Field of the Invention
[0001] The invention generally relates to the internalization of non-invasive bacteria in
eukaryotic cells for therapeutic and/or prophylactic purposes; the invention particularly
relates to the use of adenylate cyclase toxin (ACT) or a functionally equivalent variant
thereof, as an inducing agent for the internalization of non-invasive bacteria in
eukaryotic cells.
Background of the Invention
[0002] The principle of vaccination is to induce a long-term protective immune response
in the host against a virulent microorganism. The purpose of the vaccines is therefore
to prevent and control future infections.
[0003] Many pathogenic bacteria are capable of escaping from the immune system by inducing
their own internalization in mammal cells and efficiently replicating therein. The
entry of said bacteria to the cell interior is mediated by typical phagocytosis when
the cells are professional phagocytes, or by induced phagocytosis in the case of non-phagocytic
cells (epithelial cells, hepatocytes, fibroblasts and endothelial cells).
[0004] Taking advantage of this property, the bactofection technique has been developed
as a tool facilitating genetic vaccination. Bactofection consists of the transfer
of plasmid DNA to mammal cells mediated by intracellular bacteria. These bacteria
are characterized in that for their development and replication they need to be in
the interior of a cell. Thus, the use of intracellular bacteria has become a direct
method for DNA transport which achieves the expression of heterologous proteins (protein
antigens, toxins or enzymes) capable of triggering both humoral and cellular immune
responses.
[0005] The strategy of bactofection is based on the susceptibility of transforming intracellular
pathogenic bacteria with eukaryotic expression vectors. Attenuated strains of these
bacteria can thus transport said plasmids to the antigen-presenting cells (APC). Once
internalized, the bacteria alter the characteristics of the phagosomal compartment
preventing the fusion with lysosomes and thus assuring their survival. The capacity,
in many of them, of lysing the phagosome and replicating in the cytosol has also been
described. Experiments with
Listeria monocytogenes have shown that plasmid DNA is transported to the cell cytosol after a partial self-destruction
of the bacterium. Once in the cytosol, the DNA can be transported to the cell nucleus
and, the antigens encoded by the plasmid are thus expressed in the antigen-presenting
cell.
[0006] Although the mechanism of transporting plasmid DNA from the phagolysosome to the
cell nucleus is not known, it has been shown that these attenuated strains can be
used as vaccine carriers not only for rodents, but also for primate cells and for
human dendritic cells.
[0007] One of the main attractions of these bacterial vectors is their potential for being
administered orally, in addition to allowing the induction of immune response in the
mucosa, essential in those diseases caused by pathogens with an entryway into the
organism through the mucosae.
[0008] Another alternative mechanism of vaccination used in recent years is based on the
recombinant antigen-presenting bacterial systems. In these models, the heterologous
antigens synthesized by bacteria are only accessible after the disintegration of the
bacterium. Alternatives for exporting antigens to the cytoplasm have been developed,
including the use of the MalE and OmpA export signals, or fusion with the LT-B toxin
of
Escherichia coli. Two heterologous antigen secretion systems by Gram negative bacteria have also been
described, including the type III secretion system, which allows the "injection" of
the antigen into the target cell and the AIDA autotransporter system. However, many
of these systems can only carry small peptides of the heterologous antigens. To solve
the antigen size problem, the use of the hemolysin (HlyA) secretion system has begun
since it seems that it does not involve any limitation in the size of the transported
antigens. This transporter allows the active secretion of large heterologous antigens
by attenuated bacteria, which has lead to the development of a large number of live
recombinant vaccines. Many heterologous proteins presented by means of this route
induce humoral and/or cellular immune responses to the organism host. These immune
responses show that there is an active expression and secretion of the heterologous
antigens
in vivo.
[0009] Bacterial transporters can colonize the cell surface, the specialized phagosome of
the antigen-presenting cells (APC) or the cytosol of the infected cells and transport
one and the same antigen to different compartments of the APC, thus triggering different
immune responses against one and the same antigen.
[0010] In view of the foregoing, there is a need to provide an alternative mechanism to
the use of attenuated pathogen strains in these bacterial vector vaccines due to the
risk they involve since they are formed by live microorganisms. In fact, one of the
main drawbacks of these vaccines is the possible reversion towards the pathogenicity,
or that these microorganisms maintain their pathogen activity. Despite the high degree
of attenuation which is achieved in this type of bacteria, their application can be
compromised in patients with primary or secondary immunodeficiencies or who have an
immunosuppression condition caused by drugs or opportunistic diseases, as well as
in pregnant women.
[0011] Adenylate cyclase toxin (ACT) is a protein with the capacity of being internalized
in the cytoplasm of eukaryotic cells and, after its activation by calmodulin, catalyzing
the uncontrolled transformation of adenosine triphosphate (ATP) into cyclic adenosine
monophosphate (cAMP) causing the intoxication of said eukaryotic cell. Said ACT is
a single example of an enzymatically active toxin capable of translocating directly
through the plasma membrane of a cell, without receptor-mediated endocytosis being
necessary. The molecular mechanism whereby the translocation of the catalytic domain
to the cytoplasm of the cells takes place is currently unknown. It is known that in
some cell types a negative membrane potential is necessary, although the toxin can
efficiently invade cells with a low membrane potential, as in the case of erythrocytes,
which furthermore lack intracellular membrane trafficking. In this case, it is believed
that the penetration into the interior of the erythrocyte is initiated with an unspecific
adsorption of the toxin on the surface of the cell, followed by direct insertion and
translocation of the 40 kDa segment through the membrane, although the molecular events
taking place in the process are not known. Adenylate cyclase is, like α-hemolysin
of
E. coli, a toxin with broad cell specificity. It has recently been described that integrin
α
Mβ2 (CD11b/CD18) constitutes the specific receptor for ACT in leukocytes, as well as
the possible use of said ACT in the delivery of epitopes of T cells towards the presentation
routes of the major histocompatibility complex class I or class II.
Summary of the Invention
[0012] It has been surprisingly found now that when adenylate cyclase toxin (ACT) is bound
to the outer membrane of a non-invasive bacterium, said bacterium can be internalized
and invade a eukaryotic cell.
[0013] Therefore, in one aspect, the invention relates to the use of ACT, or a functionally
equivalent variant thereof, as an inducing agent for the internalization of non-invasive
bacteria in eukaryotic cells.
[0014] In another aspect, the invention relates to a non-invasive bacterium comprising ACT
or a functionally equivalent variant thereof bound to its membrane. In a particular
embodiment, said bacterium furthermore comprises
- (i) a polynucleotide encoding a heterologous polypeptide of interest, or
- (ii) a gene construct comprising a polynucleotide according to (i), or
- (iii) a plasmid comprising a gene construct according to (ii) or
- (iv) a heterologous polypeptide of interest.
[0015] In another aspect, the invention relates to a pharmaceutical composition comprising
a non-invasive bacterium comprising ACT or a functionally equivalent variant thereof
provided by this invention bound to its membrane, and a pharmaceutically acceptable
carrier.
[0016] Additional aspects of the present invention include the different uses of said non-invasive
bacterium comprising ACT or a functionally equivalent variant thereof bound to its
membrane, such as the use of said bacterium as a medicament and the use of said bacterium
in the preparation of a vaccine.
[0017] In another aspect, the invention relates to a process for obtaining a non-invasive
bacterium comprising ACT or a functionally equivalent variant thereof bound to its
membrane, comprising incubating a non-invasive bacterium with ACT, or with a functionally
equivalent variant thereof, or alternatively transforming a non-invasive bacterium
with a polynucleotide encoding the ACT or a functionally equivalent variant thereof.
[0018] Finally, the present invention relates to a method for inducing the internalization
of non-invasive bacteria in eukaryotic cells comprising:
- (a) incubating a non-invasive bacterium in the presence of ACT, or a functionally
equivalent variant thereof, or alternatively transforming the non-invasive bacterium
with a polynucleotide encoding ACT, or a functionally equivalent variant thereof,
and
- (b) contacting the bacterium obtained in paragraph (a) with a eukaryotic cell culture.
Brief Description of the Drawings
[0019]
Figure 1 shows the intracellular cAMP levels in CHO cells after the treatment with
different ACT concentrations (0.5-20 µg/ml) or with E. coli bacteria coated with ACT at different concentrations (10-100 µg).
Figure 2 shows the reorganization of the cytoskeleton of CHO cells induced by ACT.
Figure 2a shows the control CHO cells stained with Alexa Fluoro488 phalloidin and
4',6-diamidino-2-phenylindole (DAPI) to see the F-actin fibers and DNA, respectively.
Figure 2b shows CHO cells treated with soluble ACT at a concentration of 20 µg/ml.
Figure 2c shows CHO cells treated with soluble ACT at a concentration of 2 µg/ml.
Figure 2d shows CHO cells treated with E. coli coated with ACT. The amount of ACT bound to the cell surface is 0.55 µg toxin/108 bacteria. Primary anti-ACT monoclonal antibodies and secondary antibodies bound to
Texas Red were used to detect the bacteria coated with ACT.
Figure 3 corresponds to scanning electron microscope pictures in which the interaction
of the bacteria coated with ACT with the CHO cells is seen. The co-incubation of the
CHO cells and E. coli coated with ACT results in the formation of structures similar to the pseudopodia
surrounding the bacteria prior to their internalization.
Figure 4 shows the different steps of the internalization of bacteria coated with
ACT in CHO cells. Figure 4a shows the contact of the bacteria with the cell membrane.
Figure 4b shows a strong adhesion of the bacterium to the cell membrane. Figure 4c
shows the phagocytosis of the bacterium. Figure 4d shows an invasive bacterium surrounded
by membranous vesicles.
Figure 5 shows the interaction of ACT with the actin detected by means of dot blotting
technique.
Figure 6 shows pyrene-labeled actin polymerization induced by ACT. The kinetics of
polymerization is detected by the increase of fluorescence occurring when polymerizing
pyrene actin.
Figure 7 are electron microphotographs corresponding to control F-actin and to actin
filaments obtained by means of the incubation of G-actin with ACT.
Figure 8 shows large halos of polymerized actin surrounding bacteria coated with ACT
and incubated with G-actin.
Detailed Description of the Invention
[0020] In one aspect, the present invention relates to the use of adenylate cyclase toxin
(ACT), or a functionally equivalent variant thereof, as an inducing agent for the
internalization of non-invasive bacteria in eukaryotic cells.
[0021] As it is used in this description, the term "adenylate cyclase toxin" or "ACT" (also
known as CyaA) relates to a protein which catalyzes the transformation of ATP into
cAMP and it is furthermore capable of translocating directly through the plasma membrane
of a eukaryotic cell. In a particular embodiment, said ACT is derived from a microorganism
of the
Bordetella sp. genus, e.g.,
B. pertussis, B. parapertussis, B. bronchiseptica, etc., or of related molecules of other bacteria. Related molecules include proteins
of other bacteria with sequences homologous to those of ACT. In another particular
embodiment, said ACT has the amino acid sequence shown in SEQ ID NO: 1, which corresponds
to the sequence of
B. pertussis ACT (also referred to as CyaA) accessible in the Swiss-Prot database under code P15318
or in the NCBI database under code NP_879578. Likewise, in another particular embodiment,
the ACT corresponds to the recombinant protein expressed in
E. coli K12 XL-1blue transformed with the plasmid pT7CACT1 obtained according to Osicka
et al. (
Osicka, RA et al. 2000 Infect. Immun 68:247-256) or Martin et al. (
Martin et al., 2004. J. Bacteriol 186:3760-3765). The CyaA DNA sequence lacks polymorphisms between the
B. pertussis isolates (
Packard ER, et al., 2004, J. Med. Microbiol. Vol. 53: 355-365) and has high homology between the different
Bordetella sp. species with an identity greater than 97% between
B. pertussis and
B. bronchiseptica or
B. parapertussis (
Parkhill, J. et al. 2003. Nat. Genet. Vol. 35: 32-40).
[0022] As it is used herein, the term "protein" relates to an amino acid molecular chain,
bound by covalent or non-covalent bonds. The term furthermore includes all the physiologically
relevant post-translational chemical modification forms, for example, glycosylation,
phosphorylation or acetylation, provided that the capacity of inducing the internalization
of non-invasive bacteria in eukaryotic cells is maintained.
[0023] As it is used herein, the expression "functionally equivalent variant" relates to
a protein the amino acid sequence of which (i) is substantially homologous to the
amino acid sequence of a certain ACT and (ii) maintains at least one of the activities
of said ACT, for example, the capacity of catalyzing the transformation of ATP into
cAMP, the capacity of acting as an inducing agent for the internalization of non-invasive
bacteria in eukaryotic cells, etc., preferably at least the latter.
[0024] An amino acid sequence is substantially homologous to a certain amino acid sequence
when it has a degree of identity of at least 70%, advantageously of at least 75%,
typically of at least 80%, preferably of at least 85%, more preferably of at least
90%, still more preferably of at least 95%, 97%, 98% or 99%, with respect to said
certain amino acid sequence. The degree of identity between two amino acid sequences
can be determined by conventional methods, for example, by means of standard sequence
alignment algorithms known in the state of the art, such as, for example BLAST [
Altschul S.F. et al. Basic local alignment search tool. J Mol Biol. 1990 Oct 5; 215(3):403-10].
[0025] The capacity of ACT, or of a functionally equivalent variant thereof, of acting as
an inducing agent for the internalization of non-invasive bacteria in a eukaryotic
cell can be evaluated by any conventional method, for example, by means of a protection
assay with antibiotics such as that described in Example 1 (section 1.9 of Materials
and Methods).
[0026] The person skilled in the art understands that the mutations in the nucleotide sequence
of ACT which give rise to conservative substitutions of amino acids in positions that
are not critical for the functionality of the protein are evolutionarily neutral mutations
which do not affect its overall structure or functionality. Said variants fall within
the scope of the present invention. Those functionally equivalent variants of a certain
ACT having insertions, deletions or modifications of one or more amino acids with
respect to said certain ACT, and furthermore preserve the capacity of acting as an
inducing agent for the internalization of non-invasive bacteria in eukaryotic cells
are also within the scope of the invention.
[0027] Therefore, as it is used herein, the term "functionally equivalent variant" also
includes any functionally equivalent fragment of an ACT. The term "fragment" relates
to a peptide comprising a portion of a protein. In this case, a functionally equivalent
fragment of an ACT is a peptide or protein comprising a portion of an ACT and maintaining
the capacity of acting as an inducing agent for the internalization of non-invasive
bacteria in eukaryotic cells.
[0028] Virtually any ACT or functionally equivalent variant thereof can be used for putting
the present invention into practice; nevertheless, in a particular embodiment, said
ACT is an ACT isolated from
Bordetella sp., e.g.,
B. pertussis, B. brochiseptica, B. parapertussis, etc. In a specific embodiment, said ACT has the amino acid sequence shown in SEQ
ID NO: 1.
[0029] Said ACT can be obtained from a microorganism producing said protein in a native
or recombinant form. ACT can be obtained and purified by conventional methods known
by the person skilled in the art. By way of a non-limiting illustration, Example 1
describes a process for obtaining and purifying an ACT with the capacity of being
internalized in eukaryotic cells and efficiently replicating therein.
[0030] In the present invention, "inducing agent for the internalization of non-invasive
bacteria in eukaryotic cells" is understood as that agent which is capable of causing
or inducing the entry of a non-invasive bacterium in a eukaryotic cell. By way of
illustration, the use of ACT as an inducing agent for the internalization of non-invasive
bacteria is aimed at those bacteria (i) which lack the capacity of being internalized
in a eukaryotic cell naturally, or (ii) which, despite having said capacity of being
internalized in a eukaryotic cell naturally ("invasive bacteria"), have been genetically
modified so that they cannot do so.
[0031] Therefore, as it is used herein, the expression "non-invasive bacterium" relates
to a bacterium which is not an invasive bacterium. Likewise, the term "invasive bacterium",
relates to a bacterium which naturally has the capacity of inducing its own internalization
or entry in the cytoplasm of a eukaryotic cell and efficiently replicating therein.
A definition of "invasive bacterium" can be found in
Bonazzi M. and Cossart, P. 2006. Bacterial entry into cells: a role for the endocytic
machinery. FEBS Lett Vol.580(12):2962-2967. Assays to determine if a bacterium is invasive are widely known by the person skilled
in the art, see, for example
Boer, EC., et al. 1996. Cytometry. Vol. 25(4): 381-387;
Burton, E.A., et al. Abl tyrosine kinases are required for infection by Shigella flexneri.
The EMBO Journal. Vol. 22(20): 5471-5479; and international patent application
WO 90/12867.
[0032] In another aspect, the invention relates to a bacterium, hereinafter non-invasive
bacterium of the invention, comprising an ACT or a functionally equivalent variant
thereof bound to its membrane. Said ACT or functionally equivalent variant thereof
can be associated with the membrane of the non-invasive bacterium by coating, adhering
or anchoring, for example, it can be associated with the outer surface of the membrane
of the non-invasive bacterium by coating, adhering or anchoring thereon. In the examples
attached to the present description, said ACT is adhered on the outer surface of the
membrane of a non-invasive bacterium.
[0033] Choosing the type of non-invasive bacterium used according to the present invention
will depend, among other factors, on the size of its genome, on the replicative capacity
and on genetic stability. The non-invasive bacterium is preferably a non-pathogenic
bacterium (i.e., it does not have sufficient metabolic capacity to cause damage, alone
or in association with other factors, to a subject and cause disease) for an animal,
more preferably for humans. By way of a non-limiting illustration, non-invasive bacteria
according to the present invention include, for example,
Escherichia coli and
Agrobacterium tumefaciens, as shown in the examples attached to the present description.
[0034] As will be discussed below, the binding of said ACT to the outer membrane of the
non-invasive bacterium allows the latter to be internalized in eukaryotic cells; therefore
the bacterium of the invention can be used to introduce polynucleotides, plasmids
and/or heterologous polypeptides of interest in eukaryotic cells.
[0035] Therefore, in a particular embodiment, the bacterium of the invention furthermore
comprises
- (i) a polynucleotide encoding a heterologous polypeptide of interest, or
- (ii) a gene construct comprising a polynucleotide according to (i), or
- (iii) a plasmid comprising a gene construct according to (ii) or
- (iv) a heterologous polypeptide of interest.
[0036] As is used herein, the term "heterologous polypeptide of interest" relates to any
heterologous polypeptide (e.g., peptide or protein) which is to be introduced in a
eukaryotic cell, such as an antigen, a toxin, an enzyme, etc. Non-limiting illustrative
examples of antigens which can be used as "heterologous polypeptides of interest"
in the present invention include:
■ Peptides or proteins capable of (suitable or designed for) inducing an immune response
against an infectious disease, such as an infectious disease in animals caused by pathogenic microorganisms of animals,
including humans, for example, virus, bacteria, fungi and infectious parasites, relevant
in human or animal health.
The proteins or peptides capable of inducing an immune response can be recombinant
proteins or peptides, identical or similar to the natural antigens of a specific microorganism.
Non-limiting illustrative examples of infectious virus include virus of the families:
Arteriviridae, Retroviridae, Picornaviridae, Calciviridae, Togaviridae, Flaviridae,
Coronoviridae, Rhabdoviradae, Filoviridae, Paramyxoviridae, Orthomyxoviridae, Bungaviridae,
Arenaviridae, Reoviridae, Birnaviridae, Hepadnaviridae, Parvoviridae (parvovirus),
Papovaviridae, Adenoviridae, Herpesviridae, Poxviridae, Iridoviridae, etc. Examples
of antigens which can be used according to the present invention include but are not
limited to HIV antigens, gp120 antigen, hepatitis B surface antigen, rotavirus antigens
such as VP4 and VP7, influenza virus antigens such as hemagglutinin or nucleoprotein,
thymidine kinase herpes simplex antigen, etc.
Non-limiting illustrative examples of bacteria include both Gram positive bacteria,
e.g., Pasteurella sp., Staphylococcus sp., Streptococcus sp., etc., and Gram negative bacteria, e.g., Escherichia coli, Pseudomonas sp., Salmonella sp., etc. Specific examples of infectious bacteria include: Helicobacter pylori, Borelia burgdorferi, Legionella pneumoplailia, Mycobacteria sp. (e.g., M. tuberculosis, M. avium, M. intracellulare, M. kansaii, M. gordonae), Staphylococcus
aureus, Neisseria gonorrhoeae, Neisseria meningitidis, Listeria monocytogenes, Streptococcus
pyogefaes (Streptococcus Group A), Streptococcus agalactiae (Streptococcus Group B), Streptococcus (viridans group), Streptococcus faecalis, Streptococcus bovis, Streptococcus (anaerobic species), Streptococcus pneumoniae, Campylobacter sp., Enterococcus sp., Haemophilus influenzae,
Bacillus aratracis, Corynebacterium diphtheriae, Corynebacterium sp., Erysipelothrix
rhusiopathiae, Clostridium perfringers, Clostridium tetani, Enterobacter aerogenes,
Klebsiella pneumoniae, Pasturella multocida, Bacteroides sp., Fusobacterium nucleatum,
Streptobacillus moniliformis, Treponemapallidium, Treponema pertenue, Leptospira, Rickettsia, Actinornyces israelli, Chlamydia, etc.
Non-limiting illustrative examples of infectious fungi include Cryptococcus neoformans, Histoplasma capsulatum, Coccidioides immitis, Blastomyces
dermatitidis, Chlamydia trachomatis and Candida albicans.
By way of non-limiting illustration, protozoa are included among the infectious parasites,
such as Plasmodium sp., protozoa causing malaria, e.g. P. falciparum, P. malariae, P. ovale, P. vivax, etc., Leishmania sp., protozoa causing leishmaniasis, e.g., L. major, L. donovani, L. infantum, L. braziliensis, L. panamensis, L. mexicana, etc., Toxoplasma gondii, Schistosoma sp., etc., as well as parasitic nematodes, such as Dirofilaria immitis, etc. Examples of antigens for these parasites include Plasmodium spp. circumsporozoite antigen; Plasmodium spp. merozoite surface antigen; Leishmania spp. gp63, etc.
■ Peptides or proteins associated with tumors or cancers ("tumor markers") capable of
(suitable or designed for) inducing an immune response against a tumor or cancer cell, therefore the heterologous polypeptide of interest can be used in the treatment
of cancers by means of the stimulation of an antigen-specific immune response against
a tumor antigen.
Non-limiting illustrative examples of cancers which could be potentially treated according
to the teachings of the present invention include bile duct cancer, brain cancer,
breast cancer, cervical cancer, choriocarcinoma, colon cancer, endometrial cancer,
esophageal cancer, stomach cancer, intraepithelial neoplasias, lymphomas, liver cancer,
lung cancer (e.g., small and non-small cell lung cancer), melanoma, neuroblastomas,
mouth cancer, ovarian cancer, pancreatic cancer, prostate cancer, rectal cancer, sarcomas,
skin cancer, testicular cancer, thyroid cancer and renal cancer, as well as other
carcinomas and sarcomas.
A person skilled in the art can select tumor antigens or antigenic determinants for
the treatment of cancers in view of the state of the art [Renkvist et al., Cancer Immunol. Immunother. 50:3-15 (2001)], said antigens and antigenic determinants being included within the scope of the
present invention. Representative examples of said antigens or antigenic determinants
include: Her2 (breast cancer); GD2 (neuroblastoma); EGF-R (malignant glioblastoma);
CEA (medullary thyroid cancer); CD52 (leukemia); human melanoma gp100 protein; human
melanoma melan-A/MART-1 protein; tyrosinase; NA17-A nt protein; MAGE-3 protein; p53
protein; HPV16E7 protein; and antigenic fragments of said peptides or proteins.
■ Peptides or proteins capable of (suitable or designed for) inducing an immune response
against an allergen.
As it is used in this description, the term "allergen" relates to a peptide or protein
to which a subject is sensitive and causes an immune reaction, for example, allergen
extracts of pollens, allergen extracts of insects, allergen extracts of food or food
products, components present in saliva, insect claws or stings which induce a sensitivity
reaction in a subject, components present in plants which induce a sensitivity reaction
in a subject, etc. Non-limiting illustrative examples of allergens include protein
extracts of pollens, e.g., of Lolium perenne, Poa pratense, Phleum pratense, Cynodon dactylon, Festuca pratensis,
Dactylis glomerata, Secale cereale, Hordeum vulgare, Avena sativa, Triticum sativa,
Artemisia vulgaris, Chenopodium album, Plantago lanceolata, Taraxacum vulgare, Parietaria
judaica, Salsola kali, Urtica dioica, Olea europea, Platanus sp., Cupressus sp., etc.; protein extracts of insects, e.g., of Dermatophagoides pteronyssinus, Dermatophagoides farinae, Acarus siro, Blomia tropicalis,
Euroglyphus maynei, Glyciphagus domesticus, Lepidoglyphus destructor, Tyrophagus putrescentiae, etc.; protein extracts of fungi or of animal dander, e.g., Penicillium sp., Alternaria alternata, Cladosporium herbarum, dog dander, cat dander, horse dander, etc.; protein extracts of food or food products,
etc.
■ Peptides or proteins capable of (suitable or designed for) inducing a improved response
against an autoantigen. As it is used herein, the term "autoantigen" relates to peptides or proteins encoded
by the DNA of the subject and products generated by proteins or RNA encoded by the
DNA of the subject. Examples of autoantigens are described in WO 02/56905.
[0037] The heterologous polypeptide of interest is encoded by a polynucleotide which, in
turn, can form part of a gene construct. Said polynucleotide or gene construct comprising
it can be integrated in the genome of the bacterium of the invention, such that it
is endogenously expressed and replicated, or it can be comprised in a vector or plasmid,
such that it can be replicated and expressed independently of the genome of the bacterium
of the invention. In the event that said polynucleotide or gene construct is to be
inserted in the genome of the bacterium of the invention, said insertion is commonly
performed by means of gene recombination techniques well known in the state of the
art.
[0039] As it is used in this description, the expression "operatively bound" means that
the polypeptides encoded by the polynucleotide are expressed in the correct reading
frame under the control of the control or regulatory sequences of the expression.
Multiple expression cassettes can be used according to the present invention such
that they express any combination of viral, bacterial, parasitic genes, or synthetic
genes encoding all or fragments of any of the combinations of antigens previously
described. The expression cassettes can also be eukaryotic, such that they encode
a therapeutic agent for animal cells. For example, the expression cassette can encode
a tumor-specific antigen, transplant antigen or an autoimmune antigen or fragment
thereof.
[0040] Alternatively, the eukaryotic expression cassette can encode synthetic genes, encoding
a tumor-specific antigen, transplant antigen or an autoimmune antigen or fragment
thereof. Examples of tumor-specific antigens include TAG-72 and CEA prostate-specific
antigen, MAGE-1 and tyrosinase. Examples of transplant antigens include but are not
limited to the T cell CD3 receptor. Likewise, the eukaryotic expression cassettes
can encode immunoregulatory molecules. Said molecules include but are not limited
to growth factors and cytokines such as IL-2, IL-4, L-5, IL-6, IL-10, IL-12 or IFN-γ.
[0041] Control sequences are sequences which control and regulate the transcription and,
where appropriate, the translation of messenger RNA into the heterologous polynucleotide
of interest. Said control sequences include promoter sequences, sequences encoding
transcriptional regulators, ribosome binding sequences (RBS) and/or transcription
terminator sequences; and can be functional in prokaryotic cells and organisms, such
as for example, bacteria, and/or can be functional in eukaryotic cells and organisms,
such as for example, insect cells, plant cells, mammal cells, etc.
[0042] Advantageously, said gene construct furthermore comprises a marker or gene encoding
a motif or a phenotype which allows selecting the host cell transformed with said
construct.
[0043] Said gene construct can be inserted in a suitable vector, hereinafter vector of the
invention, such as a plasmid. Therefore, said plasmid comprises the polynucleotide
encoding the heterologous polypeptide of interest or the gene construct comprising
said polynucleotide. The choice of the vector will depend on the host cell in which
it will be subsequently introduced. By way of illustration, the plasmid in which said
polynucleotide or gene construct is introduced can be a plasmid which, upon being
introduced in a host cell, is integrated or not in the genome of said cell. Obtaining
said vector/plasmid can be performed by conventional methods known by persons skilled
in the art [Sambrook
et al., 2001, cited above]. Said recombinant vector/plasmid is a vector useful for transforming
non-invasive bacteria. As has been previously mentioned, the vector of the invention
can be a plasmid which is preferably a circular DNA molecule which can be replicated
independently of the genome of the cell. Said plasmid can additionally comprise antibiotic
resistance genes to select those cells which have incorporated the plasmid, a promoter,
generally viral, a transcription terminator and other elements widely known by the
person skilled in the art.
[0044] In another aspect, the invention relates to a pharmaceutical composition, hereinafter,
pharmaceutical composition of the invention, comprising the bacterium of the invention
and a pharmaceutically acceptable vehicle. Generally, the dose of bacteria of the
invention to be used in the pharmaceutical composition of the invention will vary
between 10
3 and 10
11 cfu (colony forming units), more preferably between 10
5 and 10
9 cfu.
[0045] Additionally, the pharmaceutical composition of the invention can contain an adjuvant
for the purpose of increasing the protective immune response against the antigen or
antigens which are administered to the subject.
[0046] The term "subject" relates to a member of a mammal animal species and includes but
is not limited to a domestic animal, a primate and a human; the subject is preferably
a male or female human being of any race or age.
[0047] The dose of the pharmaceutical composition of the invention which will be administered
to the subject will depend on many factors, including the characteristics of the bacterium
of the invention used in the preparation of the pharmaceutical composition, the clinical
condition of the subject, the disease to be treated, etc. For its administration to
the subject, the pharmaceutical composition of the invention will include pharmaceutical
acceptable carriers and excipients depending on the selected pharmaceutical dosage
form and on the chosen administration route. By way of a non-limiting illustration,
the pharmaceutical composition of the invention can be administered in the form of
a suspension, etc., suitable for its administration through any suitable administration
route, for example, by parenteral route, oral route, etc.
[0049] Due to the presence of ACT, the bacterium of the invention can move through the plasma
membrane of a eukaryotic cell and transfer plasmid DNA to said cell. If a polynucleotide
encoding a heterologous polypeptide of interest (as has been previously defined) has
been introduced previously (for example, by genetic manipulation) in said plasmid
DNA, then the bacterium of the invention is useful for releasing or introducing molecules
of therapeutic interest in the interior of the eukaryotic cell.
[0050] Therefore, in one aspect the present invention is aimed at the use of the bacterium
of the invention as a medicament.
[0051] In another aspect, the invention relates to the use of the bacterium of the invention
for gene therapy.
[0052] Taking advantage of the property of the bacterium of the invention of being internalized
in eukaryotic cells, the bacterium of the invention can be used as a tool to facilitate
genetic vaccination, i.e., the use of the bacterium of the invention to transport
DNA encoding the heterologous polypeptides of interest (protein antigens, toxins or
enzymes) capable of triggering both humoral and cellular immune responses.
[0053] Therefore, in another aspect, the invention relates to the use of the bacterium of
the invention in the preparation of a vaccine, hereinafter, vaccine of the invention.
[0054] The vaccines can be prepared as injectable vaccines either as liquid solutions or
as suspensions; solid forms suitable for dissolution or suspension in liquid before
the injection can also be prepared. In the event that the bacterium of the invention
is to remain alive, the preparation of the vaccine with the components suitable for
assuring the survival of the bacterium of the invention has to be taken into account.
[0055] Thus, the vaccine of the invention can be parenterally administered by means of injection
both subcutaneously and intramuscularly.
[0056] In addition, the vaccine of the invention can contain an adjuvant which aids to enhance
the immune response. Processes for achieving a coadjuvant effect for the vaccine include
(i) the use of agents such as aluminum (alum) phosphate or hydroxide, commonly used
as a solution of 0.05 to 0.1% phosphate buffer saline, (ii) mixture with synthetic
sugar polymers (Carbopol) used as 0.25% solution and (iii) aggregation of the protein
in the vaccine by means of heat treatment with temperatures varying between 70°C and
101°C for periods of 30 seconds and 2 minutes respectively. Other possibilities involve
the use of immunomodulatory substances such as lymphokines (for example, INF-γ, IL-2
and IL-12) or synthetic INF-γ inducers such as poly I:C in combination with the previously
mentioned coadjuvants. Virtually any adjuvant that can be administered by the chosen
administration route can be used.
[0057] The vaccine provided by this invention can contain one or more heterologous polypeptides
of interest. In a particular embodiment, said vaccine contains a single heterologous
polypeptide of interest. In another particular embodiment, said vaccine contains two
or more different heterologous polypeptides of interest.
[0058] The amount of antigen in each dose of vaccine is selected as an amount which induces
an immunoprotective response without important adverse side effects in typical vaccines.
Such amount will vary depending on the specific immunogens used.
[0059] In a particular embodiment, the use of the bacterium of the invention is aimed at
the preparation of a vaccine for an immunization process by means of bactofection.
[0060] In another particular embodiment, the use of the bacterium of the invention is aimed
at the preparation of a vaccine for an immunization process by means of an antigen-presenting
bacterial system.
[0061] The bacterium of the invention can be obtained by any method known by the person
skilled in the art, such as for example, the incubation of the non-invasive bacterium
with ACT, or a functionally equivalent variant thereof, or the transformation of the
non-invasive bacterium with the polynucleotide encoding ACT, or a functionally equivalent
variant thereof.
[0062] Therefore, in another aspect, the invention relates to a process for obtaining the
bacterium of the invention, hereinafter process of the invention, comprising incubating
a non-invasive bacterium with an ACT, or a functionally equivalent variant thereof;
or alternatively, transforming a non-invasive bacterium with a polynucleotide encoding
the ACT, or a functionally equivalent variant thereof.
[0063] In a particular embodiment of the process of the invention, the ACT has the amino
acid sequence shown in SEQ ID NO: 1.
[0064] In a still more particular embodiment, the ACT used in the process of the invention
comprises the export signal for the specific machinery for secreting said toxin.
[0065] As has been previously explained, the inventors of the present invention have found
that, when said ACT is bound to the outer membrane of a non-invasive bacterium, said
non-invasive bacterium can be internalized and invade a eukaryotic cell.
[0066] Therefore, in another aspect, the present invention relates to a method, hereinafter
method of the invention, for inducing the internalization of non-invasive bacteria
comprising:
- (a) incubating a non-invasive bacterium in the presence of an ACT, or of a functionally
equivalent variant thereof, or transforming a non-invasive bacterium with a polynucleotide
encoding an ACT, or a functionally variant thereof, and
- (b) contacting the bacterium obtained in paragraph (a) with a eukaryotic cell culture.
[0067] In a particular embodiment of the method of the invention, the ACT has the amino
acid sequence shown in SEQ ID NO: 1.
[0068] Additionally, in another particular embodiment, the bacterium of the method of the
invention comprises
- (i) a polynucleotide encoding a heterologous polypeptide of interest, or
- (ii) a gene construct comprising a polynucleotide according to (i), or
- (iii) a plasmid comprising a gene construct according to (ii) or
- (iv) a heterologous polypeptide of interest.
[0069] The following example illustrates the invention and must not be considered as limiting
the scope thereof.
EXAMPLE 1
Internalization of non-invasive bacteria in eukaryotic cells mediated by adenylate
cyclase toxin (ACT)
I. Materials and Methods
1.1 Obtaining and purification of ACT
[0070] ACT was produced in XL1-blue
E. coli cells (Stratagene) transformed with plasmid pT7CACT1 (
Martin et al., 2004. J. Bacteriol 186:3760-3765). The cell cultures (500 ml) in exponential phase were induced with 1 mM isopropyl-β-D-thio-galactoside
(IPTG) for 3 hours. Then, the cells were sonicated and the inclusion bodies were extracted
with 8 M urea, 50 mM Tris-HCl, pH 8 and 0.2 mM CaCl
2. The proteins were purified in successive ion exchange chromatographies in DEAE-Sepharose
and Phenyl-Sepharose columns (Amersham Pharmacia Biotech) according to a known protocol
(
Sakamoto et al., 1992. JBC 267:13598-13602). In the final step, the proteins were flowed in 8 M urea, 50 mM Tris-HCl pH 8 and
frozen at -20°C until their use.
1.2 Anchorage/adsorption of ACT to the bacterial membrane
[0071] The bacteria (
E. coli) were grown in LB medium (Luria-Bertoni medium) for 12 hours. Then, they were centrifuged
at 10,000 r.p.m. for 5 minutes and resuspended in buffer (20 mM Tris-HCl, 150 mM NaCl,
10 mM CaCl
2, pH 8) at an approximate concentration of 10
8 bacteria/ml. 20 µg/ml of ACT were added to the bacterial suspension and the mixture
was incubated at 37°C for 1 hour under constant stirring. In order to eliminate the
ACT not bound to the bacteria, the suspension was centrifuged at 4,000 r.p.m. for
5 minutes and washed 3 times with the same buffer. To increase the efficiency of the
binding of ACT to the bacterial surface, the process was repeated 5 times before the
incubation with eukaryotic cells.
1.3 Quantification of cAMP
[0072] The intoxication activity of ACT was determined by means of quantifying the intracellular
cAMP produced in Chinese hamster ovary (CHO) cells (LGC Prochem). After the incubation
with ACT or with the bacteria coated with ACT, the CHO cells were homogenized in cold
acidified ethanol and incubated for 5 minutes at ambient temperature. Then, the samples
were centrifuged and the precipitates were washed with ethanol:water (2:1 v:v). The
obtained supernatants were evaporated and the resulting pellets were resuspended in
Tris-HCl/EDTA buffer to determine the cAMP by radioimmunoassay according to the manufacturer's
instructions (Amersham Biosciences).
1.4 Assays of polymerization with actin-pyrene
[0073] The polymerization of G-actin [actin in globular form (G)] was determined by means
of the fluorescence increase produced in the polymerization of the actin labeled with
pyrene. The fluorescence was spectrofluorimetrically followed (365 nm excitation,
395 nm emission, 2.5 nm slits) in a FluoroMax-3 spectrofluorimeter (Horiba). G-actin
labeled with pyrene and unlabeled G-actin were mixed in a 1:10 ratio in G-buffer (5
mM Tris-HCl pH 8.0, 0.1 mM ATP, 0.5 mM CaCl
2). The mixture was centrifuged at 150,000 g for 1 hour before its use. The polymerization
of G-actin was started by adding 0.02 volumes of 50x polymerization start buffer (100
mM MgCl
2, 50 mM ATP, 2.5 M KCl) and the fluorescence in the samples was determined for 30
minutes at 37°C and under stirring.
1.5 Fluoresce microscopy
[0074] CHO cells were cultured until reaching confluence in Permanox Lab-Tek chambers in
Dulbecco's modified essential medium (DMEM), supplemented with 10% (v/v) fetal bovine
serum, L-glutamine and penicillin/streptomycin. ACT or the bacteria coated with ACT
were added to the medium and co-incubated with CHO cells for 2 hours. Then, the cells
were washed in phosphate buffered saline (PBS) pH 7.4, fixed in 3.7% formaldehyde
and permeabilized in the presence of acetone for 3 minutes at -20°C.
[0075] To view the F-actin [actin in fibrous form (F)] and the DNA, the cells were stained
with Alexa Fluor®488 phalloidin (Molecular Probes) and DAPI (Molecular Probes), respectively.
Anti-ACT monoclonal primary (List Biological Laboratories, INC) and anti-mouse IgG
secondary (Cell Signall Technology) antibodies labeled with Texas red® (Molecular
Probes) were also used to detect the ACT bound to bacteria. The samples were viewed
with a fluorescence microscope (Axioplan2, Zeiss) coupled to a digital camera (Axiocam
NRc5, Zeiss). The images were processed with the Axovision 4 software.
1.6 Electron microscopy
[0076] For the preparation of the sections, the cells were grown until reaching confluence
in 75 cm
2 flasks in DMEM medium, supplemented with 10% (v/v) fetal bovine serum, L-glutamine
and penicillin/streptomycin. The bacteria incubated with ACT were added to the culture
medium and co-incubated for 2 hours. Then, the cells were washed with phosphate buffered
saline (PBS) pH 7.4, fixed in 2% glutaraldehyde and 0.1% tannic acid in 0.1 M sodium
cacodylate. After the post-fixing in 1% OsO
4, the samples were dehydrated and embedded in Polarbed 814 epoxy resin (BioRad).
[0078] The grids were examined in a Phillips CM100 transmission electron microscope at 80
kV.
1.7 Scanning electron microscope
[0079] The cells were grown until reaching sub-confluence in 13 mm round coverslips (Sarsted)
in DMEM medium, supplemented with 10% (v/v) fetal bovine serum, L-glutamine and penicillin/streptomycin.
The bacteria incubated with ACT were added to the culture medium and co-incubated
for 2 hours. The cells were washed with PBS pH 7.4, fixed in 2% glutaraldehyde in
0.1 M sodium cacodylate, post-fixed in 1% OsO
4, successively dehydrated in ethanol and dried to the critical point. After the coating
with gold, the samples were examined in a JSM-35C Jeol scanning microscope at 25 kV.
1.8 Dot blotting Assay
[0080] Different G-actin concentrations (0-50 µg) were carefully adsorbed on nitrocellulose
membranes in successive applications of 2 µl. The membranes, once dry, were blocked
for 3 hours with TBS supplemented with 5% BSA (bovine serum albumin). Then, they were
incubated for 1 hour with different ACT concentrations (0-20 µg) in Tris-HCl buffer
pH 8.0, 10 mM NaCl and 10 mM CaCl
2. The nitrocellulose membranes were washed three times with Tris-Buffered Saline Tween-20
(TBST), Tris-Buffered Saline (TBS) and 0.1% Tween and incubated with anti-ACT antibody
[Commercial anti-RTX monoclonal antibody (Ref. 94D, BIOLOGICAL LABORATORIES INC)]
for 1 hour at room temperature. After three new washings, the membranes incubated
with secondary antibodies and the resulting bands were viewed by phosphorimaging.
The experiments were repeated 3 times and the densitometric values are represented
as the mean ± SD (standard deviation).
1.9 Bacterial invasion assays
[0081] In order to study the bacterial invasion the previously described gentamicin protection
assay was used [Isberg, RR. and Falkow, SA. 1985. A single genetic locus encoded by
Yersinia pseudotuberculosis permits invasion of cultured animal cells by
Escherichia coli K-12.
Nature. Vol.317(6034):262-264]. CHO cells seeded 36 hours before the assay in 96-well plates were left to grow
until reaching confluence in DMEM medium with 10% fetal bovine serum. The cells were
washed with antibiotic-free medium and incubated in medium without serum for 2 hours
before the infection.
[0082] The CHO cells were infected with
E. coli coated with ACT in a ratio of 100 bacteria per CHO cell. Then, the plates were incubated
between 2 and 8 hours at 37°C, were washed and, subsequently, incubated for 1 hour
in DMEM with gentamicin at a final concentration of 25 µg/ml to kill the extracellular
bacteria. After 3 new washings with PBS, the cells were lysed in PBS with 0.1% triton
X-100. The cell lysates were seeded in LB agar plates and the number of internalized
bacteria was determined by counting colony forming units (cfu) after 24 hours of incubation
at 37°C.
II. Results
2.1 Effect of ACT on the intracellular formation of cAMP in CHO cells
[0083] The capacity of ACT to intoxicate cells by means of increasing the intracellular
cAMP levels was studied at high and low free ACT concentrations in the incubation
medium. The addition of 20 µg/ml of ACT significantly increased the intracellular
cAMP levels after 2 hours of incubation. These results coincide with previous studies
in which it is demonstrated that ACT is capable of binding to and intoxicating different
types of eukaryotic cells (Figure 1). Furthermore, the viability of said cells was
affected and it was also observed that morphological changes appeared in the cell
periphery such as the appearance of structures similar to pseudopodia. At low free
ACT concentrations (2 µg/ml) neither the cell viability nor the intracellular cAMP
levels were affected; however, morphological changes were also observed in the cells,
although not as pronounced as and in the cells treated with high ACT concentrations.
When CHO cells were co-incubated with the bacteria coated with ACT (20 µg/ml) results
similar to those produced by the free ACT at low concentrations (2 µg/ml) were obtained
(Figure 1). Likewise, the quantification of ACT bound to bacteria by means of Western-blot
revealed that the amount of ACT bound to the outer membrane of the bacteria is 0.55
µg. Therefore, the structural modification of CHO cells is not caused by the alteration
of the intracellular cAMP levels. These results suggest that the ACT could have a
new activity responsible for the modifications observed in the morphology of CHO cells.
2.2 Effect of ACT on the cytoskeleton of CHO cells
[0084] In order to determine if the morphological modifications induced by ACT directly
affected the cytoskeleton, actin fibers were viewed with Alexa Fluor®488 phalloidin
once the treatments both with soluble ACT and with ACT bound to bacteria had ended.
Unlike the control cells in which a very structured cytoskeleton was observed (Figure
2A), the treatment with free ACT at high concentrations resulted in a disorganization
of the actin fibers. Furthermore, an accumulation of F-actin at the plasma membrane
level was observed, as well as the formation of spicules or structures similar to
pseudopodia (Figure 2B). The free ACT at low concentrations was also capable of inducing
the formation of protrusions in the cell surface without drastically modifying the
architecture of the cytoskeleton (Figure 2C). The formation of these structures similar
to pseudopodia was also induced in CHO cells when co-incubated with the bacteria coated
with ACT (Figure 2D). Similar effects on the cell cytoskeleton induced by pathogenic
invasive bacteria such as
Listeria or
Salmonella have been previously described.
[0085] It has been previously demonstrated that
B. pertussis is capable of invading epithelial cells and this effect has mainly been attributed
to the filamentous hemagglutinin (FHA) associated with the bacterial membrane.
2.3 Effect of Cya associated with the E. coli membrane in cell invasion
[0086] In order to prove if the ACT confers to the bacteria the capacity of invasion, CHO
cells co-incubated with
E. coli coated with ACT (20 µg/ml) were examined by electron microscopy. In the scanning
electron microscope photos (Figure 3) it was observed how the CHO cells emitted prolongations
similar to pseudopodia which strongly involved the bacteria coated with the ACT. In
the transmission electron microscopy sections, different stages of the process which
end with the internalization of the bacterium in the cell cytoplasm were observed.
Thus, in a first moment, the contact of the bacterium with the cell was observed by
means of a small prolongation which starts from the CHO cell (Figure 4A). In a more
advanced step, a strong contact was established between the membranes of the bacteria
and the membranes of the CHO cells (Figure 4B). Subsequently, the cell almost completely
surrounded the bacterium similarly to phagocytosis (Figure 4C), and, finally, the
bacteria inside the cell cytoplasm in structures similar to phagosomes could be observed
(Figure 4D).
2.4 Interaction of ACT with G-actin
[0087] In order to prove if ACT has the capacity to bind to actin and confirm that the effects
caused in the cytoskeleton are exerted by ACT, the capacity of ACT to bind to actin
was studied by the dot blotting technique. In Figure 5 it can be verified that ACT
was capable of interacting directly with G-actin previously immobilized in a nitrocellulose
membrane. The negative results of binding to BSA confirm that the binding to actin
is specific.
2.5 Polymerization of actin-G induced by ACT
[0088] Below, the possibility that ACT could have a G-actin polymerizing effect was studied.
To that end, control experiments of polymerization of G-actin labeled with pyrene
were conducted. The addition of polymerization initiation buffer to the solution with
G-actin caused a quick polymerization of the actin. This reaction was determined by
the increase of the fluorescence emitted by pyrene when the actin polymerized. Then
the effect of the polymerization of ACT was verified at different concentrations on
G-actin. As can be seen in Figure 6, toxin causes a quick polymerizing effect which
was furthermore dependent on the ACT concentration.
[0089] In order to prove that the effect exerted by the ACT was not due to an unspecific
aggregation of the proteins, aliquots of the assays of polymerization were taken after
30 minutes and analyzed by negative staining in the electron microscope. The obtained
results reveal the formation of long actin filaments in the preparations containing
ACT (Figure 7).
[0090] In order to prove if the toxin associated with the membrane of the bacteria preserved
this actin polymerizing property, the bacteria coated with ACT were incubated with
G-actin. After incubating for 2 hours, Alexa Fluor®488 phalloidin was added to fix
F-actin and the sample was analyzed in the fluorescence microscope. In the control
bacteria (
E. coli without ACT) polymerization of actin was not found whereas in the assays performed
with
E. coli coated with ACT large halos of F-actin surrounding the bacteria were found (Figure
8). These experiments clearly show that ACT adhered to the bacterium preserves the
G-actin polymerizing capacity observed in the in vitro polymerization experiments.
[0091] The results of this Example reveal that ACT induces a direct G-actin polymerization
even when it remains associated with the membrane of the bacteria. This new function
of the toxin would be responsible for the internalization of the bacteria coated with
ACT in non-phagocytic cells.
III. Conclusion