Technical Field
[0001] The present invention relates to a method of detecting or measuring homocysteine
in a sample. More specifically, the present invention relates to a method of measuring
homocysteine including the step of removing a D-amino acid present in a sample in
advance.
Background Art
[0002] As a method of measuring homocysteine, a method of reacting homocysteine in a sample
with homocysteine methyltransferase and D-methionine methylsulfonium, and then detecting
the produced D-methionine with D-amino acid oxidase has been reported (see
WO 02/02802). However, it is known that biological samples contain D-amino acids such as D-alanine
and D-serine in small amounts, and these amino acids increase in the case of renal
diseases or the like (e.g., see
Fukushima, T., Biol. Pharm. Bull., 1995, Vol. 18, No. 8, pp. 1130-1132). It is believed that D-alanine and D-serine, which can be a substrate of D-amino
acid oxidase, leads to a positive reading in the method of measuring homocysteine.
Therefore, as described in
WO 02/02802, in order to avoid the influence of endogenous D-amino acids that are originally
present in a sample, it is necessary to subtract a value obtained by measurement by
the same operation except that homocysteine methyltransferase is not contained from
a measured value in the case of containing this enzyme. That is to say, it is necessary
to provide a sample blank for each individual sample to measure the amount of endogenous
D-amino acids.
Disclosure of Invention
[0003] It is an object of the present invention to provide a method of measuring homocysteine
that is not affected by endogenous D-amino acids, that is, that does not require sample
blanks.
[0004] As a result of in-depth research in order to achieve the above object, it became
possible to provide a method of measuring homocysteine that is not affected by endogenous
D-amino acids, that is, that does not require sample blanks by leading D-alanine and/or
D-serine to the outside of the reaction system of the homocysteine measurement by
enzyme actions.
[0005] The present invention provides a method for detecting or measuring homocysteine in
a sample, and the method includes the steps of: (a) reacting a D-amino acid present
in a sample with a D-amino acid converting enzyme to convert the D-amino acid into
a substance that does not serve as a substrate of D-amino acid oxidase or D-amino
acid acetyltransferase; (b) reducing homocysteine in the sample with a thiol compound;
(c) reacting the reduced homocysteine with a methyltransferase and D-methionine methylsulfonium
to newly produce D-methionine; and
(d) reacting the D-methionine produced in step (c) with the D-amino acid oxidase in
the presence of an SH reagent to produce hydrogen peroxide, and color-developing the
produced hydrogen peroxide by using an oxidative color-developing agent, or
(d') reacting the D-methionine produced in step (c) with the D-amino acid acetyltransferase
in the presence of acetyl coenzyme A thereby producing coenzyme A; reacting the produced
coenzyme A with acyl coenzyme A synthetase thereby producing acyl coenzyme A; and
reacting the produced acyl coenzyme A with acyl coenzyme A oxidase in the presence
of an SH reagent to produce hydrogen peroxide; and color-developing the produced hydrogen
peroxide by using an oxidative color-developing agent, wherein the thiol compound
is selected from dithiothreitol, mercaptoethanol, N-acetylcysteine, dithioerythritol
and thioglycolic acid and wherein the SH-reagent is selected from Ellman's reagent,
mercaptido forming agents, p-mercuri benzoic acid, alkylating agents, iodoacetic acid
and N-ethylmaleimide.
[0006] In a preferred embodiment, the step (a) is a step of reacting D-alanine present in
a sample with D-alanyl-D-alanine ligase (which may be referred to "Ddl" hereinafter)
in a presence of adenosine triphosphate to convert the D-alanine into D-alanyl-D-alanine
and/or a step of reacting D-serine present in a sample with D-serine dehydratase (which
may be referred to "Dsd" hereinafter) to convert the D-serine into pyruvic acid.
[0007] In a preferred embodiment, the methyltransferase is homocysteine methyltransferase,
and the methyl donor is D-methionine methylsulfonium.
[0008] In a preferred embodiment, in the step (d), the produced hydrogen peroxide is detected
or measured by color-development using peroxidase and an oxidative color-developing
agent.
[0009] The present invention also provides a reagent kit for measuring homocysteine comprising
D-alanyl-D-alanine ligase and/or D-serine dehydratase; a thiol compound; a methyltransferase;
D-methionine methylsulfonium; D-amino acid oxidase or D-amino acid acetyltransferase
and acylcoenzyme A synthetase and acylcoenzyme A oxidase; an SH reagent; and an oxidative
color-developing agent wherein the thiol compound is selected from dithiothreitol,
mercaptoethanol, N-acetylcysteine, dithioerythritol and thioglycolic acid and wherein
the SH-reagent is selected from Ellman's reagent, mercaptido forming agents, p-mercuri
benzoic acid, alkylating agents, iodoacetic acid and N-ethylmaleimide.
Brief Description of Drawings
[0010]
Fig. 1 is a schematic diagram of the reaction in a method of measuring homocysteine
using homocysteine transferase and D-methionine methylsulfonium.
Fig. 2 is a schematic diagram showing construction of expression vector pKdlA.
Fig. 3 is a schematic diagram showing construction of expression vector pKdlB.
Fig. 4 is a graph showing a relationship between the concentration of D-alanyl-D-alanine
ligase and the sensitivity of the homocysteine measurement.
Fig. 5 is a graph showing a relationship between the concentration of D-serine dehydratase
and the sensitivity of the homocysteine measurement.
Fig. 6 are graphs showing a correlation between the concentration of the measured
homocysteine according to (a) a conventional single channel method, (b) a conventional
double channel method, and (c) the method of the present invention and the concentration
measured by a HPLC method.
Best Mode for Carrying Out the Invention
Principle of homocysteine measurement:
[0011] The method of measuring homocysteine of the present invention is based on the principle
that homocysteine in a sample is subjected to a reduction treatment with a thiol compound,
and is reacted with a methyltransferase in the presence of a methyl donor (first process),
and then the produced D-amino acid or D-amino acid derivative is measured (second
process). For example, as shown in Fig. 1, when D-methionine produced in the first
process is reacted with D-amino acid oxidase in the second process, hydrogen peroxide
is produced, and the hydrogen peroxide can be led to an oxidative color-developing
agent commonly used in the presence of an SH reagent so as to be determined colorimetrically.
When the D-methionine is reacted with D-amino acid acetyltransferase, the produced
coenzyme A is led to hydrogen peroxide using acyl coenzyme A synthetase [EC 6.2.1.3]
and acyl coenzyme A oxidase [EC 1.3.3.6], and this can be determined in the same manner.
[0012] The method of detecting or measuring homocysteine of the present invention is characterized
in that in order to eliminate the influence of endogenous D-amino acids when measuring
D-amino acids, first, a D-amino acid present in a sample is reacted with a D-amino
acid converting enzyme to convert the D-amino acid to a substance that does not serve
as a substrate of D-amino acid oxidase or D-amino acid acetyltransferase.
[0013] More specifically, the method of detecting or measuring homocysteine of the present
invention includes the steps of:
(a) reacting a D-amino acid present in a sample with a D-amino acid converting enzyme
to convert the D-amino acid to a substance that does not serve as a substrate of D-amino
acid oxidase or D-amino acid acetyltransferase;
(b) reducing homocysteine in the sample with a thiol compound;
(c) reacting the reduced homocysteine with a methyltransferase and D-methionine methylsulfonium
to newly produce D-methionine; and
(d) reacting the D-methionine produced in step (c) with the D-amino acid oxidase in
the presence of an SH reagent to produce hydrogen peroxide, and color-developing the
produced hydrogen peroxide by using an oxidative color-developing agent, or
(d') reacting the D-methionine produced in step (c) with the D-amino acid acetyltransferase
in the presence of acetyl coenzyme A thereby producing coenzyme A; reacting the produced
coenzyme A with acyl coenzyme A synthetase thereby producing acyl coenzyme A; and
reacting the produced acyl coenzyme A with acyl coenzyme A oxidase in the presence
of an SH reagent to produce hydrogen peroxide; and color-developing the produced hydrogen
peroxide by using an oxidative color-developing agent, wherein the thiol compound
is selected from dithiothreitol, mercaptoethanol, N-acetylcysteine, dithioerythritol
and thioglycolic acid and wherein the SH-reagent is selected from Ellman's reagent,
mercaptido forming agents, p-mercuri benzoic acid, alkylating agents, iodoacetic acid
and N-ethylmaleimide.
[0014] Any sample can be used as a sample to be subjected to detect or measure homocysteine
by the method of the present invention, as long as it is believed to contain homocysteine.
The homocysteine can be present in the form of, not only reduced homocysteine, but
also oxidized homocysteine that is bound to another molecule by a disulfide bond such
as a complex with a protein, a homocysteine dimer and a homocysteine-cysteine dimer.
For example, serum, plasma, blood, urine and a dilution thereof can be used.
Step (a):
[0015] As the D-amino acid converting enzyme that is used in the method of the present invention,
any D-amino acid converting enzyme can be used, as long as it can react with a D-amino
acid to convert the D-amino acid into a substance that does not serve as a substrate
of D-amino acid oxidase or D-amino-acid acetyltransferase so as to lead it to the
outside of the reaction system of the homocysteine measurement. In the present invention,
a D-amino acid converting enzyme that can react with D-alanine and/or D-serine is
preferable. As an enzyme that reacts with D-alanine, D-alanyl-D-alanine ligase [EC
6.3.2.4], D-alanine hydroxylmethyltransferase [EC 2.1.2.7], D-alanine-γ-glutamyl-transferase
[EC 2.3.2.14], or the like can be used. As an enzyme that reacts with D-serine, D-serine
dehydratase [EC 4.3.1.18], diaminopropionate ammonia-lyase [EC 4.3.1.18], or the like
can be used. These enzymes can be used alone or in combination if necessary. As the
enzyme that reacts with D-alanine, D-alanyl-D-alanine ligase is preferably used, and
as the enzyme that reacts with D-serine, D-serine dehydratase is preferably used.
[0017] As Ddl used in the method of the present invention, enzymes derived from E. coli
having an amino acid sequence estimated from the base sequence of GenBank Accession
No. J05319 described in
Biochemistry 30:1673-1682 (1991) or GenBank Accession No. AE000118 REGION: 18688., 19608 described in
Journal of Bacteriology 167: 809-817 (1986) are preferably used. Furthermore, enzymes derived from microorganisms belonging
to the genus of Bacillus, Enterococcus, Lactobacillus and the like also can be used.
The sequence can be modified in some amino acids (e.g., addition, deletion or Substitution
of one or more amino acids), as long as the Ddl activity does not disappear. The Ddl
can be obtained by any methods well-known to those skilled in the art, for example,
by a method of preparing a crude enzyme from the E. coli (e.g., an E. coli strain
that has been transformed by introducing ddl gene obtained from bacteria or the like)
and then purifying it by, for example, various chromatography techniques.
[0018] The D-serine dehydratase (Dsd) used in the method of the present invention is an
enzyme also called D-serine ammonia-lyase, D-serine dehydrase, D-hydroxyamino acid
dehydratase, D-serine hydrase, or D-serine deaminase. Dsd derived from any sources
can be used, as long as it can deaminate D-serine to produce pyruvic acid. Enzymes
derived from E. coli having an amino acid sequence estimated from the.base sequence
of GenBank Accession No. J01603 described in
J. Bacteriol. 154(3), 1508-1512 (1983) are preferably used. Furthermore, Dsds derived from microorganisms belonging to
the genus of Pseudomonas, Bacillus, Salmonella, Fusobacterium, Vibrio, Shigella, Ralstonia
and the like can be used. The sequence can be modified in some amino acids (e.g.,
addition, deletion or substitution of one or more amino acids), as long as the Dsd
activity does not disappear. The Dsd can be obtained by any methods well-known to
those skilled in the art, for example, by a method of preparing a crude enzyme from
E. coli (e.g., an E. coli strain that has been transformed by introducing dsd gene
obtained from bacteria or the like) and then purifying it by, for example, various
chromatography techniques.
[0019] The ddl gene and the dsd gene can be obtained by a method commonly used by those
skilled in the art, based on the estimated amino acid sequences described above. For
example, methods performing plaque hybridization, colony hybridization, PCR or the
like can be employed, where a part or all of the genes encoding Ddl or Dsd or genes
containing these sequences are used as probes. The gene source of Ddl or Dsd is not
limited to E. coli, but other species of bacteria can be used as well.
[0020] In this specification, "ddl gene" refers to a DNA chain or DNA sequence that encodes
a polypeptide having the Ddl activity that exhibits the characteristics of Ddl, and
"dsd gene" refers to a DNA chain or DNA sequence that encodes a polypeptide having
the Dsd activity that exhibits the characteristics of Dsd. In both cases, a polypeptide
having a modification (e.g., addition, deletion or substitution) in the amino acid
sequence that does not affect the activity of the enzyme as described above may be
encoded. Moreover, a plurality of sequences may encode the same polypeptide, for example,
due to degeneracy. Furthermore, the ddl gene or the dsd gene may be derived from natural
sources or may be totally synthesized or semi-synthesized chemically.
[0021] The obtained ddl gene or the dsd gene is, for example, ligated to an expression vector
that can multiplicate and is introduced into a host such as E. coli. The expression
vector used herein may be any expression vector, as long as it can be usually used
for E. coli, and for example, ColE1, pCR1, pBR322, pMB9 and the like can be preferably
used.
[0022] In order to express a large amount of DNA encoding Ddl or Dsd in E. coli, or to increase
the expression amount thereof, a promoter for controlling transcription and translation
may be incorporated into a 5' upstream region of the DNA chain of the vector, and/or
a terminator may be incorporated into a 3' downstream region thereof. Such a promoter
and/or a terminator may be derived from a ddl gene or dsd gene itself, derived from
a gene that is well known such as β-galactosidase gene, or obtained by artificially
modifying these known genes. Therefore, expression vectors in which such control sequences
are incorporated are preferably used as the expression vector, and examples thereof
include pTrc99A, pKK223-3 (which are manufactured by Amersham Pharmacia Biotech),
and pET-3, pET-11 (which are manufactured by Stratagene), although there is no limitation
to these vectors.
[0023] Any microorganisms can be used as a host for expressing Ddl or Dsd, but bacteria
are preferable and E. coli is more preferable. A transformant for expressing Ddl or
Dsd can be produced by a method known in the field of genetic engineering, for example,
by a rubidium chloride method (
J. Mol. Biol., 166:557, 1983). The thus obtained transformant of E. coli whose ability of expressing Ddl or Dsd
is increased is cultured so that Ddl or Dsd can be obtained.
[0024] The Ddl or Dsd obtained in the above-described manner may be used alone or in combination.
[0025] When Ddl is applied to a reagent for measuring homocysteine, the produced D-alanyl-D-alanine
can not be a substrate of D-amino acid oxidase, so that it is possible to eliminate
the D-alanine contained in a sample. There is no limitation regarding the amount of
enzyme used, as long as it has a concentration that can eliminate the D-alanine in
the sample, and for example, the amount can be 0.01 to 100 U/mL, and preferably is
0.1 to 10 U/mL. In the present invention, the amount of Ddl that produces 1µmol of
D-alanyl-D-alanine per minute at 37°C, using D-alanine as the substrate is defined
as 1 unit. There is also no limitation regarding the amounts of ATP and Mg ions to
be used that is necessary to exhibit the activities, as long as they have a concentration
that can eliminate D-alanine, and for example, for ATP, an amount of 0.1 to 10 mM,
and for Mg ions, an amount of 0.1 to 20 mM are preferable. This treatment of a sample
with enzymes can be performed alone, or can be performed simultaneously with the following
steps (b) and (c).
[0026] When Dsd is used as a reagent for measuring homocysteine, D-serine can be removed
from the reaction system by converting D-serine contained in a sample into pyruvic
acid. There is no limitation regarding the amount of enzyme used, as long as it has
a concentration that can eliminate D-serine in the sample, and for example, the amount
can be 0.001 to 10 U/mL, and preferably is 0.01 to 1 U/mL. In the present invention,
the amount of Dsd that degrades 1µmol of D-serine per minute at 37°C is defined as
1 unit. This treatment of a sample with enzymes can be performed alone, or can be
performed simultaneously with the following steps (b) and (c).
Step (b):
[0027] The step (b) in the method of the present invention is a step of reducing homocysteine
in various forms in a sample with a thiol compound into a reduced homocysteine.
[0028] The thiol compound used in the method of present invention is selected from dithiothreitol,
mercaptoethanol, N-acetylcysteine, dithioerythritol, and thioglycolic acid. Any concentration
of the thiol compound may be employed as the concentration of the thiol compound,
as long as it is in a range that allows oxidized homocysteine to reduced homocysteine.
Preferably, the concentration is 0.1 mM or more in terms of thiol groups, and more
preferably 1 mM or more.
Step (c):
[0029] The step (c) in the method of the present invention is a step of reacting the reduced
homocysteine made in the step (b) above with a methyltransferase and a methyl donor
so as to newly produce D-amino acid. In the present invention, a methyltransferase
using homocysteine as a methyl acceptor is preferably used, and D-methionine methylsulfonium
is used as a methyl donor. That is, the reduced homocysteine in the sample is reacted
with a methyltransferase and D-methionine methylsulfonium to produce D-methionine.
[0030] There is no limitation regarding the methyltransferase, as long as it reacts with
D-methionine methylsulfonium to catalyze the production of D-methionine. Examples
of the methyltransferase include homocysteine methyltransferase [EC 2.1.1.10], 5-methyltetrahydrofolic
acid-homocysteine S-methyltransferase [EC 2.1.1.13], and 5-methyl-tetrahydropteroyltriglutamic
acid -homocysteine S-methyltransferase [EC 2.1.1.14]. Preferably, homocysteine methyltransferase
[EC 2.1.1.10] can be used. This enzyme produces D-methionine, using D-methionine methylsulfonium
as a methyl donor, in spite of its low specificity, as reported by G. Grue-Sorensen
et al (J. Chem. Soc. Perkin Trans. I 1091-7 (1984)). The homocysteine methyltransferase
to be used may be derived from any sources, as long as it uses D-methionine methylsulfonium
as a methyl donor. For example, enzymes derived from bacteria, yeasts, rats or the
like can be used. In the present invention, the amount of the homocysteine methyltransferase
that produces 1µmol of D-methionine per minute at 37°C, using homocysteine and D-methionine
methylsulfonium as the substrates, is defined as 1 unit.
Step (d) or (d')
[0031] The step (d) or (d') in the method of the present invention is a step of reacting
the D-amino acid produced in the step (c) with D-amino acid oxidase or D-amino acid
acetyltransferase in the presence of an SH reagent to produce hydrogen peroxide, and
color-developing the produced hydrogen peroxide by using an oxidative color-developing
agent.
[0032] When D-amino acid is reacted with D-amino acid oxidase [EC 1.4.3.3], hydrogen peroxide
is produced. This is led to an oxidative color-developing agent commonly used in the
presence of an SH reagent so as to be determined colorimetrically. The D-amino acid
oxidase may be derived from any sources. For example, it may be derived from animal
organs, bacteria, or fungi. Preferably, those derived from porcine kidney can be used.
In the present invention, the amount of the D-amino acid oxidase that converts 1µmol
of D-alanine into pyruvic acid per minute at 37°C is defined as 1 unit.
[0033] When D-amino acid is reacted with D-amino acid acetyltransferase [EC 2.3.1.36], coenzyme
A is produced. Coenzyme A is reacted with acyl-coenzyme A synthetase [EC 6.2.1.3]
and acyl-coenzyme A oxidase [EC 1.3.3.6], sequencially, then hydrogen peroxide is
produced. The produced hydrogen peroxide can be quantitatively determined in the same
manner. The D-amino acid acetyltransferase may be derived from any sources. For example,
those derived from yeasts can be used.
[0034] The SH reagent is selected from Ellman's reagent, a mercaptido forming agent such
as p-mercuri benzoic acid, and an alkylating agent such as iodoacetic acid and N-ethylmaleimide,
as described in
Biochemistry Dictionary (3rd edition, p.182, Tokyo Kagaku Doujin, 1998). Preferably, an alkylating agent, and more preferably a maleimide compound, and
most preferably, N-ethylmaleimide can be used.
[0035] The produced hydrogen peroxide can develop the color of an ordinary oxidative color-developing
agent with peroxidase. As the oxidative color-developing agent, various Trinder reagents
can be used in combination with a coupler reagent. This method is called the Trinder
method, and is commonly used in the field of clinical chemical analysis, which is
not described herein in detail. It is preferable to use 4-aminoantipyrine as the coupler
reagent and to use ADOS [N-ethyl-N-(2-hydroxy-3-sulfopropyl)-3-methoxyaniline], DAOS
[N-ethyl-N-(2-hydroxy-3-sulfopropyl)-3,5-dimethoxyaniline], HDAOS [N-(2-hydroxy-3-sulfopropyl)-3,5-dimethoxyaniline],
MAOS [N-ethyl-N-(2-hydroxy-3-sulfopropyl)-3,5-dimethylaniline], TOOS [N-ethyl-N-(2-hydroxy-3-sulfopropyl)-3-methylaniline]
or the like as the Trinder reagent. Furthermore, a leuco-type color-developing agent
such as o-tolidine, o-dianisidine, DA-67 [10-(carboxymethylaminocarbonyl)-3,7-bis(dimethylamino)phenothiazine
sodium, manufactured by Wako Pure Chemical Industries Ltd.], and TPM-PS [N,N,N\N',N",N"-hexa(3-sulfopropyl)-4,4',4"-triaminotriphenylmethane
hexasodium salt, Dojindo Laboratories], which do not require the coupler reagent,
can be used as well. In particular, DA-67 and TPM-PS have a mole absorption coefficient
larger than that of the Trinder reagent, so that the determination can be performed
with higher sensitivity.
Reagent kit for homocysteine measurement:
[0036] The present invention provides a reagent kit for homocysteine measurement including
(a) D-alanyl-D-alanine ligase and/or D-serine hydratase, (b) a thiol compound, (c)
a methyltransferase and D-methionine methylsulfonium, and (d) D-amino acid oxidase
or D-amino acid aceetyltransferase + acyl-coenzyme A synthetase + acyl-coenzyme A
oxidase, an SH reagent, and an oxidative color-developing agent wherein the thiol
compound is selected from dithiothreitol, mercaptoethanol, N-acetylcysteine, dithioerythritol
and thioglycolic acid and wherein the SH-reagent is selected from Ellman's reagent,
mercaptido forming agents, p-mercuri benzoic acid, alkylating agents, iodoacetic acid
and N-ethylmaleimide. In general, these (a) to (d) are provided separately, but (a)
to (c) may be provided as a reagent for measurement that is previously prepared by
mixing in a buffer solution.
[0037] Hereinafter, the present invention will be described more specifically by way of
examples, but the present invention is not limited by the following examples.
[Example 1] Preparation of recombinant D-alanyl-D-alanine ligase (A) (Dd1A) derived
from E. coli.
(1-1) Synthesis of probes and obtainment of ddlA gene
[0038] Synthetic primers shown in SEQ ID NOS: 1 and 2, which include EcoRI and PstI recognition
sites, respectively, were synthesized based on the base sequence information of the
ddlA gene from E. coli encoding an enzyme having DdlA activity (
Biochemistry 30:1673-1682 (1991), GenBank Accession No. J05319). PCR was performed in a buffer solution (2 µl of
KOD DNA polymerase (manufactured by TOYOBO Co., Ltd.; hereinafter, referred to as
"KOD"), 10 µl of 10 x KOD buffer solution, 10 µl of dNTP mixture, 5 µl of DMSO and
5 µl of distilled water), using these primers in an amount of 3 nmol (100 pmol/µl,
30 µl) each, and using 2 µl of chromosomal DNA of E. coli JM109 as a template to give
1.09 kb DNA containing the DdlA structural gene.
(1-2) Preparation of plasmid including ddlA gene
[0039] The thus obtained ddlA gene was ligated to a SmaI fragment of E. coli vector pUC19
having DNA replication origin of E. coli ColE1 and ampicillin resistance gene, and
introduced in E. coli JM109 by the rubidium chloride method (
J. Mol. Biol., 166:557, 1983) to give a transformant having a recombinant plasmid containing the ddlA gene. All
the restriction enzymes used in the Examples were obtained from TAKARA BIO INC.
[0040] Using the recombinant plasmid in the transformant, the base sequence was determined
by using 377 Automate Sequencing System (manufactured by PerkinElmer Co., Ltd.) based
on the dideoxy terminator method using fluorescent-labeled primers. The ddlA has a
structural gene region with 1095 bases, and encodes 364 amino acids, which was completely
consistent with the above-described base sequence information on the ddla gene.
(1-3) Preparation of expression vector and transformant including ddlA gene
[0041] The above-described recombinant plasmid was digested with restriction enzymes EcoRI
and PstI to give a DNA fragment, and then thel.09 kb DNA fragment containing the ddlA
DNA was purified by agarose gel electrophoresis. E. coli vector pKK233*3 (manufactured
by Amersham Pharmacia Biotech) having ampicillin resistance gene was digested with
restriction enzymes EcoRI and PstI, and ligated to the obtained 1.09 kb DNA fragment
to give an expression vector pKdlA (see Figure 2). This expression vector pKdlA is
induced to express DdlA by isopropyl-β- D-thiogalactopyranoside (hereinafter, referred
to as "IPTG").
[0042] The obtained expression vector pKdlA was introduced into E. coli JM109 by the rubidium
chloride method, and one in which DdlA is expressed was selected to give a transformant
JM109-ddlA-3.
(1-4) Confirmation of activity of expressed DdlA
[0043] The obtained transformant JM109-ddlA-3 was cultured in 3 ml of LB liquid medium (1%
yeast extract, 2% bactopeptone, and 2% glucose) containing ampicillin at 37°C for
about four hours with shaking. A 0.3 ml aliquot was added to 10 ml of LB liquid medium
and cultured at 37°C for three hours with shaking, and IPTG (TAKARA BIO INC.) was
added thereto such that the final concentration became 1 mM, and was cultured further
for four hours. The culture was centrifuged at 8000 rpm for 15 minutes to collect
cells. Then, after the cells were washed with 1 ml of 100 mM Bis-tris-HCl buffer solution
(pH 7.4) once, they were suspended in a solubilization solution (100 mM Bis-tris-HCl
buffer solution (pH 7.4), 1 mM EDTA, 5 mM MgCh, and 100 ug/ml lysozyme) in a volume
ten times that of the cells. The Suspension was treated twice with an ultrasonic generator
(UD-200 manufactured by TOMY SEIKO Co., Ltd.) at scale 1 for 10 seconds to disrupt
the cells. A supernatant was obtained by centrifugation at 15000 rpm for 10 minutes,
and this was used as a sample for measuring the Ddl activity. As a control, a transformant
of E. coli JM109 strain with non-recombinant pKK223-3 that had been treated in the
same manner was used.
[0044] The enzyme activity was measured in the following manner. First, a reagent for measuring
the activity (100 µl of 20 mM D-alanine, 20 mM ATP, 100 mM HEPES, 40 mM MgCl
2, and 50 µl of 40 mM KCl) was added to the disrupted cell solution (50 µl), and allowed
to react at 37°C for one hour. Then, 2 µl of the reaction mixture was spotted onto
a silica gel thin layer, and then developed using ethanol : 25% aqueous ammonia =
74 : 26 (w/w) as an eluent in a closed vessel.. After development, a ninhydrin solution
(0.1 M citric acid buffer solution saturated with n-butanol, which contains 0.2% of
ninhydrin) was sprayed to detect the produced D-alanyl-D-alanine. The D-alanyl-D-alanine
was produced in the disrupted recombinant cell solution in a significantly larger
amount compared to the disrupted control cell solution.
(1-5) Preparation of DdlA
[0045] The recombinant E. coli obtained in the above steps (1-3), which has high production
ability of DdlA, was inoculated in 200 ml of LB medium (1% yeast extract, 2% bactopeptone,
and 2% glucose) containing ampicillin and was cultured at 37°C for 15 hours. Then,
the culture was inoculated to 1.8 L of LB medium containing ampicillin in a jar fermenter
with a volume of 5 L, and cultured at 37°C for 100 minutes with aeration and stirring.
To the culture, IPTG was added such that the final concentration became 1 mM, and
cultured further for 4 hours. The culture was centrifuged at 8000 rpm for 10 minutes
to collect cells. The cells were suspended in a buffer solution (20 mM Bis-tris- HCl
buffer solution (pH 7.4), 1 mM EDTA, and 5 mM MgCl
2) in a volume nine times that of the cells. The suspension was treated with an ultrasonic
generator (UD-200 manufactured by TOMY SEIKO CO., Ltd.) to disrupt the cells. Then,
the suspension was centrifuged at 15000 rpm for 10 minutes to remove the debris and
thus a crude enzyme solution was obtained.
[0046] Ammonium sulfate was added to the obtained crude enzyme solution so as to be 5% saturation
under ice cooling with stirring, and thereafter was allowed to stand for 30 minutes,
and then was centrifuged at 14000 rpm. Ammonium sulfate was added to the obtained
supernatant so as to be 45% saturation under ice cooling with stirring, and thereafter
allowed to stand for 30 minutes, and then centrifuged at 14000 rpm. The obtained precipitate
was dialyzed overnight against a buffer solution (20 mM Bis-tris-HCl buffer solution
(pH 7.4), 1 mM EDTA, and 5 mM MgCl
2).
[0047] Then, the dialyzed crude enzyme solution was purified by column chromatography (adsorption:
a buffer solution A (20 mM Bis-tris-HCl buffer solution (pH 7.4), 1 mM EDTA, and 5
mM MgCl
2), elution : a buffer solution A - 0.0 to 0.6 M sodium chloride gradient) using Q-Sepharose
FF (manufactured by Amersham Pharmacia Biotech). The Ddl active fractions were collected
and further purified by gel filtration column chromatography with Sephacryl S-100
(manufactured by Amersham Pharmacia Biotech). The obtained active fractions were subjected
to SDS-polyacryl amide gel electrophoresis and stained by Coomassie brilliant blue,
which confirmed that the DdlA was purified to substantially a single band.
[Example 2] Preparation of recombinant D-alanyl-D-alanine ligase (B) (DdlB) derived
from E. coli
(2-1) Synthesis of probe and acquisition of ddlB gene
[0048] Synthetic primers shown in SEQ ID NOS: 3 and 4 were synthesized, based on the base
sequence information of the ddlB gene of E. coli encoding an enzyme having the DdlB
activity (
Journal of Biochemistry 167:809-817 (1986), GenBank Accession No. AE000118 REGION: 18688.. 19608). PCR was performed in a buffer
solution (2 µl of KOD, 10 |x1 of 10 x KOD buffer solution, 10 ul of dNTP mixture,
5 µl of DMSO and 5 ul of distilled water), using these primers in an amount of 3 nmol
(100 pmol/ul, 30 µl) each, and using 2 µl of chromosome DNA of E. coli JM109 as a
template to give 0.92 kb DNA containing the DdlB structural gene.
(2-2) Preparation of plasmid including ddlB gene
[0049] The thus obtained ddlB gene was ligated to a Smal fragment of an E. coli vector pUC19
having DNA replication origin of E. coli ColEl and an ampicillin resistance gene,
and introduced into E. coli JM109 by the rubidium chloride method (
J. Mol. Biol., 166:557, 1983) to give a transformant having a recombinant plasmid containing the ddlB gene.
[0050] Using the recombinant plasmid in the transformant, the base sequence was determined
by using 377 Automate Sequencing System (manufactured by PerkinElmer Co., Ltd.) based
on the dideoxy terminator method using fluorescent-labeled primers. The ddlB has a
structural gene region with 921 bases, and encodes 306 amino acids, which was completely
consistent with the base sequence information on the ddlB gene.
(2-3) Preparation of expression vector and transformant including ddlB gene
[0051] An E. coli vector pKK233-3 (manufactured by Amersham Pharmacia Biotech) was digested
with restriction enzymes EcoRI, and blunt-ended using DNA Blunting Kit (manufactured
by TAKARA BIO INC.), then dephosphorylated using alkaline phosphatase (manufactured
by TAKARA BIO INC.), and a fragment of the DdlB structural gene obtained in (2-1)
was ligated thereto to give an expression vector pKdlB (see Figure 3). This expression
vector pKdlB is induced to express DdlB by IPTG.
[0052] The obtained expression vector pKdlB was introduced into E. coli JM109 by the rubidium
chloride method, and one in which DdlB is expressed was selected to give a transformant
JM109-ddlB-1.
(2-4) Preparation of DdlB
[0053] The recombinant E. coli obtained in the above steps (2-3), which has high production
capacity of DdlB, was inoculated in 200 ml of LB medium (1% yeast extract, 2% bactopeptone,
and 2% glucose) containing ampicillin and was preliminarily cultured at 37°C for 15
hours. The culture was inoculated to 1.8 L of LB medium containing ampicillin in a
jar fermenter with a volume of 5 L, and cultured at 37°C for 100 minutes with aeration
and stirring. To the culture, IPTG was added such that the final concentration became
1 mM and the culture was cultured further for 4 hours. The culture was centrifuged
at 8000 rpm for 10 minutes to collect the cells. The cells were suspended in a buffer
solution (20 mM Bis-tris-HCl buffer solution (pH 7.2), 1 mM EDTA, and 5 mM MgCl
2) in a volume nine times that of the cells. The suspension was treated with an ultrasonic
generator (UD-200 manufactured by TOMY SEIKO CO., Ltd.) to disrupt the cells. Then,
the suspension was centrifuged at 15000 rpm for 10 minutes to remove the debris and
thus a crude enzyme solution was obtained.
[0054] Ammonium sulfate was added to the obtained crude enzyme solution so as to be 25%
saturation under ice cooling with stirring, and thereafter was allowed to stand for
30 minutes, and then centrifuged at 14000 rpm. Ammonium sulfate was added to the obtained
supernatant so as to be 50% saturation under ice cooling with stirring, and thereafter
allowed to stand for 30 minutes, and then centrifuged at 14000 rpm. The obtained precipitate
was dialyzed overnight against a buffer solution (20 mM Bis-tris-HCl buffer solution
(pH 7.2), 1 mM EDTA, and 5 mM MgCl
2).
[0055] Then, the dialyzed crude enzyme solution was purified by column chromatography (adsorption:
a buffer solution A (20 mM Bis-tris-HCl buffer solution (pH 7.2), 1 mM EDTA, and 5
mM MgCl
2), elution : a buffer solution A - 0.0 to 0.6 M sodium chloride gradient) using Q-Sepharose
FF (manufactured by Amersham Pharmacia Biotech). The Ddl active fractions were collected
and further purified by gel filtration column chromatography with Sephacryl S-100
(manufactured by Amersham Pharmacia Biotech). The obtained active fractions were subjected
to SDS-polyacryl amide gel electrophoresis and stained by Coomassie brilliant blue,
which confirmed that the DdlB was purified to substantially a single band.
[Example 3] Preparation of recombinant D-serine dehydratase (Dsd) derived from E.
coli
(3-1) Preparation of expression vector and transformant including dsd gene
[0056] The following two synthetic primers (SEQ ID NOS: 5 and 6) were synthesized, based
on the base sequence information of the dsd gene of E. coli encoding an enzyme having
the Dsd activity.
[0057] PCR was performed, using these primers and using genome DNA of E. coli as a template.
The obtained DNA fragment was digested with EcoRI and HindIII, and ligated to a vector
PUC118 that had been digested with the same restriction enzymes. This was introduced
into E. coli JM109 by the rubidium chloride method to give a transformant having a
recombinant plasmid containing the dsd gene.
(3-2) Preparation of Dsd
[0058] The Dsd expressing cell strain obtained in the above-described manner was cultured
in about 10 L of LB medium containing 100 µg/ml of ampicillin. Enzyme purification
was performed according to the method described in
J. Biol. Chem., 263, 16926-16933, 1988. The cell paste was suspended in SPE lysis buffer (20% sucrose, 20 mM EDTA, 30 mM
potassium phosphate, 0.5 mg/mL lysozyme, pH7.8) in almost the same volume. After incubation,
water containing a protease inhibitor and pyridoxal 5'-phosphorate (PLP) was added
thereto for lysis. The lysate was cooled with ice and a buffer solution B (1M potassium
phosphate, 800 µM PLP, 50 mM EDTA, 10 mM DTT, pH7.5) was added thereto in almost the
same volume, and the cell debris was removed by centrifugation at 18000 rpm for 30
minutes. The obtained supernatant was adjusted to pH 7.3, and nucleic acid was precipitated
by 1% Polymin P and then centrifuged to give supernatant. Ammonium sulfate was added
thereto and dissolved therein so as to be 70% saturation. Then, the solution was stirred
for 40 minutes and then centrifuged at 18000 rpm for two hours. The obtained precipitate
was suspended in a small amount of buffer solution C (10mM potassium phosphate, 80
µM PLP, 1 mM EDTA, 1 mM DTT, pH 7.2) and dialyzed overnight against the same buffer
solution.
[0059] Then, the dialyzed crude enzyme solution was purified by column chromatography using
DEAE-Toyopearl (manufactured by Tosoh Corporation). For adsorption, the buffer solution
C was used, and elution was performed using 0 to 200 mM KCl gradient in this buffer
solution. The Dsd active fractions were collected and precipitated with 70% saturated
ammonium sulfate and recovered. The recovered fractions were dissolved in a small
amount of the buffer solution C, and dialyzed overnight against the same buffer solution
to remove ammonium sulfate. Furthermore, they were dialyzed against a buffer solution
D (1mM potassium phosphate, 1 mM DTT, pH7.0) for 3 to 4 hours.
[0060] The dialyzed partially purified enzyme solution was further purified by hydroxyapatite
column chromatography (Gigapite, manufactured by TOAGOSEI CO., LTD., available from
SEIKAGAKU CORPORATION). This enzyme solution was applied to a column previously equilibrated
with the buffer solution D, washed with the same buffer solution in a volume three
times the column, and eluted with a buffer solution E (10 mM potassium phosphate,
80 µm PLP, 1 mM EDTA, pH7.8). A buffer solution in a volume of 1/10 was added to each
eluted fraction, and Dsd active fractions were collected, precipitated with 70% saturated
ammonium sulfate and recovered. The obtained precipitate was suspended in a small
amount of buffer solution F (100 mM potassium phosphate, 80 µm PLP, 1 mM EDTA, 1 mM
DTT, pH7.8), and dialyzed against this buffer solution to give a purified enzyme.
(3-3) Measurement of Dsd activity
[0061] The Dsd activity was determined by measuring coupling of the pyruvic acid produced
from D-serine with lactate dehydrogenase in the presence of NADH. More specifically,
0.01 to 0.1 U Dsd was added to 100 mM D-serine, 0.5 mM NADH and 5 U lactate dehydrogenase
at 37 °C to initiate a reaction, and a decrease of the absorbance at 340 nm was traced.
[Example 4] Prevention of influence of D-alanine by DdlA, DdlB and Dsd
[0062] Samples (1 to 5) were prepared in the following manner:
Sample 1: Normal control blood serum SERACLEAR HE (manufactured by Azwell Co. Ltd.)
Sample 2: Addition of 25 µM of homocystine (corresponding to 50 µM of homocysteine)
to the sample 1
Sample 3: Addition of 100 µM of D-alanine to the sample 2
Sample 4: Addition of 500 µM of D-serine to the sample 2
Sample 5: Addition of 100 µM of D-alanine and 500 µM of D-serine to the sample 2
[0063] First reagents (I to V) and a second reagent were prepared in the following manner:
First reagent:
Reagent I: 50 mM Bicine (pH 8.0), 123 U/L homocysteine methyltransferase (derived
from bacteria), 5.6 mM dithiothreitol, 0.06 mM D-methionine methylsulfonium, 1 mM
zinc bromide, 0.3 mM DA-67, 1 mM ATP, 1 mM magnesium chloride
Reagent II: Addition of 0.2285 mg protein/mL of DdlB to the reagent I
Reagent III: Addition of 2.0875mg protein/mL of DdlA to the reagent I
Reagent IV: Addition of 1 U/mL of Dsd to the reagent I
Reagent V: Addition of 0.2285 mg protein/mL of DdlB and 1U / mL of Dsd to the reagent
I at the same time
Second reagent:
A reagent containing 50 mM citric acid (pH 5.6), 23 mM NEM, 6.4 U/mL D-amino acid
oxidase derived from porcine kidney, and 5.5 U/mL peroxidase
[0064] Measurement was performed using Hitachi 7170 in the following manner. Any one of
the first reagents in an amount of 180 µL was added to each of the samples 1 to 5
in an amount of 15 µL, and allowed to react at 37°C for 5 minutes. Then, 120 µL of
the second reagent was added thereto, and further allowed to react at 37°C for 5 minutes.
The absorbance change (dominant wavelength 660 nm, secondary wavelength 750nm) from
the detection point 16th to 34th was measured.
[0065] First, the absorbance change for the samples 1 and 2 were measured with the reagents
I to V, respectively, and the measurement sensitivity with respect to the homocysteine
added to the samples in each case was taken as 100 %. Then, the absorbance change
for the samples 3 to 5 were measured with the reagents I to V. The measurement sensitivities
of the samples 3 to 5 were shown in Table 1.
Table 1
|
Sample 3 |
Sample 4 |
Sample 5 |
D-Ala |
D-Ser |
D-Ala+D-Ser |
Reagent I |
Control |
148% |
123% |
169% |
Reagent II |
D-alanyl-D-alanine ligase (B) (DdlB) |
112% |
119% |
128% |
Reagent III |
D-alanyl-D-alanine ligase (A) (DdlA) |
103% |
117% |
117% |
Reagent IV |
D-serine dehydratase (Dsd) |
148% |
100% |
147% |
Reagent V |
DdlB + Dsd |
112% |
101% |
112% |
[0066] As seen from these results, in the control, because of the influence of D-alanine
and D-serine, the measurement value was high, whereas when DdlB or DdlA was contained
in the measurement reagent, the influence of D-alanine in the sample was reduced,
and when Dsd was contained, the influence of D-serine in the sample was reduced. Furthermore,
it is evident that when both are used simultaneously, the influence of D-alanine and
D-serine can be reduced at the same time.
[Example 5] Elimination of D-alanine and D-serine by Ddl and Dsd
[0067] Samples (four types) were prepared in the following manner:
Sample 1: Normal control serum SERACLEAR HE (manufactured by Azwell Co. Ltd.)
Sample 2: Addition of 25 µM of homocystine (corresponding to 50 µM of homocysteine)
to the sample 1.
Sample 6: Addition of 200 µM of D-alanine to the sample 2
Sample 7: Addition of 1000 µM of D-serine to the sample 2
[0068] First reagents and a second reagent were prepared in the following manner:
First reagents:
A reagent in which 0, 0.073, 0.145, 0.29 or 0.58 U/mL of DdlB or 0, 0.125, 0.25 or
0.5 U/ml of Dsd was added to a reagent containing 50 mM Bicine (pH 8.0), 123 U/L homocysteine
methyltransferase (derived from bacteria), 5.6 mM dithiothreitol, 0.06 mM D-methionine
methylsulfonium, 1 mM zinc bromide, 0.3 mM DA-67, 5 mM ATP, and 10 mM magnesium chloride
Second reagent:
A reagent containing 50 mM citric acid (pH 5.6), 23 mM NEM, 6.4 U/mL D-amino acid
oxidase derived from porcine kidney, and 5.5 U/mL peroxidase
[0069] Measurement was performed using Hitachi 7170 in the following manner. First, 180
µL of first reagent was added to 15 µL of the sample, and allowed to react at 37°C
for 5 minutes. Then, 120 µL of the second reagent was added thereto, and further allowed
to react at 37°C for 5 minutes. The absorbance change (dominant wavelength 660 nm,
secondary wavelength 750nm) from the detection point 16th to 34th was measured.
[0070] The results are shown in Figs. 4 and 5.
[0071] Fig. 4 shows the concentration of DdlB on the horizontal axis, and the relative sensitivity
at the time of homocysteine measurement on the vertical axis. It was confirmed that,
by using about 0.5 U/mL of DdlB, the influence of 200 mM D-alanine was substantially
prevented.
[0072] Fig. 5 shows the concentration of Dsd on the horizontal axis, and the relative sensitivity
at the time of homocysteine measurement on the vertical axis. By using about 0.2 U/mL
of Dsd, the influence of 1000 mM D-serine was substantially prevented.
[Example 6] Prevention of influence of D-amino acid in a sample by Ddl and Dsd
[0073] Twelve samples of EDTA plasma were used as samples. As the standard, a sample in
which 50 µM D-methionine was added to a control blood serum was used.
[0074] Three first reagents (i to iii) and a second reagent (used in common) were prepared
in the following manner:
First reagents:
Reagent i: 50 mM Bicine (pH 8.0), 126 U/L homocysteine methyltransferase (derived
from bacteria), 5.6 mM dithiothreitol, 0.06 mM D-methionine methylsulfonium, 1 mM
zinc bromide, 0.3 mM DA-67
Reagent ii: excluding the homocysteine methyltransferase from the reagent i
Reagent iii: Addition of 5 mM ATP, 10 mM magnesium chloride, 0.58 U/mL DdlB, and 1
U/mL Dsd to the reagent i
Second reagent:
A reagent containing 50 mM citric acid (pH 5.6), 23 mM NEM, 6.4 U/mL D-amino acid
oxidase derived from porcine kidney, and 5.5 U/mL peroxidase
[0075] Measurement was performed using Hitachi 7170 in the following manner. Any one of
the first reagents in an amount of 180 µL was added to 15 µL of the sample, and allowed
to react at 37°C for 5 minutes. Then, 120 µL of the second reagent was added thereto,
and further allowed to react at 37°C for 5 minutes. The absorbance change (dominant
wavelength 660 nm, secondary wavelength 750nm) from the detection point 16th to 34th
was measured. The homocysteine concentration in the sample was obtained based on the
absorbance change of the Standard. The value obtained as a result of measurement with
only the reagent i was taken as the value according to the conventional single Channel
method, the value obtained as a result of taking a difference between measurements
with the reagent i and the reagent ii was taken as the value according to the conventional
double Channel method, and the value obtained as a result of measurement with the
reagent iii was taken as the value according to the method of the present invention.
Each of these values was compared with the value measured according to the HPLC method.
[0076] As seen from Fig. 6, compared with the conventional Single Channel method, the method
of the present invention has an improved correlation with the HPLC method, and exhibits
a comparable correlation to the conventional double Channel method.
Industrial Applicability
[0077] According to the present invention, homocysteine can be measured without being affected
by endogenous D-amino acid and without taking a sample blank. That is to say, homocysteine
can be measured accurately by simple operations.
SEQUENCE LISTING
[0078]
<110> Azwell Inc.
<120> A method of measuring homocysteine
<130> P2-03A03191
<160> 6
<170> Patent in version 3.1
<210> 1
<211> 26
<212> DNA
<213> Artificial Sequence
<220>
<223> primer
<400> 1
gcgaattcat ggaaaaactg cgggta 26
<210> 2
<211> 26
<212> DNA
<213> Artificial Sequence
<220>
<223> primer
<400> 2
ggctgcagtt acattgtggt tttcaa 26
<210> 3
<211> 21
<212> DNA
<213> Artificial Sequence
<220>
<223> primer
<400> 3
atgactgata aaatcgcggt c 21
<210> 4
<211> 21
<212> DNA
<213> Artificial Sequence
<220>
<223> primer
<400> 4
ttagtccgcc agttccagaa t 21
<210> 5
<211> 31
<212> DNA
<213> Artificial Sequence
<220>
<223> primer
<400> 5
ggtgaattca aagagacgta ctatggaaaa c 31
<210> 6
<211> 30
<212> DNA
<213> Artificial Sequence
<220>
<223> primer
<400> 6
ggtaagcttt tgcgatgctg cgttgaaacg 30