Technical Field
[0001] Oncolytic viruses are a class of novel therapeutic agents used for the treatment
of cancer that have the unique property of tumor-dependent self-perpetuation (
HERMISTON. A demand for next-generation oncolytic adenoviruses. Current opinion in
molecular therapeutics. 2006, vol.8, no.4, p.322-30.). Oncolytic viruses are capable of selective replication in malignant cells and
therefore offer levels of potency and specificity that are potentially far higher
than conventional treatments for cancer (
FISHER. Striking out at disseminated metastases: the systemic delivery of oncolytic
viruses. Current opinion in molecular therapeutics. 2006, vol.8, no.4, p.301-13.). The benefit of using these viruses is that as they replicate, they lyse their
host cells. Cancer cells are ideal hosts for many viruses because they have the antiviral
interferon pathway inactivated or have mutated tumour suppressor genes that enable
viral replication to proceed unhindered (
CHERNAJOVSKY, et at. Fighting cancer with oncolytic viruses. British medical journal.
2006, vol.332, no.7534, p.170-2.).
[0002] Some viruses are naturally able to selectively replicate in tumoral cells but oncolytic
viruses can also be obtained by modifying naturally occurring viruses. For this purpose,
the main strategies used currently to modify the viruses include: functional deletions
in essential viral genes; tumor- or tissue-specific promoters used to control the
expression of these viral genes; and tropism modification to redirect adenovirus to
the cancer cell surface. In the near future, oncolytic adenoviruses need to be optimized
to fully realize their potential as critical anticancer tools and, thus, improve the
prognosis for patients with malignant gliomas (
JIANG, et al. Oncolytic adenoviruses as antiglioma agents. Expert review of anticancer
therapy. 2006, vol.6, no.5, p.697-708.).
[0003] For example, ONYX-015, an adenovirus modified selectively to replicate in and kill
cells that harbor p53 mutations, is under development by Onyx Pharmaceuticals for
the potential treatment of various solid tumors, including head and neck, gastrointestinal
and pancreatic tumors. It is a recombinant adenovirus that carries a loss-of-function
mutation at the E1 B locus, the product of which is a 55 kDa protein that binds to
and inactivates the p53 tumor suppressor protein. Thus, the ONYX-015 adenovirus is
supposed to leave normal cells unaffected. Mutations in the p53 tumor suppressor gene
are the most common type of genetic abnormality in cancer, occurring in more than
half of all major cancer types. Thus, these cells are susceptible to the virus, which
will readily replicate and cause cell death. ONYX-015 is in ongoing phase III trials
for the treatment of recurrent head and neck cancer, phase II trials for colorectal,
ovary, pancreas and mouth tumors, and phase I trials for digestive disease, esophagus
and liver tumors (
COHEN, et al. ONYX-015. Onyx Pharmaceuticals. Current opinion in investigational drugs.
2001, vol.2, no.12, p.1770-5.).
[0004] Naturally oncolytic viruses are replication-competent viruses that have an innate
ability to selectively infect and kill tumor cells. Despite being used in the original
attempts to treat cancer with live viruses five decades ago, interest in naturally
oncolytic viruses has lagged behind the support for engineered adenoviruses and herpesviruses
as cancer therapeutics. Recently, however, there has been renewed interest in the
high potency and selectivity of these naturally occurring agents (
ROBERTS, et al. Naturally oncolytic viruses. Current opinion in molecular therapeutics.
2006, vol.8, no.4, p.314-21.).
[0005] Among naturally oncolytic viruses, Vaccinia viruses (a Poxviridae) possess many of
the key attributes necessary for an ideal viral backbone for use in oncolytic virotherapy.
These include a short lifecycle, with rapid cell-to-cell spread. strong lytic ability,
a large cloning capacity and well-defined molecular biology. In addition, although
capable of replicating in human cells, they are not considered a natural health problem
and are especially well characterized having been delivered to millions of individuals
during the campaign to eradicate smallpox. Early clinical results using either vaccine
strains or genetically modified vaccinia strains have demonstrated antitumor effects
(
THORNE, et al. Vaccinia virus and oncolytic virotherapy of cancer. Current opinion
in molecular therapeutics. 2005, vol.7, no.4, p.359-65..
Technical Problem
[0007] The injection of high doses of Poxviruses necessary to achieve an antitumoral effect
raised toxicity issues. The majority of adverse events are minor, adverse reactions
that are usually linked to Vaccinia virus are self-limited and include fever, headache,
fatigue, myalgia, chills, local skin reactions, nonspecific rashes, erythema multiforme,
lymphadenopathy, and pain at the vaccination site. Other reactions might require additional
therapies (e.g., VIG, a first-line therapy-and cidofovir, a second-line therapy).
Adverse reactions that might require further evaluation or therapy include inadvertent
inoculation, generalized vaccinia (GV), eczema vaccinatum (EV), progressive vaccinia
(PV), postvaccinial central nervous system disease, and fetal vaccinia (
CONO, et al. Smallpox vaccination and adverse reactions. Guidance for clinicians.
MMWR. Recommendations and reports : Morbidity and mortality weekly report. Recommendations
and reports / Centers for Disease Control. 2003, vol.52, no.RR-4, p.1-28.).
[0008] Thus, there is need for safer Poxviruses with an oncolytic activity as good as to
their natural counterparts.
Background Art
[0009] US 5364773 (VIROGENETICS CORPORATION (TROY, NY)) 15/11/1994 describes a modified recombinant
poxvirus, more particularly a vaccinia virus having inactivated nonessential virus-encoded
encoded genetic functions so that the recombinant poxvirus has attenuated virulence
and enhanced safety. In particular, the genetic functions are inactivated by deleting
an open reading frame encoding a virulence factor or by insertional inactivation of
an open reading frame encoding a virulence factor. More particularly, this patent
describes a vaccinia virus in which the open reading frame of for J2R, B13R+B14R,
A26L, A56R, C7L - K1 L, and I4L has been inactivated. This virus (NYVAC) can be engineered
as a vector for a foreign nucleic acid and used as a vaccine for inducing an immunological
response in a host animal. However, N YVAC is unable to efficiently replicate in most
mammalian cels and can not be used as an oncolytic virus (
XIANGZHI, et al. Vaccinia virus K1 L protein supports viral replication in human and
rabbit cells through a cell-type-specific set of its ankyrin repeat residues that
are distinct from its binding site for ACAP2. Journal of virology. 2006, vol.353,
no.1, p.220-233.).
[0010] WO 2004/014314 (KIRN DAVID (US)) 19/02/2004 describes an altered vaccinia virus that comprises one
or more mutations in its viral genome. Described mutations are in one or more of the
following classes of polypeptides: 1) interferon-modulating polypeptide; 2) complement
control polypeptide ; 3) TNF or chemokine-modulating polypeptide; 4) serine protease
inhibitor; 5) IL- Ip modulating polypeptide; 6) non-infectious EEV form polypeptides;
and, 7) viral polypeptide that act to inhibit release of infectious virus from cells
(anti-infectious virus form polypeptide). In addition, mutations in A41 L or C11 R
of vaccinia virus are also disclosed.
[0011] Vaccinia genome regions such as A34R, A41L, A53R, B5R, B7R, B8R, B13R, B15R, B18R,
B22R, B28R, B29R, CUR, E3L, K2L, N1L, vC12L, and vCKBP are more particularly described
in this application. Methods of the invention involve using any of the poxviruses
discussed herein. The inventors also disclose methods to treat cancer by administering
to the cancer cell or patient an effective amount of this altered vaccinia virus.
Disclosure of Invention
[0012] The inventors have surprisingly discovered that poxviruses comprising a defective
I4L and/or F4L gene have an improved safety profile but kept an equivalent oncolytic
activity (compared to their natural counterpart).
[0013] Herein disclosed is a poxvirus comprising a defective I4L and/or F4L gene with the
proviso that said poxvirus is not NYVAC. The present invention relates to an oncolytic
poxvirus for use in the treatment of a proliferative disease, rheumatoid arthritis
or osteoporosis, comprising a defective I4L and/or F4L gene.
[0014] As used throughout the entire application, the terms "a" and "an" are used in the
sense that they mean "at least one", "at least a first", "one or more" or "a plurality"
of the referenced components or steps, unless the context clearly dictates otherwise.
For example, the term "a cell" includes a plurality of cells, including mixtures thereof.
[0015] The term "and/or" wherever used herein includes the meaning of "and", "or" and "all
or any other combination of the elements connected by said term".
[0016] The term "about" or "approximately" as used herein means within 20%, preferably within
10%, and more preferably within 5% of a given value or range.
[0017] As used herein, the terms "comprising" and "comprise" are intended to mean that the
products, compositions and methods include the referenced components or steps, but
not excluding others. "Consisting essentially of" when used to define products, compositions
and methods, shall mean excluding other components or steps of any essential significance.
Thus, a composition consisting essentially of the recited components would not exclude
trace contaminants and pharmaceutical acceptable carriers. "Consisting of" shall mean
excluding more than trace elements of other components or steps.
[0018] As used herein, the term "poxvirus comprising a defective gene" refers to a poxvirus
comprising a deletion, substitution or addition in one or more nucleic acid of the
defective gene, or any combination of these possibilities wherein said modifications
lead to the inability for the virus to produce a protein having the activity of the
protein produced by the unmodified gene. In a preferred embodiment of the invention,
a poxvirus comprising a defective gene refers to a poxvirus in which the whole gene
sequence has been deleted. Mutation can be made in a number of ways known to those
skilled in the art using recombinant techniques. Methods for modifying the genome
of a poxvirus are available in the art. For example the methods disclosed in
MCCART, et al. Systemic cancer therapy with a tumor selective vaccinia virus mutant
lacking thymidine kinase and vaccinia growth factor genes.. Cancer res.. 2001, no.61,
p.8751-57.,
KIM, et al. Systemic armed oncolytic ans immunologic therapy for cancer with JX-594,
a targeted poxvirus expressing GM-CSF. Molecular Therapeutic. 2006, no.14, p.361-70.,
WO 2004/014314 (KIRN DAVID (US)) 19/02/2004 and
US 5364773 (VIROGENETICS CORPORATION (TROY, NY)) 15/11/1994 can be used to produce the poxvirus
of the invention. The methods disclosed in the example of the present application
are particularly relevant to produce a poxvirus according to the invention. Sequences
of the genome of various poxviruses are available in the art, for example, the vaccinia
virus, cowpox virus, Canarypox virus, Ectromelia virus, Myxoma virus genomes are available
in Genbank (accession number NC_006998, NC_003663, NC_005309, NC_004105, NC_001132
respectively)
[0019] As used herein the term "poxvirus" refers to a virus belonging to the Poxviridae
family. According to a preferred embodiment, the poxvirus according to the invention
belongs to the Chordopoxvirinae subfamily, more preferably to the Orthopoxvirus genus
and even more preferably to the Vaccinia virus specie.
[0020] For example, Vaccinia virus strains Dairen I, IHD-J, L-IPV, LC16M8, LC16MO, Lister,
LIVP, Tashkent, WR 65-16, Wyeth, Ankara, Copenhagen, Tian Tan and WR can be used.
According to a particularly preferred embodiment, the poxvirus according to the invention
is a Vaccinia virus strains Copenhagen.
[0021] The poxvirus vaccinia contains a large duplex DNA genome (187 kilobase pairs) and
is a member of the only known family of DNA viruses that replicates in the cytoplasm
of infected cells. Because the infected cell must deliver large amounts of DNA precursors
to cytoplasmic replication sites, the virus encodes and expresses many enzymatic activities
required for DNA metabolism and synthesis, including ribonucleotide reductase and
deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase).
[0022] Ribonucleotide reductase (EC 1.17.4.1) catalyzes the reduction of ribonucleotides
to deoxyribonucleotides, a reaction that represents the first commited step in DNA
biosynthesis. The viral enzyme is similar in subunit structure to the mammalian enzyme,
being composed of two heterologous subunits, designed R1 and R2. The genes that encode
the viral ribonucleotide reductase subunits have been sequenced and localized to positions
on the vaccinia genome, separated by 35 kilobases (
SLABAUGH, et al. Journal of virology. 1988, vol.62, p.519-27.;
TENGELSEN, et al.. Virology. 1988, no.164, p.121-31. ;
SCHMITT, et al.. Journal of virology. 1988, no.62, p.1889-97.). The monomers of the vaccinia virus large subunit (designated R1, encoded by the
I4L gene) are 86-kDa polypeptides, and contain binding sites for nucleotide substrates
an allosteric effectors (
SLABAUGH, et al.. Journal of virology. 1984, no.52, p.507-14. ;
SLABAUGH, et al.. Journal of virology. 1984, no.52, p.501-6.). The small subunit (designated R2, encoded by the F4L gene) is a homodimer comprising
two 37-kDa polypeptides; each polypeptide contains an iron-stabilized protein-based
free radical that is required for catalysis (
HOWELL, et al.. Journal of Biological Chemistry. 1992, no.267, p.1705-11.). Sequences for the I4L and F4L genes and their locations in the genome of various
poxvirus are available in public databases, for example via accession number DQ437594,
DQ437593, DQ377804, AH015635, AY313847, AY313848, NC_003391, NC_003389, NC_003310,
M35027, AY243312, DQ011157, DQ011156, DQ011155, DQ011154, DQ011153, Y16780, X71982,
AF438165, U60315, AF410153, AF380138, U86916, L22579, NC_006998, DQ121394 and NC_008291.
[0023] The gene nomenclature used herein is that of Copenhagen vaccinia strain and is used
also for the homologous genes of other poxviridae unless otherwise indicated. However,
gene nomenclature may be different according to the pox strain. For information, correspondance
between Copenhagen and MVA genes can be found in Table I of ANTOINE.
Virology. 1998, no.244, p.365-396.
[0024] According to a preferred embodiment, the poxvirus of the invention further comprises
a defective J2R gene.
[0025] The J2R gene encodes a Thymidine kinase (TK) which form part of the salvage pathway
for pyrimidine deoxyribonucleotide synthesis. The reaction catalysed by TK involves
the transfer of a y-phosphoryl moiety from ATP to 2'deoxy-thymidine (dThd) to produce
thymidine 5'-monophosphate (dTMP). Vaccinia virus' TK is of type 2. Type 2 TKs have
a smaller polypeptide chain compared to type 1, being of ~25 KDa but form homotetramers.
They are sensitive to the feedback inhibitors dTDP or dTTP, which are generated at
the end of the metabolic pathway. Type 2 TKs have a much narrower substrate specificity
compared to type 1 TKs and only phosphorylate 2'deoxyuridine (dU) and/or dThd (
EL OMARI, et al. Structure of vaccinia virus thymidine kinase in complex with dTTP:
insights for drug design. BMC structural biology. 2006, no.6, p.22.).
[0026] Poxviruses defective for the J2R region and methods to obtain them are available
in the art. For example, the teaching of
MCCART, et al. Systemic cancer therapy with a tumor-selective vaccinia virus mutant
lacking thymidine kinase and vaccinia growth factor genes. cancer research. 2001,
vol.61, no.24, p.8751-7.,
PUHLMANN, et al. Vaccinia as a vector for tumor-directed gene therapy: biodistribution
of a thymidine kinase-deleted mutant. Cancer gene therapy. 2000, vol.7, no.1, p.66-73. ,
GNANT, et al. Systemic administration of a recombinant vaccinia virus expressing the
cytosine deaminase gene and subsequent treatment with 5-fluorocytosine leads to tumor-specific
gene expression and prolongation of survival in mice. Cancer Research. 1999, vol-59,
no.14, p.3396-403. can be used to produced a poxviruses deleted for the J2R region.
[0027] According to a preferred embodiment, the poxvirus of the invention further comprises
a defective F2L gene.
[0028] Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase, EC 3.6.1.23) catalyzes
the hydrolysis of dUTP to dUMP and pyrophosphate in the presence of Mg(2+) ions. dUTPase,
in removing dUTP from the dNTP pool and generating dUMP, is involved in both maintaining
the fidelity of DNA replication and in proviging the precursor for the production
of TMP by thymidylate synthase. Vaccinia dUTPase is a 15 kDa protein encoded by the
F2L gene (
MCGEOGH.. Nuclei Acids Research. 1990, no.18, p.4105-10. ;
BROYLES.. Virology. 1993, no. 195, p.863-5.). Sequence of the F2L gene of the vaccinia virus is available in genbank via accession
number M25392, sequences and locations of the F2L gene in various poxviruses genomes
are also available in genbank, for example, via accession number NC_006998, DQ121394,
NC_001611, AY689436, AY689437, NC_008291, DQ437594, DQ437593, AY313847, AY313848,
NC_006966, NC_005309, NC_003391, NC_003389, NC_001132, NC_003310, NC_002188, M35027,
AY243312, AF170726, DQ011157, DQ011156, DQ011155, DQ011154, DQ011153, X94355, Y16780,
AY318871, U94848, AF198100 and M34368.
[0029] According to a preferred embodiment, the poxvirus according to the invention further
comprises a nucleic acid of interest.
[0030] In a preferred embodiment, the nucleic acid of interest contains at least one sequence
of interest encoding a gene product which is a therapeutic molecule (i.e. a therapeutic
gene). A "therapeutic molecule" is one which has a pharmacological or protective activity
when administered appropriately to a patient, especially patient suffering from a
disease or illness condition or who should be protected against this disease or condition.
Such a pharmacological or protective activity is one which is expected to be related
to a beneficial effect on the course or a symptom of said disease or said condition.
When the skilled man selects in the course of the present invention a gene encoding
a therapeutic molecule, he generally relates his choice to results previously obtained
and can reasonably expect, without undue experiment other than practicing the invention
as claimed, to obtain such pharmacological property. According to the invention, the
sequence of interest can be homologous or heterologous to the target cells into which
it is introduced. Advantageously said sequence of interest encodes all or part of
a polypeptide, especially a therapeutic or prophylactic polypeptide giving a therapeutic
or prophylactic property. A polypeptide is understood to be any translational product
of a polynucleotide regardless of size, and whether glycosylated or not, and includes
peptides and proteins. Therapeutic polypeptides include as a primary example those
polypeptides that can compensate for defective or deficient proteins in an animal
or human organism, or those that act through toxic effects to limit or remove harmful
cells from the body. They can also be immunity conferring polypeptides which act as
endogenous antigen to provoke a humoral or cellular response, or both.
[0031] Examples of polypeptides encoded by a therapeutic gene include genes coding for a
cytokine (alpha, beta or gamma interferon, interleukin, in particular IL-2, IL-6,
IL-10 or IL-12, a tumor necrosis factor (TNF), a colony stimulating factor GM-CSF,
C-CSF, M-CSF...), a immunostimulatory polypeptide (B7.1, B7.2 and the like), a coagulation
factor (FVIII, FIX...), a growth factor (Transforming Growth Factor TGF, Fibroblast
Growth Factor FGF and the like), an enzyme (urease, renin, thrombin, metalloproteinase,
nitric oxide synthase NOS, SOD, catalase...), an enzyme inhibitor (alpha1-antitrypsin,
antithrombin III, viral protease inhibitor, plasminogen activator inhibitor PAI-1),
the CFTR (Cystic Fibrosis Transmembrane Conductance Regulator) protein, insulin, dystrophin,
a MHC antigen of class I or II, a polypeptide that can modulate/regulate expression
of cellular genes, a polypeptide capable of inhibiting a bacterial, parasitic or viral
infection or its development (antigenic polypeptides, antigenic epitopes, transdominant
variants inhibiting the action of a native protein by competition....), an apoptosis
inducer or inhibitor (Bax, Bcl2, BclX...), a cytostatic agent (p21, p 16, Rb...),
an apolipoprotein (ApoAl, ApoAIV, ApoE...), an inhibitor of angiogenesis (angiostatin,
endostatin...), an angiogenic polypeptide (family of Vascular Endothelial Growth Factors
VEGF, FGF family, CCN family including CTGF, Cyr61 and Nov), an oxygen radical scaveyer,
a polypeptide having an anti-tumor effect, an antibody, a toxin, an immunotoxin and
a marker (beta-galactosidase, luciferase....) or any other genes of interest that
are recognized in the art as being useful for the treatment or prevention of a clinical
condition.
[0032] Suitable anti-tumor genes include but are not limited to those encoding tumor suppressor
genes (e.g. Rb, p53, DCC, NF-1, Wilm's tumor, NM23, BRUSH-1, p16, p21, p56, p73 as
well as their repective mutants), suicide gene products, antibodies, polypeptides
inhibiting cellular division or transduction signals.
[0033] According to a particularly preferred embodiment, the poxvirus of the invention further
comprises a suicide gene.
[0034] Suicide gene refers to a gene coding a protein able to convert a precursor of a drug
into a cytoxic compound.
[0035] Suicide genes comprise but are not limited to genes coding protein having a cytosine
deaminase activity, a thymidine kinase activity, an uracil phosphoribosyl transferase
activity, a purine nucleoside phosphorylase activity and/or a thymidylate kinase activity.
[0036] Examples of suicide genes and corresponding precursors of a drug comprising one nucleobase
moiety are disclosed in the following table :
Table 1
| Suicide gene |
predrug |
| Thymidine Kinase |
Ganciclovir; |
| |
Ganciclovir elaidic acid ester; |
| |
penciclovir; |
| |
Acyclovir; |
| |
Valacyclovir; |
| |
(E)-5-(2-bromovinyl)-2'-deoxyuridine; |
| |
zidovudine; |
| |
2'-Exo-methanocarbathymidine |
| Cytosine deaminase |
5-Fluorocytosine |
| Purine nucleoside phosphorylase |
6-Methylpurine deoxyriboside; Fludarabine |
| uracil phosphoribosyl transferase |
5-Fluorocytosine; 5-Fluorouracil |
| thymidylate kinase. |
Azidothymidine |
[0037] According to a preferred embodiment of the invention, the suicide gene codes a protein
having at least a CDase activity. CDase is involved in the pyrimidine metabolic pathway
by which exogenous cytosine is transformed into uracil by means of a hydrolytic deamination.
While CDase activities have been demonstrated in prokaryotes and lower eukaryotes
(
JUND, et al.. Journal of Bacteriology. 1970, no.102, p.607-15. ;
BECK, et al.. Journal of Bacteriology. 1972, no.110, p.219-28. ;
HOEPRICH, etal.. Journal of Infectious Diseases. 1974, no.130, p.112-18. ;
ESDERS, et al.. J. biol. chem.. 1985, no.260, p.3915-22.), they are not present in mammals (
KOECHLIN, et al.. Biochemical pharmacology. 1966, no.15, p.435-46. ;
POLAK, et al.. Chemotherapy. 1976, no.22, p.137-53.).
[0038] CDase also deaminates an analogue of cytosine, i.e. 5-fluorocytosine (5-FC), thereby
forming 5-fluorouracil (5-FU), which is a compound which is highly cytotoxic when
it is converted into 5-fluoro-UMP (5-FUMP). Cells which lack CDase activity, either
because of a mutation which inactivates the gene encoding the enzyme or because they
are naturally deficient in this enzyme, as are mammalian cells, are resistant to 5-FC
(
JUND, et al.. Journal of Bacteriology. 1970, no.102, p.607-15. ;
KILLSTRUP, et al.. Journal of Bacteriology. 1989, no.171, p.2124-2127.). By contrast, mammalian cells into which the sequences encoding CDase activity
were transferred became sensitive to 5-FC (
HUBER, et al.. Cancer Research. 1993, no.53, p.4619-4626. ;
MULLEN, et al.. Proceedings of the National Academy of Sciences of the United States
of America. 1992, no.89, p.33-37. ;
WO 93/01281 (US HEALTH)). In addition, the neighboring, untransformed cells also become sensitive
to 5-FC (
HUBER, et al.. Proceedings of the National Academy of Sciences of the United States
of America. 1994, no.91, p.8302-6.). This phenomenon, which is termed a bystander effect, is due to the cells which
are expressing the CDase activity secreting 5-FU, which then intoxicates the neighboring
cells by straightforward diffusion across the plasma membrane. This property of 5-FU
in diffusing passively represents an advantage as compared with the tk/GCV reference
system, where the bystander effect requires there to be contact with the cells which
are expressing tk (
MESNIL, et al.. Proceedings of the National Academy of Sciences of the United States
of America. 1996, no.93, p.1831-35.). All the advantages which CDase offers within the context of gene therapy, in particular
anticancer gene therapy, can therefore be readily understood.
[0039] The
Saccharomyces cerevisiae (
S. cerevisiae) FCY1, Candida Albicans FCA1 and the E. coli codA genes, which respectively encode
the CDase of these two organisms, are known and their sequences have been published
(SEQ ID N°:4; SEQ ID N°:5; SEQ ID N°:6 respectively).
[0040] With this respect, according to a more preferred embodiment of the invention, the
gene coding a protein having a CDase activity is FCY1, FCA1 or CodA or an analogue
thereof. Analogues of these genes refers to a gene having an nucleic acid sequence
which have at least a degree of identity greater than 70%, advantageously greater
than 80%, preferably greater than 90%, and most preferably greater than 95% with the
nucleic acid sequence of the parent gene.
[0041] Patent
WO 2005/007857 discloses a gene coding a protein having an improved CDase activity. This polypeptides
derived from a native CDase by addition of an amino acid sequence. According to another
preferred embodiment of the invention, the protein having a CDase activity is a polypeptide
disclosed
WO 2005/007857 and more preferably the FCU1-8 polypeptide represented in the sequence identifier
SEQ ID N°:2 and analogues thereof.
[0042] In prokaryotes and lower eukaryotes, uracil is transformed into UMP by the action
of uracil phosphoribosyl transferase (UPRTase). This enzyme converts 5-FU into 5-FUMP.
According to another preferred embodiment of the invention, the suicide gene codes
a protein having an UPRTase activity.
[0043] The UPRTase in question may be of any origin, in particular of prokaryotic, fungal
or yeast origin. By way of illustration, the nucleic acid sequences encoding the UPRTases
from
E.
coli (
ANDERSEN, et al. Characterization of the upp gene encoding uracil phosphoribosyltransferase
of Escherichia coli K12. European Journal of Biochemistry. 1992, no.204, p.51-56.), from
Lactococcus lactis (
MARTINUSSEN, et al. Cloning and characterization of upp, a gene encoding uracil phosphoribosyltransferase
from Lactococcus lactis. Journal of Bacteriology. 1994, vol.176, no.21, p.6457-63.), from
Mycobacterium bovis (
KIM, et al. Complete sequence of the UPP gene encoding uracil phosphoribosyltransferase
from Mycobacterium bovis BCG. Biochemistry and molecular biology international. 1997,
vol.41, no.6, p.1117-24.) and from
Bacillus subtilis (
MARTINUSSEN, et al. Two genes encoding uracil phosphoribosyltransferase are present
in Bacillus subtilis. Journal of Bacteriology. 1995, vol. 177, no.1, p.271-4.) may be used in the context of the invention. However, it is most particularly preferred
to use a yeast UPRTase and in particular that encoded by the
S. cerevisiae FUR1 gene whose sequence disclosed in KERN, et al. The FUR1 gene of
Saccharomyces cerevisiae: cloning, structure and expression of wild-type and mutant alleles. (
Gene. 1990, vol.88, no.2, p.149-57.) is introduced here by way of reference. As a guide, the sequences of the genes
and those of the corresponding UPRTases may be found in the literature and the specialist
databanks (SWISSPROT, EMBL, Genbank, Medline and the like).
[0044] Application
EP 0998568 A describes an
FUR1 gene lacking 105 nucleotides in 5' of the coding part allowing the synthesis of a
UPRTase from which the 35 first residues have been deleted at the N-terminal position
and starting with the methionine at position 36 in the native protein. The product
of expression of the mutant gene, designated
FUR1Δ
105, is capable of complementing an
fur1 mutant of
S. cerevisiae. In addition, the truncated mutant exhibits a higher UPRTase activity than that of
the native enzyme. Thus, according to a particularly advantageous embodiment of the
invention, the suicide gene codes a deletion mutant of a native UPRTase. The deletion
is preferably located in the N-terminal region of the original UPRTase. It may be
complete (affecting all the residues of said N-terminal region) or partial (affecting
one or more continuous or discontinuous residues in the primary structure). In general,
a polypeptide consists of N-terminal, central and C-terminal parts, each representing
about a third of the molecule. For example, since the
S.
cerevisiae UPRTase has 251 amino acids, its N-terminal part consists of the first 83 residues
starting with the so-called initiator methionine situated at the first position of
the native form. As for the
E.
coli UPRTase, its N-terminal part covers positions 1 to 69.
[0045] A preferred protein having an UPRTase activity comprises an amino acid sequence substantially
as represented in the sequence identifier SEQ ID N°: 1 of
EP 0998568 A , starting with the Met residue at position 1 and ending with the Val residue at
position 216. The term "substantially" refers to a degree of identity with said sequence
SEQ ID N°: 1
EP 0998568 A greater than 70%, advantageously greater than 80%, preferably greater than 90%, and
most preferably greater than 95%. More preferably still, it comprises the amino acid
sequence represented in the sequence identifier SEQ ID N°: 1
EP 0998568 A. As mentioned above, it may comprise additional mutations. There may be mentioned
in particular the substitution of the serine residue at position 2 (position 37 in
the native UPRTase) by an alanine residue.
[0046] According to another preferred embodiment of the invention, the suicide gene codes
a protein having at least one CDase and one UPRTase activity. Patent applications
WO 96/16183 and
EP 0998568 A describe the use of a fusion protein encoding an enzyme with two domains having the
CDase and UPRTase activities and demonstrate that the transfer of a hybrid gene
codA::upp or
FCY1::FUR1 or
FCY1::FUR1Δ
105 (i.e. FCU1) carried by an expression plasmid increases the sensitivity of the transfected B16
cells to 5-FC. According to a more preferred embodiment of the invention, the suicide
gene codes a polypeptide comprising an amino acid sequence substantially as represented
in the sequence identifier SEQ ID N°:3 (coda::upp), SEQ ID N°:1 (FCU1) or FCY1::FUR1.
The term "substantially" refers to a degree of identity with said sequence greater
than 70%, advantageously greater than 80%, preferably greater than 90%, and most preferably
greater than 95%. More preferably still, it comprises the amino acid sequence as represented
in the sequence identifier SEQ ID N°:3 (coda::upp), SEQ ID N°:1 (FCU1) or FCY1::FUR1.
As mentioned above, it may comprise additional mutations.
[0047] The nucleic acid sequences may be easily obtained by cloning, by PCR or by chemical
synthesis according to the conventional techniques in use. They may be native genes
or genes derived from the latter by mutation, deletion, substitution and/or addition
of one or more nucleotides. Moreover, their sequences are widely described in the
literature which can be consulted by persons skilled in the art.
[0048] Persons skilled in the art are capable of cloning the CDase or UPRTase sequences
from the published data and of carrying out possible mutations, of testing the enzymatic
activity of the mutant forms in an acellular or cellular system according to the prior
art technology or based on the protocol indicated in application
EP 0998568 A, and of fusing, in particular in phase, the polypeptides with CDase and UPRTase activity,
and consequently all or part of the corresponding genes.
[0049] According to a more preferred embodiment, the poxvirus of the invention further comprises
a nucleic acid sequence comprising a gene coding a permease.
[0050] Permease refers to transmembraneous protein involved in the transfer of a drug comprising
one nucleobase moiety, or a precursor thereof through the cell membrane.
[0051] Permease comprises but are limited to purine permease, cytosine permease and nucleoside
transporters.
[0052] According to a preferred embodiment of the invention, permease is a purine or a cytosine
permease of
S. Cerevisiae. The nucleobase transporters of
S. cerevisiae consist of the purine-cytosine permease, known as FCY2, and the uracil permease,
known as FUR4. The purine-cytosine permease, FCY2 mediates symport of protons and
adenine, guanine, hypoxanthine and cytosine across the yeast plasma membrane (Grenson
1969, Jund and Lacroute 1970, Polak and Grenson 1973, Chevallier et al. 1975, Hopkins
et al. 1988). FCY2 protein mediates also the transport of 5-fluorocytosine, an analogue
of cytosine (Grenson 1969, Jund and Lacroute 1970). FCY2 gene encodes a protein of
533 amino acids (58 kDa) initially predicted to have 10-12 transmembrane-spanning
domains (Weber et al. 1990), with nine now favoured (Ferreira et al. 1999). FCY2 exhibits
similar affinities for the purine nucleobases and cytosine (Brethes et al. 1992).
Uracil uptake into
S. cerevisiae is mediated by the uracil permease, FUR4 (Jund and Lacroute 1970, Jund et al. 1977).
FUR4 is a uracil-proton symporter (Hopkins et al. 1988) predicted to be a protein
of 633 amino acids (71.7 kDa) with 10 transmembrane domains and long cytoplasmic hydrophylic
N- and C-terminal tails (Jund et al. 1988, Gamier et al. 1996). FUR4 protein can also
mediates the transport of 5-fluorouracil, an analogue of uracil (Jund and Lacroute
1970).
[0053] Amino acid sequences of FCY2 and Fur4 are notably available in the swissprot database
(accession number P17064 and P05316 respectively). Preferably, permease has an amino
acid sequence chosen from the group comprising amino acid sequence SEQ ID NO:1 and
SEQ ID NO:2 as disclosed in patent application
WO 2006/048768.
[0054] With this respect, according to a preferred embodiment of the invention, the permease
is chosen from the group comprising FCY2 and Fur4 and analogues thereof. Analogues
of Fur4 and FCY2 refers to polypeptide having an amino acid sequence which have at
least a degree of identity greater than 70%, advantageously greater than 80%, preferably
greater than 90%, and most preferably greater than 95% with the amino acid sequence
of the parent protein as described here above and which retains the ability to transport
a drug comprising one nucleobase moiety through the cell membrane.
[0055] The one skilled in the art is able to choose the permease which will be associated
with the drug or the precursor of the drug comprising one nucleobase moiety. For example,
FCY2 and Fur4 are preferably associated with 5-Fluorocytosine (5-FC).
[0056] According to a more preferred embodiment, the poxvirus of the invention may further
comprise the elements necessary for the expression of the nucleic acid of interest.
[0057] According to a more preferred embodiment, the poxvirus of the invention may further
comprise the elements necessary for the expression of the nucleic acid sequence comprising
a gene coding a permease.
[0058] These elements necessary for the expression of the nucleic acid of interest and/or
the nucleic acid sequence comprising a gene coding a permease comprised the elements
required for transcription of said DNA into mRNA and, if necessary, for translation
of mRNA into polypeptide. Transcriptional promoters suitable for use in various vertebrate
systems are widely described in literature. For example, suitable promoters include
viral promoters like RSV, MPSV, SV40, CMV or 7.5k, vaccinia promoter, inducible promoters,
etc. Preferred promoters are isolated from poxviruses e.g. 7.5K, H5R, TK, p28, p11
or K1L of vaccinia virus. Alternatively, one may use a synthetic promoter such as
those described in
CHAKRABARTI.. Biotechniques. 1997, no.23, p.1094-97. ,
HAMMOND, et al.. Journal of Virological Methods. 1997, no.66, p.135-38. and
KUMAR.. Virology. 1990, no. 179, p. 151-8. as well as chimeric promoters between early and late poxviral promoters.
[0059] The nucleic acid sequence of interest and the nucleic acid sequence comprising a
gene coding a permease may further include additional functional elements, such as
intron sequences, targeting sequences, transport sequences, secretion signal, nuclear
localization signal, IRES, poly A transcription termination sequences, tripartite
leader sequences, sequences involved in replication or integration. Said sequences
have been reported in the literature and can be readily obtained by those skilled
in the art,
[0060] Also disclosed is a process for preparing a poxvirus according to the invention,
in which process:
- (i) a poxvirus according to the invention is introduced into a cell,
- (ii) said cell is cultured under conditions which are appropriate for enabling said
poxvirus to be produced, and
- (iii) said poxvirus is recovered from the cell culture.
[0061] While the poxvirus can of course be recovered from the culture supernatant, it can
also be recovered from the cells. One of the commonly employed methods consists in
lysing the cells by means of consecutive freezing/thawing cycles in order to collect
the virions in the lysis supernatant. The virions can then be amplified and purified
using the techniques of the art (chromatographic method, method of ultra-centrifugation,
in particular through a cesium chloride gradient, etc.).
[0062] The present invention, also relates to a composition which comprises a poxvirus according
to the invention in combination with a pharmaceutically acceptable excipient for use
in the treatment of a proliferative disease, rheumatoid arthritis or osteoporosis.
[0063] A composition according to the invention is more specifically intended for the preventive
or curative treatment of diseases by means of gene therapy and is more specifically
aimed at proliferative diseases (cancers, tumors, restenosis, etc.) or aimed at diseases
associated to an increased osteoclast activity (e.g. rheumatoid arthritis, osteoporosis).
[0064] A composition according to the invention can be made conventionally with a view to
administering it locally, parenterally or by the digestive route. In particular, a
therapeutically effective quantity of the recombinant vector or poxvirus of the invention
is combined with a pharmaceutically acceptable excipient. It is possible to envisage
a large number of routes of administration. Examples which may be mentioned are the
intragastric, subcutaneous, intracardiac, intramuscular, intravenous, intraperitoneal,
intratumor, intranasal, intrapulmonary and intratracheal routes. In the case of these
three latter embodiments, it is advantageous for administration to take place by means
of an aerosol or by means of instillation. The administration can take place as a
single dose or as a dose which is repeated on one or more occasions after a particular
time interval. The appropriate route of administration and dosage vary depending on
a variety of parameters, for example the individual, the disease to be treated or
the gene(s) of interest to be transferred. The preparations based on viral particles
according to the invention can be formulated in the form of doses of between 10
4 and 10
14 pfu (plaque-forming units), advantageously 10
5 and 10
13 pfu, preferably 10
6 and 10
12 pfu, more preferably 10
6 and 10
7.
[0065] The composition can also include a diluent, an adjuvant or an excipient which is
acceptable from the pharmaceutical point of view, as well as solubilizing, stabilizing
and preserving agents. In the case of an injectable administration, preference is
given to a formulation in an aqueous, nonaqueous or isotonic solution. It can be presented
as a single dose or as a multidose, in liquid or dry (powder, lyophilizate, etc.)
form which can be reconstituted at the time of use using an appropriate diluent.
[0066] Also disclosed is the use of a poxvirus or a composition according to the invention
for preparing a medicament which is intended for treating the human or animal body
by gene therapy. The medicament can be administered directly
in vivo (for example by intravenous injection, into an accessible tumor, into the lungs by
means of an aerosol, into the vascular system using an appropriate catheter, etc.).
A preferred use consists in treating or preventing cancers, tumors and diseases which
result from unwanted cell proliferation. Conceivable applications which may be mentioned
are cancers of the breast, of the uterus (in particular those induced by papilloma
viruses), of the prostate, of the lung, of the bladder, of the liver, of the colon,
of the pancreas, of the stomach, of the oesophagus, of the larynx, of the central
nervous system (e.g. glioblastoma) and of the blood (lymphomas, leukemia, etc.). An
other preferred use consists in treating or preventing rheumatoid arthritis, osteoporosis
and other diseases associated to an increased osteoclast activity. It can also be
used in the context of cardiovascular diseases, for example in order to inhibit or
retard the proliferation of the smooth muscle cells of the blood vessel wall (restenosis).
Finally, in the case of infectious diseases, it is possible to conceive of the medicament
being applied to AIDS.
[0067] When the poxvirus, composition or method of the invention is used for the treatment
of cancer, the preferred route of administration is the systemic route since the poxvirus
according to the invention is able to specifically target the tumoral cells.
[0068] The invention also extends to a method for treating diseases characterized in that
a poxvirus, a composition according to the invention is administered to an host organism
or cell which is in need of such treatment.
[0069] According to an advantageous embodiment, the therapeutic use or the treatment method
also comprises an additional step in which pharmaceutically acceptable quantities
of a prodrug, advantageously an analog of cvtosine, in particular 5-FC, are administered
to the host organism or cell. By way of illustration, it is possible to use a dose
of from 50 to 500 mg/kg/day, with a dose of 200 mg/kg/day or of 100 mg/kg/day being
preferred. Within the context of the present invention, the prodrug is administered
in accordance with standard practice (e.g. per os, systematically).
[0070] Preferably, the administration taking place subsequent to the administration of the
therapeutic agent according to the invention, preferably at least 3 days, more preferably
at least 4 days and even more preferably at least 5 days after the administration
of the therapeutic agent. According to an even more preferred embodiment of the invention,
the administration of the prodrug takes place 7 days after the administration of the
therapeutic agent. The oral route is preferred. It is possible to administer a single
dose of prodrug or doses which are repeated for a time which is sufficiently long
to enable the toxic metabolite to be produced within the host organism or cell.
[0071] Furthermore, the composition or method according to the invention can be combined
with one or more substances which potentiate the cytotoxic effect of the 5-FU. Mention
may in particular be made of drugs which inhibit the enzymes of the pathway for the
de novo biosynthesis of the pyrimidines (for example those mentioned below), drugs such as
Leucovorin (
Waxman et al., 1982, Eur. J. Cancer Clin. Oncol. 18, 685-692), which, in the presence of the product of the metabolism of 5-FU (5-FdUMP), increases
the inhibition of thymidylate synthase, resulting in a decrease in the pool of dTMP,
which is required for replication, and finally drugs such as methotrexate (
Cadman et al., 1979, Science 250, 1135-1137) which, by inhibiting dihydrofolate reductase and increasing the pool of PRPP (phosphoribosylpyrophosphate),
brings about an increase in the incorporation of 5-FU into the cellular RNA.
[0072] According to the present invention, the drugs which inhibit the enzymes of the pathway
for the
de novo biosynthesis of the pyrimidines are preferably selected from the group consisting
of PALA (N-(phosphonoacetyl)-L-aspartate;
Moore et al., 1982, Biochem. Pharmacol. 31, 3317-3321), Leflunomide, A771726 (active metabolite of Leflunomide;
Davis et al., 1996, Biochem. 35, 1270-1273) and Brequinar (
Chen et al., 1992, Cancer Res. 52, 3251-3257).
[0073] The composition or method according to the invention can be combined with one or
more substances effective in anticancer therapy. Among pharmaceutical substances effective
in anticancer therapy which may be used in association or in combination with the
compositions according to the invention, there may be mentioned alkylating agents
such as, e.g., mitomycin C, cyclophosphamide, busulfan, ifosfamide, isosfamide, melphalan,
hexamethylmelamine, thiotepa, chlorambucil, or dacarbazine; antimetabolites such as,
e.g., gemcitabine, capecitabine, 5-fluorouracil, cytarabine, 2-fluorodeoxy cytidine,
methotrexate, idatrexate, tomudex or trimetrexate; topoisomerase II inhibitors such
as, e.g., doxorubicin, epirubicin, etoposide, teniposide or mitoxantrone; topoisomerase
I inhibitors such as, e.g., irinotecan (CPT-11), 7-ethyl-10-hydroxy-camptothecin (SN-38)
or topotecan; antimitotic drugs such as, e.g., paclitaxel, docetaxel, vinblastine,
vincristine or vinorelbine; and platinum derivatives such as, e.g., cisplatin, oxaliplatin,
spiroplatinum or carboplatinum.
[0074] The compositions or methods according to the invention can also be use in combination
with radiotherapy.
[0075] The compositions or methods according to the invention may also be use in combination
with one or more other agents including but not limited to immunomodulatory agents
such as, e.g. alpha, beta or gamma interferon, interleukin (in particular IL-2, IL-6,
IL-10 or IL-12) or tumor necrosis factor; agents that affect the regulation of cell
surface receptors such as, e.g. inhibitors of Epidermal Growth Factor Receptor (in
particular cetuximab, panitumumab, zalutumumab, nimotuzumab, matuzumab, gefitinib,
erlotinib or lapatinib) or inhibitors of Human Epidermal Growth Factor Receptor-2
(in particular trastuzumab); and agents that affect angiogenesis such as, e.g. inhibitor
of Vascular Endothelial Growth Factor (in particular bevacizumab or ranibizumab).
Brief Description of Figures in the Drawings
[0076]
Figure 1. In vitro Sensitivities to 5-FC of vaccinia viruses infected human colorectal tumor
cells (LoVo). LoVo cells, infected at a MOI of 0.0001 with the indicated viruses (mock
(●) VVTK-/FCU1 (■) or VVTK-I4L-/FCU1 (△)) were exposed to various concentration of
5-FC. Cell survival was measured at 5 days post-infection. Results were expressed
in percentage of cellular viability in the presence or not of drugs. Values are represented
in mean ± SD of three individual determinations without the cell mortality due to
the replication of the viruses.
Figure 2. In vitro Sensitivities to 5-FC of vaccinia viruses infected human colorectal tumor
cells (LoVo). LoVo cells, infected at a MOI of 0.0001 with the indicated viruses (mock
(●) VVTK-/FCU1 (■) or VVTK-F4L-/FCU1 (◇) were exposed to various concentration of
5-FC. Cell survival was measured at 5 days post-infection. Results were expressed
in percentage of cellular viability in the presence or not of drugs. Values are represented
in mean ± SD of three individual determinations without the cell mortality due to
the replication of the viruses.
Figure 3. In vitro replication efficacy of WTK-/FCU1 and WTK-14L-/FCU1 in LoVo infected at
a MOI of 0.0001 with the indicated viruses at day 5 post infection. Values are represented
in mean ± SD of three individual determinations.
Figure 4. In vitro replication efficacy of WTK-/FCU1 and WTK-F4L-/FCU1 in LoVo infected at
a MOI of 0.0001 with the indicated viruses at day 5 post infection. Values are represented
in mean ± SD of three individual determinations.
Figure 5. Mean tumor volume ± SEM of s.c LoVo in Swiss nude mice after i.v injection of virus.
7 days after inoculation with tumor (palpable tumor), mice were treated by 107 pfu of buffer + saline (◇), buffer + 5-FC (◆), WTK-14L-/FCU1 + saline (△) or WTK-14L-/FCU1
+ 5-FC (▲). The animals were treated by saline or 5-FC at 100 mg/kg/j twice a day
by oral gavage, 7 days after virus injection during 3 weeks. Tumor volume was measured
twice a week.
Figure 6. Mean tumor volume ± SEM of s.c LoVo in Swiss nude mice after i.v injection of virus.
7 days after inoculation with tumor (palpable tumor), mice were treated by 107 pfu of buffer + saline (◇), buffer + 5-FC (◆), WTK-F4L-/FCU1 + saline (□) or WTK-F4L-/FCU1
+ 5-FC (■). The animals were treated by saline or 5-FC at 100 mg/kg/j twice a day
by oral gavage, 7 days after virus injection during 3 weeks. Tumor volume was measured
twice a week.
Figure 7. Mean tumor volume ± SEM of s.c LoVo in Swiss nude mice after i.v injection of virus.
11 days after inoculation with tumor (palpable tumor), mice were treated by buffer
+ H2O (◇), or buffer + 5-FC (◆), or one injection of 107 pfu of VVTK-I4L-/FCU1 + H2O (○), or one injection of 107 pfu of VVTK-14L-/FCU1 + 5-FC (5-FC administrated 7 days after virus injection and
during 3 weeks) (●), or two injections (day 11 and day 33) of 107 pfu of VVTK-14L-/FCU1 + H2O (□), or two injections (day 11 and day 33) of 107 pfu of VVTK-14L-/FCU1 + 5-FC (5-FC administrated from day 18 to day 32 and from day
40 to day 54) (■). The animals were treated by 5-FC at 100 mg/kg twice a day by oral
gavage. Tumor volume was measured twice a week.
Figure 8. Mean tumor volume ± SEM of s.c U87-MG (glioblastoma tumor cells) in Swiss nude mice
after i.v injection of virus. 11 days after inoculation with tumor (palpable tumor),
mice were treated by buffer + H2O (◇), or buffer+ 5-FC (◆), or 107 pfu of VVTK-14L-/FCU1 + H2O (○), or 107 pfu of VVTK-14L-/FCU1 + 5-FC (●). The animals were treated by 5-FC at 100 mg/kg twice
a day by oral gavage, 7 days after virus injection and during 3 weeks. Tumor volume
was measured twice a week.
Figure 9. Ratio of virus yield in dividing cells versus in confluent cells. PANC1 (pancreatic
human tumor), H1299 (Lungs human tumor) or U118MG (glioma human tumor) cells are infected
with 100 pfu of (■) VVTK-/FCU1 or (□) VVTK-I4L-/FCU1. 48h post-infection, viral titers
were determined. Values are the ratio between yields of virus in dividing cells versus
in confluent cells.
Figure 10. Ratio of virus yield in dividing cells versus in confluent cells. PANC1 (pancreatic
human tumor), H1299 (Lungs human tumor) or U118MG (glioma human tumor) cells are infected
with 100 pfu of (■) VVTK-/FCU1 or (□) VVTK-F4L-/FCU1. 48h post-infection, viral titers
were determined. Values are the ratio between yields of virus in dividing cells versus
in confluent cells.
Figure 11. Viral titers (pfu/mg of tissue) in organs or tumors at day 6 and day 21 after i.v.
infection into Swiss nude mice bearing subcutaneous human tumors with 1x106 PFU of VVTK-/FCU1 (■) or VVTK-14L-/FCU1 (□).
Figure 12. Viral titers (pfu/mg of tissue) in organs or tumors at day 6 and day 21 after i.v.
infection into Swiss nude mice bearing subcutaneous human tumors with 1x106 PFU of VVTK-/FCU1 (■) or WTK-F4L-/FCU1 (□).
Figure 13. Survival of Swiss nude mice after treatment with 1x108 pfu of VVTK-/FCU1 (■) or VVTK-14L-/FCU1 (○) by i.v injection.
Figure 14. Survival of immunocompetent B6D2 mice after treatment with 1x107 pfu (A) or 1x108 pfu (B) of WTK-/FCU1 (■) or VVTK-14L-/FCU1 (◇) by i.v injection.
Figure 15. Average quantity of pocks on tails after i.v injection of 1x106 pfu VVTK-/FCU1 or WTK-14L-/FCU1 in Swiss nude mice at day 13 post-infection and at
day 34 post-infection.
Figure 16. Average quantity of pocks on tails after i.v injection of 1x106 pfu WTK-/FCU1 or WTK-F4L-/FCU1 in Swiss nude mice at day 13 post-infection and at
day 34 post-infection.
Figure 17. Average quantity of pocks on tails after i.v injection of 1x107 pfu WTK-/FCU1 or VVTK-I4L-/FCU1 in Swiss nude mice at day 15 post-infection and at
day 31 post-infection.
Figure 18. Average quantity of pocks on tails after i.v injection of 1x107 pfu WTK-/FCU1 or WTK-F4L-/FCU1 in Swiss nude mice at day 15 post-infection and at
day 31 post-infection.
Mode(s) for Carrying Out the Invention
Examples
Construction of vector plasmids
[0077] A shuttle plasmid for deleting I4L was constructed using the DNA of vaccinia virus
strain Copenhagen (accession number M35027) deleted on Thymidine Kinase gene and expressing
FCU1 gene under the control of vaccinia synthetic promoter p11 K7.5. The DNA flanking
regions of I4L were amplified by PCR. Primers of the downstream flanking region of
I4L were 5'- TCC
CCC GGG TTA ACC ACT GCA TGA TGT ACA -3' (SEQ ID N°:7;
SmaI site underlined) and 5'- GCC
GAG CTC GAG GTA GCC GTT TGT AAT TCT -3' (SEQ ID N°:8;
SacI site underlined). Primers for the upstream region were 5'- GCC
TGG CCA TAA CTC CAG GCC GTT - 3' (SEQ ID N°:9;
MscI site underlined) and 5' - GCC
CAG CTG ATC GAG CCG TAA CGA TTT TCA - 3' (SEQ ID N°:10;
PvuII site underlined). The amplified DNA fragment were digested with restriction enzyme
SmaI/
SacI or
MscI/
PvuII and ligated into the corresponding sites in
PpolyIII plasmid. A repeat region of the downstream flanking region of I4L was amplified by
PCR using the primers 5'- GCC
GCA TGC ATC CTT GAA CAC CAA TAC CGA - 3' (SEQ ID N°:11;
SphI site underlined) and 5'- GC
T CTA GAG AGG TAG CCG TTT GTA ATC TG - 3' (SEQ ID N°:12;
XbaI site underlined) and inserted in
PpolyIII plasmid. The repeat region is used to eliminate the selection cassette during the
production of deleted viruses. The selection cassette, corresponding to the GFP/GPT
fusion gene under the control of pH5R vaccinia promoter, was inserted into the
SacI/
SphI site in
PpolyIII plasmid. The obtained plasmid is the recombinant shuttle plasmid named pΔI4L for
deletion of I4L gene.
[0078] A shuttle plasmid for deleting F4L was constructed using the DNA of vaccinia virus
strain Copenhagen (accession number M35027). The DNA flanking regions of F4L were
amplified by PCR. Primers of the downstream flanking region of F4L were 5'- CGC
GGA TCC TTT GGT ACA GTC TAG TAT CCA - 3' (SEQ ID N°:13;
BamHI site underlined) and 5' - TCC
CCC GGG TTA TAA CAG ATG CAG TAT CCA - 3' (SEQ ID N°:14;
SmaI site underlined). Primers for the upstream region were 5'- GCC
CAG CTG TTC AAT GGC CAT CTG AAA TCC - 3' (SEQ ID N°:15;
PvuII site underlined) and 5'- GA
A GAT CTA GTA TCG CAT CTA AAA GAT GG - 3' (SEQ ID N°:16;
BgIII site underlined). The amplified DNA fragment were digested with restriction enzyme
BamHI/
SmaI or
BgIII/
PvuII and ligated into the corresponding sites in
PpolyIII plasmid. A repeat region of the downstream flanking region of I4L was amplified by
PCR using the primers 5'- GCC
GAG CTC ACC CAC ACG TTT TTC GAA AAA - 3' (SEQ ID N°:17;
SacI site underlined) and 5'- GCC
GCA TGC TTA TAA CAG ATG CAG TAT CAA-3' (SEQ ID N°:18;
SphI site underlined) and inserted in
PpolyIII plasmid. The repeat region is used to eliminate the selection cassette during the
production of deleted viruses. The selection cassette, corresponding to the GFP/GPT
fusion gene under the control of pH5R vaccinia promoter, was inserted into the
SacI/
SmaI site in
PpolyIII plasmid. The obtained plasmid is the recombinant shuttle plasmid named pΔF4L for
deletion of F4L gene.
The generation of recombinant vaccinia viruses.
[0079] CEF cells were infected with VVTK-FCU1 (Vaccinia virus, defective for the J2R
Kinase gene, expressing
FCU1 gene under the control of synthetic promoter p11 k7.5) strain Copenhagen at a MOI
of 0.1 and incubated at 37°C for 2 h, then transfected with a CaCl
2 coprecipitate of the recombinant shuttle plasmid (0.2 µg). The cells were incubated
for 48 h at 37°C. Dilutions of virus emerging were then used to infect the CEF cells
in selection medium containing Hypoxanthine at final concentration of 15 µg/ml, xanthine
at final concentration of 250 µg/ml and mycophenolic acide at final concentration
of 250 µg/ml. Fluorescent (GFP) and positive (GPT selection) plaques were isolated
and selected for a several round of selection in CEF cells in presence of GPT selection
medium. The presence or not of WTK-FCU1 was determined by 40 cycles of PCR with primers
inside the deletion region. After the elimination of parental virus, the double deleted
virus was used to infect CEF without GPT selection medium to eliminate the selection
cassette. Non-fluorescent plaques were isolated and selected for 2 cycles in CEF.
Final recombinant VV viruses were amplified in CEF, purified and virus stocks were
titrated on CEF by plaque assay.
In vitro cell sensitivity to 5-FC.
[0080] Human tumor cells were transduced by the respective recombinant VV at a MOI of 0.0001.
A total of 3 x 10
5 cells/well were plated in 6-well culture dishes in 2 ml of medium containing various
concentrations of 5-FC. Cells were then cultured at 37°C for 5 days, and the viable
cells were counted by trypan blue exclusion. Results depicted in
figure 1, 2, 3 and 4 shows that the FCU1 activity is equivalent in viruses defective for the J2R gene
than in viruses defective for the I4L and J2R gene or than in viruses defective for
the F4L and J2R gene.
In vitro replication in cultured cells.
[0081] Dividing or confluent cells were infected, in 6-wells plaques, at 100 PFU of viruses
(nearly MOI 0.0005). 2 mL of medium supplemented with 10% FCS for dividing cells and
no supplemented for confluent cells were added. The cells were harvested at 48 hours
post-infection. The cells were stored at -20°C and sonicated to release the virus,
virus was also quantified by plaque titration on CEF cells. The ratio between replication
in dividing cells and confluent cells are similar in all cells. Both viruses VVTK-/FCU1,
VVTK-14L-/FCU1 and VVTK-F4L-/FCU1 replicate more in dividing cells than in confluent
cells.
[0082] As an indirect mean to assay for replication virus specificity, the yield of virus
produced in dividing versus confluent tumor cells (pancreatic human tumor PANC1; lung
human tumor H1299; glioma human tumor U118MG) was determined. Confluent cells were
plated at 1x10
6 cells/well and cultured in complete media for 7 days then 1 day before infection
the cells were washed and cultured in media without serum. Dividing cells were plated
at 3x10
5 cells/well one day before infection. To evaluate the level of cell division, the
amount of titrated thymidine incorporated into nucleic acid was measured 5 hours,
24 hours and 48 hours after plating cells. During this period thymidine incorporation
was relatively constant in confluent cells whereas in dividing cells an increase in
incorporation was seen over time. Then the cells were infected with 100 pfu of viruses,
and 48h post infection the ratio between the yield of virus produced in dividing tumor
cells and in confluent tumor cells was determined by plaque titration on CEF. Results
depicted in
figures 9 and 10 show that both viruses VVTK-/FCU1, VVTK-I4L-/FCU1 and WTK-F4L-/FCU1 replicate more
in dividing cells than in confluent cells. Results depicted in
figures 9 and 10 show moreover an increase of ratio in all the different types of cells for both viruses
WTK-I4L-/FCU1 and VVTK-F4L-/FCU1 by comparison with WTK-/FCU1. This increase of ratio
in all the different types of cells is due to a lower replication of both viruses
VVTK-14L-/FCU1 and VVTK-F4L-/FCU1 in confluent cells. These results demonstrate that
both viruses WTK-I4L-/FCU1 and VVTK-F4L-/FCU1 display an increased specificity toward
dividing cells compared to VVTK-/FCU1.
Subcutaneous tumor model.
[0083] Female Swiss nude mice were obtained from Charles River Laboratories. Animals used
in the studies were uniform in age (6 weeks) and body weights ranged from 23-26 g.
Swiss nude mice were injected subcutaneously (s.c.) into the flank with 5x10
6 LoVo cells. When tumors reached a diameter of 50-70 mm
3, the mice were randomized in a blinded manner and treated with the indicated vectors
for the
in vivo experiments.
Biodistribution of the virus.
[0084] The presence of the various viruses was evaluated by virus titration in tumors and
organ samples. 1x10
6 PFU of VV-FCU1 or WTK-I4L-/FCU1 or VVTK-F4L-/FCU1 was injected intravenously (i.v.)
by tail vein injection into nude mice bearing established s.c. LoVo tumors. Mice were
sacrificed at indicated time points, and the tumors and other organs were collected
and weighted. Tumors and organs were homogenized in PBS and titers were determined
on CEF as described previously. Viral titers were standardized to milligram of tissue.
Viral titers were standardized to milligram of tissue. Results depicted in
Table 2, 3, 4 and 5 (the range of virus titers is presented in pfu/mg of tissue) show that after 14 days
the virus according to the invention is mostly found in the tumor. Results depicted
in
figures 11 and 12 show that both viruses WTK-/FCU1, VVTK-I4L-/FCU1 and VVTK-F4L-/FCU1 target the tumor
with about 1 000 to 10 000 fold more virus in the tumor than in the other organs analyzed
except for tails in the case of VVTK-/FCU1. A small amount of VVTK-/FCU1 is detected
in lungs, spleen, kidney and lymph nodes (less than 10 pfu/mg) and more in skin, tail
and bone marrow at day 6, and skin and tail at day 21. In contrast, both WTK-I4L-/FCU1
and VVTK-F4L-/FCU1 have higher tumor specificity with only a small amount in lymph
nodes and tail at day 6, and only in tumor at day 21.
Table 2
| |
Tumor |
Lungs |
Spleen |
Kidney |
L.Nodes |
Heart |
| VVTK-/FCU1 |
(0,2-3.3)x105 |
0.1-2 |
0-2.2 |
0-1.8 |
0-61 |
0-0.3 |
| VVTK-I4L/FCU1 |
25.6-2.2x105 |
0-0.1 |
n.d |
0-1 |
n.d |
n.d |
Table 3
| |
Ovaries |
Skin |
Tail |
Bone Marrow |
Brain |
Muscles |
| VVTK-/FCU1 |
2.2-74 |
0.1-24 |
13.5-7.104 |
0-800 |
0-1.8 |
0-22 |
| WTK-I4L/FCU1 |
0-102 |
n.d |
26,3 |
n.d |
n.d |
n.d |
Table 4
| |
Tumor |
Lungs |
Spleen |
Kidney |
L. Nodes |
Ovaries |
| VVTK-/FCU1 |
(0,2-3,3)×105 |
0.1-2 |
0-2.2 |
0-1.8 |
0-61 |
2.2-74 |
| WTK-F4L/FCU1 |
51.8-3.8×104 |
n.d |
n.d |
n.d |
0-2.1 |
n.d |
Table 5
| |
Tail |
Bone Marrow |
Intestine |
Brain |
Muscles |
Heart |
| VVTK-/FCU1 |
13.5-7.104 |
0-800 |
n.d |
0-1.8 |
0-22 |
0-0.3 |
| VVTK-F4L/FCU1 |
0-7.9 |
n:d |
n.d |
n.d |
n.d |
n.d |
Antitumor activity of of the poxvirus of the invention in s.c. tumor model.
[0085] Nude mice bearing established s.c. LoVo tumors (50-70 mm
3) were treated one time intravenously (by tail vein) with the indicated vectors at
dose of 1.10
7 PFU, respectively. Starting day 7 following viral injection, 5-FC was given by oral
gavage at 100 mg/kg (0.5 ml 5-FC 0.5% in water) twice a day for 3 weeks. Tumor size
was measured twice weekly using calipers. Tumor volume were calculated in mm
3 using the formula (
p/6) (length x width
2). The results depicted in
figure 5 and 6 show that the variouses viruses have a similar efficacy with an oncolytic activity
(p<0.05) able to control the growth of tumor, and a combined activity (oncolytic of
the virus and therapeutic of FCU1 gene) with administration of 5-FC which can further
improve the control of the tumor growth (p<0.01).
[0086] Nude mice bearing established s.c. LoVo tumors (50-70 mm
3) were also treated intravenously (by tail vein) with the indicated vectors at dose
of 1.10
7 PFU according to the followings: 11 days after inoculation with tumor (palpable tumor),
mice were treated by buffer + H
2O, or buffer + 5-FC, or one injection of 10
7 pfu of WTK-I4L-/FCU1 + H
2O, or one injection of 10
7 pfu of WTK-I4L-/FCU1 + 5-FC (5-FC administrated 7 days after virus injection and
during 3 weeks), or two injections (day 11 and day 33) of 10
7 pfu of WTK-I4L-/FCU1 + H
2O, or two injections (day 11 and day 33) of 10
7 pfu of VVTK-I4L-/FCU1 + 5-FC (5-FC administrated from day 18 to day 32 and from day
40 to day 54). The animals were treated by 5-FC at 100 mg/kg twice a day by oral gavage.
Tumor size was measured twice weekly using calipers. Tumor volume were calculated
in mm
3 using the formula (
p/6) (length x width
2). The results depicted in
figure 7 show that no antitumoral activity of virus alone after one or two injections. The
addition of 5-FC treatment shows statistically significant inhibition of tumor growth
(p<0.05) when compared with vehicle groups and virus alone (without 5-FC) until day
50. As with one single injection, two i.v. injections of WTK-I4L-/FCU1 + 5-FC demonstrates
a significant antitumoral activity when compared with vehicle groups and two injections
of virus alone (without 5-FC) (p<0.05). Moreover, a significant difference on tumor
evolution is observed from day 56 between one and two injections of virus in combination
of 5-FC treatment (p<0.05).
[0087] Nude mice bearing established s.c. U87-MG (glioblastoma tumor cells) were treated
intravenously (by tail vein) with the indicated vectors at dose of 1.10
7 PFU according to the followings: 11 days after inoculation with tumor (palpable tumor),
mice were treated by buffer + H
2O, or buffer + 5-FC, or 10
7 pfu of WTK-14L-/FCU1 + H
2O, or 10
7 pfu of VVTK-I4L-/FCU1 + 5-FC. The animals were treated by 5-FC at 100 mg/kg twice
a day by oral gavage, 7 days after virus injection and during 3 weeks. Tumor size
was measured twice weekly using calipers. Tumor volume were calculated in mm
3 using the formula (π/6) (length x width
2). The results depicted in
figure 8 show a high oncolytic activity of the VVTK-I4L-/FCU1 on U87-MG cells which result
in a strong antitumor activity (p<0.0001). The combined activity with addition of
5-FC, by oral gavage, results in similar activity (p<0.0001).
Viral pathogenicity.
[0088] Viral pathogenicity was assessed with survival studies done on both Swiss nude mice
(
figure 13) and immunocompetents B6D2 mice (
figure 14). Mice were injected I.V. with 1.10
7 or 1.10
8 PFU of all VVTK-/FCU1 and VVTK-I4L-/FCU1 in 100 µL of Buffer per mouse. Mice were
observed daily throughout the course of the experiment. In Swiss nude mice
(figure 13), the injection of 1x10
8 PFU of VVTK-/FCU1 results in the death of 40% of the animals 3 days after infection.
The remaining mice died between day 50 and day 80 after infection. The administration
of VVTK-14L-/FCU1 was less pathogenic, the majority of the animals died between day
65 to 140 (p<0.01). No evidence of toxicity has been observed with both viruses at
10
7 pfu
(figure 14 (A)). All mice died after i.v injection of 10
8 pfu of WTK-/FCU1
(figure 14 (B)). The group with treatment of WTK-I4L-/FCU1 had significantly prolonged survival
to 70% compared with the VVTK-/FCU1 infected mice (
figure 14 (B)). Therefore, this result demonstrates the decrease of toxicity with the double-deleted
virus VVTK-I4L-/FCU1. Pocks tail lesion model.
[0089] Swiss nude mice were injected I.V. with 1.10
6 (
figures 15 and 16) or 1.10
7 (
figures 17 and 18) PFU of each virus. Tail lesions were enumerated once a week. Mice injected with
1.10
6 PFU of VVTK-I4L-/FCU1 or VVTK-F4L-/FCU1 have less than 1 pock/mice compared with
mice injected with VVTK-/FCU1 with a average of 8 pocks by mice in day 13 post-infection
(p<0.001) as shown in
figure 15 (A) and
figure 16 (A). The results are similar at day 34 post-injection with an average of 4 pocks with
VVTK-/FCU1 compared to nearly 1 for VVTK-14L-/FCU1 or WTK-F4L-/FCU1 (p<0.0001) as
shown in
figure 15 (B) and
figure 16 (B). Mice injected with 1.10
7 PFU of VVTK-14L-/FCU1 or VVTK-F4L-/FCU1 have respectively an average of 3 pocks/mice
and 2 pocks/mice compared to mice injected with 1.10
7 PFU of VVTK-/FCU1 having an average of 10 pocks/mice at day 15 post-infection (
figure 17 (A) and
figure 18 (A)). At day 31 post-infection mice injected with VVTK-14L-/FCU1 or WTK-F4L-/FCU1 have
respectively an average of 1,5 pock/mice and 2 pocks/mice compared to mice injected
with WTK-/FCU1 having an average of 7 pocks/mice (
figure 17 (B) and
figure 18 (B)). The difference in pock number between WTK-/FCU1 and both VVTK-14L-/FCU1 and WTK-F4L-/FCU1
is statistically significant (p<0.01). The pocks formation is correlated with the
replication of virus in the tail and so with virulence and toxicity. Injection in
i.v of VVTK-I4L-/FCU1 or VVTK-F4L-/FCU1 is less toxic than with the single deleted
TK virus.
Statistical analysis.
[0090] Statistical analyses were performed using the nonparametric Mann-Whitney
U test and STATISTICA 7.1 software (StatSoft, Inc.). A
P< 0.05 was considered to be statistically significant.
References
[0091]
- US 5364773 (VIROGENETICS CORPORATION (TROY, NY)) 15.11.1994
- WO 2004/014314 (KIRN DAVID (US) ) 19.02.2004
- WO 2004/014314 (KIRN DAVID (US) ) 19.02.2004
- US 5364773 (VIROGENETICS CORPORATION (TROY, NY)) 15.11.1994
- WO 93/01281 (US HEALTH)
- WO 2005/007857
- WO 2005/007857
- EP 0998568 A
- EP 0998568 A
- EP 0998568 A
- EP 0998568 A
- WO 96/16183
- EP 0998568 A
- EP 0998568 A
- WO 2006/048768
- HERMISTON. A demand for next-generation oncolytic adenoviruses. Current opinion in
molecular therapeutics. 2006, vol.8, no.4, p.322-30.
- FISHER. Striking out at disseminated metastases: the systemic delivery of oncolytic
viruses. Current opinion in molecular therapeutics 2006, vol.8, no.4, p.301-13.
- CHERNAJOVSKY, et al. Fighting cancer with oncolytic viruses. British medical journal.
2006, vol.332, no.7534, p.170-2.
- JIANG, et al. Oncolytic adenoviruses as antiglioma agents. Expert review of anticancer
therapy. 2006, vol.6, no.5, p.697-708.
- COHEN, et al. ONYX-015. Onyx Pharmaceuticals. Current opinion in investigational drugs.
2001, vol.2, no.12, p.1770-5.
- ROBERTS, et al. Naturally oncolytic viruses. Current opinion in molecular therapeutics.
2006, vol.8, no.4, p.314-21.
- THORNE, et al. Vaccinia virus and oncolytic virotherapy of cancer. Current opinion
in molecular therapeutics. 2005, vol.7, no.4, p.359-65.
- STANFORD, et al. Myxoma virus and oncolytic virotherapy: a new biologic weapon in
the war against cancer. Expert opinion on biological therapy. 2007, vol.7, no.9, p.1415-25.
- CONO, et al. Smallpox vaccination and adverse reactions. Guidance for clinicians.
MMWR. Recommendations and reports : Morbidity and mortality weekly report. Recommendations
and reports / Centers for Disease Control. 2003, vol.52, no.RR-4, p.1-28.
- XIANGZHI, et al. Vaccinia virus K1 L protein supports viral replication in human and
rabbit cells through a cell-type-specific set of its ankyrin repeat residues that
are distinct from its binding site for ACAP2. Journal of virology. 2006, vol.353,
no.1, p.220-233.
- MCCART, et al. Systemic cancer therapy with a tumor selective vaccinia virus mutant
lacking thymidine kinase and vaccinia growth factor genes.. Cancer res.. 2001, no.61,
p.8751-57.
- KIM, et al. Systemic armed oncolytic ans immunologic therapy for cancer with JX-594,
a targeted poxvirus expressing GM-CSF. Molecular Therapeutic. 2006, no.14, p.361-70.
- SLABAUGH, et al. . Journal of virology. 1988, vol.62, p.519-27.
- TENGELSEN, et al.. Virology. 1988, no.164, p.121-31.
- SCHMITT, et al. . Journal of virology. 1988, no.62, p.1889-97.
- SLABAUGH, et al. . Journal of virology. 1984, no.52, p.507-14.
- SLABAUGH, et al. . Journal of virology. 1984, no.52, p.501-6.
- HOWELL, et al. . Journal of Biological Chemistry. 1992, no.267, p.1705-11.
- ANTOINE.. Virology. 1998, no.244, p.365-396.
- EL OMARI, et al. Structure of vaccinia virus thymidine kinase in complex with dTTP:
insights for drug design. BMC structural biology. 2006, no.6, p.22.
- MCCART, et al. Systemic cancer therapy with a tumor-selective vaccinia virus mutant
lacking thymidine kinase and vaccinia growth factor genes. cancer research. 2001,
vol.61, no.24, p.8751-7.
- PUHLMANN, et al. Vaccinia as a vector for tumor-directed gene therapy: biodistribution
of a thymidine kinase-deleted mutant. Cancer gene therapy. 2000, vol.7, no.1, p.66-73.
- GNANT, et al. Systemic administration of a recombinant vaccinia virus expressing the
cytosine deaminase gene and subsequent treatment with 5-fluorocytosine leads to tumor-specific
gene expression and prolongation of survival in mice. Cancer Research. 1999, vol.59,
no.14, p.3396-403.
- MCGEOGH.. Nucleic Acids Research. 1990, no. 18, p.4105-10.
- BROYLES.. Virology. 1993, no.195, p.863-5.
- JUND, et al.. Journal of Bacteriology. 1970, no. 102, p.607-15.
- BECK, et al.. Journal of Bacteriology. 1972, no. 110, p.219-28.
- HOEPRICH, et al.. Journal of Infectious Diseases. 1974, no.130, p.112-18.
- ESDERS, et al. . J. biol. chem.. 1985, no.260, p.3915-22.
- KOECHLIN, et al.. Biochemical pharmacology. 1966, no.15, p.435-46.
- POLAK, et al.. Chemotherapy. 1976, no.22, p. 137-53.
- JUND, et al.. Journal of Bacteriology. 1970, no.102, p.607-15.
- KILLSTRUP, et al.. Journal of Bacteriology. 1989, no.171, p.2124-2127.
- HUBER, et al.. Cancer Research. 1993, no.53, p.4619-4626.
- MULLEN, et al.. Proceedings of the National Academy of Sciences of the United States
of America. 1992, no.89, p.33-37.
- HUBER, et al.. Proceedings of the National Academy of Sciences of the United States
of America. 1994, no.91, p.8302-6.
- MESNIL, et al.. Proceedings of the National Academy of Sciences of the United States
of America. 1996, no.93, p.1831-35.
- ANDERSEN, et al. Characterization of the upp gene encoding uracil phosphoribosyltransferase
of Escherichia coli K12. European Journal of Biochemistry. 1992, no.204, p.51-56.
- MARTINUSSEN, et al. Cloning and characterization of upp, a gene encoding uracil phosphoribosyltransferase
from Lactococcus lactis. Journal of Bacteriology. 1994, vol.176, no.21, p.6457-63.
- KIM, et al. Complete sequence of the UPP gene encoding uracil phosphoribosyltransferase
from Mycobacterium bovis BCG. Biochemistry and molecular biology international. 1997,
vol.41, no.6, p.1117-24.
- MARTINUSSEN, et al. Two genes encoding uracil phosphoribosyltransferase are present
in Bacillus subtilis. Journal of Bacteriology. 1995, vol.177, no.1, p.271-4.
- KERN, et al. The FUR1 gene of Saccharomyces cerevisiae: cloning, structure and expression
of wild-type and mutant alleles. Gene. 1990, vol.88, no.2, p.149-57.
- CHAKRABARTI.. Biotechniques. 1997, no.23, p.1094-97.
- HAMMOND, et al.. Journal of Virological Methods. 1997, no.66, p. 135-38.
- KUMAR.. Virology. 1990, no.179, p.151-8.
SEQUENCE LISTING
[0092]
<110> TRANSGENE SA
<120> Poxviral oncolytic vectors
<130> Oncolytic VV
<160> 18
<170> PatentIn version 3.4
<210> 1
<211> 373
<212> PRT
<213> artificial
<220>
<223> derived from Saccharomyces cerevisiae
<400> 1


<210> 2
<211> 373
<212> PRT
<213> artificial
<220>
<223> derived from Saccharomyces cerevisiae
<400> 2


<210> 3
<211> 644
<212> PRT
<213> artificial
<220>
<223> derived from Escherichia Coli
<400> 3




<210> 4
<211> 158
<212> PRT
<213> Saccharomyces cerevisiae
<400> 4


<210> 5
<211> 150
<212> PRT
<213> Candida albicans
<400> 5

<210> 6
<211> 432
<212> PRT
<213> Escherichia coli
<400> 6



<210> 7
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotide
<400> 7
tcccccgggt taaccactgc atgatgtaca 30
<210> 8
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotides
<400> 8
gccgagctcg aggtagccgt ttgtaattct 30
<210> 9
<211> 24
<212> DNA
<213> artificial
<220>
<223> oligonucleotides
<400> 9
gcctggccat aactccaggc cgtt 24
<210> 10
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotides
<400> 10
gcccagctga tcgagccgta acgattttca 30
<210> 11
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotides
<400> 11
gccgcatgca tccttgaaca ccaataccga 30
<210> 12
<211> 29
<212> DNA
<213> artificial
<220>
<223> oligonucleotide
<400> 12
gctctagaga ggtagccgtt tgtaatctg 29
<210> 13
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotide
<400> 13
cgcggatcct ttggtacagt ctagtatcca 30
<210> 14
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotide
<400> 14
tcccccgggt tataacagat gcagtatcca 30
<210> 15
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotide
<400> 15
gcccagctgt tcaatggcca tctgaaatcc 30
<210> 16
<211> 29
<212> DNA
<213> artificial
<220>
<223> oligonucleotide
<400> 16
gaagatctag tatcgcatct aaaagatgg 29
<210> 17
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotide
<400> 17
gccgagctca cccacacgtt tttcgaaaaa 30
<210> 18
<211> 30
<212> DNA
<213> artificial
<220>
<223> oligonucleotide
<400> 18
gccgcatgct tataacagat gcagtatcaa 30
1. An oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis, comprising a defective I4L and/or F4L gene.
2. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 1, wherein the proliferative disease
is cancer or restenosis.
3. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to any of the preceding claims, wherein said poxvirus
further comprises a defective J2R gene.
4. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to any of the preceding claims, wherein said poxvirus
further comprises a defective F2L gene.
5. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to any of the preceding claims, wherein said poxvirus
belongs to the Chordopoxvirinae subfamily.
6. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 5, wherein said poxvirus belongs to the
Vaccinia virus species.
7. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 6, wherein said poxvirus is a Vaccinia
virus strains Copenhagen.
8. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 6, wherein said poxvirus is a Vaccinia
virus strain WR.
9. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to any of the preceding claims, wherein said poxvirus
further comprises a suicide gene.
10. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 9,
wherein said suicide gene encodes a protein having at least a cytosine deaminase activity.
11. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 9, wherein said suicide gene encodes
a protein having at least a uracil phosphoribosyl transferase activity.
12. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 10, wherein said suicide gene is FCY1,
FCA1 or CodA or an analogue thereof.
13. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 12, wherein said protein having at least
a cytosine deaminase activity is the FCU1-8 polypeptide represented in the sequence
identifier SEQ ID N°:2 and analogues thereof.
14. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 10 or 11, wherein said suicide gene codes
a protein having at least one cytosine deaminase and one uracil phosphoribosyl transferase
activity.
15. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 14, wherein said suicide gene codes a
polypeptide comprising an amino acid sequence substantially as represented in the
sequence identifier SEQ ID N°:3 (coda::upp), SEQ ID N°:1 (FCU1) or the amino acid
sequence of FCY1::FUR1.
16. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to any of the preceding claims, wherein said poxvirus
further comprises a nucleic acid sequence comprising a gene coding a permease.
17. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 16, wherein said permease is a purine
or a cytosine permease of S. cerevisiae.
18. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claim 17, wherein said permease is chosen from
the group comprising FCY2 and Fur4 and analogues thereof.
19. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claims 9 to 15, wherein said poxvirus further
comprises the elements necessary for the expression of the suicide gene.
20. The oncolytic poxvirus for use in the treatment of a proliferative disease, rheumatoid
arthritis or osteoporosis according to claims 16 to 18, wherein said poxvirus further
comprises the elements necessary for the expression of the permease.
21. A composition comprising the oncolytic poxvirus according to any one of claims 1 to
20 and a pharmaceutically acceptable excipient for use in the treatment of a proliferative
disease, rheumatoid arthritis or osteoporosis.
22. The composition for use in the treatment of a proliferative disease, rheumatoid arthritis
or osteoporosis according to claim 21, wherein said composition is administered via
the systemic route.
23. The composition for use in the treatment of a proliferative disease, rheumatoid arthritis
or osteoporosis according to according to claim 21 or 22, wherein additionally a pharmaceutically
acceptable amount of a prodrug is administered.
24. The composition for use in the treatment of a proliferative disease, rheumatoid arthritis
or osteoporosis according to claim 23, wherein the prodrug is administered at least
3 days after administration of the poxvirus.
25. The composition for use in the treatment of a proliferative disease, rheumatoid arthritis
or osteoporosis according to claim 23, wherein the prodrug is administered 7 days
after administration of the poxvirus.
1. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose, umfassend ein defektes I4L- und/oder F4L-Gen.
2. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 1, wobei die proliferative Erkrankung
Krebs oder Restenose ist.
3. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach einem der vorstehenden Ansprüche, wobei
das Poxvirus des Weiteren ein defektes J2R-Gen umfasst.
4. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach einem der vorstehenden Ansprüche, wobei
das Poxvirus des Weiteren ein defektes F2L-Gen umfasst.
5. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach einem der vorstehenden Ansprüche, wobei
das Poxvirus zur Chordopoxvirinae-Unterfamilie gehört.
6. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 5, wobei das Poxvirus zur Vaccinia-Virusspezies
gehört.
7. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 6, wobei das Poxvirus ein Vaccinia-Virus,
Copenhagen-Stamm ist.
8. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 6, wobei das Poxvirus ein Vaccinia-Virus,
WR-Stamm ist.
9. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach einem der vorstehenden Ansprüche, wobei
das Poxvirus des Weiteren ein Suizid-Gen umfasst.
10. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 9, wobei das Suizid-Gen ein
Protein codiert, das mindestens eine Cytosin-Deaminase-Aktivität hat.
11. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 9, wobei das Suizid-Gen ein
Protein codiert, das mindestens eine Uracil-Phosphoribosyl-Transferase-Aktivität hat.
12. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 10, wobei das Suizid-Gen FCY1,
FCA1 oder CodA oder ein Analogon davon ist.
13. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 12, wobei das Protein, das mindestens
eine Cytosin-Deaminase-Aktivität hat, das FCU1-8-Polypeptid ist, das in der Sequenzkennzahl
SEQ ID NO:2 dargestellt ist, und Analoga davon.
14. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 10 oder 11, wobei das Suizid-Gen
ein Protein codiert, das mindestens eine Cytosin-Deaminase- und eine Uracil-Phosphoribosyl-Transferase-Aktivität
hat.
15. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 14, wobei das Suizid-Gen ein
Polypeptid codiert, das eine Aminosäuresequenz umfasst, die im Wesentlichen wie in
der Sequenzkennzahl SEQ ID NO:3 (coda::upp), SEQ ID NO:1 (FCU1) oder der Aminosäuresequenz
von FCY1::FUR1 dargestellt ist.
16. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach einem der vorstehenden Ansprüche, wobei
das Poxvirus des Weiteren eine Nucleinsäuresequenz umfasst, die ein Gen umfasst, das
eine Permease codiert.
17. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 16, wobei die Permease ein Purin
oder eine Cytosin-Permease von S. cerevisiae ist.
18. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 17, wobei die Permease ausgewählt
ist aus der Gruppe umfassend FCY2 und Fur4 und Analoga davon.
19. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach den Ansprüchen 9 bis 15, wobei das Poxvirus
des Weiteren die Elemente umfasst, die für die Expression des Suizid-Gens notwendig
sind.
20. Onkolytisches Poxvirus zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach den Ansprüchen 16 bis 18, wobei das Poxvirus
des Weiteren die Elemente umfasst, die für die Expression der Permease notwendig sind.
21. Zusammensetzung, die das onkolytische Poxvirus nach einem der Ansprüche 1 bis 20 und
einen pharmazeutisch verträglichen Exzipienten umfasst, zur Verwendung bei der Behandlung
einer proliferativen Erkrankung, rheumatoider Arthritis oder Osteoporose.
22. Zusammensetzung zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 21, wobei die Zusammensetzung
über den systemischen Weg verabreicht wird.
23. Zusammensetzung zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 21 oder 22, wobei zusätzlich
eine pharmazeutisch verträgliche Menge eines Promedikaments (Prodrug) verabreicht
wird.
24. Zusammensetzung zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 23, wobei das Promedikament
(Prodrug) mindestens 3 Tage nach Verabreichung des Poxvirus verabreicht wird.
25. Zusammensetzung zur Verwendung bei der Behandlung einer proliferativen Erkrankung,
rheumatoider Arthritis oder Osteoporose nach Anspruch 23, wobei das Promedikament
(Prodrug) 7 Tage nach Verabreichung des Poxvirus verabreicht wird.
1. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose, comprenant un gène I4L et/ou F4L
défectueux.
2. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 1, où la
maladie proliférative est un cancer ou une resténose.
3. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon l'une quelconque des revendications
précédentes, où ledit poxvirus comprend en outre un gène J2R défectueux.
4. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon l'une quelconque des revendications
précédentes, où ledit poxvirus comprend en outre un gène F2L défectueux.
5. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon l'une quelconque des revendications
précédentes, où ledit poxvirus appartient à la sous-famille des Chordopoxvirinae.
6. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 5, où ledit
poxvirus appartient à l'espèce des virus de la vaccine.
7. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 6, où ledit
poxvirus est une souche Copenhague du virus de la vaccine.
8. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 6, où ledit
poxvirus est une souche WR du virus de la vaccine.
9. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon l'une quelconque des revendications
précédentes, où ledit poxvirus comprend en outre un gène suicide.
10. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 9, où ledit
gène suicide code pour une protéine possédant au moins une activité cytosine désaminase.
11. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 9, où ledit
gène suicide code pour une protéine possédant au moins une activité uracile phosphoribosyltransférase.
12. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 10, où ledit
gène suicide est FCY1, FCA1 ou CodA ou l'un de leurs analogues.
13. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 12, où ladite
protéine possédant au moins une activité cytosine désaminase est le polypeptide FCU1-8
représenté par l'identifiant de séquence SEQ ID NO : 2 et ses analogues.
14. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon les revendications 10 ou 11,
où ledit gène suicide code pour une protéine possédant au moins une activité cytosine
désaminase et une activité uracile phosphoribosyltransférase.
15. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 14, où ledit
gène suicide code pour un polypeptide comprenant une séquence d'acides aminés substantiellement
telle que représentée par l'identifiant de séquence SEQ ID NO : 3 (coda::upp), SEQ
ID NO : 1 (FCU1) ou la séquence d'acides aminés de FCY1::FUR1.
16. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon l'une quelconque des revendications
précédentes, où ledit poxvirus comprend en outre une séquence d'acide nucléique comprenant
un gène codant pour une perméase.
17. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 16, où ladite
perméase est une purine ou une cytosine perméase de S. cerevisiae.
18. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 17, où ladite
perméase est choisie dans le groupe comprenant FCY2 et Fur4 et leurs analogues.
19. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon les revendications 9 à 15,
où ledit poxvirus comprend en outre les éléments nécessaires à l'expression du gène
suicide.
20. Poxvirus oncolytique pour une utilisation dans le traitement d'une maladie proliférative,
de la polyarthrite rhumatoïde ou de l'ostéoporose selon les revendications 16 à 18,
où ledit poxvirus comprend en outre les éléments nécessaires à l'expression de la
perméase.
21. Composition comprenant le poxvirus oncolytique selon l'une quelconque des revendications
1 à 20 et un excipient pharmaceutiquement acceptable pour une utilisation dans le
traitement d'une maladie proliférative, de la polyarthrite rhumatoïde ou de l'ostéoporose.
22. Composition pour une utilisation dans le traitement d'une maladie proliférative, de
la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 21, où ladite
composition est administrée par la voie systémique.
23. Composition pour une utilisation dans le traitement d'une maladie proliférative, de
la polyarthrite rhumatoïde ou de l'ostéoporose selon les revendications 21 ou 22,
où en outre une quantité pharmaceutiquement acceptable d'un promédicament est administrée.
24. Composition pour une utilisation dans le traitement d'une maladie proliférative, de
la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 23, où le promédicament
est administré au moins 3 jours après l'administration du poxvirus.
25. Composition pour une utilisation dans le traitement d'une maladie proliférative, de
la polyarthrite rhumatoïde ou de l'ostéoporose selon la revendication 23, où le promédicament
est administré 7 jours après l'administration du poxvirus.