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<ep-patent-document id="EP10167455B1" file="EP10167455NWB1.xml" lang="en" country="EP" doc-number="2336320" kind="B1" date-publ="20120321" status="n" dtd-version="ep-patent-document-v1-4">
<SDOBI lang="en"><B000><eptags><B001EP>ATBECHDEDKESFRGBGRITLILUNLSEMCPTIESILTLVFIRO..CY..TRBGCZEEHUPLSK....IS..MT..........................</B001EP><B005EP>J</B005EP><B007EP>DIM360 Ver 2.15 (14 Jul 2008) -  2100000/0</B007EP></eptags></B000><B100><B110>2336320</B110><B120><B121>EUROPEAN PATENT SPECIFICATION</B121></B120><B130>B1</B130><B140><date>20120321</date></B140><B190>EP</B190></B100><B200><B210>10167455.4</B210><B220><date>20070723</date></B220><B240><B241><date>20100701</date></B241></B240><B250>en</B250><B251EP>en</B251EP><B260>en</B260></B200><B300><B310>06291241</B310><B320><date>20060731</date></B320><B330><ctry>EP</ctry></B330></B300><B400><B405><date>20120321</date><bnum>201212</bnum></B405><B430><date>20110622</date><bnum>201125</bnum></B430><B450><date>20120321</date><bnum>201212</bnum></B450><B452EP><date>20111104</date></B452EP></B400><B500><B510EP><classification-ipcr sequence="1"><text>C12P  19/34        20060101AFI20110930BHEP        </text></classification-ipcr><classification-ipcr sequence="2"><text>C07H  21/02        20060101ALI20110930BHEP        </text></classification-ipcr><classification-ipcr sequence="3"><text>C07H  21/04        20060101ALI20110930BHEP        </text></classification-ipcr><classification-ipcr sequence="4"><text>A61K  31/713       20060101ALI20110930BHEP        </text></classification-ipcr><classification-ipcr sequence="5"><text>C12N  15/113       20100101ALI20110930BHEP        </text></classification-ipcr></B510EP><B540><B541>de</B541><B542>Sensibilisierung von Krebszellen für eine Therapie unter Verwendung von siNA-Zielgenen aus den Chromosomenregionen 1p und 19q</B542><B541>en</B541><B542>Sensizitation of cancer cells to therapy using sina targeting genes from the 1p and 19q chromosomal regions</B542><B541>fr</B541><B542>Sensibilisation de cellules cancéreuses à une thérapie à l'aide de gènes ciblant siNA depuis les régions chromosomiques 1p et 19q</B542></B540><B560><B561><text>WO-A2-03/070918</text></B561><B561><text>WO-A2-2004/045497</text></B561><B562><text>RAMAKANTH S ET AL: "Correlation between pulmonary cytochrome P450 transcripts and the organ-selective pneumotoxicity of 3-methylindole", 1 March 1994 (1994-03-01), TOXICOLOGY LETTERS, ELSEVIER BIOMEDICAL PRESS, AMSTERDAM, NL, PAGE(S) 77 - 85, XP023801704, ISSN: 0378-4274 [retrieved on 1994-03-01] * page 83, paragraph 2 *</text></B562></B560></B500><B600><B620><parent><pdoc><dnum><anum>07825533.8</anum><pnum>2064328</pnum></dnum><date>20070723</date></pdoc></parent></B620></B600><B700><B720><B721><snm>Berger François</snm><adr><str>41 Chemin de la Coronnerie</str><city>38240 Meylan</city><ctry>FR</ctry></adr></B721><B721><snm>Pelletier, Laurent</snm><adr><str>74 Lotissement le Champ de Bourg</str><city>F-38570 Goncelin</city><ctry>FR</ctry></adr></B721><B721><snm>Issartel, Jean-Paul</snm><adr><str>9, rue du Fournet</str><city>38120 St Egreve</city><ctry>FR</ctry></adr></B721><B721><snm>Boccard, Sandra</snm><adr><str>45 Grande Rue</str><city>F-38700 La Tronche</city><ctry>FR</ctry></adr></B721></B720><B730><B731><snm>UNIVERSITE JOSEPH FOURIER (GRENOBLE 1)</snm><iid>100245453</iid><irf>EPD09UJFERC2</irf><adr><str>Domaine Universitaire de St.Martin d'Hères, 
B.P. 53</str><city>F-38041 Grenoble Cédex 09</city><ctry>FR</ctry></adr></B731></B730><B740><B741><snm>Grosset-Fournier, Chantal Catherine</snm><sfx>et al</sfx><iid>100026601</iid><adr><str>Grosset-Fournier &amp; Demachy 
54, rue Saint-Lazare</str><city>75009 Paris</city><ctry>FR</ctry></adr></B741></B740></B700><B800><B840><ctry>AT</ctry><ctry>BE</ctry><ctry>BG</ctry><ctry>CH</ctry><ctry>CY</ctry><ctry>CZ</ctry><ctry>DE</ctry><ctry>DK</ctry><ctry>EE</ctry><ctry>ES</ctry><ctry>FI</ctry><ctry>FR</ctry><ctry>GB</ctry><ctry>GR</ctry><ctry>HU</ctry><ctry>IE</ctry><ctry>IS</ctry><ctry>IT</ctry><ctry>LI</ctry><ctry>LT</ctry><ctry>LU</ctry><ctry>LV</ctry><ctry>MC</ctry><ctry>MT</ctry><ctry>NL</ctry><ctry>PL</ctry><ctry>PT</ctry><ctry>RO</ctry><ctry>SE</ctry><ctry>SI</ctry><ctry>SK</ctry><ctry>TR</ctry></B840><B880><date>20110622</date><bnum>201125</bnum></B880></B800></SDOBI><!-- EPO <DP n="1"> -->
<description id="desc" lang="en">
<p id="p0001" num="0001">The invention relates to the identification of genes involved in resistance of cancer cells to therapy, to short nucleic acid molecules which inhibit the expression of these genes by RNA interference and to their use as adjuvant in cancer therapy, to sensitize cancer cells to conventional anticancer agents.</p>
<p id="p0002" num="0002">Gliomas are the most prevalent primary brain tumours. Among them, astrocytomas are a notable source of preoccupation in oncology because their incidence continually increase in industrialized countries (<nplcit id="ncit0001" npl-type="s"><text>Ohgaki, H. and Kleihues, P., acta Neuropathol., 2005, 109, 93-108</text></nplcit>) and, above all, their prognostic is pessimistic because they are refractory to even the most aggressive therapy. For example, median survival time in a patient with glioblastoma multi-form (GBM), the worst grade of astrocytoma, is between 6 to 15 months after diagnosis (<nplcit id="ncit0002" npl-type="s"><text>Chinot, O. et Martin, P.M., Biologie des tumeurs cérébrales gliales, 1996, Montpellier, France</text></nplcit>). Standard treatment is surgery followed by radiotherapy and chemotherapy. Recently, a large phase III study demonstrated that temozolomide (Temodal®) therapy associated to radiotherapy provided a modest 3 months increase survival in glioblastoma (<nplcit id="ncit0003" npl-type="s"><text>Stupp et al., N. Engl. J. Med., 2005, 352, 987-996</text></nplcit>).</p>
<p id="p0003" num="0003">Numerous works have addressed the chemoresistance as the principal cause of therapeutic fail (<nplcit id="ncit0004" npl-type="s"><text>Harris, A.L., Int. J. Radial. Biol. Relat. Stud. Phys. Chem. Med., 1985, 48, 675-680</text></nplcit>).</p>
<p id="p0004" num="0004">Contrasting with astrocytomas, oligodendrogliomas have a dramatic chemosensitivity (<nplcit id="ncit0005" npl-type="s"><text>Perry et al., Arch. Neural, 1999, 56, 434-436</text></nplcit>) resulting in a median survival of 10 years after medical management. Oligodendroglioma response to chemotherapy has been correlated with the loss of heterozygosity (LOH) on 1p and 19q chromosomal arms (<nplcit id="ncit0006" npl-type="s"><text>Cairncross et al., J. Nail. Carter lnst., 1998, 90, 1473-1479</text></nplcit>) with a common chromosomic area including 1p32-36 and 19q13.2-4 (<nplcit id="ncit0007" npl-type="s"><text>Smith et al., Oneogene, 1999, 18, 4144 -4152</text></nplcit>).</p>
<p id="p0005" num="0005">The major part of studies addressing the chemoresistance of astrocytomas concerned drug efflux mechanism. However, the data are scattered and conflicting (<nplcit id="ncit0008" npl-type="s"><text>Ashmore et al., Anticancer drugs, 1999, 10, 861-872</text></nplcit>). Expression of MDR-1 P-glycoprotein (P-gp), a protein associated with MDR, was not preferentially<!-- EPO <DP n="2"> --> detected in resistant gliomas (<nplcit id="ncit0009" npl-type="s"><text>Demeule et al., Int. J. Cancer, 2001, 93, 62-66</text></nplcit>). Moreover, MDR-type drug resistance in glioma cell lines results of long-tenn culturing, and <i>in vivo</i>, only cerebral endothelium induces this mechanism (<nplcit id="ncit0010" npl-type="s"><text>Bahr et al., Brain Pathol., 2003, 13, 482-494</text></nplcit>). Finally, MDR-related genes were not located in the common 1p/19q deletion.</p>
<p id="p0006" num="0006">The correlation between 1p/19q LOH and oligodendrogliomas chemosensitivity strongly suggests that the reduction of global expression of some genes in the common region of deletion could be responsible for the observed chemosensitivity.</p>
<p id="p0007" num="0007">An adjuvant treatment targeting these genes could increased the chemosensitivity of cancer cells.</p>
<p id="p0008" num="0008">The completion of human genome sequencing provides the opportunity to investigate potential candidates among the 1,700 genes located in the 1p/19q LOH region.</p>
<p id="p0009" num="0009">Some studies have focused the search on genes with potential oncogenic properties, which inactivation would lead to oligodendroglioma oncogenesis but no convincing results were obtained to date.</p>
<p id="p0010" num="0010">Numerous genes located in the 1p/19q chromosomal regions (LOH regions) could have potential impact on drug resistance, including those involved in drug efflux systems, metabolism, apoptosis, cell-cycle regulation and DNA-repair.</p>
<p id="p0011" num="0011">To date, the correlation between gene expression and drug resistance has been demonstrated for two genes of the Nucleotide Excision Repair (NER) system, extensively studies in cancer cells: the <i>ERCC1</i> and <i>ERCC2</i> genes. Furthermore, a functional involvement of these genes in drug resistance has been established for the <i>ERCC1</i> gene only.</p>
<p id="p0012" num="0012">Chemotherapy drugs commonly employed, such as PCV regimen (procarbazine, lomustine or CCNU, and vincristine), cisplatin, fotemustine or temozolamide, are DNA-alkylating molecules. These drugs damage DNA leading cells to apoptosis, Cells can correct chemotherapy-induced alterations thanks to various DNA-repair mechanism (<nplcit id="ncit0011" npl-type="s"><text>Li et al., Anticancer Res., 2000, 20, 645-652</text></nplcit> ; <nplcit id="ncit0012" npl-type="s"><text>Wu et al., Clin. Cancer Res., 2003, 9, 5874-5879</text></nplcit>) and thus overcome treatment. This<!-- EPO <DP n="3"> --> phenomenom is responsible for chemoresistance (<nplcit id="ncit0013" npl-type="s"><text>Bosken et al., J. Natl. Cancer Inst., 2002, 94, 1091-1099</text></nplcit>).</p>
<p id="p0013" num="0013">A major role of ERCC1 in reparation of DNA alterations related to alkylating chemotherapy has been reported (<nplcit id="ncit0014" npl-type="s"><text>Chaney S.G. &amp; Sancar A., J. Natl. Cancer Inst., 1996, 88, 1346-1360</text></nplcit>; <nplcit id="ncit0015" npl-type="s"><text>Li et al., Anticancer Res., 2000, 20, 645-652</text></nplcit>). Suppression of ERCC1 expression <i>in vitro</i> by antisense or siRNA technology, leads to a decrease repair activity and an increased sensitivity of cultured cell lines to platinum-based anticancer agents (<nplcit id="ncit0016" npl-type="s"><text>Selvakumaran et al., Cancer Res., 2003, 63, 1311-1316</text></nplcit>; <nplcit id="ncit0017" npl-type="s"><text>Youn et al., Cancer Res., 2004, 64, 4849-4857</text></nplcit>; <nplcit id="ncit0018" npl-type="s"><text>Chang et al., Biochem. Biophys. Res. Commun., 2005, 327, 225-233</text></nplcit>).</p>
<p id="p0014" num="0014">ERCC2 (XPD) expression has been correlated with resistance to alkylating compounds in numerous cell lines (<nplcit id="ncit0019" npl-type="s"><text>Chen et al., Ai Zheng, 2002, 21, 233-239</text></nplcit>; <nplcit id="ncit0020" npl-type="s"><text>Xu et al., Anticancer drugs, 2002, 13, 511-519</text></nplcit>), comprising glioma cell lines (<nplcit id="ncit0021" npl-type="s"><text>Chen et al., Neurosurgery, 1998, 42, 1112-1119</text></nplcit>) and it has been reported that its overexpression increased DNA repair in glioma cell lines (<nplcit id="ncit0022" npl-type="s"><text>Chen et al., Chin. Med. J., 2003, 116, 1171-1174</text></nplcit>). However, a functional involvement of ERCC2 in drug resistance has not been established.</p>
<p id="p0015" num="0015">RNAi interference is the process where the introduction of double stranded RNA into a cell inhibits gene expression in a sequence dependent fashion (reviewed in <nplcit id="ncit0023" npl-type="s"><text>Shuey et al., Drug Discovery Today, 2002, 7, 1040-1046</text></nplcit>). RNA has been observed in a number of organisms such as mammalian, Drosophila, nematodes, fungi and plants and is believed to be involved in anti-viral defense, modulation of transposon-activity and regulation of gene expression. RNAi is usually described as a post-transcriptional gene-silencing mechanism in which dsRNA triggers degradation of homologous messenger RNA in the cytoplasm. Target recognition is highly sequence specific since one or two base pair mismatches between the siRNA and the target gene will greatly reduce silencing effect. The mediators of RNA interference are 21-and 23-nucleotide small interfering RNAs (siRNA). In a second step, siRNAs bind to a ribonuclease complex called RNA-induccd silencing complex (RISC) that guides the small siRNA to its homologous mRNA target. Consequently, RISC cuts the RNA approximately in the middle of the region paired with the antisens siRNA, after which the mRNA is further degraded. Therefore, the use of exogenous siRNA holds great<!-- EPO <DP n="4"> --> promise as a new tool for mammalian functional genomics and may also have future applications as gene-specific therapeutics.</p>
<p id="p0016" num="0016">Using siRNA technology, the inventors have established that four other genes involved in DNA repair (<i>MUTYH</i>, <i>PNKP</i>, <i>POLD1</i>, and <i>RUVBL2</i>) and two genes encoding P450 cytochrom isoforms <i>(CYP2A6</i> and <i>CYP4BI)</i> are also involved in astrocytomas chemoresistance. In addition, the inventors have established, for the first time that ERCC2 is functionally involved in drug resistance.</p>
<p id="p0017" num="0017">MUTYH which belongs to the Base Excision Repair (BER) system is known to repair 8-oxo-7,8-dihydro2'deoxyguanosine (8-oxodG) caused by oxidation. <i>MUTYH</i> mutations and variants were associated with development of multiple colorectal adenomas and cancers (<nplcit id="ncit0024" npl-type="s"><text>Chow et al., Lancet Oncol., 2004, 5, 600-606</text></nplcit>). PNKP, also belonging to the BER system, was shown to be involved in repairing DNA strand breaks caused by reactive oxygen species, ionizing radiations or alkylating agents (<nplcit id="ncit0025" npl-type="s"><text>Whitehouse et al., Celt, 2001, 104, 107-117</text></nplcit>; <nplcit id="ncit0026" npl-type="s"><text>Chappell et al., EMBO J., 2002, 21, 2827-2832</text></nplcit>). It has been related to susceptibility to genotoxic agents but not to chemoresistance (<nplcit id="ncit0027" npl-type="s"><text>Rasouli-Nia et al., P.N.A.S., 2004, 101, 6905-6910</text></nplcit>). POLD1 is known to be involved in NER and NMR (Nucleotide Mismatch Repair) systems, while RUVBL2 is known to be involved in homologous recombination; these proteins have neither been related to chemosensitivity.</p>
<p id="p0018" num="0018">The cytochrome P450 isoforms CYP2A6 and CYP4B1 are known as activators of carcinogenic aromatic amines, and represent possible risk factors for tobacco-related and bladder cancers in human (<nplcit id="ncit0028" npl-type="s"><text>Kamataki et al., Biochem. Res. Comm., 2005, Sep 19</text></nplcit>; <nplcit id="ncit0029" npl-type="s"><text>Imaoka et al., Biochem. Res. Comm. 2000, 277, 776-780</text></nplcit>): they have neither been related to chemosensitivity.</p>
<p id="p0019" num="0019">The inventors have engineered siRNA which efficently inhibit the targeted genes expression and significantly sensitize astrocytoma cells to chemotherapy.</p>
<p id="p0020" num="0020">These siRNAs are useful as adjuvant in cancer therapy, to sensitize cancer cells to chemotherapy and radiotherapy.</p>
<p id="p0021" num="0021">Therefore, the invention relates to a double-stranded short interfering nucleic acid (siNA) molecule comprising a sense and an antisense region, wherein the sense region comprises a nucleotide sequence that is selected from the group consisting<!-- EPO <DP n="5"> --> of: the sequences SEQ ID NO: 64 and 70 and the sequences having at least 70 % identity, preferably at least 80 % identity, more preferably at least 90 % identity with said sequences, and the antisense region comprises a nucleotide sequence that is complementary to the sense region.</p>
<p id="p0022" num="0022">The siNA molecules according to the invention target two genes <i>CYP2A6</i> and <i>CYP4B1</i>) of the chromosomic regions 1p32-36 and 19q13.2-4 (loss of heterozygosity regions or LOH region) which are all involved in resistance of cancer cells to chemotherapy and/or radiotherapy. The siNA molecules according to the invention are able to down regulate the expression of the <i>CYP2A6</i> or <i>CYP4B1</i> genes (target genes) by RNA interference and thereby increase the sensitivity of cancer cells to conventional anticancer agents. Thus the siNA molecules according to the present invention potentiate the cytotoxic effect of chemotherapy/radiotherapy on cancer cells.</p>
<p id="p0023" num="0023">The resistance of cancer cells to an anticancer agent may be evaluated by a resistance index (RI) corresponding to the proportion of a cell population that survived to treatment with said anticancer agent. It is calculated as follows: cell number with anticancer agent treatment / cell number in control condition.</p>
<p id="p0024" num="0024">The sensibilization effect mediated by the siNA according to the present invention, may be evaluated by the siNA-induced drug sensibilization index (DS) which corresponds to the cell population (%) that survived to a simple treatment with an anticancer agent but died in response to the same treatment with an siNA transfection. It is calculated as follows (RI <sub>control siNA</sub> - RI <sub>target siNA</sub>) / RI <sub>control siNA</sub> x 100; the target siNA is directed to the resistance gene and the control siNA is directed to a geene which is not involved in resistance to anticancer therapy.</p>
<p id="p0025" num="0025">Both indexed may be determined by any assay that measures cell viability, which is well-known in the art, such as for example a MTT assay.</p>
<p id="p0026" num="0026">Confirmation that the sensitization effect is mediated by inhibition of the target gene expression may be assayed by any RNA or protein analysis technique, which is well-known in the art (Northern-blot, Westem-blot, quantitative RT-PCR).</p>
<p id="p0027" num="0027">The siNA molecules according to the invention are defined by reference to the human <i>CYP246</i> or<!-- EPO <DP n="6"> --> <i>CYP4B1</i> gene sequences (Table I); the target sequence corresponds to the portion of the RNA which is complimentary to the antisense region of the siNA molecule.
<tables id="tabl0001" num="0001">
<table frame="all">
<title><b><u>Table I</u>: Genes targeted with the siNA</b></title>
<tgroup cols="4">
<colspec colnum="1" colname="col1" colwidth="23mm"/>
<colspec colnum="2" colname="col2" colwidth="47mm"/>
<colspec colnum="3" colname="col3" colwidth="31mm"/>
<colspec colnum="4" colname="col4" colwidth="20mm"/>
<thead>
<row>
<entry align="center" valign="top"><b>Target gene</b></entry>
<entry align="center" valign="top"><b>GenBank accession number</b></entry>
<entry align="center" valign="top"><b>Target sequence</b></entry>
<entry align="center" valign="top"><b>positions</b></entry></row></thead>
<tbody>
<row>
<entry align="center"><b><i>CYP2A6</i></b></entry>
<entry align="center">NM_000762</entry>
<entry align="center">SEQ ID NO: 64</entry>
<entry align="center">591-609</entry></row>
<row>
<entry align="center"><b><i>CYP4B1</i></b></entry>
<entry align="center">NM_000779</entry>
<entry align="center">SEQ ID NO: 70</entry>
<entry align="center">645-663</entry></row></tbody></tgroup>
</table>
</tables></p>
<p id="p0028" num="0028">The invention encompasses the synthetic, semi-synthetic or recombinant siNAs which inhibit the expression of a target gene from any organism. Given the positions of the targets in the human mRNAs, one skilled in the art will easily find the corresponding positions in the homologous sequences of other organisms (eukaryotes, for example mammals) which arc accessible in the databases such as the NCBI database (<u>http://www.ncbi.nlm.nih.gov/</u>). Such homologous sequences can be identified as is known in the art, for example using sequence alignment. In addition, the siNA molecules of the invention may inhibit the expression of target gene variants, for example polymorphic variants resulting from haplotype polymorphism.</p>
<p id="p0029" num="0029">siNA molecules can be designed to target such homologous sequences, for example using perfectly complementary sequence or by incorporating non-canonical base pairs, for example mismatches and/or wobble base pairs, including flipped mismatches, single hydrogen bond mismatches, trans-type mismatches, triple base interactions and quadruple base interactions, that can provide additional target sequences. For example, the siNA molecule can be designed to target a sequence that is unique to a specific target gene RNA sequence (a single allele or single nucleotide polymorphism (SNP)) due to the high degree of specificity that the siNA molecule requires, to mediate RNA activity. Alternatively, when mismatches are identified, non-canonical<!-- EPO <DP n="7"> --> base-pairs (for example, mismatches and/or wobble bases) can be used to generate siNA molecules that target more than one sequence. In a non-limiling example, non-canonical base-pairs such as uu and cc base pairs are used to generate siNA molecules that are capable of targeting homologous target gene sequences. In this approach, a single siNA can be used to inhibit expression of more than one gene instead of using more than one siNA molecule to target the different genes.</p>
<heading id="h0001"><b><i>Definitions</i></b></heading>
<p id="p0030" num="0030">
<ul id="ul0001" list-style="dash" compact="compact">
<li>"short <u>nucleic acid molecule</u>" refers to a nucleic acid molecule no more than 100 nucleotides in length, preferably no more than 80 nucleotides in length, and most preferably, no more than 50 nucleotides in length.</li>
<li>"<u>interfering nucleic acid molecule"</u> refers to a nucleic acid molecule capable of mediating RNA interference.</li>
<li>"<u>RNA interference"</u> (RNAi) refers to the process of sequence specific post-transcriptional gene silencing, induced by introduction of duplexes of synthetic short nucleic acid molecule in cells, for example, duplexes of synthetic 21-nucleotide RNAs, as first described by <nplcit id="ncit0030" npl-type="s"><text>Elbashir et al., Nature 2001, 411, 494</text></nplcit>- and in the International <patcit id="pcit0001" dnum="WO0175164A"><text>PCT Application WO01/75164</text></patcit>.</li>
<li>"nucleotide" refers to standard ribonucleotides and deoxyribonucleotides including natural bases (adenine, cytosine, guanine, thymine or uracil) and modified nucleotides that are modified at the sugar, phosphate, and/or base moiety.</li>
<li>"<u>Identity</u>" refers to sequence identity between two nucleic acid molecules. Identity can be determined by comparing a position in each sequence which may be aligned for purposes of comparison. When a position in the compared sequence is occupical by the same base, then the molecules are identical at that position. A degree of similarity or identity between nucleic acid or amino acid sequences is a function of the number of identical or matching nucleotides at positions shared by the nucleic acid sequences. Various alignment algorithms and/or programs may be used to calculate the identity between two sequences, including FASTA, or BLAST which are available as a part of the GCG sequence analysis package (University of Wisconsin, Madison, Wis.), and can be used with, e.g., default settings.<!-- EPO <DP n="8"> --></li>
<li>"homologous" refers to a nucleic acid molecule having enough identity to another one to lead to RNA activity, more particularly having at least 70 % identity, preferably 80 % identity and more preferably 90 %.</li>
<li>"<u>complementary</u>" refers to the ability of a nucleic acid to form hydrogen bond(s) by either traditional Watson-Crick base-pairing or other non-traditional type base-pairing. In reference to the nucleic acid molecules of the present invention, the binding free energy for a nucleic acid molecule with its complementary sequence is sufficient to allow the relevant function of the nucleic acid to proceed, e.g., RNAi activity. Determination of binding free energies for nucleic acid molecules is well-known in the art (see, e.g., <nplcit id="ncit0031" npl-type="s"><text>Turner et al., 1987, CSH Symp. Quant. Biol., 1987, LII, pp 123-133</text></nplcit>, <nplcit id="ncit0032" npl-type="s"><text>Frier et al., P.N.A.S., 1986, 83, 9373-9377</text></nplcit>; <nplcit id="ncit0033" npl-type="s"><text>Turner at al., J. Am. Chem. Soc., 1987, 109, 3783-3785</text></nplcit>). A percent complementarity indicates the percentage of contiguous residues in a nucleic acid molecule that can form hydrogen bonds (e.g., Watson-Crick base-pairing) with a second nucleic acid sequence (e.g., 5, 6, 7, 8, 9, or 10 nucleotides out of a total of 10 nucleotides, in the first oligonucleotide being base-paired to a second nucleic acid sequences having 10 nucleotides represents 50 %, 60 %, 70 %, 80 %, 90 % and 100 % complementarity, respectively). "Perfectly complementary" means that all the contiguous residues of a nucleic acid sequence will hydrogen bond with the same number of contiguous residues in a second nucleic acid sequence.</li>
<li>"<u>target gene</u>" refers to a gene whose expression is to be down-regulated, e.g. <i>CYP2A6</i> or <i>CYP4B1</i> gene.</li>
<li>"<u>vecto</u>r" refers to a nucleic acid molecule capable of transporting another nucleic acid to which it has been linked.</li>
<li>"<u>anticancer agent"</u>, "<u>anticancer therapy</u>" refers to broth chemotherapy using cytotoxic agents and radiotherapy.</li>
</ul></p>
<p id="p0031" num="0031">In one embodiment, the invention features an siNA molecule wherein each strand comprises or consists of 15 to about 30 (<i>e.g</i>. about 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30) nucleotides, and each strand comprises at least 15 to about 30 (<i>e.g</i>. about 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 nucleotides) nucleotides that are complementary to the nucleotides of the other strand.<!-- EPO <DP n="9"> --> For example, the siNA molecule of the invention comprises or consists of a 19 to 21nucleotide duplex (19 to 21 base pairs).</p>
<p id="p0032" num="0032">In another embodiment, the invention features an siNA molecule wherein the sense region comprises or consists of a nucleotide sequence having any of SEQ ID NO: 64 and 70 and the antisense region comprises or consists of a nucleotide sequence having any of SEQ ID NO: 101 to 102, respectively. These siNA target the human genes (Table II).
<tables id="tabl0002" num="0002">
<table frame="all">
<title><b><u>Table II:</u> siNA targeting the human genes</b></title>
<tgroup cols="4">
<colspec colnum="1" colname="col1" colwidth="23mm"/>
<colspec colnum="2" colname="col2" colwidth="62mm"/>
<colspec colnum="3" colname="col3" colwidth="38mm"/>
<colspec colnum="4" colname="col4" colwidth="45mm"/>
<thead>
<row>
<entry morerows="1" align="center" valign="top"><b>Target gene</b></entry>
<entry morerows="1" align="center" valign="top"><b>siNA sense strand identification number</b></entry>
<entry namest="col3" nameend="col4" align="center" valign="top"><b>siNA antisense strand</b></entry></row>
<row>
<entry align="center" valign="top"><b>Identification number</b></entry>
<entry align="center" valign="top"><b>sequence</b></entry></row></thead>
<tbody>
<row>
<entry align="center"><b><i>CYP2A6</i></b></entry>
<entry align="center">SEQ ID NO: 64</entry>
<entry align="center">SEQ ID NO: 101</entry>
<entry>5'-ugacaggaacucuuugucc-3'</entry></row>
<row>
<entry align="center"><b><i>CYP4B1</i></b></entry>
<entry align="center">SEQ ID NO: 70</entry>
<entry align="center">SEQ ID NO: 102</entry>
<entry>5'-aucgcugacugcaagguag-3'</entry></row></tbody></tgroup>
</table>
</tables></p>
<p id="p0033" num="0033">In another embodiment of the invention, the siNA molecule comprises overhanging nucleotide(s) at one or both end(s), preferably, 1 to about 3 (e.g. about 1, 2, or 3) overhanging nucleotides. The overhanging uleotides which are advantageously at the 3' end of each strand, are preferably, 2'-deoxynucleotide(s), preferably 2'deoxypyrimidine(s), such as a 2'-deoxythymidine(s). For example, the siNA molecule of the invention is a 19 to 21-nucleotide duplex with 3'-terminal a overhang(s).</p>
<p id="p0034" num="0034">In another embodiment of the invention, the siNA molecule comprises blunt end(s), where both ends are blunt, or alternatively, where one of the ends is blunt.<!-- EPO <DP n="10"> --></p>
<p id="p0035" num="0035">In another embodiment of the invention, the siNA molecule is assembled from two separate oligonucleotide fragments or strands, wherein one fragment (sense strand) comprises the sense region and the second fragment (antisense strand) comprises the antisense region of the siNA molecule.</p>
<p id="p0036" num="0036">In another embodiment, the invention features an siNA molecule wherein the sense region is connected to the antisense region via a linker molecule, such as a nucleotide or non-nucleotide linker. A nucleotide linker can be a linger of at least 2 nucleotides in length, for example about 3, 4, 5, 6, 7, 8, 9, or 10 nucleotides in length. Examples of such siNA molecules include small hairpin nucleic acid (shNA) molecules.</p>
<p id="p0037" num="0037">A non-nucleotide linker comprises abasic nucleotides, aptamers, polyether, polyamine, polyamide, peptide, carbohydrate, lipid, polyhydrocarbon, or other polymeric compounds.</p>
<p id="p0038" num="0038">In another embodiment of the invention SiNA molecule comprises mismatches, bulges, loops or wobble base pairs to modulate the activity of the siNA molecule to mediate RNA interference.</p>
<p id="p0039" num="0039">In another embodiment of the invention, the siNA molecule comprises or consists of ribonucleotide(s) (2*-OH nucleotides).</p>
<p id="p0040" num="0040">In addition, the siNA molecule may include one or more modification which increase resistance to nuclease degradation <i>in vivo</i> and/or improve cellular uptake. The siNA may include nucleotides which are modified at the sugar, phosphate, and/or base moiety, and/or modifications of the 5' or 3' end(s), or the internucleotidic linkage.</p>
<p id="p0041" num="0041">In another embodiment of the invention, the siNA molecule comprises one or more modified pyrimidine and/or purine nucleotides, preferably on each strand of the double-stranded siNA. More preferably, said modified nucleotides are selected from the group consisting of: 2'-O-methylnucleotides, 2'-O-methoxyethylnucleotides, deoxynucleotides, such as 2'-deoxynucleotides and 2',deoxy-2'-fluoronucleotides, universal base nucleotides, acyclic nucleotides and 5-C-methyl nucleotides, An siNA molecule of the invention can generally comprise about 5 % to about 100 % modified nucleotides (e.g., about 5 %, 10 %, 15 %, 20 %, 25 %, 30 %, 35 %, 40 %, 45 %, 50%, 55 %, 60 %, 65 %, 70 %, 75 %, 80 %, 85 %, 90 %, 95 % or 100 % modified<!-- EPO <DP n="11"> --> nucleotides). The actual percentage of modified nucleotides present in a given siNA molecule will depend on the total number of nucleotides present in the siNA molecule. The percent modification can be based upon the total number of nucleotides present in the sense strand, antisense strand or both the sense and the antisense strands.</p>
<p id="p0042" num="0042">In another embodiment, the invention features an siNA molecule wherein the strand comprising the sense region (sense strand) includes a terminal cap moiety at the 5'-end, the 3'-end, or both the 5' and 3'ends of the strand, preferably a deoxy abasic moiety or glyceryl moiety.</p>
<p id="p0043" num="0043">In another embodiment, the invention features an siNA molecule wherein the strand comprising said antisense region (antisense strand) includes a phosphate group at the 5'-end.</p>
<p id="p0044" num="0044">In another embodiment of the invention, the siNA molecule comprises at least one modified internucleotidic linkage, such as a phosphorothioate linkage.</p>
<p id="p0045" num="0045">The siNA molecules according to the invention may be produced by chemical synthesis by using well-known oligonucleotides synthesis methods which make use of common nucleic acid protecting and coupling groups, such as dimethoxytrityl at the 5'-end and phosphoramidites, at the 3' end. The nucleic acid molecules of the present invention can be modified to enhance stability by modification with nuclease resistant groups, for example 2'-amino, 2'-C-allyl, 2'-fluoro, 2'-O-methyl, 2'-H (for a review see <nplcit id="ncit0034" npl-type="s"><text>Usman and Cedergen, TIBS, 1992, 17, 34</text></nplcit> and <nplcit id="ncit0035" npl-type="s"><text>Usman et al., Nucleic Acids Symp. Ser., 1994, 31, 163</text></nplcit>). Examples of such modified oligonucleotides include with no limitation: 2' F-CTP, 2' F-UTP, 2' NH<sub>2</sub>-CTP, 2' NH<sub>2</sub>-UTP, 2' N<sub>3</sub>-CTP, 2-thio CTP, 2-thio UTP, 4-thio UTP, 5-indo CTP, 5-iodo UTP, 5-bromo UTP, 2-chloro ATP, adenosine 5'-(1-thiotriphosphate), cytidine 5'-(1-thiotriphosphate), guanosine-5'-(1-thiotriphosphate), oridine-5'-(1-thiotriphosphate), pseudo-UTP, 5-(3-aminoallyl)-UTP and 5-(3-aminoallyl)-dUTP. siNA contructs can be purified by gel electrophoresis using general methods or can be purified by high pressure liquid chromatography (HPLC) and re-suspended in water.</p>
<p id="p0046" num="0046">The chemically-synthesized siNA molecule according to The invention may be assembled from two distinct oligonucleotides which are synthesized separately. Alternatively, both strands of the siNA molecule may be synthesized in tandem using a cleavable linker, for example a succinyl-based linker.<!-- EPO <DP n="12"> --></p>
<p id="p0047" num="0047">Alternatively, the siNA molecules of the invention may he expressed (<i>in vitro</i> or <i>in vivo</i>) from transcription units inserted into DNA or RNA vectors known to those skilled in the art and commercially available.</p>
<p id="p0048" num="0048">The invention relates also to a transcription unit comprising: a transcription initiation region, a transcription tennination region, and a nucleic acid sequence encoding at least one siNA molecule according to the present invention, wherein said nucleic acid sequence is operably linked to said initiation region in a manner that allows expression and/or delivery of the siNA molecule.</p>
<p id="p0049" num="0049">The nucleic acid sequence may encode one or both strands of the siNA molecule, or a single self-complementary strand that self-hybridizes into an siNA duplex.</p>
<p id="p0050" num="0050">The transcription initiation region may be from a promoter for a eukaryotic DNA polymerase I, II or III (pol I, II or III). Transcripts from pol II or pol III promoters are expressed at high levels in all cells. Alternatively, prokaryotic RNA polymerase promoters may be used, providing that prokaryotic RNA polymerase enzyme is expressed in the appropriate cells. transcription units derived from genes encoding U6 small nuclear transfer RNA and adenovirus VA RNA are useful in generating high concentrations of desired siNA in cells.</p>
<p id="p0051" num="0051">The invention concerns also an expression vector comprising a nucleic acid encoding at least one siNA molecule of the instant invention. The expression vector may encode one or both strands of the siNA molecule, or a single self-complementary strand that self hybridizes into an siNA duplex. The nucleic acid encoding the siNA molecule of the instant invention is preferably inserted in a transcription unit as defined above.</p>
<p id="p0052" num="0052">Large numbers of DNA or RNA vectors suitable for siNA molecule expression are known to those of skill in the art and commercially available. The recombinant vectors can be DNA plasmids or viral vectors. SiNA expressing viral vectors can be constructed based on, but not limited to, adeno-associated virus, retrovirus, adenovirus or alphavirus. The recombinant vectors capable of expressing the siNA molecules can be delivered <i>in vivo</i>, and persist in target cells, Alternatively, viral vectors can be used to provide transient expression of siNA molecules.<!-- EPO <DP n="13"> --></p>
<p id="p0053" num="0053">The invention concerns also eukaryotic or prokaryotic cells which are modified by a vector as defined above.</p>
<p id="p0054" num="0054">The invention concerns also a pharmaceutical composition comprising at least an siNA molecule or an expression vector, as defined above, in an acceptable carrier, such as stabilizer, buffer and the like.</p>
<p id="p0055" num="0055">A pharmaceutical composition or formulation refers to a form suitable for administration, e.g., systemic or local administration, into a cell or subject, including for example a human. Suitable forms, in part, depend upon the use or the route of entry, for example oral, inhalation, or by injection. These compositions or formulations are prepared according to any method known in the art for the manufacture of pharmaceutical compositions.</p>
<p id="p0056" num="0056">In one embodiment, the invention features a composition wherein the siNA molecule or vector is associated to a compound that allows the delivery of the siNA/vector into cancer celld, The compound may be a membrane peptide, transporter, lipid, hydrophobic moiety, cationic polymer, PEI. Examples of membrane peptides include those able to cross the blood-brain barrier, such as with no limitation the Pep:Trans<sup>™</sup> (<u>http://www.syntem.com/english/techpeptrans.html</u>). Preferably, the siNA and the compound are formulated in microspheres, nanoparticules or liposomes. Furthermore, the siNA molecule or vector may be associated with a compound that allows a specific targeting of the tumor, such as a ligand of a cell-surface antigen or receptor, for example a peptide or an antibody specific for said antigen/receptor (e.g., PS100, PDGFR, erb-B2).</p>
<p id="p0057" num="0057">In another embodiment, the invention features a composition comprising a combination of at least two different siNA molecules.</p>
<p id="p0058" num="0058">In another embodiment, the invention features a composition wherein the siNA molecule or vector is associated with at least one anticancer drug.</p>
<p id="p0059" num="0059">The invention also concerns an siNA molecule or a vector as defined above, as a medicament.</p>
<p id="p0060" num="0060">The invention concerns also the use of an siNA molecule or a vector as defined above, for the manufacture of a medicament for treating cancer.<!-- EPO <DP n="14"> --></p>
<p id="p0061" num="0061">The cancer may be or any type. Preferably, the cancer is a solid tumor, for example brain tumors such as astrocytomas, glioblastomas, oligodendrogliomas or mixed tumors.</p>
<p id="p0062" num="0062">In one embodiment of said use, the siNA molecule or vector is associated with an anticancer drug.</p>
<p id="p0063" num="0063">The invention concerns also a product containing at least one siNA molecule or vector as defined above, and an anticancer drug, as a combined preparation for simultaneous, separate or sequential use in anticancer therapy.</p>
<p id="p0064" num="0064">The anticancer drugs which are used in combination with the siNA molecule or the vector according to the invention are those commonly used in chemotherapy, and include cytotoxic agents, such as alkylating agents and antimetabolites.</p>
<p id="p0065" num="0065">Preferred anticancer drugs are alkylating agents, such as: cisplatin (cis-diaminedicloroplannum, CDDP or DDP), temozolomide, fotemustine, procarbazine, lomustine and vincristine.</p>
<p id="p0066" num="0066">In addition, the siNA molecule according to the invention may be used in combination with other conventional anticancer therapies including radiotherapy, immunotherapy and surgery.</p>
<p id="p0067" num="0067">A pharmaceutically effective dose is that dose required to prevent, inhibit the occurrence or treat (alleviate a symptom to some extent, preferably all the symptoms) of a disease or state. The pharmaceutically effective dose of the siNA depends upon the type of cancer, the composition used, the route of administration, the type of mammal being treated, the physical characteristics of the specific mammal under consideration, concurrent medication, and other factors, that those skilled in the medical arts will recognize. Generally, an amount between 0.1 mg/kg and 100 mg/kg body weight/day of active ingredients is administered.</p>
<p id="p0068" num="0068">The siNA of the invention may be administered by a single or multiple route(s) chosen from: local (intratumoral, for example, intracerebral (irtrathecal, intraventricular)), parenteral (percutaneous, subcutaneous, intravenous, intramuscular, intraperitoneal), oral, sub-lingual, or inhalation.<!-- EPO <DP n="15"> --></p>
<p id="p0069" num="0069">When the siNA molecule or vector is used in combination with chemotherapy or radiotherapy, it is preferably administered immediately prior to the anticancer agent or several hours (2 to 48 hours) before.</p>
<p id="p0070" num="0070">In addition to the preceding features, the invention further comprises other features which will emerge from the description which follows, which refers to examples illustrating the siNA molecules and their uses according to the invention, as well as to the appended drawings in which:
<ul id="ul0002" list-style="dash" compact="compact">
<li><figref idref="f0001">Figure 1</figref> illustrates the screening of DNA-repair genes in human glioma (GHD cells). Cells were seeded in 96-well plates, transfected with siRNA after 24 h and treated with Cisplatin (CODS) after 48 h. 96 hours post treatment, alive cell number was evaluated with MTT. 1<i>: ERCC2,</i> 2: <i>RAD54L,</i> 3: <i>LIGI,</i> 4: <i>MUTYH 5</i>: <i>PNKP,</i> 6: <i>POLDI,</i> 7: <i>REV7(MAD</i>2<i>L</i>2)<i>,</i> 8: MGC13170, 9: <i>RUVBL2,</i> G: GFP. The proportion of a cell population that survives to chemotherapy is evaluated by the chemoresistanre index (CI): cell number (OD) with chemotherapy / cell number (OD) in control condition. CI for each siRNA was compared with control CI (siRNA GFP). Data represented the mean of 3 independent experiments. CI is inferior to CI<sub>GFP</sub> (0.5 or 50%) when siRNA transfection improves chemosensitivity and superior to CI<sub>GFP</sub> (grey) when it increases chemoresistance. While square corresponds to siRNA with low toxicity (&lt; 35 % cell death without cisplatin) and with chemosensitization properties.</li>
<li><figref idref="f0002">Figure 2</figref> illustrates drug sensitization by siRNAs targeting four DNA repair genes : <i>ERCC1, ERCC2, MUTYH</i>, and <i>PNKP</i>. SiRNAs were transfected in 6 different astrocytoma derived cell lines treated with CDDP or temozolomide (TMZ). DS corresponds to chemosensitivity induced by siRNA. siRNA targeting ERCC1 was included for comparison. Data represented the mean of 3 independent experiments. Only significant results were reported (* p &lt;0.05; ** p &lt; 0.01).</li>
<li><figref idref="f0003">Figure 3</figref> illustrates the effect of siRNAs targeting two cytochrome P450 isoforms (CYP2A6 and CYP4B1) on the chemosensitization of astrocytoma cells. SiRNAs were transfected in U373 cell line treated with CDDP. The chemoresistance indice (CI) for each siRNA was compared with control CI (siRNA GFP). siRNA targeting ERCCI was included for comparison. Data represented the mean of 3 independent experiments.</li>
</ul><!-- EPO <DP n="16"> --></p>
<heading id="h0002"><b><u>Example 1:</u> siRNA directed to 1p/19q DNA repair genes are able to sensitize cancer cells to chemotherapy</b></heading>
<heading id="h0003"><b>1) Material and Methods</b></heading>
<heading id="h0004">a) <u>Cell culture</u></heading>
<p id="p0071" num="0071">U87, U373, U138, CCF and LN229 cells deriving from human astrocytoma were purchased from American Type Culture Collection (ATCC). GHD cell line derived from a human astrocytoma biopsy, was checked by fluorescence <i>in situ</i> hybridization, chromosome 7 polysomy, chromosome 10 monosomy and immuno-histo-chemistry. Cells were maintained in DMEM (CAMBREX BIOSCIENCES), 10 % FCS (v/v; ABCYS), and incubated in a humidified atmosphere with 5% CO<sub>2</sub>, at 37 °C.</p>
<heading id="h0005">b) <u>Inhibition of gene expression with siRNA</u></heading>
<p id="p0072" num="0072">Three to five siRNA pairs were designed for each candidate gene and prepared into duplex form (EUROGENTEC). siRNAs targeting the Green Fluorescent Protein (GFP) and the ERCC1 protein were used as control siRNAs. 24 hours after cell seeding (96 well plates), siRNA (150 nM) were transfected with Oligofectamine™ (Invitrogen), according to the manufacturer's instructions. Each condition (siRNA) was tested in 3 independent experiments, each time in hexaplicate.</p>
<heading id="h0006">c) <u>Cell survival and chemoresistance</u></heading>
<p id="p0073" num="0073">Cells were seeded in 96 well plates, transfected with siRNA after 24 h and treated with cisplatine (CDDP, MERCK, 5 µM final concentration) or termolomide (TMZ, SCHERING-PLOUGH, 1 µM final concentration) after 48 h. Cell survival was determined 96 hours post-treatment, by measuring mitochondrial succinate dehydrogenase activity, with 3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT, SIGMA) added to a final concentration of 0.5 mg/ml into culture medium. Cultule medium was discarded after 4 h of incubation with MTT and formazon crystals were dissolved in DMSO/ethanol (50/50, v/v). Optical density was read at 540 nm. Chemoresistance was related to an index (CI) corresponding to the proportion of a cell population that survived to chemotherapy. It was calculated as follows: cell number (OD) with chemotherapy / cell number (OD) in control condition. The benefit of siRNA transfection was represented by the siRNA-induced drug sensibilization index (DS) which corresponds to the cell population (%) that survived to a simple chemotherapy treatment but died in response to the same<!-- EPO <DP n="17"> --> treatment with a siRNA transfection. It was calculated as follows: (CI <sub><b>siRNA</b> GFP</sub>- CI <sub>siRNA x</sub>) / CI <sub>siRNA GFP</sub> x 100. Significant differences between series were tested by ANOVA with Statview (SAS institute). Differences were considered significant when p &lt; 0.05 (*) and very significant when p &lt; 0.01 (**).</p>
<heading id="h0007">d) <u>Q-RT PCR</u></heading>
<p id="p0074" num="0074">RNAs were extracted on silica column (Nucleospin™, MACHEREY-NAGEL). RNAs were reverse transcribed using the M-MLV reverse transcriptase RNase H minus enzyme (Promega) and oligodT as a primer, at 40°C during 1.5 hours. After reverse transcription, cDNAs were purified (Mini Elute, PCR Purification Kit™, QIAGEN) and assayed by quantitative PCR using the HotStar Reaction mix (ROCHE). using a pair of primers specific for the candidate gene and the reference gene <i>ERCCI</i> (Table III). Measurements were carried out on a Light Cycler thermo-cycler (ROCHE).
<tables id="tabl0003" num="0003">
<table frame="all">
<title><b><u>Table III:</u> qRT-PCR primers sequences</b></title>
<tgroup cols="6">
<colspec colnum="1" colname="col1" colwidth="29mm"/>
<colspec colnum="2" colname="col2" colwidth="17mm"/>
<colspec colnum="3" colname="col3" colwidth="36mm"/>
<colspec colnum="4" colname="col4" colwidth="23mm"/>
<colspec colnum="5" colname="col5" colwidth="33mm"/>
<colspec colnum="6" colname="col6" colwidth="30mm"/>
<thead>
<row>
<entry align="center" valign="middle"><b>Gene</b></entry>
<entry align="center" valign="middle"><b>Primer</b></entry>
<entry align="center" valign="middle"><b>Sequence (5'-3')</b></entry>
<entry align="center" valign="middle"><b>SEQ ID NO</b>:</entry>
<entry align="center" valign="middle"><b>Annealing temperature (°C)</b></entry>
<entry align="center" valign="middle"><b>Product size (bp)</b></entry></row></thead>
<tbody>
<row>
<entry morerows="1" valign="middle"><b><i>Cyclophyline A</i></b></entry>
<entry valign="middle">Forvard</entry>
<entry valign="middle">ttcatctgcactgecaagac</entry>
<entry align="center" valign="middle">1</entry>
<entry morerows="1" align="center" valign="middle">61.8</entry>
<entry morerows="1" align="center" valign="middle">158</entry></row>
<row>
<entry valign="middle">Reverse</entry>
<entry valign="middle">togagttgtcacagtcagc</entry>
<entry align="center" valign="middle">2</entry></row>
<row>
<entry morerows="1" valign="middle"><b><i>ERCC1</i></b></entry>
<entry valign="middle">Forward</entry>
<entry valign="middle">ggcgacgtsattccogacta</entry>
<entry align="center" valign="middle">3</entry>
<entry morerows="1" align="center" valign="middle">61.8</entry>
<entry morerows="1" align="center" valign="middle">121</entry></row>
<row>
<entry valign="middle">Reverse</entry>
<entry valign="middle">agttcttccecaggctctgc</entry>
<entry align="center" valign="middle">4</entry></row>
<row>
<entry morerows="1" valign="middle"><b><i>ERCC2</i></b></entry>
<entry valign="middle">Forward</entry>
<entry valign="middle">cggaactstgggaacctccl</entry>
<entry align="center" valign="middle">5</entry>
<entry morerows="1" align="center" valign="middle">64.0</entry>
<entry morerows="1" align="center" valign="middle">200</entry></row>
<row>
<entry valign="middle">Reverse</entry>
<entry valign="middle">tacttelccagggcgacact</entry>
<entry align="center" valign="middle">6</entry></row>
<row>
<entry morerows="1" valign="middle"><b><i>MUTYH</i></b></entry>
<entry valign="middle">Forward</entry>
<entry valign="middle">glcclgacgtggaggagtgt</entry>
<entry align="center" valign="middle">7</entry>
<entry morerows="1" align="center" valign="middle">64.0</entry>
<entry morerows="1" align="center" valign="middle">200</entry></row>
<row>
<entry valign="middle">Reverse</entry>
<entry valign="middle">cctctgcaccagcwaattt</entry>
<entry align="center" valign="middle">8</entry></row>
<row>
<entry morerows="1" valign="middle"><b><i>PNKP</i></b></entry>
<entry valign="middle">Ferward</entry>
<entry valign="middle">tcgaaagatgacggactcct</entry>
<entry align="center" valign="middle">9</entry>
<entry morerows="1" align="center" valign="middle">64.0</entry>
<entry morerows="1" align="center" valign="middle">20G</entry></row>
<row>
<entry valign="middle">Reverse</entry>
<entry valign="middle">tttattgtggaggggagctg</entry>
<entry align="center" valign="middle">10</entry></row></tbody></tgroup>
</table>
</tables></p>
<p id="p0075" num="0075">Measures were performed twire from each cell sample, and results were expressed as the mean of at least three independent samples (originating from independent <i>in vitro</i> experiments).</p>
<heading id="h0008"><b>2) Results</b></heading>
<heading id="h0009"><u>a) Identification of DNA repair genes potentially involved in chemoresistance of astrocytoma cells</u></heading>
<p id="p0076" num="0076">Genes potentially responsible for chemoresistance of astrocytoma, were screened from the chromosomic area commonly considered as correlated with<!-- EPO <DP n="18"> --> oligodendroglioma chemosensitivity (1p36-1p32 and 19q13.2-19q13.4; <nplcit id="ncit0036" npl-type="s"><text>Smith et al., Oncogene, 1999, 18, 4144-4152</text></nplcit>). Gene sequences were retrieved from data bases on the web (<u>http://www.nebi.nebi.nlm.nih.gov/PubMed/ ; http://www.ensembl.org ; http://www.egal.ienet.uk/DNA Repair Genes.html;</u> Supplement to the paper by<nplcit id="ncit0037" npl-type="s"><text> Wood et al., Mutant. Res., 2005, 577, 275-283</text></nplcit>) and published data (<nplcit id="ncit0038" npl-type="s"><text>Harris, A.L., Int J Radiat Biol Relat Stud Phys Chem Med, 1985, 48, 675-90</text></nplcit> ; <nplcit id="ncit0039" npl-type="s"><text>Christmann et al., Toxicology, 2003, 193, 3-34</text></nplcit> ; <nplcit id="ncit0040" npl-type="s"><text>Wood et al., Mutat. Res., 2005, 577, 275-283</text></nplcit>). Eight genes belonging to different repair systems were selected (Table IV).
<tables id="tabl0004" num="0004">
<table frame="all">
<title><b><u>Table IV:</u> List of DNA repair-associated genes located on 1p/19q LOH regions</b></title>
<tgroup cols="4">
<colspec colnum="1" colname="col1" colwidth="32mm"/>
<colspec colnum="2" colname="col2" colwidth="45mm"/>
<colspec colnum="3" colname="col3" colwidth="34mm"/>
<colspec colnum="4" colname="col4" colwidth="31mm"/>
<thead>
<row>
<entry align="center"><b>DNA repair genes</b></entry>
<entry align="center"><b>DNA repair system</b></entry>
<entry align="center"><b>Accession number</b></entry>
<entry align="center"><b>Localizatio</b>n</entry></row></thead>
<tbody>
<row rowsep="0">
<entry><i>LIG1</i></entry>
<entry>NER</entry>
<entry>NM_000234</entry>
<entry>19q13.2-3</entry></row>
<row rowsep="0">
<entry><i>ERCC2 (XPD)</i></entry>
<entry>NER</entry>
<entry>NM_000400</entry>
<entry>19q13.3</entry></row>
<row rowsep="0">
<entry><i>POLDI</i></entry>
<entry>NER and MMR**</entry>
<entry>NM_002691</entry>
<entry>19q13.3</entry></row>
<row rowsep="0">
<entry><i>RUVBL2</i></entry>
<entry>Homologous Recombination</entry>
<entry>NM_006666</entry>
<entry>19q13.3</entry></row>
<row rowsep="0">
<entry><i>PNKP</i></entry>
<entry>BER**</entry>
<entry>NM_007254</entry>
<entry>19q13.3-4</entry></row>
<row rowsep="0">
<entry><i>RAD 54L</i></entry>
<entry>Homologous Recombination</entry>
<entry>NM_003579</entry>
<entry>1p32</entry></row>
<row rowsep="0">
<entry><i>MUTYH</i></entry>
<entry>BER</entry>
<entry>NM_012222</entry>
<entry>1p34.3</entry></row>
<row>
<entry><i>MAD2L2 (REV7)</i></entry>
<entry>DNA polymerase</entry>
<entry>NM_006341</entry>
<entry>1p36</entry></row></tbody></tgroup>
<tgroup cols="4" rowsep="0">
<colspec colnum="1" colname="col1" colwidth="32mm"/>
<colspec colnum="2" colname="col2" colwidth="45mm"/>
<colspec colnum="3" colname="col3" colwidth="34mm"/>
<colspec colnum="4" colname="col4" colwidth="31mm"/>
<tbody>
<row>
<entry namest="col1" nameend="col4" align="justify">* NER: Nucleotide Excision Repair<br/>
** NMR: Nucleotide Mismatch repair<br/>
*** BER: Base excision repair</entry></row></tbody></tgroup>
</table>
</tables></p>
<heading id="h0010">b) <i>In vitro</i> chemosensitivity assay</heading>
<p id="p0077" num="0077">An <i>in vitro</i> assay for the siRNAs high-throughput screening, was developed to find out which genes (Table IV) are implicated in glioma chemoresistance mechanisms. The cell number after chemotherapy and siRNA transfection was measured to have a global chemosensitization evaluation, defined as a significant increased cell death compared with the effect of the drug alone. In a first series of experiments, the following conditions et the assay were established: (I) drug and siRNA treatment protocols, (ii) specific temporal sequence of cell seeding and drug treatment, (iii) siRNA transaction, (iii) cell viability measurement. CDDP was chosen because it is an alkylating agent harboring a very reproducible activity <i>in vitro.</i> Most, if not all, cell damages occurred during the first hour of drug treatment since one and 24 hour(s) incubations were equally efficient. Moreover, it was established that the mRNA amount was the lowest 24 and 48 hours after siRNA transfection. Altogether, these data suggested that siRNAs had to be added prior to the drug.<!-- EPO <DP n="19"> --></p>
<heading id="h0011">c) Screening of DNA-repair genes involved in chemoresistance of astrocytoma cells</heading>
<p id="p0078" num="0078">The screening was performed in three steps. First siRNAs targeting candidate genes were screened on one cell line and results were confirmed at statistic level in further experiments. The study was then extended to six astrocytoma-derived cell lines and the siRNAs were validated at molecular level. Finally, the study was extended to a second chemotherapy agent.</p>
<p id="p0079" num="0079">The eight DNA-repair genes located in the 1p/19q (Table IV) were screened with live different siRNAs by gene, on the GHD cell line. The siRNAs sequences are presented in Table V. One siRNA specific for GFP and one siRNA specific for ERCCI were used as controls.
<tables id="tabl0005" num="0005">
<table frame="all">
<title><b><u>Table V</u>: SiRNAs sequences</b></title>
<tgroup cols="3">
<colspec colnum="1" colname="col1" colwidth="18mm"/>
<colspec colnum="2" colname="col2" colwidth="50mm"/>
<colspec colnum="3" colname="col3" colwidth="21mm"/>
<thead>
<row>
<entry valign="top"><b>Gene</b></entry>
<entry valign="top"><b>siRNA sequence*(1) (2)</b></entry>
<entry align="center" valign="top"><b>SEQ ID NO:</b></entry></row></thead>
<tbody>
<row>
<entry><b><i>ERCC2</i></b></entry>
<entry><b>5'-ggacgucgaugggaaaugc-3'</b></entry>
<entry align="center"><b>11</b></entry></row>
<row>
<entry/>
<entry>5'-agacggugcucaggaucaa-3'</entry>
<entry align="center">12</entry></row>
<row>
<entry/>
<entry><b>5'-ucaucaucgagcccuuuga-3'</b></entry>
<entry align="center"><b>13</b></entry></row>
<row>
<entry/>
<entry>5'-ggaacaagcugcucuuuau-3'</entry>
<entry align="center">14</entry></row>
<row>
<entry/>
<entry><b>5'-ugacuuucuuaccuucgau-3'</b></entry>
<entry align="center"><b>15</b></entry></row>
<row>
<entry><i>LIG1</i></entry>
<entry>5'-agacgcucagcagcuucuu-3'</entry>
<entry align="center">16</entry></row>
<row>
<entry/>
<entry>5'-gaagauagacaucaucaaa-3'</entry>
<entry align="center">17</entry></row>
<row>
<entry/>
<entry>5'-agacagcagagcccagaaa-3'</entry>
<entry align="center">18</entry></row>
<row>
<entry/>
<entry>5-gcagacguucugcgagguu-3'</entry>
<entry align="center">19</entry></row>
<row>
<entry/>
<entry>5'-gcagauccagccauuccaa-3'</entry>
<entry align="center">20</entry></row>
<row>
<entry><i>MAD2L2</i></entry>
<entry>5'-gaagaaugauguggagaa-3'</entry>
<entry align="center">21</entry></row>
<row>
<entry/>
<entry>5'-gacucgcuguugucucaug-3'</entry>
<entry align="center">22</entry></row>
<row>
<entry/>
<entry>5'-cucgcaacaugcagaagau-3'</entry>
<entry align="center">23</entry></row>
<row>
<entry/>
<entry>5'-gaagauccaggucaucaag-3'</entry>
<entry align="center">24</entry></row>
<row>
<entry/>
<entry>5'-uggagcaggauguccacaug-3'</entry>
<entry align="center">25</entry></row>
<row>
<entry><i>MUTYH</i></entry>
<entry>5'-gaagcaugcuaagaacaac-3'</entry>
<entry align="center">26</entry></row>
<row>
<entry/>
<entry>5'-ugggaugauugcugagugu-3'</entry>
<entry align="center">27</entry></row>
<row>
<entry/>
<entry>5'-gcacccuuguuucccagca-3'</entry>
<entry align="center">28</entry></row>
<row>
<entry/>
<entry>5'-gguuguccacaccuucucu-3'</entry>
<entry align="center">29</entry></row>
<row>
<entry/>
<entry><b>5'-gcugacauaucaaguauau-3'</b></entry>
<entry align="center"><b>30</b></entry></row><!-- EPO <DP n="20"> -->
<row>
<entry><b><i>PNKP</i></b></entry>
<entry><b>5'-cacacuguauuuggucaau-3'</b></entry>
<entry align="center"><b>31</b></entry></row>
<row>
<entry/>
<entry>5'-agagacccgcacaccagaa-3'</entry>
<entry align="center">32</entry></row>
<row>
<entry/>
<entry>5'-gaaucuuguacccagagau-3'</entry>
<entry align="center">33</entry></row>
<row>
<entry/>
<entry>5'-aguccaccuuucucaagaa-3'</entry>
<entry align="center">34</entry></row>
<row>
<entry/>
<entry>5'-caaccgguuucgagagaug-3'</entry>
<entry align="center">35</entry></row>
<row>
<entry><i>POLD1</i></entry>
<entry>5'-ggagauggaggcagaacac-3'</entry>
<entry align="center">36</entry></row>
<row>
<entry/>
<entry>5'-guuggagauugaccauuau-3</entry>
<entry align="center">37</entry></row>
<row>
<entry/>
<entry><b>5'-ucaccgguuacaacaucca-3'</b></entry>
<entry align="center"><b>38</b></entry></row>
<row>
<entry/>
<entry>5'-cuuagacuccaccagcugc-3'</entry>
<entry align="center">39</entry></row>
<row>
<entry/>
<entry>5'-auucagaugggauaccucc-3'</entry>
<entry align="center">40</entry></row>
<row>
<entry><i>RAD54L</i></entry>
<entry>5'-ccagcauugugaauagaug-3'</entry>
<entry align="center">41</entry></row>
<row>
<entry/>
<entry>5'-ucaccucgcuaaagaagcu-3'</entry>
<entry align="center">42</entry></row>
<row>
<entry/>
<entry>5'-ggagcuguuuauccuggau-3'</entry>
<entry align="center">43</entry></row>
<row>
<entry/>
<entry>5'-ugaucugcuugaguauuuc-3'</entry>
<entry align="center">44</entry></row>
<row>
<entry/>
<entry>5'-gcagugagacccagaucca-3'</entry>
<entry align="center">45</entry></row>
<row>
<entry><b><i>RUVBL2</i></b></entry>
<entry><b>5'-aucuucucccuggagauga-3'</b></entry>
<entry align="center"><b>46</b></entry></row>
<row>
<entry/>
<entry>5'-acugacccucaagaccaca-3'</entry>
<entry align="center">47</entry></row>
<row>
<entry/>
<entry>5'-acgcaaggguacagaagug-3'</entry>
<entry align="center">48</entry></row>
<row>
<entry><i>GFP</i></entry>
<entry>5'-gacguaaacggccacaaguuc-3'</entry>
<entry align="center">49</entry></row>
<row>
<entry><b><i>ERCC1</i></b></entry>
<entry><b>5'-ggagcuggcuaagaugugu-3'</b></entry>
<entry align="center"><b>50</b></entry></row></tbody></tgroup>
<tgroup cols="3" rowsep="0">
<colspec colnum="1" colname="col1" colwidth="18mm"/>
<colspec colnum="2" colname="col2" colwidth="50mm"/>
<colspec colnum="3" colname="col3" colwidth="21mm"/>
<tbody>
<row>
<entry namest="col1" nameend="col3" align="justify">(1) siRNA sequences are defined by the sequence of the sense strand. The antisense strand is perfectly complementary to the sense strand. SiRNAs responsible for a significant sensitization effect arc in bold.<br/>
(2) Said sequences comprise a 3'-terminal tt overhang.</entry></row></tbody></tgroup>
</table>
</tables></p>
<p id="p0080" num="0080">Cell viability was measured in absence and in presence of CDDP. SiRNAs were selected on the basis of two criteria: the absence of basal toxicity and their efficiency to improve chemotherapy treatment. Toxic siRNAs inducing more than 35 % cell death after transfection (without CDDP) were discarded. In contrast, those increasing cell death were retained. An siRNA increased chemosensitivity when its chemoresistance index (CI) was lower than GFP siRNA CI, ie lower than 0.5. In <figref idref="f0001">figure 1</figref>, the white square corresponds to siRNA with low toxicity and with chemo-sensitization properties. Eight siRNAs out of 38 matched with these criteria, corresponding to 5 genes: <i>ERCC2, MUTYH, PNKP, FOLD1,</i> and <i>RUVBL2</i> (<figref idref="f0001">figure 1</figref>).<!-- EPO <DP n="21"> --> Only one sequence of <i>MUTYH, PNKP, RUVBL2</i> and <i>POLD1</i> (SEQ ID NO: 30, 31, 38 and 46) siRNAs increased chemosensitivity while 4 (SEQ ID NO: 11, 13, 14 and 15) out of 5 sequences targeting <i>ERCC2</i> fulfilled these conditions.</p>
<p id="p0081" num="0081">The most efficient siRNA for each of these genes was transfected in 6 different glioma derived cell lines treated with CDDP or temozolomide (TMZ). CIs for each siRNA were compared with control CI (siRNA GFP). The results confirmed that three siRNAs targeting <i>ERCC2, MUTYH</i> and <i>PNKP,</i> respectively, had a significant chemo-sensitization effect on astrocytoma cells (<figref idref="f0002">figure 2</figref>). The three siRNAs were equally efficient (up to 17%) on 3 (<i>ERCC2</i>) or 2 (<i>MUTYH</i> and <i>PNKP</i>) cell lines (<figref idref="f0002">figure 2</figref>). When combined by 2 or 3, siRNAs did not show any greater efficiency. By comparison, inhibition of <i>ERCC1</i> was more potent to sensitize cells to CDDP (up to 24.9 %) and its effect was the most widespread since 4 out of the 6 cell lines were sensitized.</p>
<p id="p0082" num="0082">The previously observed effects were validated at molecular level: a significant mRNA content decrease was confirmed by qRT-PCR for all siRNAs (Table VI).
<tables id="tabl0006" num="0006">
<table frame="all">
<title><b><u>Table VI</u>: Validation of siRNA -induced mRNA content down-regulation</b></title>
<tgroup cols="4">
<colspec colnum="1" colname="col1" colwidth="23mm"/>
<colspec colnum="2" colname="col2" colwidth="26mm"/>
<colspec colnum="3" colname="col3" colwidth="32mm"/>
<colspec colnum="4" colname="col4" colwidth="29mm"/>
<thead>
<row>
<entry valign="middle"><b>Cell line</b></entry>
<entry valign="middle"><b>mRNA</b></entry>
<entry align="center" valign="middle"><b>inhibition</b><br/>
<b>%</b></entry>
<entry align="center" valign="middle"><b>P</b><br/>
<b>ANOVA</b></entry></row></thead>
<tbody>
<row>
<entry morerows="3"><b>GHD</b></entry>
<entry><i>ERCC2</i></entry>
<entry align="center">61.6</entry>
<entry align="center">0.011</entry></row>
<row>
<entry><i>MUTYH</i></entry>
<entry align="center">71.0</entry>
<entry align="center">0.004</entry></row>
<row>
<entry><i>FNKP</i></entry>
<entry align="center">83.8</entry>
<entry align="center">0.005</entry></row>
<row>
<entry><i>ERCC1</i></entry>
<entry align="center">58.6</entry>
<entry align="center">0.019</entry></row>
<row>
<entry morerows="3"><b>U373</b></entry>
<entry><i>ERCC2</i></entry>
<entry align="center">95.7</entry>
<entry align="center">0.003</entry></row>
<row>
<entry><i>MUTYH</i></entry>
<entry align="center">72.9</entry>
<entry align="center">0.007</entry></row>
<row>
<entry><i>PNKP</i></entry>
<entry align="center">44.2</entry>
<entry align="center">0.013</entry></row>
<row>
<entry><i>ERCC1</i></entry>
<entry align="center">77.4</entry>
<entry align="center">0.018</entry></row></tbody></tgroup>
</table>
</tables></p>
<p id="p0083" num="0083">When a particular siRNA was transfected, the quantities in mRNA corresponding to all the other non targetted genes were unchanged, confirming the target specificity of the selected siRNA. There was no obvious link between the efficiency of siRNA to decrease mRNA amounts (nor with final mRNA content) and functional impact on cell viability (<figref idref="f0002">Figure 2</figref>). This is reinforced by the observation that<!-- EPO <DP n="22"> --> <i>ERCC1</i> mRNA amount actually decreased (by 65 %) in U87 cells which were yet not chemosensitized.</p>
<heading id="h0012">d) <u>Study for a link between DNA-repair genes expression and siRNA-induced chemotherapy</u></heading>
<p id="p0084" num="0084">Expression of the 4 DNA-repair genes was studied by qRT-PCR in the 6 cell lines, with (induced level) or without cisplatin (basal level) to analyse the hypothesis that differences in expression could account for differences in siRNA responses. For each individual mRNA, the relative gene expression levels were roughly similar in all cell lines in absence of drug (Table VII).
<tables id="tabl0007" num="0007">
<table frame="all">
<title><b><u>Table VII</u> : DNA repair gene expression</b></title>
<tgroup cols="6">
<colspec colnum="1" colname="col1" colwidth="17mm"/>
<colspec colnum="2" colname="col2" colwidth="12mm"/>
<colspec colnum="3" colname="col3" colwidth="12mm"/>
<colspec colnum="4" colname="col4" colwidth="12mm"/>
<colspec colnum="5" colname="col5" colwidth="12mm"/>
<colspec colnum="6" colname="col6" colwidth="11mm"/>
<thead>
<row>
<entry morerows="2"><b>Cell line</b></entry>
<entry namest="col2" nameend="col6" align="center"><b><i>ERCC1</i></b></entry></row>
<row>
<entry namest="col2" nameend="col3" align="left"><b>Basal</b></entry>
<entry namest="col4" nameend="col6" align="left"><b>Induced</b></entry></row>
<row>
<entry><b>Qty*</b></entry>
<entry><b>sem</b></entry>
<entry><b>Qty</b></entry>
<entry><b>sem</b></entry>
<entry><b>%**</b></entry></row></thead>
<tbody>
<row valign="bottom">
<entry><b>GHD</b></entry>
<entry>33</entry>
<entry>13</entry>
<entry>35</entry>
<entry>15</entry>
<entry>104</entry></row>
<row valign="bottom">
<entry><b>LN229</b></entry>
<entry>33</entry>
<entry>13</entry>
<entry>78</entry>
<entry>30</entry>
<entry>233</entry></row>
<row valign="bottom">
<entry><b>U138</b></entry>
<entry>40</entry>
<entry>17</entry>
<entry>97</entry>
<entry>36</entry>
<entry>242</entry></row>
<row valign="bottom">
<entry><b>U373</b></entry>
<entry>11</entry>
<entry>5 1</entry>
<entry>2</entry>
<entry>6</entry>
<entry>110</entry></row>
<row valign="bottom">
<entry><b>U87</b></entry>
<entry>25</entry>
<entry>10</entry>
<entry>25</entry>
<entry>10</entry>
<entry>39</entry></row>
<row valign="bottom">
<entry><b>CCF</b></entry>
<entry>8</entry>
<entry>4</entry>
<entry>12</entry>
<entry>6</entry>
<entry>148</entry></row></tbody></tgroup>
<tgroup cols="6">
<colspec colnum="1" colname="col1" colwidth="17mm"/>
<colspec colnum="2" colname="col2" colwidth="12mm"/>
<colspec colnum="3" colname="col3" colwidth="12mm"/>
<colspec colnum="4" colname="col4" colwidth="12mm"/>
<colspec colnum="5" colname="col5" colwidth="12mm"/>
<colspec colnum="6" colname="col6" colwidth="11mm"/>
<thead>
<row>
<entry morerows="2"><b>Cell line</b></entry>
<entry namest="col2" nameend="col6" align="center"><b><i>ERCC2</i></b></entry></row>
<row>
<entry namest="col2" nameend="col3" align="left"><b>Basal</b></entry>
<entry namest="col4" nameend="col6" align="left"><b>Induced</b></entry></row>
<row>
<entry><b>Qty*</b></entry>
<entry><b>sem</b></entry>
<entry><b>Qty</b></entry>
<entry><b>sem</b></entry>
<entry><b>%**</b></entry></row></thead>
<tbody>
<row valign="bottom">
<entry><b>GHD</b></entry>
<entry>10</entry>
<entry>3</entry>
<entry>17</entry>
<entry>5</entry>
<entry>163</entry></row>
<row valign="bottom">
<entry><b>LN229</b></entry>
<entry>4</entry>
<entry>1</entry>
<entry>11</entry>
<entry>1</entry>
<entry>268</entry></row>
<row valign="bottom">
<entry><b>U138</b></entry>
<entry>21</entry>
<entry>4</entry>
<entry>66</entry>
<entry>15</entry>
<entry>312</entry></row>
<row valign="bottom">
<entry><b>U373</b></entry>
<entry>14</entry>
<entry>1</entry>
<entry>17</entry>
<entry>4</entry>
<entry>122</entry></row>
<row valign="bottom">
<entry><b>U87</b></entry>
<entry>5</entry>
<entry>1</entry>
<entry>5</entry>
<entry>1</entry>
<entry>96</entry></row>
<row valign="bottom">
<entry><b>CCF</b></entry>
<entry>2</entry>
<entry>1</entry>
<entry>3</entry>
<entry>1</entry>
<entry>196</entry></row></tbody></tgroup>
<tgroup cols="6">
<colspec colnum="1" colname="col1" colwidth="17mm"/>
<colspec colnum="2" colname="col2" colwidth="12mm"/>
<colspec colnum="3" colname="col3" colwidth="12mm"/>
<colspec colnum="4" colname="col4" colwidth="12mm"/>
<colspec colnum="5" colname="col5" colwidth="12mm"/>
<colspec colnum="6" colname="col6" colwidth="11mm"/>
<thead>
<row>
<entry morerows="2"><b>Cell line</b></entry>
<entry namest="col2" nameend="col6" align="center"><b><i>MUTYH</i></b></entry></row>
<row>
<entry namest="col2" nameend="col3" align="left"><b>Basal</b></entry>
<entry namest="col4" nameend="col6" align="left"><b>Induced</b></entry></row>
<row>
<entry><b>Qty*</b></entry>
<entry><b>sem</b></entry>
<entry><b>Qty</b></entry>
<entry><b>sem</b></entry>
<entry><b>%**</b></entry></row></thead>
<tbody>
<row valign="bottom">
<entry><b>GHD</b></entry>
<entry>108</entry>
<entry>19</entry>
<entry>114</entry>
<entry>14</entry>
<entry>105</entry></row>
<row valign="bottom">
<entry><b>LN229</b></entry>
<entry>137</entry>
<entry>52</entry>
<entry>439</entry>
<entry>44</entry>
<entry>320</entry></row>
<row valign="bottom">
<entry><b>U138</b></entry>
<entry>185</entry>
<entry>43</entry>
<entry>469</entry>
<entry>157</entry>
<entry>254</entry></row>
<row valign="bottom">
<entry><b>U373</b></entry>
<entry>49</entry>
<entry>33</entry>
<entry>135</entry>
<entry>41</entry>
<entry>278</entry></row>
<row valign="bottom">
<entry><b>U87</b></entry>
<entry>91</entry>
<entry>28</entry>
<entry>191</entry>
<entry>37</entry>
<entry>110</entry></row>
<row valign="bottom">
<entry><b>CCF</b></entry>
<entry>45</entry>
<entry>20</entry>
<entry>117</entry>
<entry>40</entry>
<entry>257</entry></row></tbody></tgroup>
<tgroup cols="6">
<colspec colnum="1" colname="col1" colwidth="17mm"/>
<colspec colnum="2" colname="col2" colwidth="12mm"/>
<colspec colnum="3" colname="col3" colwidth="12mm"/>
<colspec colnum="4" colname="col4" colwidth="12mm"/>
<colspec colnum="5" colname="col5" colwidth="12mm"/>
<colspec colnum="6" colname="col6" colwidth="11mm"/>
<thead>
<row>
<entry morerows="2"><b>Cell line</b></entry>
<entry namest="col2" nameend="col6" align="center"><b><i>PNKP</i></b></entry></row>
<row>
<entry namest="col2" nameend="col3" align="left"><b>Basal</b></entry>
<entry namest="col4" nameend="col6" align="left"><b>Induced</b></entry></row>
<row>
<entry><b>Qty*</b></entry>
<entry><b>sem</b></entry>
<entry><b>Qty</b></entry>
<entry><b>sem</b></entry>
<entry><b>%**</b></entry></row></thead>
<tbody>
<row valign="bottom">
<entry><b>GHD</b></entry>
<entry>94</entry>
<entry>28</entry>
<entry>83</entry>
<entry>23</entry>
<entry>88</entry></row>
<row valign="bottom">
<entry><b>LN229</b></entry>
<entry>137</entry>
<entry>35</entry>
<entry>283</entry>
<entry>70</entry>
<entry>206</entry></row>
<row valign="bottom">
<entry><b>U138</b></entry>
<entry>550</entry>
<entry>116</entry>
<entry>1198</entry>
<entry>171</entry>
<entry>218</entry></row>
<row valign="bottom">
<entry><b>U373</b></entry>
<entry>115</entry>
<entry>31</entry>
<entry>149</entry>
<entry>4</entry>
<entry>130</entry></row>
<row valign="bottom">
<entry><b>U87</b></entry>
<entry>224</entry>
<entry>50</entry>
<entry>196</entry>
<entry>63</entry>
<entry>88</entry></row>
<row valign="bottom">
<entry><b>CCF</b></entry>
<entry>76</entry>
<entry>20</entry>
<entry>130</entry>
<entry>29</entry>
<entry>171</entry></row></tbody></tgroup>
<tgroup cols="6" rowsep="0">
<colspec colnum="1" colname="col1" colwidth="17mm"/>
<colspec colnum="2" colname="col2" colwidth="12mm"/>
<colspec colnum="3" colname="col3" colwidth="12mm"/>
<colspec colnum="4" colname="col4" colwidth="12mm"/>
<colspec colnum="5" colname="col5" colwidth="12mm"/>
<colspec colnum="6" colname="col6" colwidth="11mm"/>
<tbody>
<row>
<entry namest="col1" nameend="col6" align="justify">quantity in zeptomol (10<sup>21</sup>mol) in a 25 ng total RNA extract<br/>
** percentage of basal level</entry></row></tbody></tgroup>
</table>
</tables><!-- EPO <DP n="23"> --></p>
<p id="p0085" num="0085"><i>MUTYH</i> and <i>PNKP</i> mRNAs were the most abundant and <i>ERCC2</i> was generally the less one. Expression of the four genes was reinforced up to three times in response to chemotherapy, in at least two cell lines (Table VII). No gene was up-regulated in all cell lines, the four genes were up-regulated in two cell lines (LN229 and U138) and none in one other (U87). Thus, there was no common induction profile conserved among all cell lines. Finally, no correlation was found between chemosensitization by a siRNA (DS) and basal or CDDP-induced expression of corresponding gene or even global expression of the 4 genes. e) <u>Transposition of chemo-sensitization by siRNAs from CDDP to temozolomide.</u></p>
<p id="p0086" num="0086">Since temozolomide is becoming the chemotherapy gold standard for gliomas, the study was extended to this drug. <i>ERCC1</i> siRNAs were more efficient for sensitizing astrocytoma-derived cell lines to this second drug. However, down-regulating <i>MUTYH, PNKP</i> or <i>ERCC2</i> improved very significantly drug effects in U373 cells (<figref idref="f0002">figure 2</figref>).</p>
<heading id="h0013"><b><u>Example 2:</u> siRNA directed to 1p/19q genes involved in drug metabolism are able to sensitize cancer cells to chemotherapy</b></heading>
<heading id="h0014"><b>1) Material and Methods</b></heading>
<p id="p0087" num="0087">The experimental procedures are described in example 1.</p>
<heading id="h0015"><b>2) Results</b></heading>
<heading id="h0016">a) <u>Identification of genes potentially involved in chemoresistance of astrocytoma cells</u></heading>
<p id="p0088" num="0088">Genes potentially responsible for chemoresistance of astrocytoma, were screened from the chromosomic area considered as commonly correlated with oligodendroglioma chemosensitivity, as described in example 1. Nine genes involved in drug metabolism (detoxification, cellular efflux, apoptosis) were selected (Table VIII).<!-- EPO <DP n="24"> -->
<tables id="tabl0008" num="0008"><img id="ib0001" file="imgb0001.tif" wi="92" he="203" img-content="table" img-format="tif"/>
</tables><!-- EPO <DP n="25"> --></p>
<heading id="h0017">b) <u>Screening of DNA-repair genes involved in chemoresistance of astrocytoma cells</u></heading>
<p id="p0089" num="0089">The eight genes located in the 1p/19q (Table VIII) were screened with five different siRNAs by gene, on two different cell-lines, U373 and GHD. The siRNAs sequences are presented in Table IX. A siRNA specific for GFP was used as control.
<tables id="tabl0009" num="0009">
<table frame="all">
<title><b><u>Table IX:</u> SiRNAs sequences*</b></title>
<tgroup cols="4">
<colspec colnum="1" colname="col1" colwidth="22mm"/>
<colspec colnum="2" colname="col2" colwidth="41mm"/>
<colspec colnum="3" colname="col3" colwidth="18mm"/>
<colspec colnum="4" colname="col4" colwidth="23mm"/>
<thead>
<row>
<entry valign="top"><b>Gene</b></entry>
<entry valign="top"><b>siRNA sequence</b></entry>
<entry align="center" valign="top"><b>position</b></entry>
<entry align="center" valign="top"><b>SEQ ID NO:</b></entry></row></thead>
<tbody>
<row>
<entry><i>CYP2B6</i></entry>
<entry>ccaccauccuccagaacuu</entry>
<entry align="center">1359</entry>
<entry align="center">51</entry></row>
<row>
<entry/>
<entry>ggaaaucaaugcuuacauu</entry>
<entry align="center">724</entry>
<entry align="center">52</entry></row>
<row>
<entry/>
<entry>acaggugauuggcccacau</entry>
<entry align="center">994</entry>
<entry align="center">53</entry></row>
<row>
<entry/>
<entry>ugacccacacuacuuugaa</entry>
<entry align="center">1198</entry>
<entry align="center">54</entry></row>
<row>
<entry/>
<entry>acacgcucucgcucuucuu</entry>
<entry align="center">879</entry>
<entry align="center">55</entry></row>
<row>
<entry/>
<entry>ccagggagaggaguuuagu</entry>
<entry align="center">326</entry>
<entry align="center">91</entry></row>
<row>
<entry/>
<entry>gaagcauugaggagcgaau</entry>
<entry align="center">475</entry>
<entry align="center">92</entry></row>
<row>
<entry><i>CYP2F1</i></entry>
<entry>ccacacauaaccugcucuu</entry>
<entry align="center">928</entry>
<entry align="center">56</entry></row>
<row>
<entry/>
<entry>gcauaagcacagccaucuu</entry>
<entry align="center">64</entry>
<entry align="center">57</entry></row>
<row>
<entry/>
<entry>ucaaugacaacuuccaaau</entry>
<entry align="center">661</entry>
<entry align="center">58</entry></row>
<row>
<entry/>
<entry>acacggaguucuacuugaa</entry>
<entry align="center">857</entry>
<entry align="center">59</entry></row>
<row>
<entry/>
<entry>ccaccgucaugcagaacuu</entry>
<entry align="center">1370</entry>
<entry align="center">60</entry></row>
<row>
<entry><b><i>CYP2A6</i></b></entry>
<entry>ugaccacguugaaccucuu</entry>
<entry align="center">887</entry>
<entry align="center">61</entry></row>
<row>
<entry/>
<entry>ccaaguuucgggauuucuu</entry>
<entry align="center">1142</entry>
<entry align="center">62</entry></row>
<row>
<entry/>
<entry>gcaccagcaucguuguaga</entry>
<entry align="center">1020</entry>
<entry align="center">63</entry></row>
<row>
<entry/>
<entry><b>ggacaaagaguuccuguca</b></entry>
<entry align="center"><b>591</b></entry>
<entry align="center"><b>64</b></entry></row>
<row>
<entry/>
<entry>gcaagccugucaccuuugu</entry>
<entry align="center">1175</entry>
<entry align="center">65</entry></row>
<row>
<entry><b><i>CYP4B1</i></b></entry>
<entry>ugagccugacuaugccaaa</entry>
<entry align="center">297</entry>
<entry align="center">66</entry></row>
<row>
<entry/>
<entry>ugaugugcugaagcccuau</entry>
<entry align="center">453</entry>
<entry align="center">67</entry></row>
<row>
<entry/>
<entry>ggagucuacucgcuucuau</entry>
<entry align="center">253</entry>
<entry align="center">68</entry></row>
<row>
<entry/>
<entry>gcacgaucauucuucucau</entry>
<entry align="center">3228</entry>
<entry align="center">69</entry></row>
<row>
<entry/>
<entry>cuaccuugcagucagcgau</entry>
<entry align="center">645</entry>
<entry align="center">70</entry></row>
<row>
<entry><i>FRAP1</i></entry>
<entry>agaacucgcugauccaaau</entry>
<entry align="center">1230</entry>
<entry align="center">71</entry></row>
<row>
<entry/>
<entry>ccagcagcauaagcaggaa</entry>
<entry align="center">5287</entry>
<entry align="center">72</entry></row>
<row>
<entry/>
<entry>caagcgacaucccaugaaa</entry>
<entry align="center">7670</entry>
<entry align="center">73</entry></row>
<row>
<entry/>
<entry>gcaggcugcucuccauggu</entry>
<entry align="center">969</entry>
<entry align="center">74</entry></row>
<row>
<entry/>
<entry>ggcucaugcugggacccaa</entry>
<entry align="center">1010</entry>
<entry align="center">75</entry></row><!-- EPO <DP n="26"> -->
<row>
<entry><i>MGC13170</i></entry>
<entry>ggagcuguccauacgccac</entry>
<entry align="center">1159</entry>
<entry align="center">76</entry></row>
<row>
<entry/>
<entry>ggagaagguggauaagugg</entry>
<entry align="center">1068</entry>
<entry align="center">77</entry></row>
<row>
<entry/>
<entry>ccaggcucaugcugggacc</entry>
<entry align="center">1007</entry>
<entry align="center">78</entry></row>
<row>
<entry/>
<entry>gugcagccucagaagaaga</entry>
<entry align="center">674</entry>
<entry align="center">103</entry></row>
<row>
<entry/>
<entry>gaagaagaaauucucuuuc</entry>
<entry align="center">453</entry>
<entry align="center">104</entry></row>
<row>
<entry><i>MLP</i></entry>
<entry>cgagggcacugcucaggaa</entry>
<entry align="center">597</entry>
<entry align="center">79</entry></row>
<row>
<entry/>
<entry>gaagaaauucucuuucaag</entry>
<entry align="center">456</entry>
<entry align="center">80</entry></row>
<row>
<entry/>
<entry>aaagcaauggagacuuauc</entry>
<entry align="center">293</entry>
<entry align="center">81</entry></row>
<row>
<entry/>
<entry>cgacuucguucuaauauau</entry>
<entry align="center">1089</entry>
<entry align="center">82</entry></row>
<row>
<entry/>
<entry>ucaacuuccuucagaauuu</entry>
<entry align="center">1694</entry>
<entry align="center">83</entry></row>
<row>
<entry><i>MSH4</i></entry>
<entry>guagacgacuucguucuaa</entry>
<entry align="center">1084</entry>
<entry align="center">84</entry></row>
<row>
<entry/>
<entry>agagcuuacuaugguuccu</entry>
<entry align="center">1380</entry>
<entry align="center">85</entry></row>
<row>
<entry/>
<entry>agaagguauuggcauuugu</entry>
<entry align="center">2345</entry>
<entry align="center">86</entry></row>
<row>
<entry/>
<entry>gcugacuccugaggaagaa</entry>
<entry align="center">407</entry>
<entry align="center">87</entry></row>
<row>
<entry/>
<entry>ccaagacccuggaagaa</entry>
<entry align="center">301</entry>
<entry align="center">105</entry></row>
<row>
<entry><i>RPS8</i></entry>
<entry>ccacaagaagcggaaguau</entry>
<entry align="center">86</entry>
<entry align="center">88</entry></row>
<row>
<entry/>
<entry>agaguuggaguucaaucuu</entry>
<entry align="center">602</entry>
<entry align="center">89</entry></row>
<row>
<entry/>
<entry>agagaaagcccuaccacaa</entry>
<entry align="center">73</entry>
<entry align="center">90</entry></row></tbody></tgroup>
<tgroup cols="4" rowsep="0">
<colspec colnum="1" colname="col1" colwidth="22mm"/>
<colspec colnum="2" colname="col2" colwidth="41mm"/>
<colspec colnum="3" colname="col3" colwidth="18mm"/>
<colspec colnum="4" colname="col4" colwidth="23mm"/>
<tbody>
<row>
<entry namest="col1" nameend="col4" align="justify">*siRNA sequences are defined by the sequence of the sense strand.<br/>
The antisense strand is perfectly complementary to the sense strand.<br/>
SiRNAs responsible for a significant sensitization effect are highlighted in bold.</entry></row></tbody></tgroup>
</table>
</tables></p>
<p id="p0090" num="0090">To select siRNAs specifically including a chemosensitive effect, those inducing a basal toxic effect were eliminated (more than 35 % cell death after transfection). A positive chemosensitive effect was considered for siRNAs inducing a cytotoxic effect compared to siRNA GFP/CDDP condition. 2 siRNAs out of 45, matched with these criteria, corresponding to 2 genes: <i>CYP2A6</i> and <i>CYP4B1</i> (Table IX).</p>
<p id="p0091" num="0091">The most efficient siRNA for each of these genes was transfected in 6 different glioma derived cell lines treated with CDDP or temozolomide (TMZ). CIs for each siRNA were compared with control CI (siRNA GFP). The results confirmed that two siRNAs (SEQ ID NO: 64 and 70) targeting <i>CYP2A6</i> and <i>CYP4B1,</i> respectively, had a significant chemosensitization effect on astrocytoma cells (<figref idref="f0003">figure 3</figref>).<!-- EPO <DP n="27"> --></p>
<heading id="h0018">SEQUENCE LISTING</heading>
<p id="p0092" num="0092">
<ul id="ul0003" list-style="none">
<li>&lt;110&gt; INSTITUT NATIONAL DE LA SANTE ET DE LA RECHERCHE MEDICALE<br/>
BERGER, François<br/>
PELLETIER, Laurent<br/>
ISSARTEL, Jean-Paul<br/>
BOCCARD, Sandra</li>
<li>&lt;120&gt; SENSIZITATION OF CANCER CELLS TO THERAPY USING SiNA TARGETING GENES FROM THE 1p and 19q CHROMOSOMAL REGIONS</li>
<li>&lt;130&gt; F598PCT91</li>
<li>&lt;160&gt; 105</li>
<li>&lt;170&gt; PatentIn version 3.3</li>
<li>&lt;210&gt; 1<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Forward primer cyclophyline A</li>
<li>&lt;400&gt; 1<br/>
ttcatctgca ctgccaagac       20</li>
<li>&lt;210&gt; 2<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Reverse primer cyclophyline A</li>
<li>&lt;400&gt; 2<br/>
tcgagttgtc acagtcagc       19</li>
<li>&lt;210&gt; 3<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Forward primer ERCC1</li>
<li>&lt;400&gt; 3<br/>
ggcgacgtaa ttcccgacta       20</li>
<li>&lt;210&gt; 4<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Reverse primer ERCC1</li>
<li>&lt;400&gt; 4<br/>
agttcttccc caggctctgc       20</li>
<li>&lt;210&gt; 5<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
<!-- EPO <DP n="28"> -->&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Forward primer ERCC2</li>
<li>&lt;400&gt; 5<br/>
cggaactatg ggaacctcct       20</li>
<li>&lt;210&gt; 6<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Reverse primer ERCC2</li>
<li>&lt;400&gt; 6<br/>
tacttctcca gggcgacact       20</li>
<li>&lt;210&gt; 7<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Forward primer MUTYH</li>
<li>&lt;400&gt; 7<br/>
gtcctgacgt ggaggagtgt       20</li>
<li>&lt;210&gt; 8<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Reverse primer MUTYH</li>
<li>&lt;400&gt; 8<br/>
cctctgcacc agcagaattt       20</li>
<li>&lt;210&gt; 9<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Forward primer PNKP</li>
<li>&lt;400&gt; 9<br/>
tcgagagatg acggactcct       20</li>
<li>&lt;210&gt; 10<br/>
&lt;211&gt; 20<br/>
&lt;212&gt; DNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; Reverse primer PNKP</li>
<li>&lt;400&gt; 10<br/>
tttattgtgg aggggagctg       20<!-- EPO <DP n="29"> --></li>
<li>&lt;210&gt; 11<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence ERCC2</li>
<li>&lt;400&gt; 11<br/>
ggacgucgau gggaaaugc       19</li>
<li>&lt;210&gt; 12<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence ERCC2</li>
<li>&lt;400&gt; 12<br/>
agacggugcu caggaucaa       19</li>
<li>&lt;210&gt; 13<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence ERCC2</li>
<li>&lt;400&gt; 13<br/>
ucaucaucga gcccuuuga       19</li>
<li>&lt;210&gt; 14<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence ERCC2</li>
<li>&lt;400&gt; 14<br/>
ggaacaagcu gcucuuuau       19</li>
<li>&lt;210&gt; 15<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence ERCC2</li>
<li>&lt;400&gt; 15<br/>
ugacuuucuu accuucgau       19</li>
<li>&lt;210&gt; 16<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence LIG1<!-- EPO <DP n="30"> --></li>
<li>&lt;400&gt; 16<br/>
agacgcucag cagcuucuu       19</li>
<li>&lt;210&gt; 17<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence LIG1</li>
<li>&lt;400&gt; 17<br/>
gaagauagac aucaucaaa       19</li>
<li>&lt;210&gt; 18<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence LIG1</li>
<li>&lt;400&gt; 18<br/>
agacagcaga gcccagaaa       19</li>
<li>&lt;210&gt; 19<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence LIG1</li>
<li>&lt;400&gt; 19<br/>
gcagacguuc ugcgagguu       19</li>
<li>&lt;210&gt; 20<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence LIG1</li>
<li>&lt;400&gt; 20<br/>
gcagauccag ccauuccaa       19</li>
<li>&lt;210&gt; 21<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; SiRNA sequence MAD2L2</li>
<li>&lt;400&gt; 21<br/>
gaagaaugau guggagaaa       19</li>
<li>&lt;210&gt; 22<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
<!-- EPO <DP n="31"> -->&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MAD2L2</li>
<li>&lt;400&gt; 22<br/>
gacucgcugu ugucucaug       19</li>
<li>&lt;210&gt; 23<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MAD2L2</li>
<li>&lt;400&gt; 23<br/>
cucgcaacau gcagaagau       19</li>
<li>&lt;210&gt; 24<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; SiRNA sequence MAD2L2</li>
<li>&lt;400&gt; 24<br/>
gaagauccag gucaucaag       19</li>
<li>&lt;210&gt; 25<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MAD2L2</li>
<li>&lt;400&gt; 25<br/>
ugagcaggau guccacaug       19</li>
<li>&lt;210&gt; 26<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MUTYH</li>
<li>&lt;400&gt; 26<br/>
gaagcaugcu aagaacaac       19</li>
<li>&lt;210&gt; 27<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MUTYH</li>
<li>&lt;400&gt; 27<br/>
ugggaugauu gcugagugu       19<!-- EPO <DP n="32"> --></li>
<li>&lt;210&gt; 28<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MUTYH</li>
<li>&lt;400&gt; 28<br/>
gcacccuugu uucccagca       19</li>
<li>&lt;210&gt; 29<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MUTYH</li>
<li>&lt;400&gt; 29<br/>
gguuguccac accuucucu       19</li>
<li>&lt;210&gt; 30<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MUTYH</li>
<li>&lt;400&gt; 30<br/>
gcugacauau caaguauau       19</li>
<li>&lt;210&gt; 31<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence PNKP</li>
<li>&lt;400&gt; 31<br/>
cacacuguau uuggucaau       19</li>
<li>&lt;210&gt; 32<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence PNKP</li>
<li>&lt;400&gt; 32<br/>
agagacccgc acaccagaa       19</li>
<li>&lt;210&gt; 33<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence PNKP<!-- EPO <DP n="33"> --></li>
<li>&lt;400&gt; 33<br/>
gaaucuugua cccagagau       19</li>
<li>&lt;210&gt; 34<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence PNKP</li>
<li>&lt;400&gt; 34<br/>
aguccaccuu ucucaagaa       19</li>
<li>&lt;210&gt; 35<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence PNKP</li>
<li>&lt;400&gt; 35<br/>
caaccgguuu cgagagaug       19</li>
<li>&lt;210&gt; 36<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence POLD1</li>
<li>&lt;400&gt; 36<br/>
ggagauggag gcagaacac       19</li>
<li>&lt;210&gt; 37<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence POLD1</li>
<li>&lt;400&gt; 37<br/>
guuggagauu gaccauuau       19</li>
<li>&lt;210&gt; 38<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence POLD1</li>
<li>&lt;400&gt; 38<br/>
ucaccgguua caacaucca       19</li>
<li>&lt;210&gt; 39<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
<!-- EPO <DP n="34"> -->&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence POLD1</li>
<li>&lt;400&gt; 39<br/>
cuuagacucc accagcugc    19</li>
<li>&lt;210&gt; 40<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence POLD1</li>
<li>&lt;400&gt; 40<br/>
auucagaugg gauaccucc    19</li>
<li>&lt;210&gt; 41<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RAD54L</li>
<li>&lt;400&gt; 41<br/>
ccagcauugu gaauagaug       19</li>
<li>&lt;210&gt; 42<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RAD54L</li>
<li>&lt;400&gt; 42<br/>
ucaccucgcu aaagaagcu    19</li>
<li>&lt;210&gt; 43<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RAD54L</li>
<li>&lt;400&gt; 43<br/>
ggagcuguuu auccuggau       19</li>
<li>&lt;210&gt; 44<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RAD54L</li>
<li>&lt;400&gt; 44<br/>
ugaucugcuu gaguauuuc       19<!-- EPO <DP n="35"> --></li>
<li>&lt;210&gt; 45<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RAD54L</li>
<li>&lt;400&gt; 45<br/>
gcagugagac ccagaucca       19</li>
<li>&lt;210&gt; 46<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RUVBL2</li>
<li>&lt;400&gt; 46<br/>
aucuucuccc uggagauga       19</li>
<li>&lt;210&gt; 47<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RUVBL2</li>
<li>&lt;400&gt; 47<br/>
acugacccuc aagaccaca       19</li>
<li>&lt;210&gt; 48<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RUVBL2</li>
<li>&lt;400&gt; 48<br/>
acgcaagggu acagaagug       19</li>
<li>&lt;210&gt; 49<br/>
&lt;211&gt; 21<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence GFP</li>
<li>&lt;400&gt; 49<br/>
gacguaaacg gccacaaguu c       21</li>
<li>&lt;210&gt; 50<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence ERCC1<!-- EPO <DP n="36"> --></li>
<li>&lt;400&gt; 50<br/>
ggagcuggcu aagaugugu       19</li>
<li>&lt;210&gt; 51<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2B6</li>
<li>&lt;400&gt; 51<br/>
ccaccauccu ccagaacuu       19</li>
<li>&lt;210&gt; 52<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2B6</li>
<li>&lt;400&gt; 52<br/>
ggaaaucaau gcuuacauu       19</li>
<li>&lt;210&gt; 53<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2B6</li>
<li>&lt;400&gt; 53<br/>
acaggugauu ggcccacau       19</li>
<li>&lt;210&gt; 54<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2B6</li>
<li>&lt;400&gt; 54<br/>
ugacccacac uacuuugaa       19</li>
<li>&lt;210&gt; 55<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2B6</li>
<li>&lt;400&gt; 55<br/>
acacgcucuc gcucuucuu       19</li>
<li>&lt;210&gt; 56<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
<!-- EPO <DP n="37"> -->&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2F1</li>
<li>&lt;400&gt; 56<br/>
ccacacauaa ccugcucuu       19</li>
<li>&lt;210&gt; 57<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2F1</li>
<li>&lt;400&gt; 57<br/>
gcauaagcac agccaucuu    19</li>
<li>&lt;210&gt; 58<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2F1</li>
<li>&lt;400&gt; 58<br/>
ucaaugacaa cuuccaaau       19</li>
<li>&lt;210&gt; 59<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2F1</li>
<li>&lt;400&gt; 59<br/>
acacggaguu cuacuugaa       19</li>
<li>&lt;210&gt; 60<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2F1</li>
<li>&lt;400&gt; 60<br/>
ccaccgucau gcagaacuu       19</li>
<li>&lt;210&gt; 61<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2A6</li>
<li>&lt;400&gt; 61<br/>
ugaccacguu gaaccucuu       19<!-- EPO <DP n="38"> --></li>
<li>&lt;210&gt; 62<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2A6</li>
<li>&lt;400&gt; 62<br/>
ccaaguuucg ggauuucuu       19</li>
<li>&lt;210&gt; 63<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2A6</li>
<li>&lt;400&gt; 63<br/>
gcaccagcau cguuguaga       19</li>
<li>&lt;210&gt; 64<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2A6</li>
<li>&lt;400&gt; 64<br/>
ggacaaagag uuccuguca       19</li>
<li>&lt;210&gt; 65<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2A6</li>
<li>&lt;400&gt; 65<br/>
gcaagccugu caccuuugu       19</li>
<li>&lt;210&gt; 66<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP4B1</li>
<li>&lt;400&gt; 66<br/>
ugagccugac uaugccaaa       19</li>
<li>&lt;210&gt; 67<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP4B1<!-- EPO <DP n="39"> --></li>
<li>&lt;400&gt; 67<br/>
ugaugugcug aagcccuau       19</li>
<li>&lt;210&gt; 68<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP4B1</li>
<li>&lt;400&gt; 68<br/>
ggagucuacu cgcuucuau       19</li>
<li>&lt;210&gt; 69<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP4B1</li>
<li>&lt;400&gt; 69<br/>
gcacgaucau ucuucucau       19</li>
<li>&lt;210&gt; 70<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP4B1</li>
<li>&lt;400&gt; 70<br/>
cuaccuugca gucagcgau       19</li>
<li>&lt;210&gt; 71<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence FRAP1</li>
<li>&lt;400&gt; 71<br/>
agaacucgcu gauccaaau       19</li>
<li>&lt;210&gt; 72<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence FRAP1</li>
<li>&lt;400&gt; 72<br/>
ccagcagcau aagcaggaa       19</li>
<li>&lt;210&gt; 73<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
<!-- EPO <DP n="40"> -->&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence FRAP1</li>
<li>&lt;400&gt; 73<br/>
caagcgacau cccaugaaa       19</li>
<li>&lt;210&gt; 74<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence FRAP1</li>
<li>&lt;400&gt; 74<br/>
gcaggcugcu cuccauggu       19</li>
<li>&lt;210&gt; 75<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence FRAP1</li>
<li>&lt;400&gt; 75<br/>
ggcucaugcu gggacccaa       19</li>
<li>&lt;210&gt; 76<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MGC13170</li>
<li>&lt;400&gt; 76<br/>
ggagcugucc auacgccac       19</li>
<li>&lt;210&gt; 77<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MGC13170</li>
<li>&lt;400&gt; 77<br/>
ggagaaggug gauaagugg       19</li>
<li>&lt;210&gt; 78<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MGC13170</li>
<li>&lt;400&gt; 78<br/>
ccaggcucau gcugggacc       19<!-- EPO <DP n="41"> --></li>
<li>&lt;210&gt; 79<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MLP</li>
<li>&lt;400&gt; 79<br/>
cgagggcacu gcucaggaa       19</li>
<li>&lt;210&gt; 80<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MLP</li>
<li>&lt;400&gt; 80<br/>
gaagaaauuc ucuuucaag       19</li>
<li>&lt;210&gt; 81<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MLP</li>
<li>&lt;400&gt; 81<br/>
aaagcaaugg agacuuauc       19</li>
<li>&lt;210&gt; 82<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MLP</li>
<li>&lt;400&gt; 82<br/>
cgacuucguu cuaauauau       19</li>
<li>&lt;210&gt; 83<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MLP</li>
<li>&lt;400&gt; 83<br/>
ucaacuuccu ucagaauuu       19</li>
<li>&lt;210&gt; 84<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MSH4<!-- EPO <DP n="42"> --></li>
<li>&lt;400&gt; 84<br/>
guagacgacu ucguucuaa       19</li>
<li>&lt;210&gt; 85<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MSH4</li>
<li>&lt;400&gt; 85<br/>
agagcuuacu augguuccu       19</li>
<li>&lt;210&gt; 86<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MSH4</li>
<li>&lt;400&gt; 86<br/>
agaagguauu ggcauuugu       19</li>
<li>&lt;210&gt; 87<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MSH4</li>
<li>&lt;400&gt; 87<br/>
gcugacuccu gaggaagaa       19</li>
<li>&lt;210&gt; 88<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RPS8</li>
<li>&lt;400&gt; 88<br/>
ccacaagaag cggaaguau       19</li>
<li>&lt;210&gt; 89<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RPS8</li>
<li>&lt;400&gt; 89<br/>
agaguuggag uucuaucuu       19</li>
<li>&lt;210&gt; 90<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
<!-- EPO <DP n="43"> -->&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence RPS8</li>
<li>&lt;400&gt; 90<br/>
agagaaagcc cuaccacaa       19</li>
<li>&lt;210&gt; 91<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2B6</li>
<li>&lt;400&gt; 91<br/>
ccagggagag gaguuuagu       19</li>
<li>&lt;210&gt; 92<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence CYP2B6</li>
<li>&lt;400&gt; 92<br/>
gaagcauuga ggagcgaau       19</li>
<li>&lt;210&gt; 93<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence ERCC2</li>
<li>&lt;400&gt; 93<br/>
gcauuuccca ucgacgucc       19</li>
<li>&lt;210&gt; 94<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence ERCC2</li>
<li>&lt;400&gt; 94<br/>
ucaaagggcu cgaugauga       19</li>
<li>&lt;210&gt; 95<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence ERCC2</li>
<li>&lt;400&gt; 95<br/>
auaaagagca gcuuguucc       19<!-- EPO <DP n="44"> --></li>
<li>&lt;210&gt; 96<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence ERCC2</li>
<li>&lt;400&gt; 96<br/>
aucgaaggua agaaaguca       19</li>
<li>&lt;210&gt; 97<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence MUTYH</li>
<li>&lt;400&gt; 97<br/>
auauacuuga uaugucagc       19</li>
<li>&lt;210&gt; 98<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence PNPK</li>
<li>&lt;400&gt; 98<br/>
auugaccaaa uacagugug       19</li>
<li>&lt;210&gt; 99<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence POLD1</li>
<li>&lt;400&gt; 99<br/>
uggauguugu aaccgguga       19</li>
<li>&lt;210&gt; 100<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence RUVBL2</li>
<li>&lt;400&gt; 100<br/>
ucaucuccag ggagaagau       19</li>
<li>&lt;210&gt; 101<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence CYP2A6<!-- EPO <DP n="45"> --></li>
<li>&lt;400&gt; 101<br/>
ugacaggaac ucuuugucc       19</li>
<li>&lt;210&gt; 102<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siNA sequence CYP4B1</li>
<li>&lt;400&gt; 102<br/>
aucgcugacu gcaagguag       19</li>
<li>&lt;210&gt; 103<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MGC13170</li>
<li>&lt;400&gt; 103<br/>
gugcagccuc agaagaaga       19</li>
<li>&lt;210&gt; 104<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MGC13170</li>
<li>&lt;400&gt; 104<br/>
gaagaagaaa uucucuuuc       19</li>
<li>&lt;210&gt; 105<br/>
&lt;211&gt; 19<br/>
&lt;212&gt; RNA<br/>
&lt;213&gt; Artificial</li>
<li>&lt;220&gt;<br/>
&lt;223&gt; siRNA sequence MSH4</li>
<li>&lt;400&gt; 105<br/>
ccaagacccu ggugaagaa       19</li>
</ul></p>
</description><!-- EPO <DP n="46"> -->
<claims id="claims01" lang="en">
<claim id="c-en-01-0001" num="0001">
<claim-text>A double-stranded short interfering nucleic acid molecule comprising a sense and an antisense region, wherein the sense region comprises a nucleotide sequence that is selected from the group consisting of: the sequences SEQ ID NO: 64 and 70, and the sequences having at least 70% identity, preferably at least 80 % identity, more preferably at least 90 % identity with said sequences, and the antisense region comprises a nucleotide sequence that is complementary to the sense region.</claim-text></claim>
<claim id="c-en-01-0002" num="0002">
<claim-text>The double-stranded short interfering nucleic acid molecule according to claim 1, wherein each strand comprises 15 to about 30 nucleotides, and each strand comprises at least 15 to about 30 nucleotides that are complementary to the nucleotides of the other strand, preferably said double-stranded short interfering nucleic acid molecule comprises a 19 to 21 -nucleotide duplex.</claim-text></claim>
<claim id="c-en-01-0003" num="0003">
<claim-text>The double-stranded short interfering nucleic acid molecule according to claim 1 or 2 ,wherein the sense region comprises a nucleotide sequence having any of SEQ ID NO: 64 and 70, and the antisense region comprises a nucleotide sequence having any of SEQ ID NO: 101 and 102 ,respectively, preferably said double-stranded short interfering nucleic acid molecule comprises
<claim-text>- 1 to about 3 overhanging nucleotides at the 3' end of each strand, or</claim-text>
<claim-text>- blunt end(s).</claim-text></claim-text></claim>
<claim id="c-en-01-0004" num="0004">
<claim-text>The double-stranded short interfering nucleic acid molecule according to anyone of claims 1 to 3, which is assembled from two separate oligonucleotide fragments, wherein one fragment comprises the sense region and the second fragment comprises the antisense region of the short interfering nucleic acid molecule, preferably the sense region is connected to the antisense region via a linker molecule, more preferably, in particular said double-stranded short interfering nucleic acid molecule comprises ribonucleotides or comprises one or more modified pyrimidine and/or purine nucleotides<!-- EPO <DP n="47"> --></claim-text></claim>
<claim id="c-en-01-0005" num="0005">
<claim-text>The double-stranded short interfering nucleic acid molecule according to anyone of claims 1 to 4, wherein the strand comprising the sense region includes a terminal cap moiety at the 5'and/or 3' -end(s).</claim-text></claim>
<claim id="c-en-01-0006" num="0006">
<claim-text>The double-stranded short interfering nucleic acid molecule according to anyone of claims 1 to 5, wherein the strand comprising said antisense region includes a phosphate group at the 5 '-end.</claim-text></claim>
<claim id="c-en-01-0007" num="0007">
<claim-text>The double-stranded short interfering nucleic acid molecule according to anyone of claims 1 to 5, which comprises at least one modified internucleotidic linkage.</claim-text></claim>
<claim id="c-en-01-0008" num="0008">
<claim-text>A transcription unit comprising: a transcription initiation region, a transcription termination region, and a nucleic acid sequence encoding at least one short interfering nucleic acid molecule according to anyone of claims 1 to 4 and 6, wherein said nucleic acid sequence is operably linked to said initiation region in a manner that allows expression and/or delivery of the short interfering nucleic acid molecule.</claim-text></claim>
<claim id="c-en-01-0009" num="0009">
<claim-text>An expression vector comprising a transcription unit according to claim 8.</claim-text></claim>
<claim id="c-en-01-0010" num="0010">
<claim-text>A cell which is modified by a vector according to claim 9.</claim-text></claim>
<claim id="c-en-01-0011" num="0011">
<claim-text>A pharmaceutical composition comprising at least a short interfering nucleic acid molecule according to anyone of claims 1 to 7 or an expression vector according to claim 9 in an acceptable carrier, particularly in association with at least one anticancer drug</claim-text></claim>
<claim id="c-en-01-0012" num="0012">
<claim-text>The composition according to claim 11, which comprises a combination of at least two different short interfering nucleic acid molecules, particularly in association with at least one anticancer drug.<!-- EPO <DP n="48"> --></claim-text></claim>
<claim id="c-en-01-0013" num="0013">
<claim-text>Use of the short interfering nucleic acid molecule according to anyone of claims 1 to 7 or the vector according to claim 9, for the manufacture of a medicament for treating cancer.</claim-text></claim>
<claim id="c-en-01-0014" num="0014">
<claim-text>A product containing at least a short interfering nucleic acid molecule according to anyone of claims 1 to 7 or a vector according to claim 9, and an anticancer drug, as a combined preparation for simultaneous, separate or sequential use in anticancer therapy.</claim-text></claim>
<claim id="c-en-01-0015" num="0015">
<claim-text>The product according to claim 14, wherein said siNA molecule or vector is for use in anticancer therapy prior to the anticancer drug.</claim-text></claim>
</claims><!-- EPO <DP n="49"> -->
<claims id="claims02" lang="de">
<claim id="c-de-01-0001" num="0001">
<claim-text>Kleines doppelsträngiges interferierendes Nukleinsäuremolekül, welches eine Sense- und eine Antisense-Region umfasst, wobei die Sense-Region eine Nukleotidsequenz umfasst, die aus der Gruppe bestehend aus den Sequenzen SEQ ID NR. 64 und 70 ausgewählt ist, und wobei die Sequenzen mindestens 70 % Identität, vorzugsweise mindestens 80 % Identität, bevorzugter mindestens 90 % Identität mit diesen Sequenzen aufweisen, und die Antisense-Region umfasst eine Nukleotidsequenz, die komplementär zu der Sense-Region ist.</claim-text></claim>
<claim id="c-de-01-0002" num="0002">
<claim-text>Kleines doppelsträngiges interferierendes Nukleinsäuremolekül nach Anspruch 1, wobei jeder Strang 15 bis etwa 30 Nukleotide umfasst, und jeder Strang umfasst mindestens 15 bis etwa 30 Nukleotide, die komplementär zu den Nukleotiden des anderen Stranges sind, vorzugsweise welches kleines doppelsträngiges interferierendes Nukleinsäuremolekül einen 19- bis 21-Nukleotidduplex umfasst.</claim-text></claim>
<claim id="c-de-01-0003" num="0003">
<claim-text>Kleines doppelsträngiges interferierendes Nukleinsäuremolekül nach einem der Ansprüche 1 bis-3, wobei die Sense-Region eine Nukleotidsequenz umfasst, die eine der SEQ ID NR. 64 und 70 aufweist, und wobei die Antisense-Region eine Nukleotidsequenz umfasst, die eine der SEQ ID NR. 101 und 102 aufweist, wobei das kleine doppelsträngige interferierende Nukleinsäuremolekül vorzugsweise umfasst:
<claim-text>• 1 bis etwa 3 überhängende Nukleotide am 3'-Ende jedes Strangs, oder</claim-text>
<claim-text>• ein glattes Ende (glatte Enden).</claim-text></claim-text></claim>
<claim id="c-de-01-0004" num="0004">
<claim-text>Kleines doppelsträngiges interferierendes Nukleinsäuremolekül nach einem der Ansprüche 1 bis-3, das aus zwei Oligonukleotidfragmenten zusammegefügt wird, wobei ein Fragment die Sense-Region umfasst und das die zweite Fragment die Antisense-Region das kleinen Nukleinsäuremoleküls umfasst, wobei die Sense-Region mit der Antisense-Region bevorzugt durch ein Bindungsmolekül verknüpft ist, wobei, stärker bevorzugt, das kleine doppelsträngige interferierende Nukleinsäuremolekül insbesondere Ribonukleotide, ein oder mehrere modifizierte Pyrimidin- und/oder Purinnukleotide umfasst.</claim-text></claim>
<claim id="c-de-01-0005" num="0005">
<claim-text>Kleines doppelsträngiges interferierendes Nukleinsäuremolekül nach einem der Ansprüche 1 bis 4, wobei der Strang, welcher die Sense-Region umfasst,<!-- EPO <DP n="50"> --> eine Endkappengruppe am/an den 5'- und/oder 3'-Ende(n) beinhaltet.</claim-text></claim>
<claim id="c-de-01-0006" num="0006">
<claim-text>Kleines doppelsträngiges interferierendes Nukleinsäuremolekül nach einem der Ansprüche 1 bis 5, wobei der Strang, welcher die Antisense-Region umfasst, eine Phosphatgruppe am 5'-Ende beinhaltet.</claim-text></claim>
<claim id="c-de-01-0007" num="0007">
<claim-text>Kleines doppelsträngiges interferierendes Nukleinsäuremolekül nach einem der Ansprüche 1 bis 6, welches mindestens eine modifizierte internukleotidische Bindung umfasst.</claim-text></claim>
<claim id="c-de-01-0008" num="0008">
<claim-text>Transkriptionseinheit, welche Folgendes umfasst: eine Transkriptionsinitiierungsregion, eine Transkriptionsterminationsregion und eine Nukleinsäuresequenz, welche mindestens ein kleines interferierendes Nukleinsäuremolekül nach einem der Ansprüche 1 bis 4 und 6 codiert, wobei die Nukleinsäuresequenz wirkungsmäßig in einer Art und Weise mit der Initiierungsregion verbunden ist, welche die Expression und/oder Bereitstellung eines kleinen interferierenden Nukleinsäuremolekül gestattet.</claim-text></claim>
<claim id="c-de-01-0009" num="0009">
<claim-text>Expressionsvektor, welcher eine Transkriptionseinheit nach Anspruch 8 umfasst.</claim-text></claim>
<claim id="c-de-01-0010" num="0010">
<claim-text>Zelle, die durch einen Vektor nach Anspruch 9 modifiziert ist.</claim-text></claim>
<claim id="c-de-01-0011" num="0011">
<claim-text>Pharmazeutische Zusammensetzung, welche mindestens ein kleines interferierendes nach einem der Ansprüche 1 bis 7 oder einen Expressionsvektor nach Anspruch 9 in einer akzeptablen Trägersubstanz umfasst, die besonders mit mindestens einem Antikrebsmedikament in Zusammenhang stehen.<!-- EPO <DP n="51"> --></claim-text></claim>
<claim id="c-de-01-0012" num="0012">
<claim-text>Zusammensetzung nach Anspruch 11, welche eine Kombination aus mindestens zwei unterschiedlichen kleinen interferierenden Nukleinsäuremolekülen umfasst, die besonders mit mindestens einem Antikrebsmedikament in Zusammenhang stehen.</claim-text></claim>
<claim id="c-de-01-0013" num="0013">
<claim-text>Verwendung des kleinen interferierenden Nukleinsäuremoleküls nach einem der Ansprüche 1 bis 7 oder des Vektors nach Anspruch 9 für die Herstellung eines Medikamentes zur Behandlung von Krebs.</claim-text></claim>
<claim id="c-de-01-0014" num="0014">
<claim-text>Produkt, welches mindestens ein kleines interferierendes Nukleinsäuremolekül nach einem der Ansprüche 1 bis 7 oder einen Vektor nach Anspruch 9 enthält, und ein Antikrebsmedikament, als ein kombiniertes Präparat für die gleichzeitige, separate oder sequentielle Verwendung bei der Antikrebstherapie.</claim-text></claim>
<claim id="c-de-01-0015" num="0015">
<claim-text>Produkt nach Anspruch 14, wobei das siNA-Molekül oder der Vektor vor dem Antikrebsmedikament bei der Antikrebstherapie zum Einsatz kommt.</claim-text></claim>
</claims><!-- EPO <DP n="52"> -->
<claims id="claims03" lang="fr">
<claim id="c-fr-01-0001" num="0001">
<claim-text>Petite molécule d'acide nucléique interférant double brin comprenant une région sens et une région anti-sens, où la région sens comprend une séquence de nucléotides qui est choisie dans le groupe consistant en: les séquences SEQ ID NO: 64 et 70, et les séquences ayant au moins 70% d'identité, préférentiellement au moins 80% d'identité, plus préférentiellement au moins 90% d'identité avec lesdites séquences, et la région anti-sens comprend une séquence de nucléotides qui est complémentaire de la région sens.</claim-text></claim>
<claim id="c-fr-01-0002" num="0002">
<claim-text>Petite molécule d'acide nucléique interférant double brin selon la revendication 1, où chaque brin comprend de 15 à environ 30 nucléotides, et chaque brin comprend au moins 15 à environ 30 nucléotides qui sont complémentaires des nucléotides de l'autre brin, préférentiellement ladite petite molécule d'acide nucléique interférant double brin comprend un duplex de 19 à 21 nucléotides.</claim-text></claim>
<claim id="c-fr-01-0003" num="0003">
<claim-text>Petite molécule d'acide nucléique interférant double brin selon l'une quelconque des revendications 1 à 3, où la région sens comprend une séquence de nucléotide ayant l'une quelconque des SEQ ID NO: 64 et 70, et la région anti-sens comprend une séquence de nucléotide ayant l'une quelconque des SEQ ID NO: 101 et 102, respectivement, préférentiellement ladite petite molécule d'acide nucléique interférant double brin comprend :
<claim-text>• de 1 à environ 3 nucléotides dépassant à l'extrémité 3' de chaque brin, ou</claim-text>
<claim-text>• une(des) extrémité(s) franche(s)</claim-text></claim-text></claim>
<claim id="c-fr-01-0004" num="0004">
<claim-text>Petite molécule d'acide nucléique interférant double brin selon l'une quelconque des revendications 1 à 3, qui est assemblée à partir de deux fragments d'oligonucléotides, où un fragment comprend la région sens et le second fragment comprend la région anti-sens de la petite molécule d'acide nucléique, préférentiellement la région sens est connectée à la région anti-sens par une molécule de liaison, plus préférentiellement, en particulier, ladite petite molécule d'acide nucléique interférant double brin comprend des ribonucléotides un ou plusieurs nucléotides pyrimidiques et/ou puriques modifiés.<!-- EPO <DP n="53"> --></claim-text></claim>
<claim id="c-fr-01-0005" num="0005">
<claim-text>Petite molécule d'acide nucléique interférant double brin selon l'une quelconque des revendications 1 à 4, où le brin comprenant la région sens comprend une coiffe terminale à l'extremité 5' et/ou 3'.</claim-text></claim>
<claim id="c-fr-01-0006" num="0006">
<claim-text>Petite molécule d'acide nucléique interférant double brin selon l'une quelconque des revendications 1 à 5, où le brin comprenant ladite région anti-sens inclut un groupement phosphate à l'extrémité 5'.</claim-text></claim>
<claim id="c-fr-01-0007" num="0007">
<claim-text>Petite molécule d'acide nucléique interférant double brin selon l'une quelconque des revendications 1 à 5, qui comprend au moins une liaison intemucléotidique modifiée.</claim-text></claim>
<claim id="c-fr-01-0008" num="0008">
<claim-text>Unité de transcription comprenant : une région d'initiation de la transcription, une région de terminaison de la transcription, et une séquence d'acides nucléique codant au moins une petite molécule d'acide nucléique interférant selon l'une quelconque des revendications 1 à 4 et 6, où ladite séquence d'acide nucléique est opérationnellement liée à ladite région d'initiation d'une manière à permettre l'expression et/ou la libération d'une petite molécule d'acide nucléique interférant.</claim-text></claim>
<claim id="c-fr-01-0009" num="0009">
<claim-text>Vecteur d'expression comprenant une unité de transcription selon la revendication 8.</claim-text></claim>
<claim id="c-fr-01-0010" num="0010">
<claim-text>Cellule qui est modifiée par un vecteur selon la revendication 9.</claim-text></claim>
<claim id="c-fr-01-0011" num="0011">
<claim-text>Composition pharmaceutique comprenant au moins une petite molécule d'acide nucléique interférant selon l'une quelconque des revendications 1 à 7 ou un vecteur selon la revendication 9, dans un véhicule acceptable, en particulier en association avec au moins un anti-cancéreux.</claim-text></claim>
<claim id="c-fr-01-0012" num="0012">
<claim-text>Composition selon la revendication 11, qui comprend une combinaison d'au moins deux petites molécules d'acide nucléique interférent différentes, en particulier en association avec au moins un anti-cancéreux.</claim-text></claim>
<claim id="c-fr-01-0013" num="0013">
<claim-text>Petite molécule d'acide nucléique interférant double brin selon l'une quelconque des revendications 1 à 7 ou un vecteur selon la revendication 9 pour la préparation d'un médicament pour le traitement du cancer.<!-- EPO <DP n="54"> --></claim-text></claim>
<claim id="c-fr-01-0014" num="0014">
<claim-text>Produit contenant au moins une petite molécule d'acide nucléique interférant selon l'une quelconque des revendications 1 à 7 ou vecteur selon la revendication 9, et un anticancéreux, en tant que préparation combinée pour une utilisation simultanée, séparée ou séquentielle dans le cadre d'une thérapie anticancéreuse.</claim-text></claim>
<claim id="c-fr-01-0015" num="0015">
<claim-text>Produit selon la revendication 14, où ladite molécule pANi ou vecteur est utilisée dans le cadre d'une thérapie anticancéreuse avant l'anticancéreux.</claim-text></claim>
</claims><!-- EPO <DP n="55"> -->
<drawings id="draw" lang="en">
<figure id="f0001" num="1"><img id="if0001" file="imgf0001.tif" wi="158" he="188" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="56"> -->
<figure id="f0002" num="2"><img id="if0002" file="imgf0002.tif" wi="142" he="87" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="57"> -->
<figure id="f0003" num="3"><img id="if0003" file="imgf0003.tif" wi="138" he="68" img-content="drawing" img-format="tif"/></figure>
</drawings>
<ep-reference-list id="ref-list">
<heading id="ref-h0001"><b>REFERENCES CITED IN THE DESCRIPTION</b></heading>
<p id="ref-p0001" num=""><i>This list of references cited by the applicant is for the reader's convenience only. It does not form part of the European patent document. Even though great care has been taken in compiling the references, errors or omissions cannot be excluded and the EPO disclaims all liability in this regard.</i></p>
<heading id="ref-h0002"><b>Patent documents cited in the description</b></heading>
<p id="ref-p0002" num="">
<ul id="ref-ul0001" list-style="bullet">
<li><patcit id="ref-pcit0001" dnum="WO0175164A"><document-id><country>WO</country><doc-number>0175164</doc-number><kind>A</kind></document-id></patcit><crossref idref="pcit0001">[0030]</crossref></li>
</ul></p>
<heading id="ref-h0003"><b>Non-patent literature cited in the description</b></heading>
<p id="ref-p0003" num="">
<ul id="ref-ul0002" list-style="bullet">
<li><nplcit id="ref-ncit0001" npl-type="s"><article><author><name>Ohgaki, H.</name></author><author><name>Kleihues, P.</name></author><atl/><serial><sertitle>acta Neuropathol.</sertitle><pubdate><sdate>20050000</sdate><edate/></pubdate><vid>109</vid></serial><location><pp><ppf>93</ppf><ppl>108</ppl></pp></location></article></nplcit><crossref idref="ncit0001">[0002]</crossref></li>
<li><nplcit id="ref-ncit0002" npl-type="s"><article><author><name>Chinot, O.</name></author><author><name>Martin, P.M.</name></author><atl/><serial><sertitle>Biologie des tumeurs cérébrales gliales</sertitle><pubdate><sdate>19960000</sdate><edate/></pubdate></serial></article></nplcit><crossref idref="ncit0002">[0002]</crossref></li>
<li><nplcit id="ref-ncit0003" npl-type="s"><article><author><name>Stupp et al.</name></author><atl/><serial><sertitle>N. Engl. J. Med.</sertitle><pubdate><sdate>20050000</sdate><edate/></pubdate><vid>352</vid></serial><location><pp><ppf>987</ppf><ppl>996</ppl></pp></location></article></nplcit><crossref idref="ncit0003">[0002]</crossref></li>
<li><nplcit id="ref-ncit0004" npl-type="s"><article><author><name>Harris, A.L.</name></author><atl/><serial><sertitle>Int. J. Radial. Biol. Relat. Stud. Phys. Chem. Med.</sertitle><pubdate><sdate>19850000</sdate><edate/></pubdate><vid>48</vid></serial><location><pp><ppf>675</ppf><ppl>680</ppl></pp></location></article></nplcit><crossref idref="ncit0004">[0003]</crossref></li>
<li><nplcit id="ref-ncit0005" npl-type="s"><article><author><name>Perry et al.</name></author><atl/><serial><sertitle>Arch. Neural</sertitle><pubdate><sdate>19990000</sdate><edate/></pubdate><vid>56</vid></serial><location><pp><ppf>434</ppf><ppl>436</ppl></pp></location></article></nplcit><crossref idref="ncit0005">[0004]</crossref></li>
<li><nplcit id="ref-ncit0006" npl-type="s"><article><author><name>Cairncross et al.</name></author><atl/><serial><sertitle>J. Nail. Carter lnst.</sertitle><pubdate><sdate>19980000</sdate><edate/></pubdate><vid>90</vid></serial><location><pp><ppf>1473</ppf><ppl>1479</ppl></pp></location></article></nplcit><crossref idref="ncit0006">[0004]</crossref></li>
<li><nplcit id="ref-ncit0007" npl-type="s"><article><author><name>Smith et al.</name></author><atl/><serial><sertitle>Oneogene</sertitle><pubdate><sdate>19990000</sdate><edate/></pubdate><vid>18</vid></serial><location><pp><ppf>4144</ppf><ppl>4152</ppl></pp></location></article></nplcit><crossref idref="ncit0007">[0004]</crossref></li>
<li><nplcit id="ref-ncit0008" npl-type="s"><article><author><name>Ashmore et al.</name></author><atl/><serial><sertitle>Anticancer drugs</sertitle><pubdate><sdate>19990000</sdate><edate/></pubdate><vid>10</vid></serial><location><pp><ppf>861</ppf><ppl>872</ppl></pp></location></article></nplcit><crossref idref="ncit0008">[0005]</crossref></li>
<li><nplcit id="ref-ncit0009" npl-type="s"><article><author><name>Demeule et al.</name></author><atl/><serial><sertitle>Int. J. Cancer</sertitle><pubdate><sdate>20010000</sdate><edate/></pubdate><vid>93</vid></serial><location><pp><ppf>62</ppf><ppl>66</ppl></pp></location></article></nplcit><crossref idref="ncit0009">[0005]</crossref></li>
<li><nplcit id="ref-ncit0010" npl-type="s"><article><author><name>Bahr et al.</name></author><atl/><serial><sertitle>Brain Pathol.</sertitle><pubdate><sdate>20030000</sdate><edate/></pubdate><vid>13</vid></serial><location><pp><ppf>482</ppf><ppl>494</ppl></pp></location></article></nplcit><crossref idref="ncit0010">[0005]</crossref></li>
<li><nplcit id="ref-ncit0011" npl-type="s"><article><author><name>Li et al.</name></author><atl/><serial><sertitle>Anticancer Res.</sertitle><pubdate><sdate>20000000</sdate><edate/></pubdate><vid>20</vid></serial><location><pp><ppf>645</ppf><ppl>652</ppl></pp></location></article></nplcit><crossref idref="ncit0011">[0012]</crossref><crossref idref="ncit0015">[0013]</crossref></li>
<li><nplcit id="ref-ncit0012" npl-type="s"><article><author><name>Wu et al.</name></author><atl/><serial><sertitle>Clin. Cancer Res</sertitle><pubdate><sdate>20030000</sdate><edate/></pubdate><vid>9</vid></serial><location><pp><ppf>5874</ppf><ppl>5879</ppl></pp></location></article></nplcit><crossref idref="ncit0012">[0012]</crossref></li>
<li><nplcit id="ref-ncit0013" npl-type="s"><article><author><name>Bosken et al.</name></author><atl/><serial><sertitle>J. Natl. Cancer Inst.</sertitle><pubdate><sdate>20020000</sdate><edate/></pubdate><vid>94</vid></serial><location><pp><ppf>1091</ppf><ppl>1099</ppl></pp></location></article></nplcit><crossref idref="ncit0013">[0012]</crossref></li>
<li><nplcit id="ref-ncit0014" npl-type="s"><article><author><name>Chaney S.G.</name></author><author><name>Sancar A.</name></author><atl/><serial><sertitle>J. Natl. Cancer Inst.</sertitle><pubdate><sdate>19960000</sdate><edate/></pubdate><vid>88</vid></serial><location><pp><ppf>1346</ppf><ppl>1360</ppl></pp></location></article></nplcit><crossref idref="ncit0014">[0013]</crossref></li>
<li><nplcit id="ref-ncit0015" npl-type="s"><article><author><name>Selvakumaran et al.</name></author><atl/><serial><sertitle>Cancer Res.</sertitle><pubdate><sdate>20030000</sdate><edate/></pubdate><vid>63</vid></serial><location><pp><ppf>1311</ppf><ppl>1316</ppl></pp></location></article></nplcit><crossref idref="ncit0016">[0013]</crossref></li>
<li><nplcit id="ref-ncit0016" npl-type="s"><article><author><name>Youn et al.</name></author><atl/><serial><sertitle>Cancer Res.</sertitle><pubdate><sdate>20040000</sdate><edate/></pubdate><vid>64</vid></serial><location><pp><ppf>4849</ppf><ppl>4857</ppl></pp></location></article></nplcit><crossref idref="ncit0017">[0013]</crossref></li>
<li><nplcit id="ref-ncit0017" npl-type="s"><article><author><name>Chang et al.</name></author><atl/><serial><sertitle>Biochem. Biophys. Res. Commun.</sertitle><pubdate><sdate>20050000</sdate><edate/></pubdate><vid>327</vid></serial><location><pp><ppf>225</ppf><ppl>233</ppl></pp></location></article></nplcit><crossref idref="ncit0018">[0013]</crossref></li>
<li><nplcit id="ref-ncit0018" npl-type="s"><article><author><name>Chen et al.</name></author><atl/><serial><sertitle>Ai Zheng</sertitle><pubdate><sdate>20020000</sdate><edate/></pubdate><vid>21</vid></serial><location><pp><ppf>233</ppf><ppl>239</ppl></pp></location></article></nplcit><crossref idref="ncit0019">[0014]</crossref></li>
<li><nplcit id="ref-ncit0019" npl-type="s"><article><author><name>Xu et al.</name></author><atl/><serial><sertitle>Anticancer drugs</sertitle><pubdate><sdate>20020000</sdate><edate/></pubdate><vid>13</vid></serial><location><pp><ppf>511</ppf><ppl>519</ppl></pp></location></article></nplcit><crossref idref="ncit0020">[0014]</crossref></li>
<li><nplcit id="ref-ncit0020" npl-type="s"><article><author><name>Chen et al.</name></author><atl/><serial><sertitle>Neurosurgery</sertitle><pubdate><sdate>19980000</sdate><edate/></pubdate><vid>42</vid></serial><location><pp><ppf>1112</ppf><ppl>1119</ppl></pp></location></article></nplcit><crossref idref="ncit0021">[0014]</crossref></li>
<li><nplcit id="ref-ncit0021" npl-type="s"><article><author><name>Chen et al.</name></author><atl/><serial><sertitle>Chin. Med. J.</sertitle><pubdate><sdate>20030000</sdate><edate/></pubdate><vid>116</vid></serial><location><pp><ppf>1171</ppf><ppl>1174</ppl></pp></location></article></nplcit><crossref idref="ncit0022">[0014]</crossref></li>
<li><nplcit id="ref-ncit0022" npl-type="s"><article><author><name>Shuey et al.</name></author><atl/><serial><sertitle>Drug Discovery Today</sertitle><pubdate><sdate>20020000</sdate><edate/></pubdate><vid>7</vid></serial><location><pp><ppf>1040</ppf><ppl>1046</ppl></pp></location></article></nplcit><crossref idref="ncit0023">[0015]</crossref></li>
<li><nplcit id="ref-ncit0023" npl-type="s"><article><author><name>Chow et al.</name></author><atl/><serial><sertitle>Lancet Oncol.</sertitle><pubdate><sdate>20040000</sdate><edate/></pubdate><vid>5</vid></serial><location><pp><ppf>600</ppf><ppl>606</ppl></pp></location></article></nplcit><crossref idref="ncit0024">[0017]</crossref></li>
<li><nplcit id="ref-ncit0024" npl-type="s"><article><author><name>Whitehouse et al.</name></author><atl/><serial><sertitle>Celt</sertitle><pubdate><sdate>20010000</sdate><edate/></pubdate><vid>104</vid></serial><location><pp><ppf>107</ppf><ppl>117</ppl></pp></location></article></nplcit><crossref idref="ncit0025">[0017]</crossref></li>
<li><nplcit id="ref-ncit0025" npl-type="s"><article><author><name>Chappell et al.</name></author><atl/><serial><sertitle>EMBO J.</sertitle><pubdate><sdate>20020000</sdate><edate/></pubdate><vid>21</vid></serial><location><pp><ppf>2827</ppf><ppl>2832</ppl></pp></location></article></nplcit><crossref idref="ncit0026">[0017]</crossref></li>
<li><nplcit id="ref-ncit0026" npl-type="s"><article><author><name>Rasouli-Nia et al.</name></author><atl/><serial><sertitle>P.N.A.S.</sertitle><pubdate><sdate>20040000</sdate><edate/></pubdate><vid>101</vid></serial><location><pp><ppf>6905</ppf><ppl>6910</ppl></pp></location></article></nplcit><crossref idref="ncit0027">[0017]</crossref></li>
<li><nplcit id="ref-ncit0027" npl-type="s"><article><author><name>Kamataki et al.</name></author><atl/><serial><sertitle>Biochem. Res. Comm.</sertitle><pubdate><sdate>20050919</sdate><edate/></pubdate></serial></article></nplcit><crossref idref="ncit0028">[0018]</crossref></li>
<li><nplcit id="ref-ncit0028" npl-type="s"><article><author><name>Imaoka et al.</name></author><atl/><serial><sertitle>Biochem. Res. Comm.</sertitle><pubdate><sdate>20000000</sdate><edate/></pubdate><vid>277</vid></serial><location><pp><ppf>776</ppf><ppl>780</ppl></pp></location></article></nplcit><crossref idref="ncit0029">[0018]</crossref></li>
<li><nplcit id="ref-ncit0029" npl-type="s"><article><author><name>Elbashir et al.</name></author><atl/><serial><sertitle>Nature</sertitle><pubdate><sdate>20010000</sdate><edate/></pubdate><vid>411</vid></serial><location><pp><ppf>494</ppf><ppl/></pp></location></article></nplcit><crossref idref="ncit0030">[0030]</crossref></li>
<li><nplcit id="ref-ncit0030" npl-type="s"><article><author><name>Turner et al.</name></author><atl/><serial><sertitle>CSH Symp. Quant. Biol.</sertitle><pubdate><sdate>19870000</sdate><edate/></pubdate><vid>LII</vid></serial><location><pp><ppf>123</ppf><ppl>133</ppl></pp></location></article></nplcit><crossref idref="ncit0031">[0030]</crossref></li>
<li><nplcit id="ref-ncit0031" npl-type="s"><article><author><name>Frier et al.</name></author><atl/><serial><sertitle>P.N.A.S.</sertitle><pubdate><sdate>19860000</sdate><edate/></pubdate><vid>83</vid></serial><location><pp><ppf>9373</ppf><ppl>9377</ppl></pp></location></article></nplcit><crossref idref="ncit0032">[0030]</crossref></li>
<li><nplcit id="ref-ncit0032" npl-type="s"><article><author><name>Turner</name></author><atl/><serial><sertitle>J. Am. Chem. Soc</sertitle><pubdate><sdate>19870000</sdate><edate/></pubdate><vid>109</vid></serial><location><pp><ppf>3783</ppf><ppl>3785</ppl></pp></location></article></nplcit><crossref idref="ncit0033">[0030]</crossref></li>
<li><nplcit id="ref-ncit0033" npl-type="s"><article><author><name>Usman</name></author><author><name>Cedergen</name></author><atl/><serial><sertitle>TIBS</sertitle><pubdate><sdate>19920000</sdate><edate/></pubdate><vid>17</vid></serial><location><pp><ppf>34</ppf><ppl/></pp></location></article></nplcit><crossref idref="ncit0034">[0045]</crossref></li>
<li><nplcit id="ref-ncit0034" npl-type="s"><article><author><name>Usman et al.</name></author><atl/><serial><sertitle>Nucleic Acids Symp. Ser.</sertitle><pubdate><sdate>19940000</sdate><edate/></pubdate><vid>31</vid></serial><location><pp><ppf>163</ppf><ppl/></pp></location></article></nplcit><crossref idref="ncit0035">[0045]</crossref></li>
<li><nplcit id="ref-ncit0035" npl-type="s"><article><author><name>Smith et al.</name></author><atl/><serial><sertitle>Oncogene</sertitle><pubdate><sdate>19990000</sdate><edate/></pubdate><vid>18</vid></serial><location><pp><ppf>4144</ppf><ppl>4152</ppl></pp></location></article></nplcit><crossref idref="ncit0036">[0076]</crossref></li>
<li><nplcit id="ref-ncit0036" npl-type="s"><article><author><name>Wood et al.</name></author><atl/><serial><sertitle>Mutant. Res.</sertitle><pubdate><sdate>20050000</sdate><edate/></pubdate><vid>577</vid></serial><location><pp><ppf>275</ppf><ppl>283</ppl></pp></location></article></nplcit><crossref idref="ncit0037">[0076]</crossref></li>
<li><nplcit id="ref-ncit0037" npl-type="s"><article><author><name>Harris, A.L.</name></author><atl/><serial><sertitle>Int J Radiat Biol Relat Stud Phys Chem Med</sertitle><pubdate><sdate>19850000</sdate><edate/></pubdate><vid>48</vid></serial><location><pp><ppf>675</ppf><ppl>90</ppl></pp></location></article></nplcit><crossref idref="ncit0038">[0076]</crossref></li>
<li><nplcit id="ref-ncit0038" npl-type="s"><article><author><name>Christmann et al.</name></author><atl/><serial><sertitle>Toxicology</sertitle><pubdate><sdate>20030000</sdate><edate/></pubdate><vid>193</vid></serial><location><pp><ppf>3</ppf><ppl>34</ppl></pp></location></article></nplcit><crossref idref="ncit0039">[0076]</crossref></li>
<li><nplcit id="ref-ncit0039" npl-type="s"><article><author><name>Wood et al.</name></author><atl/><serial><sertitle>Mutat. Res.</sertitle><pubdate><sdate>20050000</sdate><edate/></pubdate><vid>577</vid></serial><location><pp><ppf>275</ppf><ppl>283</ppl></pp></location></article></nplcit><crossref idref="ncit0040">[0076]</crossref></li>
</ul></p>
</ep-reference-list>
</ep-patent-document>
