FIELD OF THE INVENTION
[0001] The present invention relates to a series of novel imidazo[4,5-c]pyridine compounds,
processes for their preparation, their use to treat or prevent viral infections and
their use to manufacture a medicine to treat or prevent viral infections, particularly
infections with viruses belonging to the family of the Flaviviridae and Picornaviridae
and more preferably infections with hepatitis-C-virus (HCV).
BACKGROUND OF THE INVENTION
[0002] The family of the Flaviviridae consists of 3 genera, the pestiviruses, the flaviviruses
and the hepaciviruses and also contains the hepatitis G virus (HGV/GBV-C) that has
not yet been assigned to a genus. Pestiviruses such as the Classical Swine Fever Virus
(CSFV), the Bovine Viral Diarrhea Virus (BVDV) and the Border Disease Virus (BDV)
cause infections of domestic livestock (respectively pigs, cattle and sheep) and are
responsible for significant economic losses world-wide. BVDV, the prototypic representative
of the pestivirus genus is ubiquitous and causes a range of clinical manifestations,
including abortion, teratogenesis, respiratory problems, chronic wasting disease,
immune system dysfunction, and predisposition to secondary viral and bacterial infections
and may also cause acute fatal disease. Fetuses of cattle can be infected persistently
with BVDV, these animals remain viremic throughout life and serve as a continuous
source for virus spread in herds.
[0003] Vaccines are used in some countries with varying degrees of success to control pestivirus
disease. In other countries, animal culling and slaughter are used to contain pestivirus
disease outbreaks.
[0004] The World Health Organization estimates that world-wide 170 million people (3% of
the world's population) are chronically infected with HCV. These chronic carriers
are at risk of developing cirrhosis and/or liver cancer. In studies with a 10 to 20
year follow-up, cirrhosis developed in 20 - 30% of the patients, 1 to 5% of who may
develop liver cancer during the next then years. The only treatment option available
today is the use of interferon α-2 (or its pegylated from) either alone or combined
with ribavirin. However, sustained response is only observed in about 40% of the patients
and treatment is associated with serious adverse effects. There is thus an urgent
need for potent and selective inhibitors of the replication of the HCV in order to
treat infections with HCV. Furthermore, the study of specific inhibitors of HCV replication
has been hampered by the fact that it is not possible to propagate HCV (efficiently)
in cell culture. Since HCV and pestiviruses belong to the same virus family and share
many similarities (organization of the genome, analogous gene products and replication
cycle), pestiviruses have been adopted as a model and surrogate for HCV. For example,
BVDV is closely related to hepatitis C virus (HCV) and used as a surrogate virus in
drug development for HCV infection.
[0006] Coxsackie viruses belong to the group of the enteroviruses, family of the Picornaviridae.
They cause a heterogeneous group of infections including herpangina, aseptic meningitis,
a common-cold-like syndrome, a non-paralytic poliomyelitis-like syndrome, epidemic
pleurodynia (an acute, febrile, infectious disease generally occurring in epidemics),
hand-foot-mouth syndrome, pediatric and adult pancreatitis and serious myocarditis.
[0007] Currently only pleconaril (3-13,5-dimethyl-4-[[3-methyl-5-isoxazolyl)propyl]phenyl]-5-(trifluoromethyl-1,2,4-oxadiazole))
and enviroxime (2-amino-1-(isopropylsulfonyl)-6-benzimidazole phenyl ketone oxime)
have been studied clinically for the treatment of infections with enteroviruses. Pleconaril
is a so called "capsid function-inhibitor"; enviroxime prevents the formation of the
RNA replicative intermediate. Enviroxime resulted in only modest clinical and virological
benefit in some studies and no benefits in others. Clinical response with pleconaril
has been observed in some studies, but the compound has not been approved by the
Food and Drug Administration (hearing of March 18th, 2002).
[0008] Relevant disclosures include
U.S. Patent Nos. 4,914,108;
4,988,707;
4,990,518;
5,137,896;
5,208,242;
5,227,384;
5,302,601;
5,374,638;
5,405,964;
5,438,063;
5,486,525;
6,479,508; and U.S. Patent Publication No.
US2003/0108862 A1, Canadian Patent No.
2423800 A1, German Patent Nos.
4211474 A1,
4236026,
4309969,
4318813, European Patent Nos.
EP 0138 552 A2,
EP 0 706 795 A2,
EP 1 132 381 A1, Great Britain Patent No.
2158440 A,
PCT Patent Publication Nos. WO 00/20416,
WO 00/39127,
WO 00/40583,
WO 03/007945 A1,
WO 03/010140 A2,
WO 03/010141 A2,
WO 93/02080,
WO 93/14072,
WO 96/11192,
WO 96/12703,
WO 99/27929,
Akamatsu, et aL, New Efficient Route for Solid-Phase Synthesis of Benzimidazole Derivatives",
4:475-4.83, J. COMB. CHEM, 2002,
Cleve et al., "Derivate des Imidazo[4.5-b]- und Imidazo[4.5-c]pyridins", 747:158-171,
JUSTUS LIEBIGS ANNALEN DER CHEMICA, 1971,
Kiyama, et al., "Synthesis and Evaluation of Novel Nonpeptide Angiotensin II Receptor
Antagonists: Imidazo[4,5-c]pyzidine Derivatives with an Aromatic Substituent", 43(3):450-60,
CHEM PHARM BULL, 1995,
Mederski et al., "Synthesis and Structural Assignment of Some N-substituted Imidazopyridine
Derivatives", 48(48):10549-58, TETRAHEDRON, 1992,
Yutilov et al., 23(1):56-9, KHIMIKO-FARMATSEVTICHESKII ZHURNAL, 1989.
[0009] A need exists for compounds having antiviral and other desirable properties, such
as bioavailability, efficacy, nontoxicity, optimal clearance, potency and the like.
In particular, a need exists for compounds having selective activity against viruses
belonging to the family of Flaviviridae including hepatitis C virus, and against viruses
belonging to the family of Picornaviridae. These and other objects of this invention
will be apparent to one skilled in the art from consideration of this specification
as a whole.
SUMMARY OF THE INVENTION
[0010] The present invention provides compounds having the formula (C),

wherein:
R1 is aryl, or aromatic heterocycle, wherein each is substituted with 1, 2, or 3 R6;
Y is a single bond;
R2 and R4 are independently selected from hydrogen, C1-18 alkyl, C2-18 alkenyl, C2-18 alkynyl, C1-18 alkoxy, C1-18 alkylthio, halogen, -OH, -CN, -NO2, -NR7R8, haloalkyloxy, haloalkyl, -C(=O)R9, -C(=S)R9, SH, aryl, aryloxy, arylthio, arylalkyl, C1-18 hydroxyalkyl, C3-10 cycloalkyl, C3-10 cycloalkyloxy, C3-10 cycloalkylthio, C3-10 cycloalkenyl, C7-10 cycloalkynyl, or heterocycle;
X is selected from C1-C10 alkylene, C2-10 alkenylene or C2-10 alkynylene, where each optionally includes one or more heteroatoms selected from
O, S, or N, provided any such heteroatom is not adjacent to the N in the imidazopyridyl
ring;
R3 is an aromatic heterocycle substituted with 1 or more R17;
R5 is selected from hydrogen; C1-18 alkyl, C2-18 alkenyl, C2-18 alkynyl, C1-18 alkoxy, C1-18 alkylthio, halogen, -OH, -CN, -NO2, -NR7R8, haloalkyloxy, haloalkyl, -C(=O)R9, -C(=O)OR9, -C(=S)R9, SH, aryl, aryloxy, arylthio, arylalkyl, C1-18 hydroxyalkyl, C3-10 cycloalkyl, C3-10 cycloalkyloxy, C3-10 cycloalkylthio, C3-10 cycloalkenyl, C7-10 cycloalkynyl, or heterocycle;
R6 is selected from hydrogen, C1-18 alkyl, C2-18 alkenyl, C2-18 alkynyl, C1-18 alkoxy, C1-18 alkylthio, C1-18 alkylsulfoxide, C1-18 alkylsulfone, C1-18 haloalkyl, C2-18 halo-alkenyl, C2-18 halo-alkynyl, C1-18 halo-alkoxy, C1-18 halo-alkylthio, C3-10 cycloalkyl, C3-10 cycloalkenyl, C7-10 cycloalkynyl, halogen, OH, CN, cyanoalkyl, -CO2R18, NO2, -NR7R8, C1-18 haloalkyl, C(=O)R18, C(=S)R18, SH, aryl, aryloxy, arylthio, arylsulfoxide, arylsulfone, arylsulfonamide, aryl(C1-18)alkyl, aryl(C1-18)alkyloxy, aryl(C1-18)alkylthio, heterocycle and C1-18 hydroxyalkyl, where each is optionally substituted with 1 or more R19;
R7 and R8 are independently selected from hydrogen, C1-18 alkyl, C1-18 alkenyl, aryl, C3-10 cycloalkyl, C4-10 cycloalkenyl, heterocycle, -C(=O)R12; -C(=S) R12, an amino acid residue linked through a carboxyl group thereof, or R7 and R8 are taken together with the nitrogen to form a heterocycle;
R9 and R18 are independently selected from hydrogen, OH, C1-18 alkyl, C2-18 alkenyl, C3-10 cycloalkyl, C4-10 cycloalkenyl, C1-18 alkoxy, -NR15R16, aryl, an amino acid residue linked through an amino group of the amino acid, CH2OCH(=O)R9a, or CH2OC(=O)OR9a where R9a is C1-C12 alkyl, C6-C70 aryl, C6-C20 alkylaryl or C6-C20 aralkyl;
R10 and R11 are independently selected from the goup consisting of hydrogen, C1-18 alkyl, C2-18 alkenyl, C3-10 cycloalkyl, C4-10 cycloalkenyl, aryl, -C(=O)R12, heterocycle, or an amino acid residue;
R12 is selected from the group consisting of hydrogen, C1-18 alkyl, C2-18 alkenyl, aryl, C3-10 crycloalkyl, C4-10 cycloalkenyl, or an amino acid residue;
R15 and R16 are independently selected from hydrogen, C1-18 alkyl, C2-18 alkenyl, C2-18 alkenyl, aryl, C3-10 cycloalkyl, C4-10 cycloalkenyl, or an amino acid residue;
R17 is aryl substituted with 1, 2, or 3 R19;
R19 is selected from hydrogen, C1-18 alkyl, C2-18 alkenyl, C2-18 alkynyl, C1-18 alkoxy, C2-18 alkenyloxy, C2-18 alkynyloxy, C1-18 alkylthio, C3-10 cycloalkyl, C4-10 cycloalkenyl, C4-10 cycloalkynyl, halogen, -OH, -CN, cyanoalkyl, -NO2, -NR20R21, C1-18 haloalkyl, C1-18 haloalkyloxy, -C(=O)R18, -C(=O)OR18, -OalkenylC(=O)OR18, -OalkylC(=O)NR20R21, -OalkylOC(=O)R18, -C(=S)R18, SH, -C(=O)N(C1-6 alkyl), -N(H)S(O)(O)(C1-6 alkyl), aryl, heterocycle, C1-18alkylsulfone, arylsulfoxide, arylsulfonamide, aryl(C1-18)alkyloxy, aryloxy, aryl(C1-18 alkyl)oxy, arylthio, aryl(C1-18 )alkylthio or aryl(C1-18)alkyl, where each is optionally substituted with 1 or more =O, NR20R21, CN, C1-18 alkoxy, heterocycle, C1-18 haloalkyl, heterocycle alkyl, heterocycle connected to R17 by alkyl, alkoxyalkoxy or halogen;
R20 and R21 are independently selected from hydrogen, C1-18 alkyl, C2-18 alkenyl, C2-18 alkynyl, aryl, C3-10 cycloalkyl, C4-10 cycloalkenyl, -C(=O)R12, or -C(=S)R12;
whereby heterocycle means a 4, 5, 6, 7, 8, or 9 membered single or fused ring system
containing one or more heteroatoms selected from the group consisting of O, N or S;
whereby aryl means an aromatic hydrocarbon containing 1 or more rings with 4 to 6
carbon atoms in each; and
salts, tautomers, stereoisomers and solvates thereof.
[0011] An embodiment of the present invention provides compounds of the formula (C) wherein
Y is a single bond, and R
1 is aryl.
[0012] Another embodiment of the present invention provides compounds of formula (C) wherein
X is C
1-C
10 alkylene, C
2-10 alkenylene or C
2-10 alkynylene.
[0013] Another embodiment of the present invention provides compounds of formula (C) wherein
R
3 is heterocylic.
[0014] Another embodiment of the present invention provides compounds of formula (C) wherein
R
3 is heterocyclic substituted with R
17 where Q is a bond and M is aryl.
[0015] Another embodiment of the present invention provides compounds of formula (C) wherein
Y is a single bond, and R
1 is phenyl.
[0016] Another embodiment of the present invention provides compounds of formula (C) wherein
R
3 is isoxazole substituted with R
17 where Q is a bond and M is aryl.
[0017] Another embodiment of the present invention provides compounds of formula (C) wherein
R
3 is isoxazole substituted with R
17 where Q is a bond and M is phenyl.
DETAILED DESCRIPTION OF THE INVENTION
[0018] "Alkyl" means saturated hydrocarbon moiety where the moiety may be acyclic, cyclic
or a combination of acyclic and cyclic portions. The acyclic portion may contain 1
to 3 carbon atoms, and each ring may contain 3 to 6 carbon atoms (for example, 3-methylcyclohexyl).
Within this definition, the term "cycloalkyl" refers to the saturated hydrocarbon
moieties that are cyclic. Examples of "alkyl" include methyl, ethyl, 1-propyl, 2-propyl,
1-butyl, 2-methyl-1-propyl(i-Bu), 2-butyl (s-Bu) 2-methyl-2-propyl (t-Bu), 1-pentyl
(n-pentyl), 2-pentyl, 3-pentyl, 2-methyl-2-butyl, 3-methyl-2-butyl, 3-methyl-1-butyl,
2-methyl-1-butyl, 1-hexyl, 2-hexyl, 3-hexyl, 2-methyl-2-pentyl, 3-methyl-2-pentyl,
4-methyl-2-pentyl, 3-methyl-3-pentyl, 2-methyl-3-pentyl, 2,3-dimethyl-2-butyl, 3,3-dimethyl-2-butyl,
cyclopropyl, cyclobutyl, cyclopentyl and cyclohexyl, cyclopropyl, cyclobutyl, cyclopentyl,
cycloheptyl, cyclooctyl and the like, or a C
7-10 polycyclic saturated hydrocarbon radical having from 7 to 10 carbon atoms such as,
for instance, norbornyl, fenchyl, trimethyltricycloheptyl or adamantyl.
[0019] "Alkenyl" means a hydrocarbon moiety with at least one site of double bond unsaturation
where the moiety may be acyclic, cyclic or a combination of acyclic and cyclic portions.
The acyclic portion may contain 1 to 3 carbon atoms, and each cyclic portion may contain
3 to 6 carbon atoms. A site of double bond unsaturation may be in a acyclic portion,
a cyclic portion. In the instance of a moiety having a combination of acyclic and
cyclic portions, there may be a site of double bond unsaturation in each of the portions.
Within this definition, the term "cycloalkenyl" refers to the double bond unsaturated
hydrocarbon moieties that are cyclic. Examples the term "alkenyl" include, but are
not limited to, ethylene or vinyl (-CH=CH
2), allyl (-CH
2CH=CH
2), cyclopentenyl (-C
5H
7), 5-hexenyl (-CH
2CH
2CH
2CH
2CH=CH
2), 1-cyclopent-1-enyl, 1-cyclopent-2-enyl, 1-cyclopent-3-enyl, 1-cyclohex-1-enyl,
1-cyclohex-2-enyl, and 1-cyclohex-3-enyl. The double bond optionally is in the cis
or trans configuration.
[0020] "Alkynyl" means a hydrocarbon moiety with a least one site of triple bond unsaturation
where the moiety may be acyclic, cyclic or a combination of acyclic and cyclic portions.
The acyclic portion may contain contain 1 to 3 carbon atoms, and each cyclic portion
may contain 7 or more carbon atoms. Within this definition, the term "cycloalkynl"
refers to triple bond unsaturated hydrocarbon moieties that are cyclic. Examples of
the term "alkynyl" include, but are not limited to, -C≡CH,-CH
2C≡CH, -CH
2C≡C-cyclohexyl, or -CH
2-cycloheptynyl.
[0021] The suffix "-ene" used in connection with alkyl, alkenyl and alkynyl groups refers
to such groups with at least 2 sites of substitution. Such polyvalent hydrocarbon
radicals include, but are not limited to, methylene (-CH
2-) 1,2-ethylene (-CH
2CH
2-), 1,3-propylene (-CH
2CH
2CH
2-), 1,4-butylene (-CH
2CH
2CH
2CH
2-), 1,2-ethylene (-CH=CH-), -C□C-, propargyl (-CH
2C□C-), and 4-pentynyl (-CH
2CH
2CH
2C□CH-).
[0022] "Aryl" means an aromatic hydrocarbon containing 1 or more rings, generally 1, 2 or
3, with 4 to 6 carbon atoms in each, ordinarily 5 or 6 carbon atoms.
[0023] "Arylalkyl," "arylalkenyl" and "arylalkynyl" means an alkyl, alkenyl or alkynyl radical,
respectively, in which one of the hydrogen atoms, typically a terminal or sp3 carbon
atom, is replaced with an aryl radical. Typical arylalkyl groups include, but are
not limited to, benzyl, 2-phenylethan-1-yl, 2-phenylethen-1-yl, naphthylmethyl, 2-naphthylethan-1-yl,
2-naphthylethen-1-yl, naphthobenzyl, 2-naphthophenylethan-1-yl and the like.
[0024] As noted, carbocycles optionally are found as single rings or multiple ring systems.
Ordinarily the hydrocarbons of the compounds of formula (A) are single rings. Monocyclic
carbocycles generally have 3 to 6 ring atoms, still more typically 5 or 6 ring atoms.
Bicyclic carbocycles typically have 7 to 12 ring atoms, e.g. arranged as a bicyclo
[4,5], [5,5], [5,6] or [6,6] system, or 9 or 10 ring atoms arranged as a bicyclo [5,6]
or [6,6] system.
[0025] If the number of carbon atoms is unspecified for a hydrocarbon, typically the number
of carbon atoms will range from 1 to 18, except that the number of carbons typically
will range from 2 to 18 for unsaturated hydrocarbons and from 6 to 10 for aryl.
[0026] "Heterocyclic" or "heterocycle" means any 4, 5, 6, 7, 8 or 9 membered single or fused
ring system containing one or more heteroatoms selected from the group consisting
of O, N or S. Heterocycles optionally are entirely aromatic, entirely saturated, or
contain 1 or more intra-ring sites of unsaturation, typically double bonds. Multiple
heterocyclic rings (one or more of which contains a heteroatom) are bridged or spiro.
Generally, the heterocyclic rings will be aromatic, and usually they are single rings.
Examples of heterocycles include oxazacyloalkyl, morpholinyl, dioxacycloalkyl, thiacycloalkenyl,
pyridyl, dihydroypyridyl, tetrahydropyridyl (piperidyl), thiazolyl, tetrahydrothiophenyl,
furanyl, thienyl, pyrrolyl, pyranyl, pyrazolyl, pyrazolidinyl, pyrazolinyl, imidazolyl,
tetrazolyl, benzofuranyl, thianaphthalenyl, indolyl, indolenyl, quinolinyl, isoquinolinyl,
benzimidazolyl, piperidinyl, piperazinyl, pyrrolidinyl, 2-pyrrolidonyl, pyrrolinyl,
tetrahydrofuranyl, bis-tetrahydrofuranyl, tetrahydropyranyl, bis-tetrahydropyranyl,
tetrahydroquinolinyl, tetrahydroisoquinolinyl, decahydroquinolinyl, octahydroisoquinolinyl,
azocinyl, triazinyl, 6H-1,2,5-thiadiazinyl, 2H,6H-1,5,2-dithiazinyl, thianthrenyl,
pyranyl, isobenzofuranyl, chromenyl, xanthenyl, phenoxathinyl, 2H-pyrrolyl, isothiazolyl,
isothiazoledinyl, isoxazolyl, oxazolinyl, pyrazinyl, pyridazinyl, pyrimidinyl, pyrrolidinyl,
pyrrolinyl, indolizinyl, isoindolyl, 3H-indolyl, 1H-indazoly, purinyl, 4H-quinolizinyl,
isoquinolyl, quinolyl, phthalazinyl, naphthyridinyl, quinoxalinyl, quinazolinyl, cinnolinyl,
pteridinyl, 4aH-carbazolyl, carbazolyl, β-carbolinyl, phenanthridinyl, acridinyl,
pyrimidinyl, phenanthrolinyl, phenazinyl, phenothiazinyl, furazanyl, phenoxazinyl,
isochromanyl, chromanyl, imidazolidinyl, imidazolinyl, pyrazolidinyl, pyrazolinyl,
piperazinyl, indolinyl, isoindolinyl, quinuclidinyl, oxazolidinyl, benzotriazolyl,
benzisoxazolyl, oxindolyl, benzoxazolinyl, benzothienyl, benzothiazolyl and isatinoyl.
Other suitable heterocycles are exemplified in
Rigaudy et al., Nomenclature of Organic Chemistry, Sections A-H (1979) at pp. 53-76 and
Fletcher et al., Nomenclature of Organic Compounds, Adv. Chem. Ser. 126 (1974) at
pp 49-64.
[0027] The location on the heterocycle which provides the point of attachment(s) to the
rest of the compound of this invention is not critical, but those skilled in the art
will recognize substitution sites that are optimal for compound stability and/or ease
of synthesis. Carbon bonded heterocycles typically are bonded at position 2, 3, 4,
5, or 6 of a pyridine, position 3, 4, 5, or 6 of a pyridazine, position 2, 4, 5, or
6 of a pyrimidine, position 2, 3, 5, or 6 of a pyrazine, position 2, 3, 4, or 5 of
a furan, tetrahydrofuran, thiofuran, thiophene, pyrrole or tetrahydropyrrole, position
2, 4, or 5 of an oxazole, imidazole or thiazole, position 3, 4, or 5 of an isoxazole,
pyrazole, or isothiazole, position 2 or 3 of an aziridine, position 2, 3, or 4 of
an azetidine, position 2, 3, 4, 5, 6, 7, or 8 of a quinoline or position 1, 3, 4,
5, 6, 7, or 8 of an isoquinoline. Still more typically, carbon bonded heterocycles
include 2-pyridyl, 3-pyridyl, 4-pyridyl, 5-pyridyl, 6-pyridyl, 3-pyridazinyl, 4-pyridazinyl,
5-pyridazinyl, 6-pyridazinyl, 2-pyrimidinyl, 4-pyrimidinyl, 5-pyrimidinyl, 6-pyrimidinyl,
2-pyrazinyl, 3-pyrazinyl, 5-pyrazinyl, 6-pyrazinyl, 2-thiazolyl, 4-thiazolyl, or 5-thiazolyl.
[0028] Nitrogen containing heterocycles are bonded at nitrogen or a carbon, typically a
carbon atom. These include, for example, position 1 of aziridine, 1-aziridyl, 1-azetedyl,
1-pyrrolyl, 1-imidazolyl, 1-pyrazolyl, 1-piperidinyl, 2-pyrroline, 3-pyrroline, 2-imidazoline,
3-imidazoline, 9-carbazole, 4-morpholine, 9-alpha or β-carboline, 2-isoindole, 2-pyrazoline
and 3-pyrazoline, and by analogy, azetidine, pyrrole, pyrrolidine piperidine, piperazine,
indole, pyrazoline, indoline, imidazole, imidazolidine, 1H-indazole and isoindoline.
These and other N-containing heterocycles are well-known to those skilled in the art,
and their linkage sites are a matter of discretion.
[0029] Sulfur containing heterocycles are bonded through carbon or sulfur. They include
oxidized states such as -S(=O)(=O). In general, they are linked in the compounds of
formula (A) analogous to N-containing heterocycles.
[0030] "Alkoxy", "cycloalkoxy", "aryloxy", "arylalkyloxy", "oxy heterocycle", "thioalkyl",
"thiocycloalkyl", "arylthio", and "arylalkylthio" means substituents wherein an alkyl,
cycloalkyl, aryl, or arylalkyl, respectively, are attached to an oxygen atom or a
sulfur atom through a single bond, such as but not limited to methoxy, ethoxy, propoxy,
butoxy, thioethyl, thiomethyl, phenyloxy, benzyloxy, mercaptobenzyl and the like.
[0031] "Halogen" means any atom selected from the group consisting of fluorine, chlorine,
bromine and iodine.
[0032] Any substituent designation that is found in more than one site in a compound of
this invention shall be independently selected.
[0033] When a group is stated to be substituted with "one or more" of another group, this
typically means 1 to 3 substituents, ordinarily 1, 2 or 3 substitutents.
[0034] Those of skill in the art will also recognize that the compounds of the invention
may exist in many different protonation states, depending on, among other things,
the pH of their environment. While the structural formulae provided herein depict
the compounds in only one of several possible protonation states, it will be understood
that these structures are illustrative only, and that the invention is not limited
to any particular protonation state--any and all protonated forms of the compounds
are intended to fall within the scope of the invention.
Amino Acids
[0035] "Amino-acid" refers to a radical derived from a molecule having the chemical formula
H
2N-CHR
28-COOH, wherein R
28 is a side group of a naturally-occurring or known synthetic amino-acid. The amino
acids optionally are substituted with hydrocarbon typically of 1 to 8 carbons at one
or more carboxyl or amino groups, whether those groups are on the side chain or are
free after linking the amino acid to the remainder of the compound of this invention.
[0036] Optionally the amino acid residue is a hydrophobic residue such as mono-or di-alkyl
or aryl amino acids, cycloalkylamino acids and the like. Optionally, the residue does
not contain a sulfhydryl or guanidino substituent.
[0037] Naturally-occurring amino acid residues are those residues found naturally in plants,
animals or microbes, especially proteins thereof. Polypeptides most typically will
be substantially composed of such naturally-occurring amino acid residues. , These
amino acids are glycine, alanine, valine, leucine, isoleucine, serine, threonine,
cysteine, methionine, glutamic acid, aspartic acid, lysine, hydroxylysine, arginine,
histidine, phenylalanine, tyrosine, tryptophan, proline, asparagine, glutamine and
hydroxyproline. Additionally, unnatural amino acids, for example, valanine, phenylglycine
and homoarginine are also included.
[0038] Generally, only one of any site in the parental molecule is substituted with an amino
acid, although it is within the scope of this invention to introduce amino acids at
more than one permitted site. In general, the α-amino or α-carboxyl group of the amino
acid are bonded to the remainder of the molecule, i.e., carboxyl or amino groups in
the amino acid side chains generally are not used to form the amide bonds with the
parental compound (although these groups may need to be protected during synthesis
of the conjugates).
[0039] The amino acid esters optionally are hydrolyzable
in vivo or
in vitro under acidic (pH <3) or basic (pH >10) conditions. Optionally, they are substantially
stable in the gastrointestinal tract of humans but are hydrolyzed enzymatically in
blood or in intracellular environments.
[0040] R
28 usually is C
1-C
6 alkyl or C
1-C
6 alkyl substituted with amino, carboxyl, amide, carboxyl (as well as esters, as noted
above), hydroxyl, C
6-C
7 aryl, guanidinyl, imidazolyl, indolyl, sulfhydryl, sulfoxide, and/or alkylphosphate.
R
28 also is nitrogen to form a proline residue taken together with the amino acid α-
However, R
28 is generally the side group of the naturally-occurring amino acid disclosed above,
for example H, -CH
3, -CH(CH
3)
2, -CH
2-CH(CH
3)
2, -CHCH
3-CH
2-CH
3, -CH
2-C
6H
5, -CH
2CH
2-S-CH
3, -CH
2OH, -CH(OH)-CH
3, -CH
2-SH, -CH
2-C
6H
4OH, -CH
2-CO-NH
2, -CH
2-CH
2-CO-NH
2, -CH
2-COOH, -CH
2-CH
2-COOH, -(CH
2)
4-NH
2 and -(CH2)
3-NH-C(NH
2)-NH
2. R
28 also includes 1-guanidinoprop-3-yl, benzyl, 4-hydroxybenzyl, imidazol-4-yl, indol-3-yl,
methoxyphenyl and ethoxyphenyl.
Exemplary Embodiments
[0041] R
1 is generally aryl or aromatic heterocyle substituted with 1, 2 or 3 R
6 wherein R
6 is halogen, C
1-18 alkoxy; or C
1-18 haloalkyl. Typically, R
1 is phenyl substituted with 1, 2 or 3 halogens, usually fluoro.
[0042] Y generally is a single bond, O, C
1-6 alkylene, C
2-6 alkenylene, C
2-6 alkynylene or one of said groups containing 1 to 3, usually 1, heteroatoms selected
from O, S or NR
11. Examples include -O(CH
2)
1-5-, -(CH
2)
1-4-O-(CH
2)
1-4-, -S-(CH
2)
1-5-, -(CH
2)
1-4-S-(CH
2)
1-4-, -NR
11-(CH
2)
1-5-, -(CH
2)
1-4-NR
11-(CH
2)
1-4 or C
3-10 cycloalkylidene. Typically, Y is -OCH
2-, -CH
2O-, C
1-2 alkylene, C
2-3 alkenylene, C
2-3 alkynylene, O or a bond, but usually a bond.
[0043] In general, YR
1 is not any one of H, an unsubstituted C
3-10 cycloalkyl or C1-C6 alkyl. Typically YR
1 is halo or halomethyl-substituted (typically trihalomethyl) phenyl (and usually 1
to 2 substituents in ortho or meta).
[0044] X usually is alkylene, alkynylene or alkenylene, typically alkylene, or said hydrocarbons
having an intrachain heteroatom, typically O or S. Examples include-CH
2-, -CH(CH
3)-, -CH
2-CH
2-, -CH
2-CH
2-CH
2-, -CH
2-CH
2-CH
2-CH
2, -(CH
2)
2-4-O-(CH
2)
2-4-, -(CH
2)
2-4-S-(CH
2)
2-4-, -(CH
2)
2-4-NR
10-(CH
2)
2-4-, C
3-10 cycloalkylidene, C
2-6 alkenylene (such as -CH=CH-CH
2-) and C
2-6 alkynylene. Usually, X is methylene.
[0045] R
3 generally is aryl or a heterocycle, typically an aromatic heterocycle. The heterocycle
generally will contain 1, 2 or 3 N, S or O atoms in the ring, usually is linked to
X through a ring carbon atom and typically contains 4 to 6, usually 5, total ring
atoms. The R
3 aryl or heterocycle ordinarily is substituted with 1, 2 or 3, usually 1, R
17. R
3 optionally is not indolyl.
[0046] When R
3 is substituted with R
17 then R
17 typically is aryl or a heterocycle further substituted with 1 or more, usually 1,
2 or 3, R
19.
[0047] R
17 is M-Q in some embodiments of the invention. M is a ring. This means any cyclic organic
structure, whether carbocyclic or heterocyclic, and whether saturated, unsaturated
or aromatic or single or fused ring systems. M is chosen from rings that are structurally
stable in biological systems. In general, M is a aryl or aromatic heterocycle where
heterocycle is defined above.
[0048] Q is a spacer group, and is not critical. Typically it is not cyclic and contains
from no to 3 atoms, generally C, O or S, usually C or O.
[0049] R
17 typically is selected from the group consisting of C
3-10 cycloalkyl, C
3-10 cycloalkenyl, C
7-10 cycloalkynyl, halogen, aryl, aryloxy, arylthio, arylsulfoxide, arylsulfone, arylsulfonamide,
arylalkyl; arylalkyloxy (optionally an benzyloxy); arylalkylthio (optionally a benzylthio);
a heterocycle; C
1-18 hydroxyalkyl, but typically is an aryl or a heterocycle, and where each of said aryl,
aryloxy, arylthio, arylsulfoxide, arylsulfone, arylsulfonamide, arylalkyl, arylalkyloxy,
arylalkylthio, or heterocycle is optionally substituted with 1 or more R
19. R
17 generally is positioned distally to X. Optionally, R
17 is not C(O)R
18.
[0050] R
9 and R
18 typically are H, OH or alkyl. R
18 optionally is not NR
15R
16.
[0051] R
5 typically is H.
[0052] R
6 generally is halogen. Optionally, R
6 is not C(O)R
18.
[0053] R
7, R
8, R
10, R
11, R
13, R
14, R
15, R
16, R
20, R
21, R
23 and R
24 typically are independentl y H or C
1-18 alkyl.
[0054] R
12 and R
22 typically are independently OH or alkyl.
[0055] R
19 usually is H; C
1-18 alkyl; C
2-18 alkenyl; C
2-18 alkynyl; C
1-18 alkoxy; alkenyloxy; alkynyloxy; C
1-18 alkylthio; C
3-10 cycloalkyl; C
4-10 cycloalkenyl; C
4-10 cycloalkynyl; halogen; OH; CN; cyanoalkyl; NO
2; NR
20R
21; haloalkyl; haloalkyloxy; C(=O)R
18; C(=O)OR
18; OalkenylC(=O)OR
18; -OalkylC(=O)NR
20R
21; aryl; heterocycle; -OalkylOC(=O)R
18; C(=O)N(C
1-6 alkyl), N(H)S(O)(O)(C
1-6 alkyl); arylalkyloxy; aryloxy; arylalkyloxy; and arylalkyl; each of which is unsubstituted
or substituted with 1 or more =O; NR
20R
21; CN; alkoxy; heterocycle; haloalkyl- or alkyl-substituted heterocycle; heterocycle
linked to R
17 by alkyl; alkoxyalkoxy or halogen. R
18 as a subtituent in here is generally not H. R
19 typically is independently halogen, N(R
20 R
21), alkoxy or halo-substituted alkyl or alkoxy.
[0056] R
25 and R
26 usually are not present but if they are then typically they are cyclopentyl or cyclohexyl.
If the compound is substituted at R
25 or R
26, either R
2 or R
4 is selected from (=O), (=S), and (=NR
27), usually =O.
[0057] M typically is an aromatic ring, usually single or two fused rings, and containing
4 to 10 atoms. Usually, M is hydrocarbon, but also optionally comprises 1 to 3 N,
O and/or S heteroatoms.
[0058] Q usually is a hydrocarbon chain, typically a normal or secondary alkylene, which
optionally comprises at least one oxy or thio ester. Generally Q is 1 to 6 atoms,
usually 1 to 3. Q typically is not substituted with R
19, but if it is then typically it is substituted with one R
19. R
19 as substituted on Q usually is halogen, nitro or cyano. Substituents optionally are
designated with or without bonds. Regardless of bond indications, if a substituent
is polyvalent (based on its position in the structure referred to), then any and all
possible orientations of the substituent are intended.
[0059] Haloalkyl or haloalkyloxy typically are -CF3 or -OCF3.
[0060] The present invention provides a compound of the following the structure,

having antiviral activity as determined following the procedures taught throughout
the Specification, such as in Part B "Methodology For Determination Of Antiviral And
Cytostatic Activity" in the Examples Section. Preparation of this compound is taught
throughout the Specification, such as in Example 6.
[0061] The present invention further provides a compound of the following structure,

having antiviral activity as determined following the procedures taught throughout
the Specification, such as in Part B "Methodology For Determination Of Antiviral And
Cytostatic Activity" in the Examples Section. Preparation of this compound is taught
throughout the Specification, such as in Example 8A.
[0062] the compounds of the invention are employed for the treatment or prophylaxis of viral
infections such as yellow fever virus, Dengue virus, hepatitis B virus, hepatitis
G virus, Classical Swine Fever virus or the Border Disease Virus, but more particularly
flaviviral or picomaviral infections, in particular, HCV and BVDV.
[0063] The therapeutic compound(s) of this invention are administered to a subject mammal
(including a human) by any means well known in the art, i.e. orally, intranasally,
subcutaneously, intramuscularly, intradermally, intravenously, intraarterially, parenterally
or by catheterization. The therapeutically effective amount of the compound(s) is
a flaviviral or picornaviral growth inhibiting amount. More preferably, it is a flaviviral
or picornaviral replication inhibiting amount or a flaviviral or picornaviral enzyme
inhibiting amount of the compounds of formula (A). This is believed to correspond
to an amount which ensures a plasma level of between about 1µg/ml and 100 mg/ml, optionally
of 10 mg/ml. This optionally is achieved by administration of a dosage of in the range
of 0.001 mg to 60 mg, preferable 0.01 mg to 10 mg, preferably 0.1 mg to 1 mg per day
per kg bodyweight for humans. These are starting points for determining the optimal
dosage of the compounds of this invention. The actual amount will depend upon many
factors known to the artisan, including bioavailability of the compound, whether it
contains a prodrug functionality, its metabolism and distribution in the subject and
its potency, among others. It typically is necessary to determine the proper dosing
in the clinical setting, and this is well within the skill of the ordinary artisan.
The therapeutically effective amount of the compound(s) of this invention optionally
are divided into several subunits per day or are administered at daily or more than
one day intervals, depending upon the pathologic condition to be treated, the patient's
condition and the nature of the compound of this invention.
[0065] Suitable anti-viral agents for inclusion in combination antiviral compositions or
for coadministration in a course of therapy include, for instance, interferon alpha,
ribavirin, a compound falling within the scope of disclosure of
EP1162196,
WO 03/010141,
WO 03/007945 and
WO 03/010140, a compound falling within the scope of disclosure of
WO 00/204425, and other patents or patent applications within their patent families, in amounts
of 1 to 99.9% by weight compound of this invention, preferably from 1 to 99% by weight,
more preferably from 5 to 95% by weight as,can be readily determined by one skilled
in the art. Such co-administered agents need not be formulated in the same dosage
form as the compound of the invention. They optionally are simply administered to
the subject in the course of treatment along with a course of treatment with a compound
of formula (A).
[0066] The present invention further provides veterinary compositions comprising at least
one active ingredient as above defined together with a veterinary carrier therefore,
for example in the treatment of BVDV. Veterinary carriers are materials useful for
the purpose of administering the composition and are excipients which are otherwise
inert or acceptable in the veterinary art and are compatible with the compound of
this invention. These veterinary compositions may be administered orally, parenterally
or by any other desired route.
Salts
[0067] The term "pharmaceutically acceptable salts" as used herein means the therapeutically
active non-toxic salt forms formed by the compounds of formula (A). Such salts may
include those derived by combination of appropriate cations such as alkali and alkaline
earth metal ions or ammonium and quaternary amino ions with an acid anion moiety,
typically a carboxylic acid.
[0068] The compounds of the invention may bear multiple positive or negative charges. The
net charge of the compounds of the invention may be either positive or negative. Any
associated counter ions are typically dictated by the synthesis and/or isolation methods
by which the compounds are obtained. Typical counter ions include, but are not limited
to ammonium, sodium, potassium, lithium, halides, acetate, trifluoroacetate, etc.,
and mixtures thereof. It will be understood that the identity of any associated counter
ion is not a critical feature of the invention, and that the invention encompasses
the compounds in association with any type of counter ion. Moreover, as the compounds
can exist in a variety of different forms, the invention is intended to encompass
not only forms of the compounds that are in association with counter ions (e.g., dry
salts), but also forms that are not in association with counter ions (e.g., aqueous
or organic solutions).
[0069] Metal salts typically are prepared by reacting the metal hydroxide with a compound
of this invention. Examples of metal salts which are prepared in this way are salts
containing Li+, Na+, Ca+2 and Mg+2 and K+. A less soluble metal salt can be precipitated
from the solution of a more soluble salt by addition of the suitable metal compound.
In addition, salts may be formed from acid addition of certain organic and inorganic
acids to basic centers, typically amines, or to acidic groups. Examples of such appropriate
acids include, for instance, inorganic acids such as hydrohalogen acids, e.g. hydrochloric
or hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid and the like; or
organic acids such as, for example, acetic, propanoic, hydroxyacetic, benzoic, 2-hydroxypropanoic,
2-oxopropanoic, lactic, fumaric, tartaric, pyruvic, maleic, malonic, malic, salicylic
(i.e. 2-hydroxybenzoic), p-aminosalicylic, isethionic, lactobionic, succinic oxalic
and citric acids; organic sulfonic acids, such as methanesulfonic, ethanesulfonic,
benzenesulfonic and p-toluenesulfonic acids; and inorganic acids, such as hydrochloric,
sulfuric, phosphoric and sulfamic acids, C1-C6 alkylsulfonic, benzenesulfonic, p-toluenesulfonic,
cyclohexanesulfamic, and the lil:e. Preferred salts include mesylate and HCl.
[0070] The compounds of this invention include the solvates formed with the compounds of
formula (A) and their salts, such as for example hydrates, alcoholates and the like.
The compositions herein comprise compounds of the invention in their un-ionized, as
well as zwitterionic form, and combinations with stoichiometric amounts of water as
in hydrates.
[0071] Also included within the scope of this invention are the salts of the compounds of
formula (A) with one or more amino acids as described above. The amino acid typically
is one bearing a side chain with a basic or acidic group, e.g., lysine, arginine or
glutamic acid, or a neutral group such as glycine, serine, threonine, alanine, isoleucine,
or leucine.
[0072] Salts of acids or bases which are not physiologically acceptable may also find use,
for example, in the preparation or purification of a compound of formula (A). All
salts, whether or not derived form a physiologically acceptable acid or base, are
within the scope of the present invention.
Isomers
[0073] The term "isomers" as used herein means all possible isomeric forms, including tautomeric
and stereochemical forms, which the compounds of formula (A) may possess, but not
including position isomers. Typically, the structures shown herein exemplify only
one tautomeric or resonance form of the compounds, but the corresponding alternative
configurations are contemplated as well. Unless otherwise stated, the chemical designation
of compounds denotes the mixture of all possible stereochemically isomeric forms,
said mixtures containing all diastereomers and enantiomers (since the compounds of
formula (A) may have one or more chiral centers), as well as the stereochemically
pure or enriched isomers. More particularly, stereogenic centers may have either the
R- or S-configuration, and double or triple bonds optionally are in either the cis-
or trans-configuration.
[0074] Enriched isomeric forms of a compound of this invention are defined as a single isomer
substantially free of the compound's other enantiomers or diastereomers. In particular,
the term "stereoisomerically enriched" or "chirally enriched" relates to compounds
having a single stereoisomeric proportion of at least about 80% (i.e. at least 90%
of one isomer and at most 10% of the other possible isomers), preferably at least
90%, more preferably at least 94% and most preferably at least 97%. The terms "enantiomerically
pure" and "diastereomerically pure" contain undetectable levels of any other isomer.
[0075] Separation of stereoisomers is accomplished by standard methods known to those in
the art. One enantiomer of a compound of the invention can be separated substantially
free of its opposing enantiomer by a method such as formation of diastereomers using
optically active resolving agents ("
Stereochemistry of Carbon Compounds," (1962) by E. L. Eliel, McGraw Hill;
Lochmuller, C. H., (1975) J. Chromatogr., 113:(3) 2S3-302). Separation of isomers in a mixture can be accomplished by any suitable method,
including: (1) formation of ionic, diastereomeric salts with chiral compounds and
separation by fractional crystallization or other methods, (2) formation of diastereomeric
compounds with chiral derivatizing reagents, separation of the diastereomers, and
conversion to the pure enantiomers, or (3) enantiomers can be separated directly under
chiral conditions. Under method (1), diastereomeric salts can be formed by reaction
of enantiomerically pure chiral bases such as brucine, quinine, ephedrine, strychnine,
a-methyl-b-phenylethylamine (amphetamine), and the like with asymmetric compounds
bearing an acidic functionality, such as carboxylic acid and sulfonic acid.
[0076] The diastereomeric salts optionally are induced to separate by fractional crystallization
or ionic chromatography. For separation of the optical isomers of amino compounds,
addition of chiral carboxylic or sulfonic acids, such as camphorsulfonic acid, tartaric
acid, mandelic acid, or lactic acid can result in formation of the diastereomeric
salts. Alternatively, by method (2), the substrate to be resolved may be reacted with
one enantiomer of a chiral compound to form a diastereomeric pair (
Eliel, E. and Wilen, S. (1994). Stereochemistry of Organic Compounds, John Wiley &
Sons, Inc., p. 322). Diastereomeric compounds can be formed by reacting asymmetric compounds with enantiomerically
pure chiral derivatizing reagents, such as menthyl derivatives, followed by separation
of the diastereomers and hydrolysis to yield the free, enantiomerically enriched xanthene.
A method of determining optical purity involves making chiral esters, such as a menthyl
ester or Mosher ester, a-methoxy-a-(trifluoromethyl)phenyl acetate (
Jacob III. (1982) J. Org. Chem. 47:4165), of the racemic mixture, and analyzing the NMR spectrum for the presence of the
two atropisomeric diastereomers- Stable diastereomers can be separated and isolated
by normal- and reverse-phase chromatography following methods for separation of atropisomeric
naphthyl-isoquinolines (
Hoye, T., WO 96/15111). Under method (3), a racemic mixture of two asymmetric enantiomers is separated
by chromatography using a chiral stationary phase. Suitable chiral stationary phases
are, for example, polysaccharides, in particular cellulose or amylose derivatives.
Commercially available polysaccharide based chiral stationary phases are ChiralCeI
™CA, OA, OB5, OC5, OD, OF, OG, OJ and OK, and Chiralpak
™ AD, AS, OP(+) and OT(+). Appropriate eluents or mobile phases for use in combination
with said polysaccharide chiral stationary phases are hexane and the like, modified
with an alcohol such as ethanol, isopropanol and the like. ("
Chiral Liquid Chromatography" (1989) W. J. Lough, Ed. Chapman and Hall, New York;
Okamoto, (1990). "Optical resolution of dihydropytidine enantiomers by High-performance
liquid chromatography using phenylcarbamates of polysaccharides as a chiral stationary
phase", J. of Chromatogr. 513:375-378).
Formulations
[0077] The compounds of the invention optionally are formulated with conventional pharmaceutical
carriers and excipients, which will be selected in accord with ordinary practice.
Tablets will contain excipients, glidants, fillers, binders and the like. Aqueous
formulations are prepared in sterile form, and when intended for delivery by other
than oral administration generally will be isotonic. Formulations optionally contain
excipients such as those set forth in the "
handbook of Pharmaceutical Excipients" (1986) and include ascorbic acid and other antioxidants, chelating agents such as EDTA,
carbohydrates such as dextrin, hydroxyalkylcellulose, hydroxyalkylmethylcellulose,
stearic acid and the like.
[0078] Subsequently, the term "pharmaceutically acceptable carrier" as used herein means
any material or substance with which the active ingredient is formulated in order
to facilitate its application or dissemination to the locus to be treated, for instance
by dissolving, dispersing or diffusing the said composition, and/or to facilitate
its storage, transport or handling without impairing its effectiveness. The phamraceutically
acceptable carrier may be a solid or a liquid or a gas which has been compressed to
form a liquid, i.e. the compositions of this invention can suitably be used as concentrates,
emulsions, solutions, granulates, dusts, sprays, aerosols, suspensions, ointments,
creams, tablets, pellets or powders.
[0079] Suitable pharmaceutical carriers for use in the said pharmaceutical compositions
and their formulation are well known to those skilled in the art, and there is no
particular restriction to their selection within the present invention. They may also
include additives such as wetting agents, dispersing agents, stickers, adhesives,
emulsifying agents, solvents, coatings, antibacterial and antifungal agents (for example
phenol, sorbic acid, chlorobutanol), isotonic agents (such as sugars or sodium chloride)
and the like, provided the same are consistent with pharmaceutical practice, i.e.
carriers and additives which do not create permanent damage to mammals. The pharmaceutical
compositions of the present invention may be prepared in any known manner, for instance
by homogeneously mixing, coating and/or grinding the active ingredients, in a one-step
or multi-steps procedure, with the selected carrier material and, where appropriate,
the other additives such as surface-active agents, may also be prepared by micronisation,
for instance in view to obtain them in the form of microspheres usually having a diameter
of about 1 to 10 gm, namely for the manufacture of microcapsules for controlled or
sustained release of the active ingredients.
[0080] Suitable surface-active agents, also known as emulgent or emulsifier, to be used
in the pharmaceutical compositions of the present invention are non-ionic, cationic
and/or anionic materials having good emulsifying, dispersing and/or wetting properties.
Suitable anionic surfactants include both water-soluble soaps and water-soluble synthetic
surface-active agents. Suitable soaps are alkaline or alkaline-earth metal salts,
unsubstituted or substituted ammonium salts of higher fatty acids (C
10-C
22), e.g. the sodium or potassium salts of oleic or stearic acid, or of natural fatty
acid mixtures obtainable form coconut oil or tallow oil. Synthetic surfactants include
sodium or calcium salts of polyacrylic acids; fatty sulphonates and sulphates; sulphonated
benzimidazole derivatives and alkylarylsulphonates. Fatty sulphonates or sulphates
are usually in the form of alkaline or alkaline-earth metal salts, unsubstituted ammonium
salts or ammonium salts substituted with an alkyl or acyl radical having from 8 to
22 carbon atoms, e.g. the sodium or calcium salt of lignosulphonic acid or dodecylsulphonic
acid or a mixture of fatty alcohol sulphates obtained from natural fatty acids, alkaline
or alkaline-earth metal salts of sulphuric or sulphonic acid esters (such as sodium
lauryl sulphate) and sulphonic acids of fatty alcohol/ethylene oxide adducts. Suitable
sulphonated benzimidazole derivatives preferably contain 8 to 22 carbon atoms. Examples
of alkylarylsulphonates are the sodium, calcium or alcoholarnine salts of dodecylbenzene
sulphonic acid or dibutyl-naphthalenesulphonic acid or a naphthalene-sulphonic acid/formaldehyde
condensation product. Also suitable are the corresponding phosphates, e.g. salts of
phosphoric acid ester and an adduct of p-nonylphenol with ethylene and/or propylene
oxide, or phospholipids. Suitable phospholipids for this purpose are the natural (originating
from animal or plant cells) or synthetic phospholipids of the cephalin or lecithin
type such as e.g. phosphatidylethanolamine, phosphatidylserine, phosphatidylglycetine,
lysolecithin, cardiolipin, dioctanylphosphatidyl-choline, dipalmitoylphoshatidyl -choline
and their mixtures.
[0081] Suitable non-ionic surfactants include polyethoxylated and polypropoxylated derivatives
of alkylphenols, fatty alcohols, fatty acids, aliphatic amines or amides containing
at least 12 carbon atoms in the molecule, alkylarenesulphonates and dialkylsulphosuccinates,
such as polyglycol ether derivatives of aliphatic and cycloaliphatic alcohols, saturated
and unsaturated fatty acids and alhylphenols, said derivatives preferably containing
3 to 10 glycol ether groups and 8 to 20 carbon atoms in the (aliphatic) hydrocarbon
moiety and 6 to 18 carbon atoms in the alkyl moiety of the alkylphenol. Further suitable
non-ionic surfactants are water-soluble adducts of polyethylene oxide with poylypropylene
glycol, ethylenediaminopolypropylene glycol containing 1 to 10 carbon atoms in the
alkyl chain, which adducts contain 20 to 250 ethyleneglycol ether groups and/or 10
to 100 propyleneglycol ether groups. Such compounds usually contain from 1 to 5 ethyleneglycol
units per propyleneglycol unit. Representative examples of non-ionic surfactants are
nonylphenol - polyethoxyethanol, castor oil polyglycolic ethers, polypropylene/polyethylene
oxide adducts, tributylphenoxypolyethoxyethanol, polyethyleneglycol and octylphenoxypolyethoxyethanol.
Fatty acid esters of polyethylene sorbitan (such as polyoxyethylene sorbitan trioleate),
glycerol, sorbitan, sucrose and pentaerythritol are also suitable non-ionic surfactants.
[0082] Suitable cationic surfactants include quaternary ammonium salts, particularly halides,
having 4 hydrocarbon radicals optionally substituted with halo, phenyl, substituted
phenyl or hydroxy; for instance quaternary ammonium salts containing as N-substituent
at least one C8C22 alkyl radical (e.g. cetyl, lauryl, palmityl, myristyl, oleyl and
the like) and, as further substituents, unsubstituted or halogenated lower alkyl,
benzyl and/or hydroxy-lower alkyl radicals.
[0083] A more detailed description of surface-active agents suitable for this purpose may
be found for instance in "
McCutcheon's Detergents and Emulsifiers Annual" (MC Publishing Crop., Ridgewood, New
Jersey, 1981), "
Tensid-Taschenbucw', 2 d ed. (Hanser Verlag, Vienna, 1981) and "
Encyclopaedia of Surfactants, (Chemical Publishing Co., New York, 1981).
[0084] Compounds of the invention and their physiologically acceptable salts (hereafter
collectively referred to as the active ingredients) may be administered by any route
appropriate to the condition to be treated, suitable routes including oral, rectal,
nasal, topical (including ocular, buccal and sublingual), vaginal and parenteral (including
subcutaneous, intramuscular, intravenous, intradermal, intrathecal and epidural).
The preferred route of administration may vary with for example the condition of the
recipient.
[0085] While it is possible for the active ingredients to be administered alone it is preferable
to present them as pharmaceutical formulations. The formulations, both for veterinary
and for human use, of the present invention comprise at least one active ingredient,
as above described, together with one or more pharmaceutically acceptable carriers
therefore and optionally other therapeutic ingredients. The carrier(s) optimally are
"acceptable" in the sense of being compatible with the other ingredients of the formulation
and not deleterious to the recipient thereof. The formulations include those suitable
for oral, rectal, nasal, topical (including buccal and sublingual), vaginal or parenteral
(including subcutaneous, intramuscular, intravenous, intradermal, intrathecal and
epidural) administration. The formulations may conveniently be presented in unit dosage
form and may be prepared by any of the methods well known in the art of pharmacy.
Such methods include the step of bringing into association the active ingredient with
the carrier which constitutes one or more accessory ingredients. In general the formulations
are prepared by uniformly and intimately bringing into association the active ingredient
with liquid carriers or finely divided solid carriers or both, and then, if necessary,
shaping the product.
[0086] Formulations of the present invention suitable for oral administration may be presented
as discrete units such as capsules, cachets or tablets each containing a predetermined
amount of the active ingredient; as a powder or granules; as solution or a suspension
in an aqueous liquid or a non-aqueous liquid; or as an oil-in-water liquid emulsion
or a water-in-oil liquid emulsion. The active ingredient may also be presented as
a bolus, electuary or paste.
[0087] A tablet may be made by compression or molding, optionally with one or more accessory
ingredients. Compressed tablets may be prepared by compressing in a suitable machine
the active ingredient in a free-flowing form such as a powder or granules, optionally
mixed with a binder, lubricant, inert diluent, preservative, surface active or dispersing
agent. Molded tablets may be made by molding in a suitable machine a mixture of the
powdered compound moistened with an inert liquid diluent. The tablets may optionally
be coated or scored and may be formulated so as to provide slow or controlled release
of the active ingredient therein. For infections of the eye or other external tissues
e.g. mouth and skin, the formulations are optionally applied as a topical ointment
or cream containing the active ingredient(s) in an amount of, for example, 0.075 to
20% w/w (including active ingredient(s) in a range between 0.1% and 20% in increments
of 0.1% w/w such as 0.6% w/w, 0.7% w/w, etc), preferably 0.2 to 15% w/w and most preferably
0.5 to 10% w/w. When formulated in an ointment, the active ingredients may be employed
with either a paraffinic or a water-miscible ointment base. Alternatively, the active
ingredients may be formulated in a cream with an oil-in-water cream base. If desired,
the aqueous phase of the cream base may include, for example, at least 30% w/w of
a polyhydric alcohol, i.e. an alcohol having two or more hydroxyl groups such as propylene
glycol, butane 1,3-diol, mannitol, sorbitol, glycerol and polyethylene glycol (including
PEG400) and mixtures thereof. The topical formulations may desirably include a compound
which enhances absorption or penetration of the active ingredient through the skin
or other affected areas. Examples of such dermal penetration enhancers include dimethylsulfoxide
and related analogs.
[0088] The oily phase of the emulsions of this invention may be constituted from known ingredients
in a known manner. While the phase may comprise merely an emulsifier (otherwise known
as an emulgent), it desirably comprises a mixture of at least one emulsifier with
a fat or an oil or with both a fat and an oil. Optionally, a hydrophilic emulsifier
is included together with a lipophilic emulsifier which acts as a stabilizer. It is
also preferred to include both an oil and a fat. Together, the emulsifier(s) with
or without stabilizer(s) make up the so-called emulsifying wax, and the wax together
with the oil and fat make up the so-called emulsifying ointment base which forms the
oily dispersed phase of the cream formulations.
[0089] The choice of suitable oils or fats for the formulation is based on achieving the
desired cosmetic properties, since the solubility of the active compound in most oils
likely to be used in pharmaceutical emulsion formulations is very low. Thus the cream
should optionally be a non-greasy, non-staining and washable product with suitable
consistency to avoid leakage from tubes or other containers. Straight or branched
chain, mono- or dibasic alkyl esters such as di-isoadipate, isocetyl stearate, propylene
glycol diester of coconut fatty acids, isopropyl myristate, decyl oleate, isopropyl
palmitate, butyl stearate, 2-ethylhexyl palmitate or a blend of branched chain esters
known as Crodamol CAP may be used, the last three being preferred esters. These may
be used alone or in combination depending on the properties required. Alternatively,
high melting point lipids such as white soft paraffin and/or liquid paraffin or other
mineral oils can be used.
[0090] Formulations suitable for topical administration to the eye also include eye drops
wherein the active ingredient is dissolved or suspended in a suitable carrier, especially
an aqueous solvent for the active ingredient. The active ingredient is optionally
present in such formulations in a concentration of 0.5 to 20%, advantageously 0.5
to 10% particularly about 1.5% w/w. Formulations suitable for topical administration
in the mouth include lozenges comprising the active ingredient in a flavored basis,
usually sucrose and acacia or tragacanth; pastilles comprising the active ingredient
in an inert basis such as gelatin and glycerin, or sucrose and acacia; and mouthwashes
comprising the active ingredient in a suitable liquid carrier.
[0091] Formulations for rectal administration may be presented as a suppository with a suitable
base comprising for example cocoa butter or a salicylate. Formulations suitable for
nasal administration wherein the carrier is a solid include a coarse powder having
a particle size for example in the range 20 to 500 microns (including particle sizes
in a range between 20 and 500 microns in increments of 5 microns such as 30 microns,
35 microns, etc), which is administered in the manner in which snuff is taken, i.e.
by rapid inhalation through the nasal passage from a container of the powder held
close up to the nose. Suitable formulations wherein the carrier is a liquid, for administration
as for example a nasal spray or as nasal drops, include aqueous or oily solutions
of the active ingredient. Formulations suitable for aerosol administration may be
prepared according to conventional methods and may be delivered with other therapeutic
agents.
[0092] Formulations suitable for vaginal administration may be presented as pessaries, tampons,
creams, gels, pastes, foams or spray formulations containing in addition to the active
ingredient such carriers as are know in the art to be appropriate.
[0093] Formulations suitable for parenteral administration include aqueous and non-aqueous
sterile injection solutions which may contain anti-oxidants, buffers, bacteriostats
and solutes which render the formulation isotonic with the blood of the intended recipient;
and aqueous and non-aqueous sterile suspensions which may include suspending agents
and thickening agents. The formulations may be presented in unit-dose or multi-dose
containers, for example sealed ampoules and vials, and may be stored in a freeze-dried
(lyophilized) condition requiring only the addition of the sterile liquid carrier,
for example water for injections, immediately prior to use. Extemporaneous injection
solutions and suspensions may be prepared from sterile powders, granules and tablets
of the kind previously described.
[0094] Preferred unit dosage formulations are those containing a daily dose or unit daily
sub-dose, as herein above recited, or an appropriate fraction thereof, of an active
ingredient.
[0095] It should be understood that in addition to the ingredients particularly mentioned
above the formulations of this invention may include other agents conventional in
the art having regard to the type of formulation in question, for example those suitable
for oral administration may include flavoring agents.
[0096] Compounds of the invention can be used to provide controlled release pharmaceutical
formulations containing as active ingredient one or more compounds of the invention
("controlled release formulations") in which the release of the active ingredient
can be controlled and regulated to allow less frequency dosing or to improve the pharmacokinetic
or toxicity profile of a given invention compound. Controlled release formulations
adapted for oral administration in which discrete units comprising one or more compounds
of the invention can be prepared according to conventional methods.
[0097] Additional ingredients may be included in order to control the duration of action
of the active ingredient in the composition. Control release compositions may thus
be achieved by selecting appropriate polymer carriers such as for example polyesters,
polyamino acids, polyvinyl pyrrolidone, ethylene-vinyl acetate copolymers, methylcellulose,
carboxymethylcellulose, protamine sulfate and the like. The rate of drug release and
duration of action may also be controlled by incorporating the active ingredient into
particles, e.g. microcapsules, of a polymeric substance such as hydrogels, polylactic
acid, hydroxymethylcellulose, polymethyl methacrylate and the other above-described
polymers. Such methods include colloid drug delivery systems like liposomes, microspheres,
microemulsions, nanoparticles, nanocapsules and so on. Depending on the route of administration,
the pharmaceutical composition may require protective coatings. Pharmaceutical forms
suitable for injectionable use include sterile aqueous solutions or dispersions and
sterile powders for the extemporaneous preparation thereof. Typical carriers for this
purpose therefore include biocompatible aqueous buffers, ethanol, glycerol, propylene
glycol, polyethylene glycol and the like and mixtures thereof.
[0098] In view of the fact that, when several active ingredients are used in combination,
they do not necessarily bring out their joint therapeutic effect directly at the same
time in the mammal to be treated, the corresponding composition may also be in the
form of a medical kit or package containing the two ingredients in separate but adjacent
repositories or compartments. In the latter context, each active ingredient may therefore
be formulated in a way suitable for an administration route different from that of
the other ingredient, e.g. one of them may be in the form of an oral or parenteral
formulation whereas the other is in the form of an ampoule for intravenous injection
or an aerosol.
Synthetic Methods
[0099] The compounds of formula (A) are prepared using a series of chemical reactions well
known to those skilled in the art, altogether making up the process for preparing
said compounds and exemplified further. The processes described further are only meant
as examples and by no means are meant to limit the scope of the present invention.
[0100] The invention also relates to methods of making the compositions of the invention.
The compositions are prepared by any of the applicable techniques of organic synthesis.
Many such techniques are well known in the art. However, many of the known techniques
are elaborated in "
Compendium of Organic Synthetic Methods" (John Wiley & Sons, New York), Vol. 1, Ian
T. Harrison and Shuyen Harrison, 1971;
Vol. 2, Ian T. Harrison and Shuyen Harrison, 1974;
Vol. 3, Louis S. Hegedus and Leroy Wade, 1977;
Vol. 4, Leroy G. Wade, Jr., 1980;
Vol. 5, Leroy G. Wade, Jr., 1984; and
Vol. 6, Michael B. Smith; as well as
March, J., "Advanced Organic Chemistry, Third Edition", (John Wiley & Sons, New York,
1955), "
Comprehensive Organic Synthesis. Selectivity, Strategy & Efficiency in Modem Organic
Chemistry. In 9 Volumes", Barry M. Trost, Editor-in-Chief (Pergamon Press, New York,
1993 printing).
[0101] Exemplary methods for the preparation of the compositions of the invention are provided
below. These methods are intended to illustrate the nature of such preparations, and
are not intended to limit the scope of applicable methods.
[0102] Generally, the reaction conditions such as temperature, reaction time, solvents,
workup procedures, and the like, will be those common in the art for the particular
reaction to be performed. The cited reference material, together with material cited
therein, contains detailed descriptions of such conditions. Typically the temperatures
will be -100°C to 200°C, solvents will be aprotic or protic, and reaction times will
be 10 seconds to 10 days. Workup typically consists of quenching any unreacted reagents
followed by partition between a water/organic layer system (extraction) and separating
the layer containing the product.
[0103] Oxidation and reduction reactions are typically carried out at temperatures near
room temperature (about 20°C), although for metal hydride reductions frequently the
temperature is reduced to 0°C to -100°C, solvents are typically aprotic for reductions
and may be either protic or aprotic for oxidations. Reaction times are adjusted to
achieve desired conversions.
[0104] Condensation reactions are typically carried out at temperatures near room temperature,
although for non-equilibrating, kinetically controlled condensations reduced temperatures
(0°C to -100°C) are also common. Solvents can be either protic (common in equilibrating
reactions) or aprotic (common in kinetically controlled reactions).
[0105] Standard synthetic techniques such as azeotropic removal of reaction byproducts and
use of anhydrous reaction conditions (e.g. inert gas environments) are common in the
art and will be applied when applicable.
[0106] General aspects of these exemplary methods are described below. Each of the products
of the following processes is optionally separated, isolated, and/or purified prior
to its use in subsecquent processes.
[0107] The terms "treated", "treating", "treatment", and the like, mean contacting, mixing,
reacting, allowing to react, bringing into contact, and other terms common in the
art for indicating that one or more chemical entities is treated in such a manner
as to convert it to one or more other chemical entities. This means that "treating
compound one with compound two" is synonymous with "allowing compound one to react
with compound two", "contacting compound one with compound two", "reacting compound
one with compound two", and other expressions common in the art of organic synthesis
for reasonably indicating that compound one was "treated", "reacted", "allowed to
react", etc., with compound two.
[0108] "Treating" indicates the reasonable and usual manner in which organic chemicals are
allowed to react. Normal concentrations (0.01M to 10M, typically 0.1M to 1M), temperatures
(-100°C to 250°C, typically -78°C to 150°C, more typically -78°C to 100°C, still more
typically 0°C to 100°C), reaction vessels (typically glass, plastic, metal), solvents,
pressures, atmospheres (typically air for oxygen and water insensitive reactions or
nitrogen or argon for oxygen or water sensitive), etc., are intended unless otherwise
indicated. The knowledge of similar reactions known in the art of organic synthesis
is used in selecting the conditions and apparatus for "treating" in a given process.
In particular, one of ordinary skill in the art of organic sysnthesis selects conditions
and apparatus reasonably expected to successfully carry out the chemical reactions
of the described processes based on the knowledge in the art.
[0109] Modification of the exemplified schemes and examples leads to various analogs of
the specific exemplary materials produced above. The above citations describing suitable
methods of organic synthesis are applicable to such modifications.
[0110] In the exemplary schemes it may be advantageous to separate reaction products from
one another and/or from starting materials. The desired products of each step or series
of steps is separated and/or purified (hereinafter separated) to the desired degree
of homogeneity by the techniques common in the art. Typically such separations involve
multiphase extraction; crystallization from a solvent or solvent mixture, distillation,
sublimation, or chromatography. Chromatography can involve any number of methods including,
for example, size exclusion or ion exchange chromatography, High, medium, or low pressure
liquid chromatography, small scale and preparative thin or thick layer chromatography,
as well as techniques of small scale thin layer and flash chromatography.
[0111] Another class of separation methods involves treatment of a mixture with a reagent
selected to bind to or render otherwise separable a desired product, unreacted starting
material, reaction by product, or the like. Such reagents include adsorbents or absorbents
such as activated carbon, molecular sieves, ion exchange media, or the like. Alternatively,
the reagents can be acids in the case of a basic material, bases in the case of an
acidic material, binding reagents such as antibodies, binding proteins, selective
chelators such as crown ethers, liquid/liquid ion extraction reagents (LIX), or the
like.
[0112] Selection of appropriate methods of separation depends on the nature of the materials
involved. For example, boiling point, and molecular weight in distillation and sublimation,
presence or absence of polar functional groups in chromatography, stability of materials
in acidic and basic media in multiphase extraction, and the like. One skilled in the
art will apply techniques most likely to achieve the desired separation.
[0113] Suitable methods for making the compounds of this invention also are found in
WO 2004/005286, in particular schemes 1 - 13 therein.
[0114] analogous compounds may be synthesized in the same fashion as in the foregoing schemes
by varying the starting materials, intermediates, solvents and conditions as will
be known by those skilled in the art.
EXAMPLES
PART A
Compound synthesis
EXAMPLE 1
2-(2,3-difluorophenyl)-3H-imidazo[4,5-c]pyridine
[0115]

[0116] Phosphorous pentoxide (24.56g) was dissolved in methanesulfonic acid (165.8mL) at
50°C with stirring. To the solution, 3,4-diaminopyridine (12.3g, 0.11 moles) and 2,3-difluorobenzoic
acid (19.4g, 0.12moles) were added. The reaction mixture was heated to 190°C for 3
hours. The reaction was done three times. The reaction mixtures was cooled to 50°C
and poured into ice with stirring. At this stage, all three batches were combined.
The reaction mixture was neutralized by the addition of NaOH with stirring until the
pH is 8. Solid material precipitated out of solution, was collected by filtration
and air-dried. The final product was re-crystallized from ethanol/water twice to yield
36g of 2-(2,3-difluorophenyl)-3H-imidazo[4,5-c]pyridine. 1H 300Mhz (CD
3OD) sigma 7.3-7.42 (m, 1p); 7.43-7.58 (m, 1p); 7.70 (d, 1p); 8.0 (m, 1p); 8.34 (d,
1p); and 8.95 (s, 1p). LC/MS data M/z = 232.
[0117] Following the above taught procedure and substituting 2-fluorobenzoic acid in place
of 2,3-difluorobenzoic acid, the compound 2-(2-fluorophenyl)-3H-imidazo[4,5-c]pyridine
can be prepared.
EXAMPLE 2
5-((3-(4-chlorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl) -5H-imidazo[4,5-c]pyridine
[0118]

[0119] To a suspension of 2-(2-fluorophenyl)-3H-imidazo[4,5-c]pyridine (11.0g, 50.0moles)
in DMF was added a 10% (w/v) solution of aqueous NaOH. To this solution, 5-(chloromethyl)-3-(4-chlorophenyl)isoxazole
(13.68g, 60.0mmoles) dissolved in DMF was added. The reaction mixture was stirred
at room temperature and monitored every half hour by LCMS. The reaction was stopped
at 4 hours, after LCMS showed no progress between at 2 hour and 4 hour monitor points.
The reaction product was triturated with first with water and then with EtoAc (3x).
The material was crystallized by dissolving the material in MeOH with heat, followed
by precipitation with water. This crystallization process was then repeated yielding
5-((3-(4-chlorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
(15.385g, 38mole) as white crystal at a yield of 74%. 1H 300Mhz (d
6-DMSO) sigma 6.02 (s, 2p); 7.13 (s, 1p); 7.26-7.35 (m, 2p); 7.43-7.52 (m, 1p); 7.56
(d, 2p); 7.84 (d, 1); 7.89 (d, 2p); 8.24 (d, 1); 8.28-8.36 (m, 1p); and 9.19 (s, 1p).
LCMS data M/Z = 405.31
EXAMPLE 5
5-((3-(4-chlorophenyl)isoxazol-5-yl)methyl)-2-(2,3-difluorophenyl)-5H-imidazo[4,5-c]pyridine
[0120]

[0121] To a solution of azabenzimidazole (10g, 43.3mmole) in DMF was added 10% (w/v) aqueous
NaOH followed by a solution of 5-(chloromethyl)-3-(4-chlorophenyl)-isoxazole (11.8g,
51.9mmole) in DMF. The reaction mixture was stirred at room temperature for 7 hours,
and then concentrated. The solid material was treated with EtOAc/H
2O, and collected by filtering. The solid material was then titrated with H
2O and EtoAc, and air-dried. The solid was further purified by re-crystallization from
MeOH to obtain 5-((3-(4-chlorophenyl)isoxazol-5-yl)methyl)-2-(2,3-difluorophenyl)-5H-imidazo[4,5-c]pyridine
(8.5g, 20.1mmole) at 46.6% yield. 1H 300Mhz (DMSO-d6) sigma 6.03 (s, 2p); 7.12 (s,
1p); 7.25-7.35 (m, 1p); 7.44-7.53 (m, 1p); 7.55 (d, 2p); 7.88 (d, 3p); 8.11-8.18 (m,
1p); 8.24-8.29 (dd, 1p); and 9.23 (s, 1p). LC/MS data M/z = 423.34, 425.22
EXAMPLE 6
5-((3-(2, 4-trifluoromethyphenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
[0122]

2,4-(bis-trifluoromethyl)benzaldoxime
[0123] To aromatic aldehyde (0.021 mol) suspended in EtOH/H
2O (1:2, 230 mL, 0.09 M) was added hydroxylamine hydrochloride (1.58 g, 0.023 mol)
and cooled to 4°C. To this solution was added aqueous NaOH 50% w/w (4.13 mL, 0.052
mol) dropwise. After stirring for 1.5 h at room temperature, the reaction mixture
was acidified with 2N aqueous HCl and extracted with CH
2Cl
2 (3 × 50 mL). The organic solution was washed with saturated aqueous NaCl and dried
over sodium sulfate. Removal of solvent gave crude oxime (5.3 g, quant.) that was
used directly in the next step.
2,4-(bis-trifluoromethyl)phenyl chloromethyl isoxazole
[0124] 2,4-(bis-trifluoromethyl)benzaldoxime (9.75 g, 0.038 mol) was suspended in CH
2Cl
2 (45 mL, 0.85 M) and cooled to 4°C. Propargyl chloride (2.72 mL, 0.038 mol) was added
to the reaction solution followed by dropwise addition of NaOCl (10-13 % free chlorine,
37.6 mL, 0.061 mol). The reaction mixture was stirred at 4°C for 15 min then heated
to reflux for 3 h. After cooling to room temperature, the reaction was partitioned
between CH
2Cl
2 and H
2O. The organic layer was separated, washed with saturated aqueous NaCl, and dried
over sodium sulfate. After removal of solvent, the crude product chloromethylisoxazole
was purified by column chromatography on silica (10% CH
2Cl
2/hexanes)(6.5 g ,0.020 mol).
5-((3-(2, 4-trifluoromethyphenyl)isoxazol-5-yl]methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
[0125] To imidazopyridine (14.28 g, 0.067 mol) suspended in DMF (40 mL) was added aqueous
NaOH 10% w/w (32.2 mL, 0.080 mol) dropwise followed by addition of the chloromethyl
isoxazole from the previous step (26.3 g, 0.080 mol) in DMF (16 mL). After stirring
for 12 h at room temperature, solvents were evaporated to give crude product as a
tan solid. The crude solid was triturated with H
2O (7×) and crystallized (2×) from MeOH/H
2O (2:1) to provide pure title product.
NMR; 300Mhz D
6MSO
Chemical shift, multiplicity, # of protons:
6.1, s, 2
7.0, s, 1
7.3, t, 2
7.4-7.5, m, 1
7.8-7.9, d, 1
7.9-8.0, d, 1
8.2-8.4, m, 4
9.2, s, 1
EXAMPLE 7
5-((3-(4-trifluoromethy-2-fluorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
[0126]
Compound |
MW |
Amount |
Moles |
Equivalents |
A |
207.13 |
9.3 g |
0.044 |
1 |
NaOCl (10 % free Cl) |
74.44 |
43.0 mL |
0.44 |
1.6 |
Propargyl chloride |
74.51 |
3.14 mL |
0.044 |
1 |
Dichloromethane |
|
48.7 mL |
|
|
[0127] "A" was suspended in dichloromethane at 0°C and NaOCl was added at 0°C with vigorous
stirring, followed by propargyl chloride. Reaction stirred at 0°C for 5 min and then
heated to reflux for 2 h. It was then cooled to room temperature, washed with water,
dried over sodium sulfate and concentrated in vacuo to obtain a yellow solid. It was
purified on the combiflash on a silica gel column, eluting with 3-50% ethyl acetate-hexanes.
4.5 g of shiny white solid obtained.
Compound |
MW |
Amount |
mMoles |
Equivalents |
A |
279.62 |
2.0 g |
7.6 |
1.2 |
B |
213.21 |
1.373 g |
6.4 |
1 |
10% w/v aq NaOH |
|
2.26 mL |
|
|
DMF |
|
13.73 mL + 6.56 mL |
|
|
[0128] "B" was suspended in 13.73 mL DMF and 10% (w/v) aq. NaOH was added to it. "A" was
dissolved in 6.56 mL DMF and this solution was added to the above with stirring. The
reaction was stirred at room temperature for 5 hours. DMF was removed by concentrating
in vacuo and the solid obtained was triturated with water two times and then with
ethyl acetate. The solid thus obtained was recrystallized from methanol-water to obtain
533mg of the desired compound.
[0129] NMR (DMSO) Data:
Chemical shift, multiplicity, # of protons:
6.14, s, 2
7.18, d, 1
7.28-7.36, m, 2
7.44-7.54, m, 1
7.70-7.76, d, 1
7.86-7.90, d, 1
7.90-7.96, d, 1
8.08-8.16, t, 1
8.28-8.36, t, 2
9.24, s, 1
EXAMPLE 8A
5-((3-(2-trifluoromethy-4-fluorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
[0130]

[0131] To a solution of azabenzimidazole (12.7g, 59.6mmole) in DMF (120mL) was added 10%
(w/v) aqueous NaOH (30.51mL, 76.6mmole) followed by a solution of 5-(chloromethyl)-3-(2-triflouromethyl-4-flourophenyl)-isoxazole
(21.3g, 76.6mmole) in DMF (60mL). The reaction mixture was stirred at room temperature
for 18 hours, and then concentrated. The material was precipitated from MeOH/H
2O, and collected by filtering. The solid material was recrystallized from EtoAc/hexanes
to obtain 5-((3-(2-trifluoromethy-4-fluorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
in 69% yield.
NMR Data
300Mhz D
6MSO
Chemical shift, multiplicity, # of protons:
6.15, s, 2
6.91, s, 1
7.3, t, 2
7.42-7.52, m, 1
7.65-7.9, m, 2
7.84-7.9, m, 2
8.22-8.45, m, 2
9.19, s, 1
EXAMPLE 8B
Salts of 5-((3-(2-trifluoromethy-4-fluorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
Methanesulfonic acid salt
[0132] 5-((3-(2-trifluoromethy-4-fluorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
free base (200 mg) was slurried in 2.0 mL acetone. Methanesulfonic acid (42.6 mg)
was added and the mixture was warmed to ∼60°C. Water was added in small increments
until a solution was formed (110 µL required). The solution was cooled to ambient
temperature and stirred overnight. The slurry was cooled in an ice bath before being
filtered and washed with acetone. The solid obtained was dried at 40°C to give 149
mg of the desired salt. DSC endotherm 213.1°C: NMR was consistent with the desired
structure.
HCl salt
[0133] 5-((3-(2-trifluoromethy-4-fluorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
free base (200 mg) was slurried in 2.0 mL acetone. Concentrated hydrochloric acid
(46 mg) was added and the mixture was warmed to ∼60°C. Water was added to the thick
slurry in small increments until a solution was formed (100 µL required). The solution
was cooled to ambient temperature and stirred overnight. The slurry was cooled in
an ice bath before being filtered and washed with acetone. The solid obtained was
dried at 40°C to give 80 mg of the desired salt. DSC endotherm 241.5°C. NMR consistent
with the desired structure.
EXAMPLE 8B
Formulation of 5-((3-(2-trifluoromethy-4-fluorophenyl)isoxazol-5-yl)methyl)-2-(2-fluorophenyl)-5H-imidazo[4,5-c]pyridine
salts
[0134] Either salt of Example 78 was mixed 1:1 by weight in dry pregelatinized starch. 100
mg of the mixture was loaded into a hard gel capsule.
[0135] Additional compounds of this invention were made by the methods of procedures A,
and D.
Procedure A; Alkylation
[0136]

[0137] For compounds prepared in an array format, 100um of the scaffold (in this case 2-(2,3-Difluoro-phenyl)-3H-imidazo[4,5-c]pyridine)
was used for each reaction. The total amount of 2-(2,3-Difluoro-phenyl)-3H-imidazo[4,5-c]pyridine
was dissolved in enough DMF to give 500ul/reaction. To each solution was added 60
µL of 10%(w/v)NaOH/H
2O. The alkylating agents were dissolved in DMF at a concentration 480 µmole/mL and
250 µL of these solutions were added to the respective reaction. Each reaction was
then heated to 110°C for 1 min using microwave irradiation. After cooling, the reactions
were filtered through a 0.45um filter. Each compound was then purified by mass based
fractionation on a C-18 reverse phase column using 0.1%TEA/ H
2O and 0.1%TFA/Acetonitrile as the eluting solvents. Each compound was identified by
its mass spectrum and purity was determined by UV absorbance at 254mn. The HPLC fractions
were concentrated by centrifugal evaporation and weighed to determine quantity collected.
Procedure D
General procedure for alkylation
[0138] To imidazopyridine suspended in DMF was added aqueous NaOH 10% w/w (1.2 equiv.) dropwise
followed by addition of chloromethyl isoxazole (1.2 equiv.) in DMF. After stirring
for 12 h at room temperature, solvents were evaporated to give crude product as a
tan solid. The crude solid was triturated with H
2O and crystallized from MeOH/H
2O (2:1) to provide pure final product.
EXAMPLE 374
Isoxazole Analogues
[0140]

[0141] To a stirred solution of 4-ethoxy-benzaldehyde (3.000 g) in 50% ethanol (7 mL) ice
(10 g) and hydroxylamine hydrochloride (2.100 g) were added, followed by 30% aqueous
sodium hydroxide solution (3.5 mL). After completion of the reaction (1 h) hydrochloric
acid was added to adjust pH to I and the suspension was cooled on an ice bath and
filtered. The crude oxime can be used for the next step without purification. Alternatively,
it can be recrystallized from a mixture of diisopropyl ether and ethyl acetate. Yield:
71 %.
[0142] To a solution ofpropargyl chloride (655 mg, 1 equ.) and triethylamine (35 mg, 0.1
equ.) in dichloromethane (9.5 mL) were subsequently added with cooling 10% aqueous
sodium hypochlorite solution (9.5 mL, 1.5 equ.) and then a solution of the oxime (1.40
g, ∼1.3 M in dichloromethane) over a period of 15 minutes and stirring was continued
for an additional hour. The reaction was monitored by TLC (silicagel, eluent: 5 %
MeOH in dichloromethane). After completion the reaction mixture was extracted 3 times
with 30 mL dichloromethane. The combined organic phases were dried over anhydrous
sodium sulphate and evaporated under reduced pressure. The crude 5-(chloromethyl)-3-(4-ethoxyphenyl)-isoxazole
was purified by column chromatography (silicagel, ethyl acetate / petroleum ether
= 1:9). Yield: 1.1 g.
[0143] A mixture of 3,4-diaminopyridine (2.00 g), 2,3-difluorobenzoic acid (1 equivalent)
and polyphosphoric acid (50 g) was heated at 180°C for 4 h with stirring. Then the
mixture was cooled to ambient temperature and poured into ice/water. The resulting
mixture was neutralized by addition of solid NaOH. The crude 2-(2,3-difluorophenyl)-1(3)
H-imidazo[4,5-c]pyridine was collected by filtration, washed with water and dried.
It was used in the next step without further purification. Yield: 88 %.
[0144] 2-(2,3-Difluorophenyl)-1(3)
H-imidazo[4,5-c]pyridine (0.500 g) was dissolved in dry DMF (5 mL) and the resulting
solution was cooled to 0°C. Aqueous 50% sodium hydroxide (1.5 equivalents) was added
and the mixture was stirred for 15 min. Then 5-(chloromethyl)-3-(4-ethoxyphenyl)-isoxazole
(1.2 equivalents) was added and the resulting mixture was stirred for 24 h at room
temperature. Finally, water (50 mL) was added, the precipitate was collected by filtration
and dried to give the crude product.
Recrystallized from ethyl acetate; colorless crystals; yield: 35%
[0145] 1H NMR (200 MHz, DMSO-d
6) δ 9.24 (d, 1H, H4, J=1.2 Hz), 8.28 (dd, 1H, H6, J=6.6, 1.2 Hz), 8.15 (m, 1H, phenyl-H),
7.89 (d, 1H, H7, J=6.6 Hz), 7.77 (AA'BB', 2H, benzyl-H), 7.49 (m, 1H, phenyl-H), 7.31
(m, 1H, phenyl-H), 7.07-7.00 (m, 3H, arom. H), 6.02 (s, 2H, CH
2), 4.06 (q, 2H, OCH
2, J=6.9 Hz), 1.32 (t, 3H, CH
3, J=6.9 Hz).
[0146] The following examples were prepared by analogy to the above procedure:

Starting from 4-methoxybenzaldehyde.
[0147] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, J=1.2 Hz), 8.28 (dd, 1H, H6, J=6.6, 1.2 Hz), 8.15 (m, 1H, phenyl-H),
7.88 (d, 1H, H7, J=6.6 Hz), 7.79 (AA'BB', 2H, benzyl-H), 7.49 (m, 1H, phenyl-H), 7.31
(m, 1H, phenyl-H), 7.09-7.00 (m, 3H, arom. H), 6.01 (s, 2H, CH
2), 3.80 (s, 3H, OCH
3).

Starting from 4-methylbenzaldehyde.
[0148] 1H NMR (200 MHz, DMSO-d
6) δ 9.24 (br s, 1H, H4), 8.29 (d, 1H, H6, J=6.7 Hz), 8.14 (m, 1H, phenyl-H), 7.88
(d, 1H, H7, J=6.7 Hz), 7.58-7.27 (m, 6H, arom. H), 7.00 (s, 1H, isoxazole-H), 6.04
(s, 2H, CH
2), 2.41 (s, 3H, CH
3).

Starting from 4-dimethylaminobenzaldehyde
[0149] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, J=1.6 Hz), 8.27 (dd, 1H, H6, J=7.0, 1.6 Hz Hz), 8.14 (m, 1H,
phenyl-H), 7.88 (d, 1H, H7, J=7.0 Hz), 7.65 (
AA'BB', 2H, benzyl-H), 7.49 (m, 1H, phenyl-H), 7.31 (m, 1H, phenyl-H), 6.98 (s, 1H,
isoxazole-H), 6.76 (AA'
BB', 2H, benzyl-H), 5.75 (s, 2H, CH
2), 2.95 (s, 6H, N(CH
3)
2).

Starting from 4-biphenylcarboxaldehyde
[0150] 1H NMR (200 MHz, DMSO-d
6) δ 9.25 (d, 1H, H4, J=1.6 Hz), 8.30 (dd, 1H, H6, J=7.0, 1.6 Hz Hz), 8.16 (m, 1H,
phenyl-H), 7.98-7.70 (m, 7H, arom. H), 7.57-7.26 (m, 5H, arom. H), 7.18 (s, 1H, isoxazole-H),
6.05 (s, 2H, CH
2).

Starting from 4-bromobenzaldehyde
[0151] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, J=1.6 Hz), 8.28 (dd, 1H, H6, J=7.0, 1.6 Hz), 8.16 (m, 1H, phenyl-H),
7.90-7.68 (m, 4H, arom. H), 7.51 (m, 1H, phenyl-H), 7.31 (m, 1H, phenyl-H), 7.15 (s,
1H, isoxazole-H), 6.05 (s, 2H, CH
2).

Starting from 4-benzyloxybenzaldehyde
[0152] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, J=1.6 Hz), 8.27 (dd, 1H, H6, J=7.0, 1.6 Hz Hz), 8.15 (m, 1H,
phenyl-H), 7.90-7.76 (m, 3H, arom. H), 7.57-7.26 (m, 7H, arom. H), 7.15-7.05 (m, 3H,
arom. H), 6.01 (s, 2H, N-CH
2), 5.16 (s, 2H, O-CH
2).

Starting from 4-(methylthio)benzaldehyde
[0153] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, 7=1.2 Hz), 8.28 (dd, 1H, H6, J=6.6, 1.2 Hz), 8.15 (m, 1H, phenyl-H),
7.88 (d, 1H, H7, J=6.6 Hz), 7.79 (AA'BB', 2H, benzyl-H), 7.50 (m, 1H, phenyl-H), 7.38-7.25
(m, 3H, arom. H), 7.10 (s, 1H, isoxazole-H), 6.03 (s, 2H, CH
2), 2.51 (s, 3H, SCH
3).

Starting from 2-fluoro-4-methoxybenzaldehyde
[0154] 1H NMR (200 MHz, DMSO-d
6) δ 9.26 (d, 1H, H4, J=1.2 Hz), 8.30 (dd, 1H, H6, J=6.6, 1.2 Hz), 8.14 (m, 1H, phenyl-H),
7.88 (d, 1H, H7, J=6.6 Hz), 7.80 (m, 1H, benzyl-H,), 7.49 (m, 1H, phenyl-H), 7.31
(m, 1H, phenyl-H), 7.04-6.71 (m, 3H, arom. H), 6.03 (s, 2H, CH
2), 3.82 (s, 3H, OCH
3).

[0155] Prepared as described above, starting from 4-chloro-2-fluorobenzaldehyde.
[0156] 1H NMR (200 MHz, DMSO-d
6) □ 9.26 (d, 1H, H4, J=1.4 Hz), 8.30 (dd, 1H, H6, J=6.8, 1.4 Hz), 8.14 (m, 1H, phenyl-H),
7.90-7.87 (m, 2H, arom. H), 7.66 (dd, 1H, arom. H, J=10.8, 1.8 Hz), 7.53-7.41 (m,
2H, arom. H), 7.31 (m, 1H, phenyl-H), 7.10 (d, 1H, isoxazole- H, J=2.7 Hz), 6.06 (s,
2H, CH
2).

Starting from 4-propoxybenzaldehyde
[0157] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, J=1.2 Hz), 8.29 (dd, 1H, H6, J=6.6, 1.2 Hz), 8.14 (m, 1H, phenyl-H),
7.88 (d, 1H, H7, J=6.6 Hz), 7.78 (AA'BB', 2H, benzyl-H), 7.49 (m, 1H, phenyl-H), 7.31
(m, 1H, phenyl-H), 7.06-7.00 (m, 3H, arom. H), 6.01 (s, 2H, CH
2), 3.97 (t, 2H, OCH
2, J=6.5 Hz), 1.73 (hex, 2H, CH
2), 0.97 (t, 3H, CH
3, J=7.3 Hz).

Starting from 4-phenoxybenzaldehyde
[0158] 1H NMR (200 MHz, DMSO-d
6) δ 9.25 (d, 1H, H4, J=1.2 Hz), 8.29 (dd, 1H, H6, J=6.6, 1.2 Hz), 8.16 (m, 1H, phenyl-H),
7.92-7.83 (m, 3H, arom. H), 7.58-7.05 (m, 10H, arom. H), 6.04 (s, 2H, CH
2).

Starting from 4-isopropoxybenzaldehyde.
[0159] 1H NMR (200 MHz, DMSO-d
6) δ 9.24 (d, 1H, H4, J=1.4 Hz), 8.28 (dd, 1H, H6, J=7.0, 1.4 Hz); 8.15 (m, 1H, phenyl-H),
7.89 (d, 1H, H7, J=7.0 Hz), 7.76 (AA'BB', 2H, benzyl-H), 7.50 (m, 1H, phenyl-H), 7.31
(m, 1H, phenyl-H), 7.05-6.98 (m, 3H, arom, H), 6.01 (s, 2H, CH
2), 4.67 (hept, 1H, OCH, J=6.2 Hz), 1.26 (d, 6H, (CH
3)
2, J=6.2 Hz).

[0160] Synthesized as described above, starting from 4-butoxybenzaldehyde (prepared by alkylation
of 4-hydroxybenzaldehyde).
[0161] 1H NMR (200 MHz, DMSO-d
6) δ 9.24 (d, 1H, H4, J=1.2 Hz), 8.28 (dd, 1H, H6, J=6.6, 1.2 Hz), 8.15 (m, 1H, phenyl-H),
7.89 (d, 1H, H7, J=6.6 Hz), 7.78 (
AA.'BB', 2H, benzyl-H), 7.50 (m, 1H, phenyl-H), 7.31 (m, 1H, phenyl-H), 7.07-7.01 (m,
3H, arom. H), 6.01 (s, 2H, CH
2), 4.01 (t, 2H, OCH
2, J=6.5 Hz), 1.72 (m, 2H, CH
2), 1.42 (m, 2H, CH
2), 0.93 (t, 3H, CH
3, J=7.2 Hz).

[0162] Synthesized as described above, starting from 4-propoxybenzaldehyde and using 2-(2-fluorophenyl)-1
(3)
H imidazo[4,5-c]pyridine instead of 2-(2,3-difluorophenyl)-1 (3)
H-imidazo[4,5-c]pyridine.
[0163] 1H NMR (200 MHz, DMSO-d
6) □ 9.18 (d, 1H, H4, J=1.2 Hz), 8.38-8.23 (m, 2H, arom. H), 7.85 (d, 1H, H7, J=6.6
Hz), 7.78 (
AA'BB', 2H, benzyl-H), 7.54-7.25 (m, 3H, phenyl- H), 7.06-7.00 (m, 3H, arom. H), 6.00
(s, 2H, CH
2), 3.98 (t, 2H, OCH
2, J=6.6 Hz), 1.73 (hex, 2H, CH
2), 0.97 (t, 3H, CH
3, J=7.3 Hz)..

Starting from 4-allyloxybenzaldehyde
[0164] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, J=1.2 Hz), 8.27 (dd, 1H, H6, J=6.7, 1.2 Hz), 8.14 (m, 1H, phenyl-H),
7.89 (d, 1H, H7, J=6.7 Hz), 7.79 (
AA'BB', 2H, benzyl-H), 7.50 (m, 1H, phenyl-H), 7.31 (m, 1H, phenyl-H), 7.09-7.00 (m,
3H, arom. H), 6.15-5.98 (m, 3H), 5.45-5.24 (m, 2H), 4.62 (d, 2H, J=4.8 Hz).

[0165] A mixture of 5-(chloromethyl)-3-(4-chlorophenyl)-isoxazole (2.00 g), NCS (11.75 g,
10 equivalents), glacial acetic acid (35 mL) and 20 drops of concentrated sulphuric
acid is heated to reflux for 3 days. After cooling to room temperature dichloromethane
(100 mL) is added , and the resulting mixture is extracted with water (2 x 100 mL)
and saturated aqueous sodium bicarbonate solution (2 x 100 mL). Then the organic phase
was dried over anhydrous sodium sulphate and evaporated. The crude product, thus obtained,
was purified by column chromatography (silica gel, eluent: petroleum ether / ethyl
acetate = 19 /1) to give 1.14 g.
[0166] The final step was performed as described above. Recrystallized from a mixture of
ethyl acetate and ethanol. Yield: 60%.
[0167] 1H NMR (200 MHz, DMSO-d
6) □ 9.20 (d, 1H, H4, J=1.4 Hz), 8.25 (dd, 1H, H6, J=6.8, 1.4 Hz), 8.15 (m, 1H, phenyl-H),
7.89 (d, 1H, H7, J=6.8 Hz), 7.83 (
AA'BB', 2H, benzyl-H), 7.66 (AA'
BB', 2H, benzyl-H), 7.51 (m, 1 H, phenyl-H), 7.31 (m, 1H, phenyl-H), 6.14 (s, 2H, CH
2).

[0168] 1H NMR (200 MHz, DMSO-d
6) δ 9.18 (d, 1H, H4, J=1.4 Hz), 8.22 (dd, 1H, H6, J=6.8, 1.4 Hz), 8.14 (m, 1H, phenyl-H),
7.89 (d, 1H, H7, J=6.8 Hz), 7.80 (
AA'BB', 2H, benzyl-H), 7.65 (AA'
BB', 2H, benzyl-H), 7.49 (m, 1H, phenyl-H), 7.30 (m, 1H, phenyl-H), 6.11 (s, 2H, CH
2).
[0169] Synthesized in analogy to the chloroisoxazole derivative 374u: 4 equ. NBS, 2.5 h
reflux, yield: 91 %.
EXAMPLE 375
[0170]

[0171] To a solution of 500 mg 3-methyl-1-phenylpyrazole in 4 mL carbontetrachloride is
added in portions at 70°C a mixture of 678 mg (1.2 equi.) NBS and AIBN (62.3 mg, 0.12
equ.). The resulting mixture is heated at reflux for an additional 15 minutes and
then cooled to room temperature. The precipitate is filtered off and the filtrate
is concentrated to precipitate the crude product (380 mg), which - after collecting
by filtration and drying - was used in the next step without further purification.
[0172] The final step was performed as described above. Recrystallized from ethyl acetate.
Yield: 35%.
EXAMPLE 377
Synthesis of the 4-methyl analogue 377
[0173]

[0174] A mixture of 2-(2,3-difluorophenyl)-1(3)H-imidazo[4,5-c]pyridine (2.00 g), 50 mg
methyltrioxorhenium, 100 mL methanol and 30 % aqueous hydrogen peroxide (4 mL) was
stirred at room temperature for 4 days. Then, additional 50 mg of methyltrioxorhenium
and 30% hydrogen peroxide (4 mL) were added and the resulting mixture was stirred
for another 2 days. After evaporation of the methanol water (200 mL) was added and
the pH was adjusted to 9 by addition of 2N NAOH. The resulting precipitate was filtered,
dried and recrystallized from a mixture of ethyl acetate (20 mL) and ethanol (53 mL)
to give 1.208 g (56.5%) of 2-(2,3-difluorophenyl)-1(3)
H-imidazo[4,5-c]pyrine 5-oxide.
[0175] 2-(2,3-Difluorophenyl)-1(3)
H-midazo[4,5-c]pyridine 5-oxide (1.00 g) was dissolved in dry tetrahydrofurane (100
mL) and MeMgBr-solution (14 mL, 3M in diethyl ether) was added dropwise under argon.
The resulting mixture was stirred for 1.5 hours at ambient temperature. Then water
(100 mL) was added slowly and the pH was adjusted to 8.5. Extraction with ethyl acetate
(3 x 70 mL), drying of the combined organic phases over anhydrous sodium sulphate
and evaporation of the solvent afforded 0.630 g (60 %) of crude 2-(2,3-difluorophenyl)-4-methyl-1(3)
H-midazo[4,5-c]pyridine. Recrystallization from a mixture of diisopropyl ether (20
mL) and ethyl acetate (34 mL) gave 240 mg (24.2 %) of pure 2-(2,3-difluorophenyl)-4-methyl-1(3)
H-imidazo[4,5-c]pyridine.
[0176] The final step was performed as described above. Purification by column chromatography
(silica gel, eluent: dichloromethane/methanol = 20/1). Yield: 22.4 %.
[0177] 1H NMR (200 MHz, DMSO-d
6) δ 8.25 (d, 1H, H6, J=6.8 Hz), 8.11 (m, 1H, phenyl-H), 7.89 (
AA'BB', 2H, benzyl-H), 7.77 (d, 1H, H7, J=6.8 Hz), 7.60-7.41 (m, 3H, arom. H), 7.30
(m, 1H, phenyl-H), 7.12 (s, 1H, isoxazole-H), 6.05 (s, 2H, CH
2), 3.05 (s, 3H, CH
3).
EXAMPLE 378
Synthesis of 7-substituted analogues
[0178]

[0179] 3-Methyl-4-nitropyridine 1-oxide (5.85 g) was dissolved in glacial acetic acid (115
mL) and hydrogenated in a Parr hydrogenation apparatus (catalyst: 220 mg PtO
2 x 2 H
2O, 50 psi) at ambient temperature for 2.5 h. Then the catalyst was filtered off and
the solvent was evaporated. After addition of 150 mL of water the pH was adjusted
to 12 by addition of 2N NaOH. The resulting solution was extracted 10 times with 100
mL of dichloromethane (containing 5 % methanol). The combined organic phases were
dried over anhydrous sodium sulphate and evaporated to give 3.81 g (83.6%) of 4-amino-3-methylpyridine.
[0180] 4-Amino-3-methylpyridine (3.00 g) was dissolved with icecooling in concentrated sulfuric
acid (36 mL). Then, fuming nitric acid (4,72 g) was added dropwise. After stirring
at room temperature for 1 h, the solution was heated at 60°C for 14 hours. After cooling
to ambient temperature, the reaction mixture was poured on ice and the resulting solution
was adjusted to pH 13 by addition of solid KOH. The precipitate was filtered off,
washed with water and dried. Yield: 1.198 g (31.3%) 4-amino-3-methyl-5-nitropyridine.
[0181] A mixture of 4-amino-3-methyl-5-nitropyridine (1.198 g), iron powder (1.748 g), ethanol
(52 mL) and hydrochloric acid (13 mL) was heated to reflux for 3 hours. After cooling
to room temperature the ethanol was distilled off and the resulting suspension was
diluted with water to 50 mL and the pH was adjusted to 13 by addition of 2N NaOH.
Extraction with ethyl acetate (3 x 70 mL), drying of the combined organic phases of
anhydrous sodium sulphate and evaporation of the solvent afforded 0.579 g (60%) of
3,4-diamino-5-methylpyridine.
[0182] The cyclization with 2,3-difluorbenzoic acid in PPA was performed as described above.
Purified by column chromatography (silica gel, eluent: dichloromethan/methanol = 12/1).
Yield: 22.2%.
[0183] The final step was performed as described above. Recrystallized from a mixture of
ethyl acetate and ethanol. Yield: 42.9% 378a.
[0184] 1H NMR (200 MHz, DMSO-d
6) δ 9.14 (d, 1H, H4, J=1.2 Hz), 8.17-8.10 (m, 2H, arom. H), 7.90 (AA'BB', 2H, benzyl-H),
7.60-7.42 (m, 3H, arom. H), 7.32 (m, 1H, phenyl-H), 7.15 (s, 1H, isoxazole-H), 5.99
(s, 2H, CH
2), 2.58 (s, 3H, CH
3).
[0185] The following compounds were prepared in analogy to the above procedures:

[0186] 1H NMR (200 MHz, DMSO-d
6) δ 9.32 (d, 1H, H4, J=1.4 Hz), 8.67 (d, 1H, H6, J=1.4 Hz), 8.16 (m, 1H, phenyl-H),
7.78 (AA'BB', 2H, benzyl-H), 7.54 (m, 1H, phenyl-H), 7.34 (m, 1H, phenyl-H), 7.07-7.00
(m, 3H, arom. H), 6.00 (s, 2H, CH
2), 4.07 (q, 2H, OCH
2, J=7.0 Hz), 1.33 (t, 3H, CH
3, J=7.0 Hz).

[0187] 1H NMR (200 MHz, DMSO-d
6) δ 9.47 (d, 1H, H4, J=1.4 Hz), 8.94 (d, 1H, H6, J=1.4 Hz), 8.16 (m, 1H, phenyl-H),
7.89 (
AA'BB', 2H, benzyl-H), 7.63-7.50(m, 3H, arom. H), 7.35 (m, 1H, phenyl-H), 7.16 (s, 1H,
isoxazole-H), 6.10 (s, 2H, CH
2).

[0188] 1H NMR (200 MHz, DMSO-d
6) δ 9.30 (br s, 1H, H4), 8.66 (dd, 1H, H6, J=7.4, 1.4 Hz), 8.15 (m, 1H, phenyl-H),
7.89 (AA'BB', 2H, benzyl-H), 7.61-7.47 (m, 3H, arom. H), 7.33 (m, 1H, phenyl-H), 7.16
(s, 1H, isoxazole-H), 6.04 (s, 2H, CH
2).
EXAMPLE 379
1,2,4-oxadiazoles
[0189]

[0190] A mixture of 4-methoxybenzonitrile (1.00 g), hydroxylamine hydrochloride (0.785 g),
KOH (0.640 g) and methanol (20 mL) was heated to reflux for 3 hours. After cooling
to room temperature the precipitate was filtered off and the filtrate was evaporated.
The resulting residue was dissolved in 1N HCl (100 mL) and the resulting solution
was extracted with diethyl ether (100 mL). The aqueous phase was neutralized by addition
of solid NaHCO
3 and extracted with diethyl ether (2 x 100 mL). The combined organic phases were dried
over anhydrous sodium sulphate and evaporated to give 450 mg of the desired amidoxime,
which was used without further purification.
[0191] A solution of 700 mg of (4-methoxyphenyl)amidoxime and 1.08 g (1.5 equivalents) chloroacetic
anhydride in toluene (30 mL) was heated to reflux for 3 hours. After cooling to ambient
temperature the reaction mixture was extracted subsequently with water (twice 50 mL),
saturated sodium bicarbonate solution (twice 50 mL) and water (50 mL). Finally, the
toluene phase was dried over anhydrous sodium sulphate and evaporated to give 660
mg of the desired oxadiazole, which was used without further purification.
[0192] The final step was performed as described above (see, for example, isoxazole analogues).
Recrystallized from a mixture of ethyl acetate and ethanol. Yield: 35%
[0193] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, J=1.4 Hz), 8.28 (dd, 1H, H6, J=6.5, 1.4 Hz), 8.15 (m, 1H, phenyl-H),
7.92-7.77 (m, 3H, arom. H), 7.49 (m, 1H, phenyl-H), 7.33 (m, 1H, phenyl-H), 7.08-7.00
(m, 3H, arom. H), 6.01 (s, 2H, CH
2), 3.80 (s, 3H, OCH
3).

[0194] Prepared as described above, starting from 4-methylbenzonitrile.
[0195] 1H NMR (200 MHz, DMSO-d
6) δ 9.23 (d, 1H, H4, J=1.4 Hz), 8.31 (dd, 1H, H6, J=6.8, 1.4 Hz), 8.14 (m, 1H, phenyl-H),
7.93-7.78 (m, 3H, arom. H), 7.50 (m, 1H, phenyl-H), 7.35-7.27 (m, 3H, arom. H), 6.25
(s, 2H, CH
2), 2.35 (s, 3H, CH
3).

[0196] Prepared as described above, starting from 4-chlorobeazonitrile.
[0197] 1H NMR (200 MHz, DMSO-d
6) δ 9.24 (d, 1H, H4, J=1.4 Hz), 8.31 (dd, 1H, H6, J=6.8, 1.4 Hz), 8.16 (m, 1H, phenyl-H),
7.96-7.90 (m, 3H, arom. H), 7.60 (AA'
BB', 2H, benzyl-H), 7.49 (m, 1H, phenyl-H), 7.34 (m, 1H, phenyl-H), 6.28 (s, 2H, CH
2).
PART B
METHODOLOGY FOR DETERMINATION OF ANTIVIRAL AND CYTOSTATIC ACTIVITY
Cells and viruses
[0198] Madin-Darbey Bovine Kidney (MDBK) cells were maintained in Dulbecco's modified Eagle
medium (DMEM) supplemented with BVDV-free 5% fetal calf serum (DMEME-FCS) at 37°C
in a humidified, 5% CO
2 atmosphere. BVDV-1 (strain PE515) was used to assess the antiviral activity in MDBK
cells.
Anti-BVDV assay
[0199] Ninety-six-well cell culture plates were seeded with MDBK cells in DMEM-FCS so that
cells reached 24 hr later confluency. Then medium was removed and serial 5-fold dilutions
of the test compounds were added in a total volume of 100 pL, after which the virus
inoculum (100 µL) was added to each well. The virus inoculum used resulted in a greater
than 90% destruction of the cell monolayer after 5 days incubation at 37°C. Uninfected
cells and cells receiving virus without compound were included in each assay plate.
After 5 days, medium was removed and 90 µL of DMEM-FCS and 10 µL of MTS/PMS solution
(Promega) was added to each well. Following a 2 hr incubation period at 37°C the optical
density of the wells was read at 498 nm in a microplate reader. The 50% effective
concentration (EC
50) value was defined as the concentration of compound that protects 50% of the cell
monolayer from virus-induced cytopathic effect.
Anti-HCV assay/ Replicon assay - 1
[0200] Huh-5-2 cells [a cell line with a persistent HCV replicon I389luc-ubi-neo/NS3-3'/5.1;
replicon with firefly luciferase-ubiquitin-neomycin phosphotransferase fusion protein
and EMCV-IRES driven NS3-5B HCV polyprotein] was cultured in RPMI medium (Gibco) supplemented
with 10% fetal calf serum, 2mM L-glutamine (Life Technologies), 1x non-essential amino
acids (Life Technologies); 100 IU/mL penicillin and 100 ug/ml streptomycin and 250
ug/mL G418 (Geneticin, Life Technologies). Cells were seeded at a density of 7000
cells per well in 96 well View Plate
™ (Packard) in medium containing the same components as described above, except for
G418. Cells were allowed to adhere and proliferate for 24 hr. At that time, culture
medium was removed and serial dilutions of the test compounds were added in culture
medium lacking G418. Interferon alfa 2a (500 IU) was included as a positive control.
Plates were further incubated at 37°C and 5% CO
2 for 72 hours. Replication of the HCV replicon in Huh-5 cells results in luciferase
activity in the cells. Luciferase activity is measured by adding 50 µL of 1 x Glo-lysis
buffer (Promega) for 15 minutes followed by 50 µL of the Steady-Glo Luciferase assay
reagent (Promega). Luciferase activity is measured with a luminometer and the signal
in each individual well is expressed as a percentage of the untreated cultures. Parallel
cultures of Huh-5-2 cells, seeded at a density of 7000 cells/ well of classical 96-
well cell culture plates (Becton-Dickinson) are treated in a similar fashion except
that no Glo-lysis buffer or Steady-Glo Luciferase reagent is added. Instead the density
of the culture is measured by means of the MTS method (Promega).
Quantitative analysis of HCV RNA by Tagman real-time RT-PCR
[0201] Replicon cells were plated at 7.5 × 10
3 cells per well in a 96-well plate plates at 37°C and 5% CO
2 in Dulbecco's modified essential medium containing 10% fetal calf serum, 1% nonessential
amino acids and 1 mg/ml Geneticin. After allowing 24 h for cell attachment, different
dilutions of compound were added to the cultures. Plates were incubated for 5 days,
at which time RNA was extracted using the Qiamp Rneazyi Kit (Qiagen, Hilden, Germany).
A 50 µL PCR reaction contained TaqMan EZ buffer (50 mmol/L Bicine, 115 mmol/L potassium
acetate, 0.01 mmol/L EDTA, 60 nmol/L 6-carboxy-X-rhodamine, and 8% glycerol, pH 8.2;
Perkin Elmer Corp./Applied Biosystems), 300 umol/L deoxyadenosine triphosphate, 300
umol/L deoxyguanosine triphosphate, 300 umol/L deoxycytidine triphosphate, 600 umol/L
deoxyuridine triphosphate, 200 umol/L forward primer [5'-ccg gcT Acc Tgc ccA TTc],
200 µmol/L reverse primer [ccA GaT cAT ccT gAT cgA cAA G], 100 µmol/L TaqMan probe
[6-FAM-AcA Tcg cAT cgA gcg Agc Acg TAc-TAMRA], 3 mmol/L manganese acetate, 0.5 U AmpErase
uracil-
N glycosylase, 7.5 U rTth DNA polymerase, and 10 µl of RNA elution. After initial activation
of uracil-
N glycosylase at 50°C for 2 minutes, RT was performed at 60°C for 30 minutes, followed
by inactivation of uracil-
N-glycosylase at 95°C for 5 minutes. Subsequent PCR amplification consisted of 40 cycles
of denaturation at 94°C for 20 seconds and annealing and extension at 62°C for 1 minute
in an ABI 7700 sequence detector. For each PCR run, negative template and positive
template samples were used. The cycle threshold value (Ct-value) is defined as the
number of PCR cycles for which the signal exceeds the baseline, which defines a positive
value. The sample was considered to be positive if the Ct-value was <50. Results are
expressed as genomic equivalents (GE).
Anti-HCV assay/ Replicon assay - 2
HCV Replicon Media
DMEM w/ High Glucose (or MEM)
1x Glutamine
1x Sodium Pyruvate
10% Heat Inactivated FBS
1x Antibiotics
Cell Culture Preparation
- 1. Unthaw frozen stock in 10-12 mls of Media
- 2. Allow cells to attach before adding G418 (4-6hrs)
- 3. Add G418 for a final concentration of 200ug/mL (higher amounts are possible but
cells grow slowly)
- 4. Split cells 1:4 to 1:6 for optimal growth
- 5. In-house replicon seems to maintain Luciferase signal for ~20 passages
HCV Replicon Assay
- 1. Dilute compounds in 100uL of HCV Replicon Media (without G418). If compounds are
diluted in DMSO add DMSO to media (Final DMSO concentration should be < 1%)
- 2. Once cells have reached 80-90% confluency, trypsinize with 1x Trypsin
- 3. Do not over trypsinize. These cells tend to clump if over trypsinized
- 4. For 96 well format add 6,000-8,000 cells per well (G418 is withheld during compound
testing)
- 5. Incubate for 3 days at 37°C. Cells should be very close to confluent.
- 6. Remove media and wash cells with 1x PBS
- 7. Remove PBS and add 100 µL of 1x Promega Lysis Buffer
- 8. Incubate cells at Room Temperature for 5-20 minutes
- 9. Add 100 µL of room temperature Luciferase Substrate Solution (Promega) to Microfluor
Black Plate (VWR)
- 10. Thoroughly Mix Cell lysate (pipet up and down) before adding to Luciferase substrate
- 11. Add 75 µL of lysate to the Luciferase substrate solution
- 12. Read Plate On Top Count (FusionLucB program - 5 second read)
- 13. Left over lysate can be frozen and used for later analysis
Determination of cytostatic effect on MDBK cells
[0202] The effect of the drugs on exponentially growing MDBK cells was assessed as follows.
Cells were seeded at a density of 5000 cell/well in 96 well plates in MEM medium (Gibco)
supplemented with 10% fetal calf serum, 2mM L-glutamine (Life Technologies) and bicarbonate
(Life Technologies). Cells were cultured for 24 hr after which serial dilutions of
the test compounds were added. Cultures were then again further incubated for 3 days
after which the effect on cell growth was quantified by means of the MTS method (Promega).
The concentration that results in 50% inhibition of cell growth is defined as the
50% cytostatic concentration (CC
50)
HCV CC50 Assay Protocol
HCV Replicon Media
[0203]
DMEM w/ High Glucose (or MEM)
1x Glutamine
1x Sodium Pyruvate
10% Heat Inactivated FBS
1x Antibiotics
Cell Culture Preparation
- 1. Unthaw frozen stock in 10-12 mls of Media
- 2. Allow cells to attach before adding G418 (4-6hrs)
- 3. Add G418 for a final concentration of 200ug/ml (higher amounts are possible but
cells grow slowly)
- 4. Split cells 1:4 to 1:6 for optimal growth
- 5. In-house replicon seems to maintain Luciferase signal for ~20 passages
HCV Replicon Assay
- 1. Dilute compounds in 100uL of HCV Replicon Media (without G418). If compounds are
diluted in DMSO add DMSO to media (Final DMSO concentration should be < 1 %)
- 2. Once cells have reached 80-90% confluency, trypsinize with 1x Trypsin
- 3. Do not over trypsinize. These cells tend to clump if over trypsinized
- 4. For 96 well format add 6,000-8,000 cells per well (G418 is withheld during compound
testing)
- 5. Incubate for 3 days at 37° C. Cells should be very close to confluent.
- 6. Remove media and add 200pL of a 0.2mg/mL MTT solution prepared in media.
- 7. Incubate for 1.5 hours to 2 hours.
- 8. Remove media and add 150µL of DMSO
- 9. Mix and incubate for 5 mins at room temperature
- 10. Read plate at 530nm in the plate reader.
Results
[0204] The compounds of Examples 2, 3A, 4 and 5 were found to have an EC50 in Replicon assay
2 of, respectively in micromoles, 0.01, 0.02, 0.01 and 0.0039, and to have a CC50
in the CC50 assay protocol of, respectively in micromoles, 26, 34, 19 and 10.8 (replicate
13.4).
[0205] Substantially all of the compounds in Table 1 demonstrated activity of at least 1
micromolar in an anti-HCV/Replicon assay system. In addition, a number of the compounds
also exhibited anti-BVDV activity.