] The present inventors have discovered and improved novel antibodies that specifically
bind to the human insulin-like growth factor-I receptor (IGF-IR) on the cell surface.
The antibodies and fragments have the unique ability to inhibit the cellular functions
of the receptor without the capacity to activate the receptor themselves. Thus, while
previously known antibodies that specifically bind and inhibit IGF-IR also activate
the receptor even in the absence of IGF-IR ligands, the antibodies or fragments of
the present invention antagonize IGF-IR but are substantially devoid of agonist activity.
Furthermore, the antibodies and antibody fragments of the present invention inhibit
the growth of human tumor cells such as MCF-7 cells in the presence of serum by greater
than 80%, which is a higher degree of inhibition than is obtained using previously
known anti-IGF-IR antibodies.
[0059] The present invention proceeds from a murine anti-IGF-IR antibody, herein EM164,
that is fully characterized with respect to the amino acid sequences of both light
and heavy chains, the identification of the CDRs, the identification of surface amino
acids, and means for its expression in recombinant form.
[0060] The germline sequences are shown in Figure 15 aligned with the sequence of EM 164.
The comparison identifies probable somatic mutations in EM164, including one each
in CDR1 in the light chain and in CDR2 in the heavy chain.
[0061] The primary amino acid and DNA sequences of antibody EM164 light and heavy chains,
and of humanized versions, are disclosed herein. Antibodies and antibody fragments
may differ from antibody EM164 or the humanized derivatives in the amino acid sequences
of their scaffold, CDRs, light chain and heavy chain, and still fall within the scope
of the present invention.
[0062] The CDRs of antibody EM164 are identified by modeling and their molecular structures
have been predicted. Again, while the CDRs are important for epitope recognition,
they are not essential to the antibodies and fragments of the invention. Accordingly,
antibodies and fragments are provided that have improved properties produced by, for
example, affinity maturation of an antibody of the present invention.
[0063] Diverse antibodies and antibody fragments, as well as antibody mimics may be readily
produced by mutation, deletion and/or insertion within the variable and constant region
sequences that flank a particular set of CDRs. Thus, for example, different classes
of Ab are possible for a given set of CDRs by substitution of different heavy chains,
whereby, for example, IgG1-4, IgM, IgA1-2, IgD, IgE antibody types and isotypes may
be produced. Artificial antibodies may be produced by embedding a given set of CDRs
within an entirely synthetic framework. The term "variable" is used herein to describe
certain portions of the variable domains that differ in sequence among antibodies
and are used in the binding and specificity of each particular antibody for its antigen.
However, the variability is not usually evenly distributed through the variable domains
of the antibodies. It is typically concentrated in three segments called complementarity
determining regions (CDRs) or hypervariable regions both in the light chain and the
heavy chain variable domains. The more highly conserved portions of the variable domains
are called the framework (FR). The variable domains of heavy and light chains each
comprise four framework regions, largely adopting a beta-sheet configuration, connected
by three CDRs, which form loops connecting, and in some cases forming part of the
beta-sheet structure. The CDRs in each chain are held together in close proximity
by the FR regions and, with the CDRs from the other chain, contribute to the formation
of the antigen binding site of antibodies (
E. A. Kabat et al. Sequences of Proteins of Immunological Interest, fifth edition,
1991, NIH). The constant domains are not involved directly in binding an antibody to an antigen,
but exhibit various effectorfunctions, such as participation of the antibody in antibody-dependent
cellular toxicity.
[0064] Humanized antibodies, or antibodies adapted for non-rejection by other mammals, may
be produced using several technologies such as resurfacing and CDR grafting. In the
resurfacing technology, molecular modeling, statistical analysis and mutagenesis are
combined to adjust the non-CDR surfaces of variable regions to resemble the surfaces
of known antibodies of the target host. Strategies and methods for the resurfacing
of antibodies, and other methods for reducing immunogenicity of antibodies within
a different host, are disclosed in
US Patent 5,639,641, . In the CDR grafting technology, the murine heavy and light chain CDRs are grafted
into a fully human framework sequence.
[0066] Functional equivalents include polypeptides with amino acid sequences substantially
the same as the amino acid sequence of the variable or hypervariable regions of the
antibodies of the invention. "Substantially the same" as applied to an amino acid
sequence is defined herein as a sequence with at least about 90%, and more preferably
at least about 95% sequence identity to another amino acid sequence, as determined
by the FASTA search method in accordance with
Pearson and Lipman, Proc. Natl. Acad. Sci. USA 85, 2444-2448 (1988).
[0067] Chimerized antibodies preferably have constant regions derived substantially or exclusively
from human antibody constant regions and variable regions derived substantially or
exclusively from the sequence of the variable region from a mammal other than a human.
Humanized forms of the antibodies are made by substituting the complementarity determining
regions of, for example, a mouse antibody, into a human framework domain, e.g., see
PCT Pub. No. WO92/22653. Humanized antibodies preferably have constant regions and variable regions other
than the complementarity determining regions (CDRs) derived substantially or exclusively
from the corresponding human antibody regions and CDRs derived substantially or exclusively
from a mammal other than a human.
[0068] Functional equivalents also include single-chain antibody fragments, also known as
single-chain antibodies (scFvs). These fragments contain at least one fragment of
an antibody variable heavy-chain amino acid sequence (V
H) tethered to at least one fragment of an antibody variable light-chain sequence (V
L) with or without one or more interconnecting linkers. Such a linker may be a short,
flexible peptide selected to assure that the proper three-dimensional folding of the
(V
L) and (V
H) domains occurs once they are linked so as to maintain the target molecule binding-specificity
of the whole antibody from which the single-chain antibody fragment is derived. Generally,
the carboxyl terminus of the (V
L) or (V
H) sequence may be covalently linked by such a peptide linker to the amino acid terminus
of a complementary (V
L) and (VH) sequence. Single-chain antibody fragments may be generated by molecular
cloning, antibody phage display library or similar techniques. These proteins may
be produced either in eukaryotic cells or prokaryotic cells, including bacteria.
[0069] Single-chain antibody fragments contain amino acid sequences having at least one
of the variable or complementarity determining regions (CDRs) of the whole antibodies
described in this specification, but are lacking some or all of the constant domains
of those antibodies. These constant domains are not necessary for antigen binding,
but constitute a major portion of the structure of whole antibodies. Single-chain
antibody fragments may therefore overcome some of the problems associated with the
use of antibodies containing a part or all of a constant domain. For example, single-chain
antibody fragments tend to be free of undesired interactions between biological molecules
and the heavy-chain constant region, or other unwanted biological activity. Additionally,
single-chain antibody fragments are considerably smallerthan whole antibodies and
may therefore have greater capillary permeability than whole antibodies, allowing
single-chain antibody fragments to localize and bind to target antigen-binding sites
more efficiently. Also, antibody fragments can be produced on a relatively large scale
in prokaryotic cells, thus facilitating their production. Furthermore, the relatively
small size of single-chain antibody fragments makes them less likely to provoke an
immune response in a recipient than whole antibodies.
[0070] Functional equivalents further include fragments of antibodies that have the same,
or comparable binding characteristics to those of the whole antibody. Such fragments
may contain one or both Fab fragments or the F(ab')
2 fragment. Preferably the antibody fragments contain all six complementarity determining
regions of the whole antibody, although fragments containing fewer than all of such
regions, such as three, four or five CDRs, are also functional. Further, the functional
equivalents may be or may combine members of anyone of the following immunoglobulin
classes: IgG, IgM, IgA, IgD, or IgE, and the subclasses thereof.
[0071] The knowledge of the amino acid and nucleic acid sequences for the anti-IGF-I receptor
antibody EM164 and its humanized variants, which are described herein, can be used
to develop other antibodies which also bind to human IGF-I receptor and inhibit the
cellular functions of the IGF-I receptor. Several studies have surveyed the effects
of introducing one or more amino acid changes at various positions in the sequence
of an antibody, based on the knowledge of the primary antibody sequence, on its properties
such as binding and level of expression (
Yang, W. P. et al., 1995, J. Mol. Biol., 254, 392-403;
Rader, C. et al., 1998, Proc. Natl. Acad. Sci. USA, 95, 8910-8915;
Vaughan, T. J. et al., 1998, Nature Biotechnology, 16, 535-539).
[0072] In these studies, variants of the primary antibody have been generated by changing
the sequences of the heavy and light chain genes in the CDR1, CDR2, CDR3, or framework
regions, using methods such as oligonucleotide-mediated site-directed mutagenesis,
cassette mutagenesis, error-prone PCR, DNA shuffling, or mutator-strains of
E.
coli (
Vaughan, T. J. et al., 1998, Nature Biotechnology, 16, 535-539;
Adey, N. B. et al., 1996, Chapter 16, pp. 277-291, in "Phage Display of Peptides and
Proteins", Eds. Kay, B. K. et al., Academic Press). These methods of changing the sequence of the primary antibody have resulted in
improved affinities of the secondary antibodies (
Gram, H. et al., 1992, Proc. Natl. Acad. Sci. USA, 89, 3576-3580;
Boder, E. T. et al., 2000, Proc. Natl. Acad. Sci. USA, 97, 10701-10705;
Davies, J. and Riechmann, L., 1996, Immunotechnolgy, 2, 169-179;
Thompson, J. et al., 1996, J. Mol. Biol., 256, 77-88;
Short, M. K. et al., 2002, J. Biol. Chem., 277,16365-16370;
Furukawa, K. etal., 2001, J. Biol. Chem., 276, 27622-27628).
[0073] By a similar directed strategy of changing one or more amino acid residues of the
antibody, the antibody sequences described in this invention can be used to develop
anti-IGF-I receptor antibodies with improved functions.
[0074] The conjugates of the present invention comprise the antibody, fragments, and their
analogs as disclosed herein, linked to a cytotoxic agent. Preferred cytotoxic agents
are maytansinoids, taxanes and analogs of CC-1 065. The conjugates can be prepared
by
in vitro methods. In order to link the cytotoxic agent to the antibody, a linking group is
used. Suitable linking groups are well known in the art and include disulfide groups,
thioether groups, acid labile groups, photolabile groups, peptidase labile groups
and esterase labile groups. Preferred linking groups are disulfide groups and thioether
groups. For example, conjugates can be constructed using a disulfide exchange reaction
or by forming a thioether bond between the antibody and the cytotoxic agent.
[0075] Maytansinoids and maytansinoid analogs are among the preferred cytotoxic agents.
Examples of suitable maytansinoids include maytansinol and maytansinol analogs. Suitable
maytansinoids are disclosed in
U.S. Patent Nos. 4,424,219;
4,256,746;
4,294,757;
4,307,016;
4,313,946;
4,315,929;
4,331,598;
4,361,650;
4,362,663;
4,364,866;
4,450,254;
4,322,348;
4,371,533;
6,333,410;
5,475,092;
5,585,499; and
5,846,545.
[0078] An attractive candidate for the preparation of such cytotoxic conjugates is CC-1065,
which is a potent antitumor antibiotic isolated from the culture broth of
Streptomyces zelensis. CC-1065 is about 1000-fold more potent
in vitro than are commonly used anti-cancer drugs, such as doxorubicin, methotrexate and vincristine
(
B.K. Bhuyan et al., Cancer Res., 42, 3532-3537 (1982)).
[0079] Cytotoxic drugs such as methotrexate, daunorubicin, doxorubicin, vincristine, vinblastine,
melphalan, mitomycin C, chlorambucil, and calicheamicin are also suitable for the
preparation of conjugates of the present invention, and the drug molecules can also
be linked to the antibody molecules through an intermediary carrier molecule such
as serum albumin.
[0080] For diagnostic applications, the antibodies of the present invention typically will
be labeled with a detectable moiety. The detectable moiety can be any one which is
capable of producing, either directly or indirectly, a detectable signal. For example,
the detectable moiety may be a radioisotope, such as
3H,
14C,
32P,
35S, or
131I; a fluorescent or chemiluminescent compound, such as fluorescein isothiocyanate,
rhodamine, or luciferin; or an enzyme, such as alkaline phosphatase, beta-galactosidase
or horseradish peroxidase.
[0083] The antibodies of the invention also are useful for
in vivo imaging, wherein an antibody labeled with a detectable moiety such as a radio-opaque
agent or radioisotope is administered to a subject, preferably into the bloodstream,
and the presence and location of the labeled antibody in the host is assayed. This
imaging technique is useful in the staging and treatment of malignancies. The antibody
may be labeled with any moiety that is detectable in a host, whether by nuclear magnetic
resonance, radiology, or other detection means known in the art.
[0084] The antibodies of the invention also are useful as affinity purification agents.
In this process, the antibodies are immobilized on a suitable support, such a Sephadex
resin or filter paper, using methods well known in the art.
[0085] The antibodies of the invention also are useful as reagents in biological research,
based on their inhibition of the function of IGF-I receptor in cells.
[0086] For therapeutic applications, the antibodies or conjugates of the invention may be
administered to a subject, in a pharmaceutically acceptable dosage form. They can
be administered intravenously as a bolus or by continuous infusion over a period of
time, by intramuscular, subcutaneous, intra-articular, intrasynovial, intrathecal,
oral, topical, or inhalation routes. The antibody may also be administered by intratumoral,
peritumoral, intralesional, or perilesional routes, to exert local as well as systemic
therapeutic effects. Suitable pharmaceutically acceptable carriers, diluents, and
excipients are well known and can be determined by those of skill in the art as the
clinical situation warrants. Examples of suitable carriers, diluents and/or excipients
include: (1) Dulbecco's phosphate buffered saline, pH about 7.4, containing about
1 mg/ml to 25 mg/ml human serum albumin, (2) 0.9% saline (6.9% w/v NaCl), and (3)
5% (w/v) dextrose. The method of the present invention can be practiced
in vitro, in vivo, or
ex vivo.
[0087] In other therapeutic treatments, medicaments and/or compositions comprising the antibodies,
antibody fragments or conjugates of the invention may be co-administered with one
or more additional therapeutic agents. Suitable therapeutic agents include, but are
not limited to, cytotoxic or cytostatic agents. Taxol is a preferred therapeutic agent
that is also a cytotoxic agent.
[0088] Cancer therapeutic agents are those agents that seek to kill or limit the growth
of cancer cells while doing minimal damage to the host. Thus, such agents may exploit
any difference in cancer cell properties (e.g. metabolism, vascularization orcell-surface
antigen presentation) from healthy hostcells. Differences intumormorphology are potential
sites for intervention: for example, the second therapeutic can be an antibody such
as an anti-VEGF antibody that is useful in retarding the vascularization of the interior
of a solid tumor, thereby slowing its growth rate. Other therapeutic agents include,
but are not limited to, adjuncts such as granisetron HCL, androgen inhibitors such
as leuprolide acetate, antibiotics such as doxorubicin, antiestrogens such as tamoxifen,
antimetabolites such as interferon alpha-2a, cytotoxic agents such as taxol, enzyme
inhibitors such as ras farnesyl-transferase inhibitor, immunomodulators such as aldes-leukin,
and nitrogen mustard derivatives such as melphalan HCl, and the like.
[0089] When present in an aqueous dosage form, rather than being lyophilized, the antibody
typically will be formulated at a concentration of about 0.1 mg/ml to 100 mg/ml, although
wide variation outside of these ranges is permitted. For the treatment of disease,
the appropriate dosage of antibody or conjugate will depend on the type of disease
to be treated, as defined above, the severity and course of the disease, whetherthe
antibodies are administered for preventive or therapeutic purposes, the course of
previous therapy, the patient's clinical history and response to the antibody, and
the discretion of the attending physician. The antibody is suitably administered to
the patient at one time or over a series of treatments.
[0090] Depending on the type and severity of the disease, about 0.015 to 15 mg of antibody/kg
of patient weight is an initial candidate dosage for administration to the patient,
whether, for example, by one or more separate administrations, or by continuous infusion.
For repeated administrations over several days or longer, depending on the condition,
the treatment is repeated until a desired suppression of disease symptoms occurs.
However, other dosage regimens may be useful and are not excluded.
EXAMPLES
[0091] The invention is now described by reference to the following examples, which are
illustrative only, and are not intended to limit the present invention.
EXAMPLE 1: Murine EM164 Antibody
[0092] In this first example, the complete primary amino acid structure and cDNA sequence
of a murine antibody of the present invention is disclosed, together with its binding
properties and means for its expression in recombinant form. Accordingly, there is
provided a full and complete disclosure of an antibody of the invention and its preparation,
such that one of ordinary skill in the immunological arts would be able to prepare
said antibody without undue experimentation.
A. Generation of Anti-IGF-I Receptor Monoclonal Antibody Hybridoma
[0093] A cell line expressing human IGF-I receptor with a Y1251F mutation was used for immunization
as it expressed a high number of IGF-I receptors (∼10
7 per cell). The Y1251 F-mutation in the cytoplasmic domain of IGF-I receptor resulted
in loss of transformation and anti-apoptotic signaling, but did not affect IGF-I binding
and IGF-I-stimulated mitogenic signaling (
O'Connor, R. et al., 1997, Mol. Cell. Biol., 17, 427-435;
Miura, M. et al., 1995, J. Biol. Chem., 270, 22639-22644). The mutation did not otherwise affect antibody generation because the antibody
of this example bound to the extracellular domain of IGF-I receptor, which was identical
for both the Y1251 F mutant and the wild type receptor.
[0094] A cell line expressing human IGF-I receptor with a Y1251F mutation was generated
from 3T3-like cells of a IGF-I-receptor-deficient mouse by transfection with Y1251
F-mutant human IGF-I-receptor gene together with a puromycin-resistance gene, and
was selected using puromycin (2.5 microgram/mL) and by FACS sorting for high IGF-I
receptor expression (
Miura, M. et al., 1995, J. Biol. Chem., 270, 22639-22644). A cell line having a high level of IGF-I receptor expression was further selected
using a high concentration of puromycin such as 25 miaogram/mL, which was toxic to
most of the cells. Surviving colonies were picked and those displaying a high level
of IGF-I receptor expression were selected.
[0095] CAF1/J female mice, 6 months old, were immunized intraperitoneally on day 0 with
Y1251 F-mutant-human-IGF-I-receptor-overexpressing cells (5x10
5 cells, suspended in 0.2 mL PBS). The animals were boosted with 0.2 mL cell suspension
as follows: day 2,1 x10
6 cells; day 5, 2x10
6 cells; days 7, 9, 12, and 23, 1x10
7 cells. On day 26, a mouse was sacrificed and its spleen removed.
[0096] The spleen was ground between two frosted glass slides to obtain a single cell suspension,
which was washed with serum-free RPMI medium containing penicillin and streptomycin
(SFM). The spleen cell pellet was resuspended in 10 mL of 0.83% (w/v) ammonium chloride
solution in water for 10 min on ice to lyse the red blood cells, and was then washed
with serum-free medium (SFM). Spleen cells (1.2x10
8) were pooled with myeloma cells (4x10
7) from the non-secreting mouse myeloma cell line P3X63Ag8.653 (ATCC, Rockville, MD;
Cat. # CRL1580) in a tube, and washed with the serum-free RPMI-1640 medium (SFM).
The supernatant was removed and the cell pellet resuspended in the residual medium.
The tube was placed in a beaker of water at 37°C and 1.5 mL of polyethylene glycol
solution (50% PEG (w/v), average molecular weight 1500 in 75 mM HEPES, pH 8) was added
slowly at a drop rate of 0.5 mL/minute while the tube was gently shaken. After a wait
of one minute, 10 mL of SFM was added as follows: 1 mL over the first minute, 2 mL
over the second minute, and 7 mL over the third minute. Another 10 mL was then added
slowly over one minute. Cells were pelleted by centrifugation, washed in SFM and resuspended
in RPMI-1640 growth medium supplemented with 5% fetal bovine serum (FBS), hypoxanthine/aminopteri/
thymidine (HAT), penicillin, streptomycin, and 10% hybridoma cloning supplement (HCS).
Cells were seeded into 96-well flat-bottom tissue culture plates at 2x10
5 spleen cells in 200 µL per well. After 5-7 days, 100 µL per well were removed and
replaced with growth medium supplemented with hypoxanthine/thymidine (HT) and 5% FBS.
The general conditions used for immunization and hybridoma production were as described
by
J. Langone and H. Vunakis (Eds., Methods in Enzymology, Vol.121, "Immunochemical Techniques,
Part I"; 1986; Academic Press, Florida) and
E. Harlow and D. Lane ("Antibodies: A Laboratory Manual"; 1988; Cold Spring Harbor
Laboratory Press, New York). Other techniques of immunization and hybridoma production can also be used, as
are well known to those of skill in the art.
[0097] Culture supernatants from hybridoma clones were screened for binding to purified
human IGF-I receptor by ELISA, for specific binding to cells overexpressing human
IGF-I receptor, and for a lack of binding to cells overexpressing human insulin receptor
by ELISA and FACS screening as described below. Clones exhibiting higher binding affinity
to cells overexpressing human IGF-I receptor than to cells overexpressing human insulin
receptor were expanded and subcloned. The culture supernatants of the subclones were
further screened by the above binding assays. By this procedure, subclone 3F1-C8-D7
(EM 164) was selected, and the heavy and light chain genes were cloned and sequenced
as described below.
[0098] Human IGF-I receptor was isolated for use in the screening of supernatants from hybridoma
clones for their binding to IGF-I receptor by the method below. Biotinylated IGF-I
was prepared by modification of recombinant IGF-I using biotinylating reagents such
as sulfo-NHS-LC-biotin, sulfo-NHS-SS-biotin, or NHS-PEO
4-biotin Biotinylated IGF-I was absorbed on streptavidin-agarose beads and incubated
with lysate from cells that overexpressed human wild type or Y1251 F mutant IGFR.
The beads were washed and eluted with a buffer containing 2 to 4 M urea and detergent
such as triton X-100 or octyl-β-glucoside. Eluted IGF-I receptor was dialyzed against
PBS and was analyzed for purity by SDS-PAGE under reducing conditions, which showed
alpha and beta chain bands of IGF-I receptor of molecular weights about 135 kDa and
95 kDa, respectively.
[0099] To check for the binding of hybridoma supernatants to purified IGF-I receptor, an
Immulon-4HB ELISA plate (Dynatech) was coated with a purified human IGF-I receptor
sample (prepared by dialysis from urea/octyl-β-glucoside elution of affinity purified
sample) diluted in 50 mM CHES buffer at pH 9.5 (100 µL; 4°C, overnight). The wells
were blocked with 200 µL of blocking buffer (10 mg/mL BSA in TBS-T buffer containing
50 mM Tris, 150 mM NaCl, pH 7.5, and 0.1% tween-20) and incubated with supernatants
from hybridoma clones (100 µL; diluted in blocking buffer) for about 1 h to 12 h,
washed with TBS-T buffer, and incubated with goat-anti-mouse-IgG-Fc-antibody-horseradish
peroxidase (HRP) conjugate (100 µL; 0.8 µg/mL in blocking buffer; Jackson ImmunoResearch
Laboratories), followed by washes and detection using ABTS/H
2O
2 substrate at 405 nm (0.5 mg/mL ABTS, 0.03% H
2O
2 in 0.1 M citrate buffer, pH 4.2). Typically, a supernatant from a 3F1 hybridoma subclone
yielded a signal of about 1.2 absorbance units within 3 min of development, in contrast
to values of 0.0 obtained for supernatants from some other hybridoma clones. General
conditions for this ELISA were similar to the standard ELISA conditions for antibody
binding and detection as described by
E. Harlow and D. Lane ("Using Antibodies: A Laboratory Manual"; 1999, Cold Spring
Harbor Laboratory Press, New York), which conditions can also be used.
[0100] Screening of hybridoma supernatants for specific binding to human IGF-I receptor
and not to human insulin receptor was performed using ELISA on cell lines that overexpressed
human Y1251 F-IGF-I receptor and on cell lines that overexpressed human insulin receptor.
Both cell lines were generated from 3T3-like cells of IG F-I receptor deficient mice.
The IGF-I receptor overexpressing cells and insulin receptor overexpressing cells
were separately harvested from tissue culture flasks by quick trypsin/EDTA treatment,
suspended in growth medium containing 10% FBS, pelleted by centrifugation, and washed
with PBS. The washed cells (100 µL of about 1-3 x 10
6 cells/mL) were added to wells of an Immulon-2HB plate coated with phytohemagglutinin
(100 µL of 20 µg/mL PHA), centrifuged and allowed to adhere to PHA-coated wells for
10 min. The plate with cells was flicked to remove PBS and was then dried overnight
at
37°C. The wells were blocked with 5 mg/mL BSA solution in PBS for 1 h at 37°C and were
then washed gently with PBS. Aliquots of the supernatants from hybridoma clones (100
µL; diluted in blocking buffer) were then added to wells containing IGF-I-receptor-overexpressing
cells and to wells containing insulin receptor-overexpressing cells and were incubated
at ambient temperature for 1 h. The wells were washed with PBS, incubated with goat-anti-mouse-IgG-Fc-antibody-horseradish
peroxidase conjugate (100 µL; 0.8 µg/mL in blocking buffer) for 1 h, followed by washes
and then binding was detected using an ABTS/H
2O
2 substrate. A typical supernatant from a 3F1 hybridoma subclone upon incubation with
cells overexpressing IGF-I receptor yielded a signal of 0.88 absorbance units within
12 min of development, in contrast to a value of 0.22 absorbance units obtained upon
incubation with cells overexpressing human insulin receptor.
[0101] The hybridoma was grown in Integra CL350flasks (Integra Biosciences, Maryland), according
to manufacturer's specifications, to provide purified EM164 antibody. A yield of about
0.5-1 mg/mL antibody was obtained in the harvested supernatants from the Integra flasks,
based on quantitation by ELISA and by SDS-PAGE/Coomassie blue staining using antibody
standards. The antibody was purified by affinity chromatography on Protein A-agarose
bead column under standard purification conditions of loading and washing in 100 mM
Tris buffer, pH 8.9, containing 3 M NaCl, followed by elution in 100 mM acetic acid
solution containing 150 mM NaCl. The eluted fractions containing antibody were neutralized
with cold 2 M K
2HPO
4 solution and dialyzed in PBS at 4°C. The concentration of the antibody was determined
by measuring absorbance at 280 nm (extinction coefficient =1.4 mg
-1 mL cm
-1). The purified antibody sample was analyzed by SDS-PAGE under reducing conditions
and Coomassie blue staining, which indicated only heavy and light chain bands of antibody
at about 55 kDa and 25 kDa, respectively. The isotype of the purified antibody was
IgG, with kappa light chain.
B. Binding characterization of EM164 Antibody
[0102] The specific binding of the purified EM 164 antibody was demonstrated by fluorescence
activated cell sorting (FACS) using cells overexpressing human IGF-I receptor and
by using cells that overexpressed human insulin receptor (Figure 1). Incubation of
EM 164 antibody (50-100 nM) in 100 µL cold FACS buffer (1 mg/mL BSA in Dulbecco's
MEM medium) was performed using cells overexpressing IGF-I receptor and using cells
overexpressing insulin receptor (2x10
5 cells/mL) in a round-bottom 96-well plate for 1 h. The cells were pelleted by centrifugation
and washed with cold FACS buffer by gentle flicking, followed by incubation with goat-anti-mouse-IgG-antibody-FITC
conjugate (100 µL; 10 µg/mL in FACS buffer) on ice for 1 h. The cells were pelleted,
washed, and resuspended in 120 µL of 1 % formaldehyde solution in PBS. The plate was
analyzed using a FACSCalibur reader (BD Biosciences).
[0103] A strong fluorescence shift was obtained upon incubation of IGF-I receptor overexpressing
cells with EM 164 antibody, in contrastto an insignificant shift upon incubation of
insulin receptor overexpressing cells with EM 164 antibody (Figure 1), which demonstrated
that the EM 164 antibody was selective in its binding to IGF-I receptor and did not
bind to insulin receptor. The control antibodies, anti-IGF-I receptor antibody 1H7
(Santa Cruz Biotechnology) and anti-insulin receptor alpha antibody (BD Pharmingen
Laboratories), yielded fluorescence shifts upon incubations with cells that overexpressed
IGF-I receptor and insulin receptor, respectively (Figure 1). A strong fluorescence
shift was also observed by FACS assay using EM 164 antibody and human breast cancer
MCF-7cells, which expressed IGF-I receptor (
Dufoumy, B. et al., 1997, J. Biol. Chem., 272, 31163-31171), which showed that EM164 antibody bound to human IGF-I receptor on the surface of
human tumor cells.
[0104] The dissociation constant (
Kd) for the binding of EM164 antibody with human IGF-I receptor was determined by ELISA
titration of the binding of antibody at several concentrations with either directly
coated IG F-I receptor (affinity purified using biotinylated IGF-I, as above) or indirectly
captured biotinylated IGF-I receptor. Biotinylated IGF-I receptor was prepared by
biotinylation of detergent-solubilized lysate from IGF-I receptor overexpressing cells
using PEO-maleimide-biotin reagent (Pierce, Molecular Biosciences), which was affinity
purified using an anti-IGF-I receptor beta chain antibody immobilized on NHS-agarose
beads and was eluted with 2-4 M urea in buffer containing NP-40 detergent and dialyzed
in PBS.
[0105] The K
d determination for the binding of EM164 antibody with biotinylated IGF-1 receptor
was carried out by coating lmmulon-2HB plates with 100 µL of 1 µg/mL streptavidin
in carbonate buffer (150 mM sodium carbonate, 350 mM sodium bicarbonate) at 4°C overnight.
The streptavidin-coated wells were blocked with 200 µL of blocking buffer (10 mg/mL
BSA in TBS-T buffer), washed with TBS-T buffer and incubated with biotinylated IGF-I
receptor (10 to 100 ng) for 4 h at ambient temperature. The wells containing indirectly
captured biotinylated IGF-I receptor were then washed and incubated with EM164 antibody
in blocking buffer at several concentrations (5.1x10
-13 M to 200 nM) for 2 h at ambient temperature and were then incubated overnight at
4°C. The wells were next washed with TBS-T buffer and incubated with goat-anti-mouse-igG
H+L-antibody-horseradish peroxidase conjugate (100 µL; 0.5 µg/mL in blocking buffer),
followed by washes and detection using ABTS/H
2O
2 substrate at 405 nm. The value of K
d was estimated by non-linear regression for one-site binding.
[0107] The binding titration curve for the binding of EM164 antibody to biotinylated human
IGF-I receptor yielded a K
d value of 0.1 nM (Figure 2). The Fab fragment of EM164 antibody also bound the human
IGF-I receptor very tightly with a K
d value of 0.3 nM, which indicated that the monomeric binding of the EM164 antibody
to IGF-I receptor was also very strong.
[0108] This extremely low value of dissociation constant for the binding of IGF-I receptor
by EM164 antibody was in part due to a very slow k
off rate as verified by the strong binding signals observed after prolonged 1-2 day washes
of the antibody bound to immobilized IGF-I receptor.
[0109] EM164 antibody can be used for immunoprecipitation of IGF-I receptor, as demonstrated
by incubation of detergent-solubilized lysate of the human breast cancer MCF-7 cells
with EM164 antibody immobilized on protein G-agarose beads (Pierce Chemical Company).
A Western blot of the EM164 antibody immunoprecipitate was detected using a rabbit
polyclonal anti-IGF-I receptor beta chain (C-terminus) antibody (Santa Cruz Biotechnology)
and a goat-anti-rabbit-IgG-antibody-horseradish peroxidase conjugate, followed by
washes and enhanced chemiluminescence (ECL) detection. The Western blot of EM164 immunoprecipitate
from MCF-7 cells exhibited bands corresponding to the beta chain of IGF-I receptor
at about 95 kDa and the pro-IGF-I receptor at about 220 kDa. Similar immunoprecipitations
were carried out for other cell types to check species specificity of the binding
of EM164 antibody, which also bound to IGF-I receptor from cos-7 cells (African green
monkey), but did not bind to IGF-I receptor of 3T3 cells (mouse), CHO cells (chinese
hamster) or goat fibroblast cells (goat). The EM164 antibody did not detect SDS-denatured
human IGF-I receptor in Western blots of lysates from MCF-7 cells, which indicated
that it bound to a conformational epitope of native, non-denatured human IGF-I receptor.
[0110] The binding domain of EM164 antibody was further characterized using a truncated
alpha chain construct, which comprised the cysteine rich domain flanked by L1 and
L2 domains (residues 1-468) fused with the 16-mer-C-terminus piece (residues 704-719)
and which was terminated by a C-terminus epitope tag. This smaller IGF-I receptor,
which lacked residues 469-703, has been reported to bind IGF-I, although less tightly
compared to the native full-length IGF-I receptor (
Molina, L. et al., 2000, FEBS Letters, 467, 226-230;
Kristensen, C. et al., 1999, J. Biol. Chem., 274, 37251-37356). Thus, a truncated IGF-I receptor alpha chain construct was prepared comprising
residues 1-468 fused to the C-terminus piece that is residues 704-719 and flanked
by a C-terminus myc epitope tag. A stable cell line which expressed this construct,
and which also expresses the construct transiently in human embryonic kidney 293T
cells, was constructed. A strong binding of EM 164 antibody to this tru ncated IGF-I
receptor alpha chain construct was observed. Of the two antibodies tested, IR3 (Calbiochem)
also bound to this truncated alpha chain, but 1H7 antibody (Santa Cruz Biotechnology)
did not bind, which indicated that the epitope of EM164 antibody was clearly distinct
from that of 1H7 antibody.
C. Inhibition of binding of IGF-I to MCF-7 cells by EM164 antibody
[0111] The binding of IGF-I to human breast cancer MCF-7 cells was inhibited by EM164 antibody
(Figure 3). MCF-7 cells were incubated with or without 5 µg/mL EM164 antibody for
2 h in serum-free medium, followed by incubation with 50 ng/mL biotinylated IGF-I
for 20 min at 37°C. The cells were then washed twice with serum-free medium to remove
unbound biotin-IGF-I, and were then lysed in 50 mM HEPES, pH 7.4, containing 1% NP-40
and protease inhibitors. An Immulon-2HB ELISA plate was coated with a mouse monoclonal
anti-IGF-I receptor beta chain antibody and was used to capture the IGF-I receptor
and bound biotin-IGF-I from the lysate. The binding of the coated antibody to the
cytoplasmic C-terminal domain of the beta chain of IGF-I receptor did not interfere
with the binding of biotin-IGF-I to the extracellular domain of IGF-I receptor. The
wells were washed, incubated with streptavidin-horseradish peroxidase conjugate, washed
again, and then detected using ABTS/H
2O
2 substrate. The inhibition of IGF-I binding to MCF-7 cells by 5 µg/mL EM164 antibody
was essentially quantitative, and was almost equivalent to that of the ELISA background
obtained using a control lacking biotin-IGF-I.
[0112] In addition to the assay described above for the inhibition of binding of IGF-I to
MCF-7 cells by EM 164 antibody, the following assay demonstrated that EM164 antibody
was highly effective at displacing bound IGF-I from MCF-7 cells, as desired under
physiological conditions for an antagonistic anti-IGF-I receptor antibody to displace
the bound endogenous physiological ligand (such as IGF-I or IGF-II). In this IGF-I
displacement assay, MCF-7 cells grown in a 12-well plate were serum-starved and then
incubated with biotinylated IGF-I (20-50 ng/mL) in serum-free medium at 37°C (or at
4°C) for 1 to 2 h. The cells with bound biotinylated IG F-I were then treated with
EM164 antibody or a control antibody (10-100 µg/mL) at 37°C (or at 4°C) for 30 min
to 4 h. Cells were then washed with PBS and lysed in lysis buffer containing 1% NP-40
at 4°C. ELISA was carried out as described above to capture the IGF-I receptor from
the lysate and then detect the biotinylated IGF-I bound to the receptor using streptavidin-horseradish
peroxidase conjugate. This ELISA demonstrated that EM164 antibody was able to displace
pre-bound biotinylated IGF-I from cells nearly completely (90% within 30 min and -100%
within 4 h) at 37°C and by about 50% in 2 h at 4°C. In another experiment, NCI-H833
lung cancer cells were incubated with biotin-IGF-I, then washed and incubated with
EM164 antibody at 4°C for 2 h, which resulted in a 80% decrease in the bound biotin-IGF-I.
Therefore, EM164 antibody was highly effective at displacing pre-bound IGF-I from
cancer cells, which would be important therapeutically for the antagonism of the IGF-I
receptor by displacement of the bound endogenous physiological ligand.
[0113] The incubation of MCF-7 cells with EM164 antibody at 4°C for 2 h (or at 37°C for
30 min) did not result in a significant downregulation of the IGF-I receptor based
on Western blot analysis using anti-IGF-I receptor beta chain antibody (Santa Cruz
Biotechnology; sc-713), although a longer incubation with EM 164 antibody at 37°C
for 2 h resulted in a 25% downregulation of the IGF-I receptor. Therefore, the inhibition
of binding of IGF-I and the displacement of bound IGF-I by EM164 antibody at both
4°C and 37°C in these short-term experiments may not be explained by the down-regulation
of the receptor due to the binding of the EM164 antibody. The mechanism for the potent
inhibition of the binding of IGF-I to IGF-I receptor and for the displacement of the
pre-bound IGF-I by EM164 antibody is likely to be competition for binding, either
through sharing of the binding site or through steric occlusion or through allosteric
effects.
D. Inhibition of IGF-I receptor mediated cell signaling by EM164 antibody
[0114] Treatment of breast cancer MCF-7 cells and osteosarcoma SaOS-2 cells with EM164 antibody
almost completely inhibited intracellular IGF-I receptor signaling, as shown by the
inhibition of IGF-I receptor autophosphorylation and by the inhibition of phosphorylation
of its downstream effectors such as insulin receptor substrate-1 (IRS-1), Akt and
Erk1/2 (Figures 4-6).
[0115] In Figure 4, the MCF-7 cells were grown in a 12-well plate in regular medium for
3 days, and were then treated with 20 µg/mL EM164 antibody (or anti-B4 control antibody)
in serum-free medium for 3 h, followed by stimulation with 50 ng/mL IGF-I for 20 min
at 37°C. The cells were then lysed in ice-cold lysis buffer containing protease and
phosphatase inhibitors (50 mM HEPES buffer, pH 7.4, 1% NP-40, 1 mM sodium orthovanadate,
100 mM sodium fluoride, 10 mM sodium pyrophosphate, 2.5 mM EDTA, 10 µM leupeptin,
5 µM pepstatin, 1 mM PMSF, 5 mM benzamidine, and 5 µg/mL aprotinin). An ELISA plate
was pre-coated with anti-IGF-I receptor beta chain C-terminus monoclonal antibody
TC123 and was incubated with the lysate samples for 5 h at ambient temperature to
capture IG F-I receptor. The wells containing the captured IGF-I receptor were then
washed and incubated with biotinylated anti-phosphotyrosine antibody (PY20; 0.25 µg/mL;
BD Transduction Laboratories) for 30 min, followed by washes and incubation with streptavidin-horseradish
peroxidase conjugate (0.8 µg/mL) for 30 min. The wells were washed and detected with
ABTS/H
2O
2 substrate. Use of a control anti-B4 antibody showed no inhibition of the IGF-I stimulated
autophosphorylation of IGF-I receptor. In contrast, a complete inhibition of the IGF-I
stimulated autophosphorylation of IGF-I receptor was obtained upon treatment with
EM164 antibody (Figure 4).
[0116] To demonstrate inhibition of phosphorylation of insutinreceptorsubstrate-1 (IRS-1),
an ELISA using immobilized anti-IRS-1 antibody to capture IRS-1 from lysates was used,
followed by measurement of the associated p85 subunit of phosphatidylinositol-3-kinase
(PI-3-kinase) that binds to the phosphorylated IRS-1 (
Jackson, J. G. et al.,1998, J. Biol. Chem., 273, 9994-10003). In Figure 5, MCF-7 cells were treated with 5 µg/mL antibody (EM164 or IR3) in serum-free
medium for 2 h, followed by stimulation with 50 ng/mL IGF-I for 10 min at 37°C. Anti-IRS-1
antibody (rabbit polyclonal; Upstate Biotechnology) was indirectly captured by incubation
with coated goat-anti-rabbit-IgG antibody on an ELISA plate, which was then used to
capture IRS-1 from the cell lysate samples by overnight incubation at 4°C. The wells
were then incubated with mouse monoclonal anti-p85-PI-3-kinase antibody (Upstate Biotechnology)
for 4 h, followed by treatment with goat-anti-mouse-IgG-antibody-HRP conjugate for
30 min. The wells were then washed and detected using ABTS/ H
2O
2 substrate (Figure 5). As shown in Figure 5, EM164 antibody was more effective at
inhibiting the IGF-I-stimulated IRS-1 phosphorylation than was IR3 antibody, and EM164
antibody did not show any agonistic activity on IRS-1 phosphorylation when incubated
with cells in the absence of IGF-1.
[0117] The activation of other downstream effectors, such as Akt and Erk1/2, was also inhibited
in a dose-dependent manner by EM164 antibody in SaOS-2 cells (Figure 6) and in MCF-7
cells, as was shown using Western blots of lysates and phosphorylation-specific antibodies
(rabbit polyclonal anti-phospho-Ser
473 Akt polyclonal and anti-phospho-ERK1/2 antibodies; Cell Signaling Technology). A
pan-ERK antibody demonstrated equal protein loads in all lanes (Figure 6). Treatment
of SaOS-2 cells with EM164 antibody did not inhibit the EGF-stimulated phosphorylation
of ErkI/2, thus demonstrating the specificity of inhibition of IGF-I receptor signaling
pathway by EM164 antibody.
E. Inhibition of IGF-I-, IGF-II- and serum-stimulated growth and survival of human
tumor cells by EM164 antibody
[0118] Several human tumor cell lines were tested in serum-free conditions for their growth
and survival response to IGF-I. These cell lines were treated with EM164 antibody
in the presence of IGF-I, IGF-II, or serum, and their growth and survival responses
were measured using an MTT assay after 2-4 days. Approximately 1500 cells were plated
in a 96-well plate in regular medium with serum, which was replaced with serum-free
medium the following day (either serum-free RPMI medium supplemented with transferrin
and BSA, or phenol-red free medium as specified by
Dufoumy, B. et al., 1997, J. Biol. Chem., 272, 31163-31171). After one day of growth in serum-free medium, the cells were incubated with about
75 µL of 10 µg/mL antibody for 30 min.-3 h, followed by the addition of 25 µL of IGF-I
(or IGF-II or serum) solution to obtain a final concentration of 10 ng/mL IGF-I, or
20 ng/mL IGF-II, or 0.04-10% serum. In some experiments, the cells were stimulated
first with IGF-I for 15 min before the addition of EM164 antibody, or both IGF-I and
EM164 antibody were added together. The cells were then allowed to grow for another
2-3 days. A solution of MTT (3-(4,5)-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium
bromide; 25 µL of a 5 mg/mL solution in PBS) was then added and the cells were returned
to the incubator for 2-3 h. The medium was then removed and replaced by 100 µL DMSO,
mixed, and the absorbance of the plate was measured at 545 nm. Several human tumor
cell lines showed a growth and survival response upon addition of IGF-I or IGF-II
or serum that was significantly inhibited by EM164 antibody, irrespective of whether
the antibody was added before IGF-I, or if IGF-I was added before the antibody, or
if both IGF-I and antibody were added together (Table 1).
TABLE 1- Inhibition of IGF-I-stimulated growth and survival of tumor cells by EM164
antibody
| Tumor Cell Type |
Fold growth response to IGF-I (MTT assay: ratio for IGF-I treated vs untreated cells
in serum-free medium)a |
% Inhibition by EM164 antibody of IGF-I-stimulated growth in serum-free medium |
Inhibition by EM164 antibody of Growth/survival of cells in 1.25-10% serumb |
| MCF-7 (breast) |
1.7-2.8 |
100 % |
85% |
| |
|
|
|
| HT-3 (cervical) |
2 |
70-90 % |
ND |
| |
|
|
|
| Colo 205 (colon) |
2.3 |
50 % |
Yes |
| HT-29 |
1.5 |
60 % |
Yes |
| |
|
|
|
| NCI-H838 (lung) |
3 |
100 % |
85-90 % |
| Calu-6 |
1.6-1.8 |
85% |
Yes |
| SK-LU-1 |
1.4 |
100% |
No |
| NCI-H596 |
1.4 |
100 % |
Weakly |
| A 549 |
1.2 |
80 % |
ND |
| |
|
|
|
| A 375 (melanoma) |
1.6 |
90 % |
No |
| SK-Mel-37 |
1.4 |
85 % |
ND |
| |
|
|
|
| RD (rhabdomyocarcoma) |
1.7 |
85-100 % |
Yes |
| |
|
|
|
| SaOS-2 (osteosarcoma) |
2.5 |
100 % |
Yes |
| |
|
|
|
| A 431 (epidermoid) |
2.2 |
85 % |
Yes |
| SK-N-SH (neuroblastoma) |
2 |
85 % |
30-50 % |
| |
|
|
|
| a MTT assay of 3- to 4-day growth/survival of cells in response to 10 ng/mL IGF-I in
serum-free medium containing 5-10 µg/mL EM164 antibody. |
| b Inhibition of growth of cells in 1.25-10 % serum in the presence of 5-10 µg/mL EM164
antibody by MTT assay or colony formation assay based on comparison with the control
(with serum but without antibody); the extent of inhibition was quantitatively measured
for MCF-7, NCI-H838 and SK-N-SH cells based on controls (without serum but with antibody,
and with serum but without antibody) to accountforautocrine/paracrine IGF-stimulation
by cells. ND indicates no data or poor data due to staining difficulties. |
[0119] The EM164 antibody strongly inhibited IGF-I-or serum-stimulated growth and survival
of breast cancer MCF-7 cells (Figures 7 and 8). In a separate experiment, the EM164
antibody strongly inhibited IGF-II-stimulated growth and survival of MCF-7 cells.
Previous reports using commercially available antibodies such as IR3 antibody showed
only weak inhibition of serum-stimulated growth and survival of MCF-7 cells, as confirmed
in Figure 7 for the IR3 and 1H7 antibodies (
Cullen, K. J. et al., 1990, Cancer Res., 50,48-53). In contrast, EM164 antibody was a potent inhibitor of the serum- or IGF-stimulated
growth of MCF-7 cells. As shown in Figure 8, EM164 antibody was equally effective
in inhibiting the growth and survival of MCF-7 cells over a wide range of serum concentrations
(0.04-10% serum).
[0120] The growth inhibition of MCF-7 cells by EM164 antibody was measured by counting cells.
Thus, in a 12-well plate, about 7500 cells were plated in RPMI medium with 10% FBS,
in the presence or absence of 10 µg/mL EM164 antibody. After 5 days of growth, the
cell count for the untreated control sample was 20.5 x 10
4 cells, in contrast to a cell count of only 1.7 x 10
4 cells for the EM164 antibody-treated sample. Treatment with the EM164 antibody inhibited
the growth of MCF-7 cells by about 12-fold in 5 days. This inhibition by EM164 antibody
was significantly greater than was a reported 2.5-fold inhibition using IR3 antibody
in a 6-day assay for MCF-7 cells (
Rohlik, Q. T. et al., 1987, Biochem. Biophys. Res. Commun., 149, 276-281).
[0121] The IGF-I- and serum-stimulated growth and survival of a non-small cell lung cancer
line NCI-H838 were also strongly inhibited by EM 164 antibody, compared to a control
anti-B4 antibody (Figure 9). Treatment with EM 164 antibody in serum-free medium produced
a smaller signal than the untreated sample for both NCI-H838 and MCF-7 cells, presumably
because EM 164 antibody also inhibited the autocrine and paracrine IGF-I and IGF-II
stimulation of these cells (Figures 7 and 9). The colony size of HT29 colon cancer
cells was also greatly reduced upon treatment with EM164 antibody.
[0122] EM 164 antibody is therefore unique among all known anti-IGF-I receptor antibodies
in its effectiveness to inhibit the serum-stimulated growth of tumor cells such as
MCF-7 cells and NCI-H833 cells by greater than 80%.
[0123] The EM164 antibody caused growth arrest of cells in G0/G1 phase of cell cycle and
abrogated the mitogenic effect of IGF-I. For cell cycle analysis, MCF-7 cells were
treated with IGF-I (20 ng/mL) in the presence or absence of EM164 (20 µg/mL) for 1
day and then analyzed by propidium iodide staining and flow cytometry. As shown in
Figure 25, the cycling of cells in response to IGF-I stimulation in the absence of
EM164 (with 41% of the cells in the S phase and 50% in the G0/G1 phase) was suppressed
in EM164-treated cells (with only 9% in the S phase and 77% of the cells in the G0/G1
phase).
[0124] In addition to its inhibition of cell proliferation, EM164 antibody treatment resulted
in apoptosis of cells. For measurement of apoptosis, cleavage of the cytokeratin CK18
protein by caspase was measured in NCI-H838 lung cancer cells incubated with IGF-1
or serum in the presence or absence of EM164 for 1 day (Figure 26). In the absence
of EM164, the addition of IGF-I or serum resulted in a lower caspase-cleaved CK18
signal compared to the no IGF-I control, indicating that IGF-I and serum prevent the
activation of caspase. Treatment with EM164 suppressed the anti-apoptotic effects
of IGF-I and serum, as indicated by the greater cleaved CK18 levels obtained in the
presence of EM164 than in the absence of EM164 (Figure 26).
F. Synergistic inhibition by EM164 antibody of growth and survival of human tumor
cells in combinations with other cytotoxic and cytostatic agents
[0125] The combined administration of EM164 antibody with taxol was significantly more inhibitory
to the growth and survival of non-small cell lung cancer Calu6 cells than was taxol
alone. Similarly, the combination of EM164 antibody with camptothecin was significantly
more inhibitory than camptothecin alone toward the growth and survival of colon cancer
HT29 cells. Because EM164 antibody alone was not expected to be as toxic to cells
as organic chemotoxic drugs, the synergism between the predominantly cytostatic effect
of EM164 antibody and the cytotoxic effect of the chemotoxic drug may be highly efficacious
in combination cancer therapies in clinical settings.
[0126] The combined effect of EM164 antibody with an anti-EGF receptor antibody (KS77) was
significantly more inhibitory than either EM164 antibody or KS77 antibody alone on
the growth and survival of several tumor cell lines such as HT-3 cells, RD cells,
MCF-7cells, and A431 cells. Therefore, the synergistic effect of combining neutralizing
antibodies for two growth factor receptors such as IG F-I receptor and EGF receptor
may also be useful in clinical cancer treatment.
[0127] Conjugates of EM164 antibody with cytotoxic drugs are also valuable in targeted delivery
of the cytotoxic drugs to the tumors overexpressing IGF-I receptor. Conjugates of
EM164 antibody with radiolabels or other labels can be used in the treatment and imaging
of tumors that overexpress IGF-I receptor.
G. Effect of EM164 treatment, as a single agent or in combination with anti-cancer
agents, in human cancer xenografts in immunodeficient mice
[0128] Human non-small cell lung cancer Calu-6 xenografts were established in immunodeficient
mice by subcutaneous injections of 1x10
7 Calu-6 cells. As shown in Figure 10, these mice containing established 100 mm
3 Calu-6 xenografts were treated with EM 164 antibody alone (6 injections of 0.8 mg/mouse,
i. v., two per week) or with taxol alone (five injections of taxol, i.p. every two
days; 15 mg/kg), or with a combination of taxol and EM 164 antibody treatments, or
PBS alone (200 µL/mouse, 6 injections, two per week, i.v.) using five mice per treatment
group. The growth of tumors was significantly slowed by EM164 antibody treatment compared
to a PBS control. No toxicity of EM164 antibody was observed, based on measurements
of the weights of the mice. Although taxol treatment alone was effective until day
14, the tumor then started to grow back. However, the growth of the tumor was delayed
significantly in the group that was treated by a combination of taxol and EM164 antibody,
compared to the group that was treated with taxol alone.
[0129] Human pancreatic cancer xenografts were established in 5 week-old, female SCID/ICR
mice (Taconic) by subcutaneous injections of 10
7 BxPC-3 cells in PBS (day 0). The mice bearing established tumors of 80 mm
3 were then treated with EM164 alone (13 injections of 0.8 mg/mouse, i.v., lateral
tail vein, on days 12, 16, 19, 23, 26, 29, 36, 43, 50, 54, 58, 61 and 64), with gemcitabine
alone (two injections of 150 mg/kg/mouse, i.p., on days 12 and 19), with a combination
of gemcitabine and EM164 following the above schedules, PBS alone, and a control antibody
alone (following the same schedule as EM164) using five mice in each of the five treatment
groups. As shown in Figure 27, treatment with EM164 alone, or in combination with
gemcitabine, resulted initially in total regression of tumor xenografts in 4 of 5
animals in the EM164 treatment group and in all 5 animals in the combination treatment
group. Measurable tumor regrowth was only seen in more than one animal on day 43 in
the EM164 group and on day 68 in the combination treatment group, resulting in significantly
smaller meantumorvolumes on day 74 in comparison with the control treatments (P =
0.029 and 0.002, respectively; two-tailed T-test; Figure 27). In another study, EM164
antibody treatment (alone or in combination with an anti-EGF receptor antibody; intraperitoneal
injections) inhibited the growth of established BxPC-3 xenografts in mice.
H. Cloning and sequencing of the light and heavy chains of EM164 antibody
[0130] Total RNA was purified from EM164 hybridoma cells. Reverse transcriptase reactions
were performed using 4-5 µg total RNA and either oligo dT or random hexamer primers.
[0131] PCR reactions were performed using a RACE method described in
Co et al. (J. Immunol., 148, 1149-1154 (1992)) and using degenerate primers as described in
Wang et al., (J. Immunol. Methods, 233, 167-177 (2000)). The RACE PCR method required an intermediate step to add a poly G tail on the
3'ends of the first strand cDNAs. RT reactions were purified with Qianeasy (Qiagen)
columns and eluted in 50 µl 1 X NEB buffer 4. A dG tailing reaction was performed
on the eluate with 0.25 mM CoCl
2, 1 mM dGTP, and 5 units terminal transferase (NEB), in 1 X NEB buffer 4. The mixture
was incubated at 37 °C for 30 minutes and then 1/5 of the reaction (10 µl) was added
directly to a PCR reaction to serve as the template DNA.
[0132] The RACE and degenerate PCR reactions were identical except for differences in primers
and template. The terminal transferase reaction was used directly for the RACE PCR
template, while the RT reaction mix was used directly for degenerate PCR reactions.
[0133] In both RACE and degenerate PCR reactions the same 3' light chain primer. HindKL
- tatagagctcaagcttggatggtgggaagatggatacagttggtgc (SEQ ID NO: 14) and 3' heavy chain
primer.
Bg12IgG1 - ggaagatctatagacagatgggggtgtcgttttggc (SEQ ID NO: 15)
were used.
[0134] In the RACE PCR, one poly C 5' primer was used for both the heavy and light chain:
EcoPolyC - TATATCTAGAATTCCCCCCCCCCCCCCCCC (SEQ ID NO: 16), while the degenerate 5'
end PCR primers were:
Sac1MK - GGGAGCTCGAYATTGTGMTSACMCARWCTMCA (SEQ ID NO: 17) for the light chain, and
an equal mix of:
EcoR1MH1 - CTTCCGGAATTCSARGTNMAGCTGSAGSAGTC (SEQ ID NO: 18) and
EcoR1MH2 - CTTCCGGAATTCSARGTNMAGCTGSAGSAGTCWGG (SEQ ID NO: 19)
for the heavy chain.
[0135] In the above primer sequences, mixed bases are defined as follows: H=A+T+C, S=g+C,
Y=C+T, K = G+T, M=A+C, R=A+g, W=A+T, V = A+C+G.
[0136] The PCR reactions were performed using the following program: 1) 94 °C 3 min, 2)
94 °C 15 sec, 3) 45 °C 1 min, 4) 72 °C 2 min, 5) cycle back to step #2 29 times, 6)
finish with a final extension step at 72 °C for 10 min.
[0137] The PCR products were cloned into pBluescript II SK+ (Stratagene) using restriction
enzymes created by the PCR primers.
[0138] Several individual light and heavy chain clones were sequenced by conventional means
to identify and avoid possible polymerase generated sequence errors (Figures 12 and
13). Using Chothia canonical classification definitions, the three light chain and
heavy chain CDRs were identified (Figures 12-14).
[0139] A search of the NCBI IgBlast database indicated that the anti-IGF-I receptor antibody
light chain variable region probably derived from the mouse IgVk Cr1 germline gene
while the heavy chain variable region probably derived from the IgVh J558.c germline
gene (Figure 15).
[0140] Protein sequencing of murine EM164 antibody was performed to confirm the sequences
shown in Figures 12 and 13. The heavy and light chain protein bands of purified EM164
antibody were transferred to a PVDF membrane from a gel (SDS-PAGE, reducing conditions),
excised from the PVDF membrane and analyzed by protein sequencing. The N-terminal
sequence of the light chain was determined by Edman sequencing to be: DVLMTQTPLS (SEQ
ID NO: 20), which matches the N-terminal sequence of the cloned light chain gene obtained
from the EM164 hybridoma.
[0141] The N-terminus of the heavy chain was found to be blocked for Edman protein sequencing.
A tryptic digest peptide fragment of the heavy chain of mass 1129.5 (M+H
+, monoisotopic) was fragmented via post-source decay (PSD) and its sequence was determined
to be GRPDYYGSSK (SEQ ID NO:21). Another tryptic digest peptide fragment of the heavy
chain of mass 2664.2 (M+H
+, monoisotopic) was also fragmented via post-source decay (PSD) and its sequence was
identified as: SSSTAYMQLSSLTSEDSAVYYFAR (SEQ ID NO:21). Both of these sequences match
perfectly those of CDR3 and framework 3 (FR3) of the cloned heavy chain gene obtained
from the EM164 hybridoma.
I. Recombinant expression of EM164 antibody
[0142] The light and heavy chain paired sequences were cloned into a single mammalian expression
vector (Figure 16). The PCR primers for the human variable sequences created restriction
sites that allowed the human signal sequence to be attached while in the pBluescriptII
cloning vector, and the variable sequences were cloned into the mammalian expression
plasmid using EcoRI and BsiWI or HindIII and Apal sites for the light chain or heavy
chain, respectively (Figure 16). The light chain variable sequences were cloned inframe
onto the human IgK constant region and the heavy chain variable sequences were cloned
into the human Iggammal constant region sequence. In the final expression plasmids,
human CMV promoters drove the expression of both the light and heavy chain cDNA sequences.
Expression and purification of the recombinant mouse EM 164 antibody proceeded according
to methods that arewell-known in the art.
EXAMPLE 2: Humanized versions of EM164 antibody
[0143] Resurfacing of the EM164 antibody to provide humanized versions suitable as therapeutic
or diagnostic agents generally proceeds according to the principles and methods disclosed
in
U.S. Patent 5,639,641, and as follows.
A. Surface prediction
[0144] The solvent accessibility of the variable region residues for a set of antibodies
with solved structures was used to predict the surface residues for the murine anti-IGF-I
receptor antibody (EM164) variable region. The amino acid solvent accessibility for
a set of 127 unique antibody structure files (Table 2) were calculated with the MC
software package (
Pedersen et al., 1994, J. Mol. Biol., 235, 959-973). The ten most similar light chain and heavy chain amino acid sequences from this
set of 127 structures were determined by sequence alignment. The average solvent accessibility
for each variable region residue was calculated, and positions with greater than a
30% average accessibility were considered to be surface residues. Positions with average
accessibilities of between 25% and 35% were further examined by calculating the individual
residue accessibility for only those structures with two identical flanking residues.
TABLE 2 - 127 antibody structures from the Brookhaven database used to predict the
surface of anti-IGF-I-receptor antibody (EM164)
| 127 Brookhaven structure files used for surface predictions |
| 2rcs |
3hfl |
3hfm |
1aif |
1a3r |
1bbj |
43c9 |
4fab |
6fab |
7fab |
| 2gfb |
2h1p |
2hfl |
1a6t |
1axt |
1bog |
2hrp |
2jel |
2mcp |
2pcp |
| 1yuh |
2bfv |
2cgr |
8fab |
1ae6 |
1bvl |
2dbl |
2f19 |
2fb4 |
2fbj |
| 1sm3 |
1tet |
1vfa |
glb2 |
1a4j |
1cly |
1vge |
1yec |
1yed |
1yee |
| 1nsn |
1opg |
1osp |
1aj7 |
1ayl |
1clz |
1ptg |
1psk |
1rmf |
1sbs |
| 1ncd |
1nfd |
1ngp |
1acy |
1afv |
1cbv |
1nld |
1nma |
1nmb |
1nqb |
| 1mcp |
1mfb |
1mim |
15c8 |
1a5f |
1axs |
1mlb |
1mpa |
1nbv |
1ncb |
| 1jrh |
1kb5 |
1kel |
1ap2 |
1b2w |
1adq |
1kip |
1kir |
1lve |
1mam |
| 1igi |
1igm |
1igt |
1ad0 |
1baf |
1cfv |
1igy |
1ikf |
1jel |
1jhl |
| 1gpo |
1hil |
1hyx |
1a0q |
1bjm |
1clo |
1iai |
1ibg |
1igc |
1igf |
| 1fpt |
1frg |
1fvc |
1aqk |
1bln |
1d5b |
1gaf |
1ggi |
1ghf |
1gig |
| 1fai |
1fbi |
1fdl |
1ad9 |
1bbd |
1f58 |
1fgv |
1fig |
1flr |
1for |
| |
1dbl |
1dfb |
1a3l |
1bfo |
1eap |
1dsf |
1dvf |
|
|
B. Molecular modeling:
[0145] A molecular model of murine EM164 was generated using the Oxford Molecular software
package AbM. The antibody framework was built from structure files for the antibodies
with the most similar amino acid sequences, which were 2jel for the light chain and
1 nqb for the heavy chain. The non-canonical CDRs were built by searching a C-α structure
database containing non-redundant solved structures. Residues that lie within 5 of
a CDR were determined.
C. Human Ab selection
[0146] The surface positions of murine EM164 were compared to the corresponding positions
in human antibody sequences in the Kabat database (
Johnson, G. and Wu, T. T. (2001) Nucleic Acids Research, 29: 205-206). The antibody database management software SR (Searle 1998) was used to extract
and align the antibody surface residues from natural heavy and light chain human antibody
pairs. The human antibody surface with the most identical surface residues, with special
consideration given to positions that come within 5 of a CDR, was chosen to replace
the murine anti-IGF.
I receptor antibody surface residues.
D. PCR mutagenesis
[0147] PCR mutagenesis was performed on the murine EM164 cDNA clone (above) to build the
resurfaced, human EM 164 (herein huEM164). Primer sets were designed to make the 8
amino acid changes required for all tested versions of huEM164, and additional primers
were designed to alternatively make the two 5 residue changes (Table 3). PCR reactions
were performed with the following program: 1) 94
°C 1 min, 2) 94
°C 15 sec, 3) 55
°C 1 min, 4) 72
°C 1 min, 5) cycle back to step #2 29 times, 6) finish with a final extension step at
72 °C for 4 min. The PCR products were digested with their corresponding restriction
enzymes and were cloned into the pBluescript cloning vectors as described above. Clones
were sequenced to confirm the desired amino acid changes.
TABLE 3 - PCR primers used to build 4 humanized EM164 antibodies
| Primer |
Sequence |
SEQ ID NO: |
| Em164hcw |
 |
23 |
| Em164hcqqgol1 |
CAATCAGAAGTTCCAGGGGAAGGCCACAC |
24 |
| Em164hcqqgol2 |
CCTTCCCCTGGAACTTCTGATTGTAGTTAGTACG |
25 |
| Em1641cv3 |
CAGGTGTACACTCCGATGTTGTGATGACCCAAACTCC |
26 |
| Em1641c03 |
CAGGTGTACACTCCGATGTTTTGATGACCCAAACTCC |
27 |
| Em1641cp18 |
GACTAGATCTGCAAGAGATGGAGGCTGGATCTCCAAGAC |
28 |
| Em1641cbg12 |
TTGCAGATCTAGTCAGAGCATAGTACATAGTAATG |
29 |
| Em 164r45 |
 |
30 |
| Em164a67ol1 |
GTGGCAGTGGAGCAGGGACAGATTTCAC |
31 |
| Em164a67ol2 |
GAAATCTGTCCCTGCTCCACTGCGACTG |
32 |
E. Variable region surface residues
[0149] The 10 most homologous antibodies in the set of 127 antibody structure files were
identified (Figures 17 and 18). The solvent accessibility for each Kabat position
was averaged for these aligned sequences and the distribution of the relative accessibilities
for each residue were as shown in Figure 19. Both the light and heavy chain have 26
residues with average relative accessibilities of at least 30% (Figure 19): these
residues were therefore the predicted surface residues for EM164. Several residues
had average accessibilities of between 25% and 35%, and these were further examined
by averaging only the antibodies with two identical residues flanking either side
of the residue (Tables 4 and 5). After this additional analysis, the original set
of surface residues that was identified above remained unchanged.
TABLE 4 - Surface residues and average accessibility (ave. acc.) for the light and
heavy chain variable sequences of EM164 antibody
| EM164 Surface Residues |
| Light Chain |
|
Heavy Chain |
| EM164 |
Kabat # |
Ave. Acc. |
|
EM164 |
Kabat # |
Ave. Acc. |
| D |
1 |
45.89 |
|
Q |
1 |
58.19 |
| L |
3 |
41.53 |
|
Q |
3 |
34.08 |
| T |
7 |
31.40 |
|
Q |
5 |
34.36 |
| L |
9 |
50.08 |
|
A |
9 |
38.01 |
| L |
15 |
35.45 |
|
L |
11 |
47.72 |
| Q |
18 |
39.79 |
|
K |
13 |
46.51 |
| R |
24 |
34.36 |
|
P |
14 |
31.49 |
| S |
26 |
32.63 |
|
G |
15 |
31.42 |
| Q |
27 |
34.35 |
|
K |
19 |
34.41 |
| N |
28 |
36.38 |
|
K |
23 |
31.23 |
| P |
40 |
43.05 |
|
T |
28 |
36.24 |
| G |
41 |
46.56 |
|
P |
41 |
44.01 |
| Q |
42 |
34.92 |
|
G |
42 |
42.62 |
| K |
45 |
30.58 |
|
Q |
43 |
46.85 |
| S |
52 |
30.40 |
|
E |
61 |
46.68 |
| S |
56 |
41.46 |
|
K |
62 |
44.87 |
| G |
57 |
42.41 |
|
K |
64 |
38.92 |
| D |
60 |
45.96 |
|
R |
65 |
40.06 |
| S |
67 |
38.20 |
|
K |
73 |
35.92 |
| R |
77 |
42.61 |
|
S |
74 |
48.91 |
| E |
81 |
38.46 |
|
S |
82B |
32.72 |
| V |
95E |
34.83 |
|
S |
84 |
35.21 |
| K |
103 |
31.10 |
|
E |
85 |
39.62 |
| K |
107 |
36.94 |
|
D |
98 |
36.00 |
| R |
108 |
60.13 |
|
A |
106 |
37.65 |
| A |
109 |
53.65 |
|
S |
113 |
43.42 |
TABLE
| Borderline Surface Residues |
| Light Chain |
|
Heavy Chain |
| EM164 |
Kabat # |
Ave. Acc. |
|
EM164 |
Kabat # |
Ave. Acc. |
| T |
5 |
28.68 |
|
Q |
3 |
31.62 |
| T |
7 |
30.24 |
|
Q |
5 |
36.07 |
| P |
12 |
26.59 |
|
P |
14 |
29.88 |
| G |
16 |
25.20 |
|
G |
15 |
30.87 |
| D |
17 |
25.73 |
|
S |
17 |
25.64 |
| S |
20 |
25.37 |
|
K |
19 |
35.06 |
| R |
24 |
36.73 |
|
K |
23 |
31.48 |
| S |
26 |
31.00 |
|
G |
26 |
30.53 |
| Q |
27 |
32.29 |
|
S |
31 |
27.12 |
| S |
27A |
29.78 |
|
R |
56 |
NA |
| V |
27C |
29.05 |
|
T |
68 |
27.71 |
| V |
29 |
NA |
|
T |
70 |
24.65 |
| Q |
42 |
34.92 |
|
S |
75 |
18.80 |
| K |
45 |
32.24 |
|
S |
82B |
32.87 |
| S |
52 |
30.02 |
|
P |
97 |
NA |
| R |
54 |
29.50 |
|
Y |
99 |
NA |
| D |
70 |
26.03 |
|
V |
103 |
NA |
| R |
74 |
NA |
|
T |
111 |
25.95 |
| E |
79 |
26.64 |
|
|
|
|
| A |
80 |
29.61 |
|
|
|
|
| V |
95E |
42.12 |
|
|
|
|
| G |
100 |
29.82 |
|
|
|
|
| K |
103 |
31.10 |
|
|
|
|
| E |
105 |
25.78 |
|
|
|
|
| Residues which had average accessibilities between 25% and 35% were further analyzed
by averaging a subset of antibodies that had two identical residues flanking either
side of the residue in question. These borderline surface positions and their new
average accessibilities are given. The NA's refer to residues with no identical flanking
residues in the 10 most similar antibodies. |
F. Molecular modeling to determine which residues fall within 5 of a CDR
[0150] The molecular model above, generated with the AbM software package, was analyzed
to determine which EM 164 surface residues were within 5 of a CDR. In orderto resurface
the murine EM164 antibody, all surface residues outside of a CDR should be changed
to the human counterpart, but residues within 5 of a CDR are treated with special
care because they may also contribute to antigen specificity. Therefore, these latter
residues must be identified and carefully considered throughout the humanization process.
The CDR definitions used for resurfacing combine the AbM definition for heavy chain
CDR2 and Kabat definitions for the remaining 5 CDRs (Figure 14). Table 6 shows the
residues that were within 5 of an y CDR residue in either the light or heavy chain
sequence of the EM164 model.
TABLE 6 - EM164 antibody framework surface residues within 5 of a CDR
| EM164 Surface Residues within 5Å of a CDR |
| Light chain |
Heavy chain |
| D1 |
T28 |
| L3 |
K73 |
| T7 |
S74 |
| P40 |
|
| Q42 |
|
| K45 |
|
| G57 |
|
| D60 |
|
| E81 |
|
G. Identification of the most homologous human surfaces
[0151] Candidate human antibody surfaces for resurfacing EM164 were identified within the
Kabat antibody sequence database using SR software, which provided for the searching
of only specified residue positions against the antibody database. To preserve the
natural pairings, surface residues of both the light and heavy chains were compared
together. The most homologous human surfaces from the Kabat database were aligned
in rank order of sequence identity. The top 5 surfaces are given in Table 7. These
surfaces were then compared to identify which of them would require the least changes
within 5 of a CDR. The Leukemic B-cell antibody, CLL 1.69, required the least number
of surface residue changes (10 in total) and only two of these residues were within
5 of a CDR.
[0152] The full length variable region sequence for EM164 was also aligned against the Kabat
human antibody database and CLL 1.69 was again identified as the most similar human
variable region sequence. Together, these sequence comparisons identified the human
Leukemic B-cell antibody CLL 1.69 as the preferred choice as a human surface for EM
164.
TABLE 7 - The top 5 human sequences extracted from the Kabat database
| 5 Most Homologous Human Antibody Surfaces |
| Antibody |
Light Chain |
SEQ ID NO: |
| MuEM164 |
 |
33 |
| CLL1.69 |
34 |
| MSL5 |
35 |
| CDP571 |
36 |
| LC3aPB |
37 |
| SSbPB |
38 |
| Antibody |
Heavy Chain |
SEQ ID NO: |
| MuEM164 |
 |
39 |
| CLL1.69 |
40 |
| MSL5 |
41 |
| CDP571 |
42 |
| LC3aPB |
43 |
| SSbPB |
44 |
| Alignments were generated by SR (Pedersen 1993). The EM164 surface residues that come
within 5 of a CDR are underlined. |
H. Construction of humanized EM164 genes
[0153] The ten surface residue changes for EM164 (Table 7) were made using PCR mutagenesis
techniques as described above. Because eight of the surface residues for CLL 1.69
were not within 5 of a CDR, these residues were changed from murine to human in all
versions of humanized EM164 (Tables 8 and 9). The two light chain surface residues
that were within 5 of a CDR (Kab at positions 3 and 45) were either changed to human
or were retained as murine. Together, these options generate the four humanized versions
of EM164 that were constructed (Figures 22 and 23).
[0154] Of the four humanized versions, version 1.0 has all 10 human surface residues. The
most conservative version with respect to changes in the vicinity of the CDR is version
1.1, which retained both of the murine surface residues that were within 5 of a CDR.
All four humanized EM164 antibody genes were cloned into an antibody expression plasmid
(Figure 16) for use in transient and stable transfections.
TABLE 8 - Residue changes for versions 1.0-1.3 of humanized EM164 antibody
| |
Changes in all versions |
|
| Light Chain: |
muQ18 to huP18; |
muS67 to huA67 |
|
|
|
|
| Heavy Chain: |
muQ5 to huV5; |
muL11 to huV11; |
muE61 to huQ61; |
muK64 to huQ64; |
| |
muR65 to huG65; |
muA106 to huQ106 |
|
|
|
|
| huEM164 changes |
| |
Light Chain aa3 |
|
Light Chain aa45 |
|
Total 5A |
|
| |
Mu |
hu |
|
mu |
hu |
|
Mouse Res |
|
| v1.0 |
|
V |
|
|
R |
|
0 |
|
| v1.1 |
L |
|
|
K |
|
|
2 |
|
| v1.2 |
L |
|
|
|
R |
|
1 |
|
| v1.3 |
|
V |
|
K |
|
|
1 |
|
I. Comparison of the affinities of humanized EM164 antibody versions with murine EM164
antibody for binding to full-length IGF-I receptor and to truncated IGF-I receptor
alpha chain
[0155] The affinities of the humanized EM164 antibody versions 1.0-1.3 were compared to
those of murine EM164 antibody through binding competition assays using biotinylated
full-length human IGF-I receptor or myc-epitope tagged truncated IGF-I receptor alpha
chain, as described above. Humanized EM164 antibody samples were obtained by transient
transfection of the appropriate expression vectors in human embryonic kidney 293T
cells, and antibody concentrations were determined by ELISA using purified humanized
antibody standards. For ELISA binding competition measurements, mixtures of humanized
antibody samples and various concentrations of murine EM164 antibody were incubated
with indirectly captured biotinylated full-length IGF-I receptor or myc-epitope tagged
truncated IGF-I receptor alpha chain. After equilibration, the bound humanized antibody
was detected using a goat-anti-human-Fab'
2-antibody-horseradish peroxidase conjugate. Plots of ([bound murine Ab]/[bound humanized
Ab]) vs ([murine Ab]/[humanized Ab]), which theoretically yield a straight line with
slope = (
Kd humanized Ab /
Kd murine Ab), were used to determined the relative affinities of the humanized and murine antibodies.
[0156] An exemplary competition assay is shown in Figure 11. An Immulon-2HB ELISA plate
was coated with 100 µL of 5 µg/mL streptavidin per well in carbonate buffer at ambient
temperature for 7 h. The streptavidin-coated wells were blocked with 200 µL of blocking
buffer (10 mg/mL BSA in TBS-T buffer) for 1 h, washed with TBS-T buffer and incubated
with biotinylated IGF-I receptor (5 ng per well) overnight at 4°C. The wells containing
indirectly captured biotinylated IGF-I receptor were then washed and incubated with
mixtures of humanized EM164 antibody (15.5 ng) and murine antibody (0 ng, or 16.35
ng, or 32.7 ng, or 65.4 ng, or 163.5 ng) in 100 µL blocking buffer for 2 h at ambient
temperature and were then incubated overnight at 4°C. The wells were then washed with
TBS-T buffer and incubated with goat-anti-human-Fab'
2-antibody-horseradish peroxidase conjugate for 1 h (100 µL; 1 µg/mL in blocking buffer),
followed by washes and detection using ABTS/H
2O
2 substrate at 405 nm.
[0157] The plot of ([bound murine Ab]/[bound humanized Ab]) vs ([murine Aby[humanized Ab])
yielded a straight line (r
2 = 0.996) with slope (=
Kd humanized Ab /
Kd murine Ab) of 0.52. The humanized antibody version 1.0 therefore bound to IGF-I receptor
more tightly than did murine EM164 antibody. Similar values for the gradient, ranging
from about 0.5 to 0.8, were obtained for competitions of versions 1.0, 1.1, 1.2 and
1.3 of humanized EM164 antibodies with murine EM164 antibody for binding to full-length
IGF-I receptor or to truncated IGF-I receptor alpha chain, which indicated that all
of the humanized versions of EM164 antibody had similar affinities, which were all
better than that of the parent murine EM164 antibody. A chimeric version of EM164
antibody with 92F → C mutation in heavy chain showed a slope of about 3 in a similar
binding competition with murine EM164 antibody, which indicated that the 92F→C mutant
of EM 164 had a 3-fold lower affinity than did murine EM164 antibody for binding to
IGF-I receptor. The humanized EM164 v1.0 antibody showed a similar inhibition of IGF-I
-stimulated growth and survival of MCF-7 cells as did the murine EM 164 antibody (Figure
24). The inhibition of serum-stimulated growth and survival of MCF-7 cells by humanized
EM164 v1.0 antibody was similar to the inhibition by murine EM 164 antibody.
TABLE 9
| Segment |
Light Chain |
Heavy Chain |
| FR1 |
1-23 (with an occasional residue at 0, and a deletion at 10 in Vλ chains) |
1-30 (with an occasional residue at 0) |
| CDR1 |
24-34 (with possible insertions numbered as 27A, B, C, D, E, F) |
31-35 (with possible insertions numbered as 35A, B) |
| FR2 |
35-49 |
36-49 |
| CDR2 |
50-56 |
50-65 (with possible insertions numbered as 52A, B, C) |
| FR3 |
57-88 |
66-94 (with possible insertions numbered as 82A, B, C) |
| CDR3 |
89-97 (with possible insertions numbered as 95A, B, C, D, E, F) |
95-102 (with possible insertions numbered as 100A, B, C, D, E, F, G, H, I, J, K) |
| FR4 |
98-107 (with a possible insertion numbered as 106A) |
103-113 |
| The Kabat numbering system is used for the light chain and heavy chain variable region
polypeptides of the different versions of the EM164 Ab. The amino acid residues are
grouped into Framework (FR) and Complementarity Determining Regions (CDR) according
to position in the polypeptide chain. Taken from Kabat et al. Sequences of Proteins of Immunological Interest, Fifth Edition, 1991,
NIH Publication No. 91-3242 |
J. Process of providing improved anti-IGF-I-receptor antibodies starting from the
murine and humanized antibody sequences described herein
[0158] The amino acid and nucleic acid sequences of the anti-IGF-I receptor antibody EM164
and its humanized variants were used to develop other antibodies that have improved
properties and that are also within the scope of the present invention. Such improved
properties include increased affinity for the IGF-I receptor. Several studies have
surveyed the effects of introducing one or more amino acid changes at various positions
in the sequence of an antibody, based on the knowledge of the primary antibody sequence,
on its properties such as binding and level of expression (
Yang, W. P. et al., 1995, J. Mol. Biol., 254, 392-403;
Rader, C. et al., 1998, Proc. Natl. Acad. Sci. USA, 95, 8910-8915;
Vaughan, T. J. et al., 1998, Nature Biotechnology, 16, 535-539).
[0159] In these studies, variants of the primary antibody have been generated by changing
the sequences of the heavy and light chain genes in the CDR1, CDR2, CDR3, or framework
regions, using methods such as oligonucleotide-mediated site-directed mutagenesis,
cassette mutagenesis, error-prone PCR, DNA shuffling, or mutator-strains of E. coli
(
Vaughan, T. J. et al., 1998, Nature Biotechnology, 16, 535-539;
Adey, N. B. et al., 1996, Chapter 16, pp. 277-291, in "Phage Display of Peptides and
Proteins", Eds. Kay, B. K. et al., Academic Press). These methods of changing the sequence of the primary antibody have resulted, through
the use of standard screening techniques, in improved affinities of such secondary
antibodies (
Gram, H. et al., 1992, Proc. Natl. Acad. Sci. USA, 89, 3576-3580;
Boder, E. T. et al., 2000, Proc. Natl. Acad. Sci. USA, 97, 10701-10705;
Davies, J. and Riechmann, L., 1996, Immunotechnolgy, 2, 169-179;
Thompson, J. et al., 1996, J. Mol. Biol., 256,77-88;
Short, M. K. et al., 2002, J. Biol. Chem., 277, 16365-16370;
Furukawa, K. et al., 2001, J. Biol. Chem., 276, 27622-27628).
[0160] By a similar directed strategy of changing one or more amino acid residues of the
antibody, the antibody sequences described in this invention can be used to develop
anti-IGF-I receptor antibodies with improved functions, such as antibodies having
suitable groups such as free amino groups or thiols at convenient attachment points
for covalent modification for use, for example, in the attachment of therapeutic agents.
K. Alternative expression system for murine, chimeric and other anti-IGF-I receptor
antibodies
[0161] The murine anti IGF-I receptor antibody was also expressed from mammalian expression
plasmids similar to those used to express the humanized antibody (above). Expression
plasmids are known that have murine constant regions including the light chain kappa
and heavy chain gamma-1 sequences (
McLean et al., 2000, Mol Immunol., 37, 837-845). These plasmids were designed to accept any antibody variable region, such as for
example the murine anti-IGF-I receptor antibody, by a simple restriction digest and
cloning. Additional PCR of the anti-IGF-1 receptor antibody was usually required to
create the restriction compatible with those in the expression plasmid.
[0162] An alternative approach for expressing the fully murine anti-IGF-I receptor antibody
was to replace the human constant regions in the chimeric anti-IGF-I receptor antibody
expression plasmid. The chimeric expression plasmid (Figure 16) was constructed using
cassettes for the variable regions and for both the light and heavy chain constant
regions. Just as the antibody variable sequences were cloned into this expression
plasmid by restriction digests, separate restriction digests were used to clone in
any constant region sequences. The kappa light chain and gamma-1 heavy chain cDNAs
were cloned, for example, from murine hybridoma RNA, such as the RNA described herein
for cloning of the anti-IGF-1 antibody variable regions. Similarly, suitable primers
were designed from sequences available in the Kabat database (see Table 10). For example,
RT-PCR was used to clone the constant region sequences and to create the restriction
sites needed to clone these fragments into the chimeric anti-IGF-I receptor antibody
expression plasmid. This plasmid was then used to express the fully murine anti-IGF-I
receptor antibody in standard mammalian expression systems such as the CHO cell line.
TABLE 10 - Primers designed to clone the murine gamma-1 constant region and murine
kappa constant region respectively
| Murine Constant Region Primers |
| Primer name |
Primer Sequence |
SEQ ID NO: |
| MuIgG1 C3endX |
 |
45 |
| MuIgG1 C5endH |
TTTTAAGCTTGCCAAAACGACACCCCCATCTGTCTAT |
46 |
| MuIgKap C3endB |
TTTTGGATCCTAACACTCATTCCTGTTGAAGC |
47 |
| MuIgKap C5endE |
TTTTGAATTCGGGCTGATGCTGCACCAACTG |
48 |
| The primers were designed from sequences available in the Kabat database (Johnson, G and Wu, T.T. (2001) Nucleic Acids Research, 29: 205-206). |
Statement of Deposit
[0163] The hybridoma that makes murine EM164 antibody was deposited with the American Type
Culture Collection, PO Box 1549, Manassas, VA 20108, on June 14, 2002, under the Terms
of the Budapest Treaty, as Accession Number PTA-4457.
| PCT |
|
F170822 |
| Original (for SUBMISSION) - printed on 12.06.2003 09:54:49 AM |
| 0-1 |
Form - PCT/RO/134 (EASY) Indications Relating to Deposited Microorganism(s) or Other Biological Material (PCT
Rule 13bis) |
|
| 0-1-1 |
Prepared using |
PCT-EASY Version 2.92 (updated 01.01.2003) |
| 0-2 |
International Application No. |
PCT/US 03/16211 |
| 0-3 |
Applicant's or agent's file reference |
F170822 |
| |
| 1 |
The indications made below relate to the deposited microorganism(s) or other biological
material referred to In the description on: |
|
| 1-1 |
page |
61 |
| 1-2 |
line |
11 |
| 1-3 |
Identification of Deposit |
|
| 1-3-1 |
Name of depositary institution |
American Type Culture Collection |
| 1-3-2 |
Address of depositary institution |
10801 University Blvd., Manassas, Virginia 20110-2209United States of America |
| 1-3-3 |
Date of deposit |
14 June 2002 (14.06.2002) |
| 1-3-4 |
Accession Number |
ATCC PTA-4457 |
| 1-4 |
Additional Indications |
NONE |
| 1-5 |
Designated States for Which indications are Made |
all designated States |
| 1-6 |
Separate Furnishing of Indications These indications will be submitted to International
Bureau later |
NONE |
| FOR RECEIVING OFFICE USE ONLY |
| 0-4 |
This form was received with the international application: (yes or no) yes |
|
| 0-4-1 |
Authorized officer The closis simpkins |
|
| FOR INTERNATIONAL BUREAU USE ONLY |
| 0-5 |
This form was received by the international Bureau on: |
|
| 0-5-1 |
Authorized officer |
|
SEQUENCE LISTING
[0164]
<110> ImmunoGen, Inc.
<120> ANTI-IGF-I RECEPTOR ANTIBODY
<130> A8338
<140> 10/170, 390
<141> 2002-06-14
<160> 98
<170> PatentIn version 3.3
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<400> 9


<210> 10
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> humanized light chain variable region
<400> 10

<210> 11
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> humanized light chain variable region
<400> 11

<210> 12
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> humanized light chain variable region
<400> 12


<210> 13
<211> 124
<212> PRT
<213> Artificial sequence
<220>
<223> humanized heavy chain variable region
<400> 13

<210> 14
<211>46
<212> DNA
<213> Artificial sequence
<220>
<223> degenerate 3' light chain PCR primer - HindKL
<400> 14
tatagagctc aagcttggat ggtgggaaga tggatacagt tggtgc 46
<210> 15
<211> 36
<212> DNA
<213> Artificial sequence
<220>
<223> degenerate 3' heavy chain PCR primer- Bg121gG1
<400> 15
ggaagatcta tagacagatg ggggtgtcgt tttggc 36
<210> 16
<211> 30
<212> DNA
<213> Artificial sequence
<220>
<223> poly C 5' PCR primer - EcoPolyc
<400> 16
tatatctaga attccccccc cccccccccc 30
<210> 17
<211>32
<212> DNA
<213> Artificial Sequence
<220>
<223> degenerate 5' light chain PCR primer - Sac1 MK
<400> 17
gggagctcga yattgtgmts acmcarwctm ca 32
<210> 18
<211> 32
<212> DNA
<213> Artificial sequence
<220>
<223> degenerate 5' heavy chain PCR primer - EcoR1 MH1
<220>
<221> misc_feature
<222> (18)..(18)
<223> "n" may be any nucleic acid
<400> 18
cttccggaat tcsargtnma gctgsagsag tc 32
<210> 19
<211> 35
<212> DNA
<213> Artificial Sequence
<220>
<223> degenerate 5' heavy chain PCR primer - EcoR1 MH2
<220>
<221> misc_feature
<222> (18)..(18)
<223> "n" may be any nucleotide
<400> 19
cttccggaat tcsargtnma gctgsagsag tcwgg 35
<210> 20
<211> 10
<212> PRT
<213> Mus musculus
<400> 20

<210> 21
<211> 10
<212> PRT
<213> Mus musculus
<400> 21

<210> 22
<211> 24
<212> PRT
<213> Mus musculus
<400> 22

<210> 23
<211>57
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 23
caggtgtaca ctcccaggtc caactggtgc agtctggggc tgaagtggtg aagcctg 57
<210> 24
<211> 29
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 24 29
caatcagaag ttccagggga aggccacac 29
<210> 25
<211> 34
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 25 34
ccttcccctg gaacttctga ttgtagttag tacg 34
<210> 26
<211> 37
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 26 37
caggtgtaca ctccgatgtt gtgatgaccc aaactcc 37
<210> 27
<211> 37
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 27
caggtgtaca ctccgatgtt ttgatgaccc aaactcc 37
<210> 28
<211> 39
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 28
gactagatct gcaagagatg gaggctggat ctccaagac 39
<210> 29
<211> 35
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 29
ttgcagatct agtcagagca tagtacatag taatg 35
<210> 30
<211> 48
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 30
gaatggtacc tgcagaaacc aggccagtct ccaaggctcc tgatctac 48
<210> 31
<211> 28
<212> DNA
<213> Artificial Sequence
<220>
<223> PCR primer
<400> 31
gtggcagtgg agcagggaca gatttcac 28
<210> 32
<211> 28
<212> DNA
<213> Artificial Sequence
<220>
<223> PCR primer
<400> 32
gaaatctgtc cctgctccac tgccactg 28
<210> 33
<211> 19
<212> PRT
<213> Homo sapiens
<400> 33

<210> 34
<211> 18
<212> PRT
<213> Homo sapiens
<400> 34

<210> 35
<211> 19
<212> PRT
<213> Homo sapiens
<400> 35

<210> 36
<211> 18
<212> PRT
<213> Homo sapiens
<400> 36

<210> 37
<211> 18
<212> PRT
<213> Homo sapiens
<400> 37

<210> 38
<211> 18
<212> PRT
<213> Homo sapiens
<400> 38

<210> 39
<211>25
<212>PRT
<213> Homo sapiens
<400> 39

<210> 40
<211> 25
<212> PRT
<213> Homo sapiens
<400> 40

<210> 41
<211> 25
<212> PRT
<213> Homo sapiens
<400> 41

<210> 42
<211> 25
<212> PRT
<213> Homo sapiens
<400> 42

<210> 43
<211> 24
<212> PRT
<213> Homo sapiens
<400> 43

<210> 44
<211> 24
<212> PRT
<213> Homo sapiens
<400> 44

<210> 45
<211> 40
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 45
ttttgagctc ttatttacca ggagagtggg agaggctctt 40
<210> 46
<211> 37
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 46
ttttaagctt gccaaaacga cacccccatc tgtctat 37
<210> 47
<211> 32
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 47
ttttggatcc taacactcat tcctgttgaa gc 32
<210> 48
<211> 31
<212> DNA
<213> Artificial sequence
<220>
<223> PCR primer
<400> 48
ttttgaattc gggctgatgc tgcaccaact g 31
<210> 49
<211> 396
<212> DNA
<213> Mus musculus
<220>
<221> CDS
<222> (1)..(396)
<400> 49


<210> 50
<211> 132
<212> PRT
<213> Mus musculus
<400> 50

<210> 51
<211> 429
<212> DNA
<213> Mus musculus
<220>
<221> CDS
<222> (1)..(429)
<400> 51

<210> 52
<211> 143
<212> PRT
<213> Mus musculus
<400> 52


<210> 53
<211> 10
<212> PRT
<213> Mus musculus
<400> 53

<210> 54
<211> 10
<212> PRT
<213> Mus musculus
<400> 54

<210> 55
<211> 15
<212> PRT
<213> Mus musculus
<400> 55

<210> 56
<211> 100
<212> PRT
<213> Mus musculus
<400> 56

<210> 57
<211> 98
<212> PRT
<213> Mus musculus
<400> 57

<210> 58
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 58

<210> 59
<211> 113
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 59

<210> 60
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 60

<210> 61
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 61


<210> 62
<211> 113
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 62

<210> 63
<211> 113
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 63

<210> 64
<211> 113
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 64


<210> 65
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 65

<210> 66
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 66

<210> 67
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 67

<210> 68
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 68

<210> 69
<211> 113
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<220>
<221> MISC_FEATURE
<222> (28).. (28)
<223> "x" may be any amino acid
<220>
<221> MISC_FEATURE
<222> (101)..(101)
<223> "x" may be any amino acid
<400> 69

<210> 70
<211>124
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 70


<210> 71
<211>120
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 71

<210> 72
<211> 120
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 72


<210> 73
<211> 122
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 73

<210> 74
<211> 120
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 74

<210> 75
<211> 108
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 75

<210> 76
<211> 117
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 76

<210> 77
<211> 120
<212> PRT
<213> Artificial Sequence
<220>
<223> synthetic antibody structure
<400> 77


<210> 78
<211> 120
<212 PRT
<213 Artificial Sequence
<220
<223 synthetic antibody structure
<400> 78


<210> 79
<211> 120
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 79

<210> 80
<211> 115
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<400> 80

<210> 81
<211> 121
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic antibody structure
<220>
<221> MISC_FEATURE
<222> (20)..(20)
<223> "x" may be ary amino acid
<220>
<221> MISC_FEATURE
<222> (34)..(34)
<223> "x" may be ary amino acid
<220>
<221> MISC_FEATURE
<222> (43)..(43)
<223> "x" may be ary amino acid
<220>
<221> MISC_FEATURE
<222> (50)..(50)
<223> "x" may be ary amino acid
<220>
<221> MISC_FEATURE
<222> (52)..(52)
<223> "x" may be any amino acid
<220>
<221> MISC_FEATURE
<222> (54)..(54)
<223> "x" may be any amino acid
<220>
<221> MISC_FEATURE
<222> (57)..(57)
<223> "x" may be any amino acid
<220>
<221> MISC_FEATURE
<222> (59)..(59)
<223> "x" may be any amino acid
<220>
<221> MISC_FEATURE
<212> (99)..(99)
<223> "x" may be any amino acid
<220>
<221> MISC_FEATURE
<222> (100)..(100)
<223> "x" may be any amino acid
<220>
<221> MISC_FEATURE
<222> (103)..(108)
<223> "x" may be any amino acid
<220>
<221> MISC_FEATURE
<222> (116)..(116)
<223> "x" may be any amino acid
<400> 81

<210> 82
<211> 113
<212> PRT
<213> Mus musculus
<400> 82

<210> 83
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> humanized EM164 antibody
<400> 83

<210> 84
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> humanized EM164 antibody
<400> 84

<210> 85
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> humanized EM164 antibody
<400> 85


<210> 86
<211> 113
<212> PRT
<213> Artificial Sequence
<220>
<223> humanized EM164 antibody
<400> 86

<210> 87
<211> 123
<212> PRT
<212> PRT
<213> Mus musculus
<400> 87

<210> 88
<211 > 123
<212> PRT
<213> Artificial sequence
<220>
<223> humanized EM164 antibody
<400> 88

<210> 89
<211> 339
<212> DNA
<213> Artificial sequence
<220>
<223> variable region of humanized EM164 antibody - light chain
<220>
<221 > CDS
<222> (1)..(339)
<400> 89

<210> 90
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic construct
<400> 90


<210> 91
<211> 369
<212> DNA
<213> Artificial Sequence
<220>
<223> variable region of humanized EM164 antibody - heavy chain
<220>
<221 > CDS
<222> (1)..(369)
<400> 91

<210> 92
<211> 123
<212> PRT
<213> Artificial Sequence
<220>
<223> Synthetic construct
<400> 92

<210> 93
<211> 339
<212> DNA
<213> Artificial Sequence
<220>
<223> light chain variable region of humanized EM164 v1.1 antibody
<220>
<221 > CDS
<222> (1)..(339)
<400> 93


<210> 94
<211> 113
<212> PRT
<213> Artificial Sequence
<220>
<223> Synthetic Construct
<400> 94

<210> 95
<211> 39
<212> DNA
<213> Artificial sequence
<220>
<223> light chain variable region of humanized EM164 v1.2 antibody
<220>
<221 > CDS
<222> (1)..(339)
<400> 95

<210> 96
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic Construct
<400> 96


<210> 97
<211 > 339
<212> DNA
<213> Artificial Sequence
<220>
<223> light chain variable region of humanized EM164 v1.3 antibody
<220>
<221> CDS
<222> (1)..(339)
<400> 97

<210> 98
<211> 113
<212> PRT
<213> Artificial sequence
<220>
<223> synthetic Construct
<400> 98
