Field of the invention
[0001] The present invention relates to lipid assemblies or liposomes that are capable of
overcoming a lipoprotein mediated uptake blockade. More specifically, this invention
relates to improvements in liposomes comprising both negatively charged lipids having
a carboxylic or phosphate head group and positively charged lipids having imino or
guanido moieties or derivatives thereof in the respective polar regions.
Background to the invention
[0002] Liposomes have widespread use as carriers for active ingredients. Neutral or negatively
charged liposomes are often used for the delivery of small molecule drugs, whereas
positively charged (cationic) or the recently introduced class of amphoteric liposomes
are mainly used for the delivery of nucleic acids such as plasmids or oligonucleotides.
Important examples for cationic liposomes used for the delivery of nucleic acid cargoes
include, but are not limited to
Semple et al., Nat. Biotech. (2010) 28:172-176;
Akinc et al., Nat. Biotech. (2008) 26:561 -569;
Chien et al., Cancer Gene Ther. (2005) 12:321 - 328;
de Fougerolles, Nat. Rev. Drug Discov. (2007) 6:443 - 453;
Kim et al., Mol. Ther. (2006) 14:343 - 350;
Morrissey, Nat. Biotech. (2005) 23: 1002 - 1007;
Peer, Science (2008) 319: 627 - 630 and
Santel, Gene Ther. (2006) 13: 1222 - 1234. Application of amphoteric liposomes for the delivery of nucleic acids has been demonstrated
in
Andreakos et al., Arthritis Rheum. (2009) 60:994 - 1005.
[0003] Amphoteric liposomes belong to the larger family of pH-sensitive liposomes, which
further comprise pH-sensitive anionic or cationic liposomes, prototypes of which have
been presented in
Lai et al., Biochemistry (1985) 24:1654-1661 and
Budker et al., Nat. Biotech. (1996) 14:760-764. Unlike the pH-sensitive anionic or cationic liposomes, amphoteric liposomes are
complex structures and comprise at least a pair of lipids having complementary charge.
WO 02/066012 discloses a key feature of amphoteric liposomes in that these have a stable phase
at both low and neutral pH.
WO 02/066012 and
WO07/107304 describe a method of loading such particles with nucleic acids starting from a low
pH.
[0004] Hafez, et al. (Biophys. J. 2000, 79(3), 1438-1446) and
WO 02/066012 provide some guidance as to how to select lipid mixtures with truly amphoteric properties
and more specifically how to determine their isoelectric point and onset of fusion.
Neutral lipids can be additional constituents of amphoteric liposomes. The inclusion
of one or more such neutral lipids significantly adds to the complexity of the mixture,
especially since the individual amounts of all the components may vary. The very high
number of possible combinations of lipids represents a practical hurdle towards a
more rapid optimisation of amphoteric liposomes. In this regard,
WO08/043575 reveals strategies for the optimization of stability, fusogenicity and cellular transfection
of amphoteric liposomes, particularly a method of predicting which mixtures of lipids
form satisfactorily stable lamellar phases at high and low pH, whilst forming a fusogenic,
hexagonal phase at an intermediate pH.
[0005] The amphoteric liposomes according to the abovementioned references are potent transfectants
of cells. However, it was observed that the function of some of these liposomes could
be blocked by the addition of certain sera, thereby potentially limiting the activity
of these liposomes for the targeting of certain cells
in vivo. This is further illustrated in the Examples presented herein, e.g., Example 3.
[0007] A more detailed investigation revealed lipoproteins as mediators of this inhibitory
effect. As shown in Example 4 herein, human serum deficient of lipoproteins is no
longer able to inhibit the uptake of liposomes as indicated by the functional delivery
of siRNA to the challenged cells. The inventors have now surprisingly and unexpectedly
found that certain species of cationic imino lipids in combination with anionic lipids
having a carboxyl or phosphate moiety in their polar head groups are particularly
advantageous in maintaining transfection activity in the presence of serum. Frequently,
a particular advantage was observed when the lipid assemblies or liposomes created
from said lipid mixtures were formulated according to the method described herein
and in
WO08/043575.
Object of the invention
[0008] It was therefore an object of the invention to provide lipid assemblies or liposomes
that can transfect cells in the presence of various sera.
[0009] Another object of the invention is to provide pharmaceutical compositions comprising
such liposomes as a carrier for the delivery of active agents or ingredients, including
drugs such as nucleic acid drugs, e.g., oligonucleotides and plasmids into cells or
tissues.
Summary of the Invention
[0010] The present invention provides lipid assemblies, liposomes and their use for transfection
of cells wherein said lipid assemblies comprise anionic and cationic amphiphiles and
wherein at least a portion of the cationic amphiphiles are imino lipids that are substantially
charged at pH7.5, and wherein the anionic amphiphiles are carboxyl or phosphate lipids
and wherein further the charge ratio between the cationic and anionic amphiphiles
is 1.5 or less.
[0011] In various embodiments of the invention, lipid assemblies comprising anionic and
cationic amphiphiles are provided wherein at least a portion of the cationic amphiphiles
are imino lipids that are substantially charged under physiological conditions, and
wherein further at least a portion of the anionic amphiphiles are carboxyl lipids,
and wherein the ratio between the cationic and anionic amphiphiles is lower or equal
to 1.5.
[0012] In more specific aspects of the invention, lipid assemblies comprising a combination
of lipids are provided wherein the cationic lipids of said combination comprise a
guanido moiety and the anionic lipids of said combination comprise a carboxyl group,
further characterized in that the ratio between the guanido moieties and the carboxyl
groups is lower or equal to 1.5.
[0013] In other embodiments of the invention, lipid assemblies comprising anionic and cationic
amphiphiles are provided wherein at least a portion of the cationic amphiphiles are
imino lipids that are substantially charged under physiological conditions, and wherein
further at least a portion of the anionic amphiphiles are phosphate lipids, and wherein
the ratio between the cationic and anionic amphiphiles is lower or equal to 1.5. In
further preferred aspects of such embodiments, the imino lipids are guanido lipids.
[0014] The charged imino groups of the cationic amphiphiles of the inventions have a pK
of greater than 7.5 and are selected from imines, amidines, pyridines, 2-aminopyridines,
heterocyclic nitrogen bases, guanido moieties, isoureas or thioisoureas. In preferred
embodiments, the cationic lipids are selected from the group of PONA, CHOLGUA, GUADACA,
MPDACA or SAINT-18.
[0015] In preferred embodiments, the anionic lipids are selected from the group of CHEMS,
DMGS, DOGS, DOPA or POPA.
[0016] In many embodiments, the lipid assemblies of the invention are liposomes.
[0017] In further embodiments, the lipid assemblies also comprise neutral lipids such as
cholesterol, phosphatidylcholine, phosphatidylethanolamine or sphingomyelin or mixtures
thereof.
[0018] In preferred embodiments the neutral lipid is cholesterol and the molar fraction
of cholesterol in the lipid mixture is between 10 and 50 mol%.
[0019] In some embodiments, the lipid assemblies also comprise PEGylated lipids and in preferred
aspects of such embodiments the liposomes are produced by a process comprising the
steps of (i) formation and sealing of the liposomes in the presence of an active ingredient
and (ii) a separate addition of PEG-lipids after said step (i).
[0020] It was unexpectedly found that serum resistant transfection can be achieved with
lipid assemblies or liposomes having an outer surface comprising a mixture of anionic
and cationic moieties; wherein at least a portion of the cationic moieties are imino
moieties that are essentially charged under physiological conditions. In numerous
embodiments, the lipid assemblies and liposomes of the present invention are formulated
using a method described in
WO08/043575 and also described in more detail herein.
Detailed description of the invention
Lipid Chemistry
[0021] By "chargeable" is meant that the amphiphile has a pK in the range between 4 to pH
8. A chargeable amphiphile may therefore be a weak acid or base. "Stable" in connection
with charged amphiphiles means a strong acid or base with a pK outside this range,
which results in substantially stable charge on the range pH 4 to pH 8.
[0022] By "amphoteric" herein is meant a substance, a mixture of substances or a supra-molecular
complex (e.g., a liposome) comprising charged groups of both anionic and cationic
character wherein:
- 1) at least one, and optionally both, of the cation and anionic amphiphiles is chargeable,
having at least one charged group with a pK between 4 and 8,
- 2) the cationic charge prevails at pH 4, and
- 3) the anionic charge prevails at pH 8.
[0023] As a result the substance or mixture of substances has an isoelectric point of neutral
net charge between pH 4 and pH 8. Amphoteric character is by this definition different
from zwitterionic character, as zwitterions do not have a pK in the range mentioned
above. In consequence, zwitterions are essentially neutrally charged over a range
of pH values; phosphatidylcholines and phosphatidylethanolamines are neutral lipids
with zwitterionic character.
[0024] By "charge ratio" or "C/A" herein is meant the absolute value or modulus of the ratio
between the nominal charges usually assigned to the cationic and anionic amphiphiles,
respectively. The nominal charge of a carboxyl group is "-1", that of a phosphate
moiety is "-2" and the nominal charge of an imino compound is "+1". The "charge ratio"
in a given mixture of amphiphiles or in a lipid assembly is then calculated from the
product of these nominal charges and the respective molar fractions of the compounds
considered, neutral compounds such as cholesterol or zwitterionic amphiphiles such
as POPC or DOPE are not taken into account.

[0025] Wherein x
c1...n represents the molar fraction of a given cationic compound, x
a1...n represents the molar fractions of anionic compounds, z
c1...n stands for the nominal charge of a given cationic compound and z
a1...n represents the nominal charge of the anionic compound.
[0026] As an example, a mixture comprising 42 mol% of a carboxyl lipid, 38% of an imino
lipid and 20mol% of a neutral lipid has a charge ratio or C/A of 38/42=0.91. Another
mixture comprising 27% of a phosphate lipid, 43mol% of an imino lipid and 30 mol%
of a neutral lipid has a charge ratio or C/A of 43/54=0.8 due to the double nominal
charge of the phosphate group.
[0027] It becomes apparent from the definition and examples, that molar ratios or - for
the sake of brevity - ratios between lipids and charge ratios have the same meaning
for single-charged species and that these terms can be mutually exchanged within that
group. This is for example the case for combinations of imino and carboxy lipids.
In contrast to that, the molar ratio is different from the charge ratio for phosphate
lipids, since these compounds may bear a double charge, e.g. in cases where the phosphate
group is present as a primary phosphate ester as in DOPA. As shown in the calculation
example above, the molar ratio or lipid ratio is then double the charge ratio. For
the sake of clarity only, the term "charge ratio" is used with preference throughout
this disclosure.
[0028] By "physiological pH" or "physiological conditions" herein is meant a pH of about
7.5.
[0029] Anionic lipids comprising carboxyl moieties in their polar head groups are well known
to the skilled artisan. Examples of anionic lipids comprising carboxyl moieties in
the polar head groups can be selected from the structures (1) - (4) below,

wherein n or m is an integer between 0 and 29, R
1 and R
2 are independently from each other an alkyl, alkenyl or alkinyl moieties having between
8 and 24 carbon atoms and 0, 1 or 2 unsaturated bonds, A, B or D are independently
from each other absent, -CH2-, -CH=, =CH-, -O-, -NH-, -C(O)-O-, -O-C(O)-, -C(O)-NH-,
-NH-C(O)-, -O-C(O)-NH-, -NH-C(O)-O-, a phosphoric or phosphorous acid diester, and
"sterol" can be a cholesterol attached via its C3 atom.
[0030] The list below provides further specific examples of lipids carrying a carboxyl group.
- CHEMS
- Cholesterolhemisuccinate
- Chol-COOH or Chol-C1
- Cholesteryl-3-carboxylic acid
- Chol-C2
- Cholesterolhemioxatate
- Chol-C3
- Cholesterolhemimalonate
- Chol-C3N
- N-(Cholesteryl-oxycarbonyl)glycine
- Chol-C5
- Cholesterolhemiglutarate
- Chol-C6
- Cholesterolhemiadipate
- Chol-C7
- Cholesterolhemipimelate
- Chol-C8
- Cholesterolhemisuberate
- Chol-C12
- Cholesterolhemidodecane dicarboxylic acid
- Chol-C13N
- 12-Cholesteryloxycarbonylaminododecanoic acid
- Chol-C16
- Cholesterolhemihexadecane dicarboxylic acid
[0031] Cholesterolhemidicarboxylic acids and Cholesteryloxycarbonylaminocarboxylic acids
of following general formula:

wherein Z is C or -NH- and n is any number between 0 and 29.
[0032] DGS or DG-SuccDiacylglycerolhemisuccinate (unspecified membrane anchor)
- DOGS or DOG-Succ
- Dioleoylglycerolhemisuccinate
- DMGS or DMG-Succ
- Dimyristoylglycerolhemisuccinate
- DPGS or DPG-Succ
- Dipalmitoylglycerolhemisuccinate
- DSGS or DSG-Succ
- Distearoylglycerolhemisuccinate
- POGS or POG-Succ
- 1-Palmitoyl-2-oleoylglycerol-hemisuccinate
- DOGM
- Dioleoylglycerolhemimalonate
- DOGG
- Dioleoylglycerolhemiglutarate
- DOGA
- Dioleoylglycerolhemiadipate
- DMGM
- Dimyristoylglycerolhemimalonate
- DMGG
- Dimyristoylglycerolhemiglutarate
- DMGA
- Dimyristoylglycerolhemiadipate
- DOAS
- 4-{(2,3-Dioleoyl-propyl)amino}-4-oxobutanoic acid
- DOAM
- 3-{(2,3-Dioleoyl-propyl)amino}-3-oxopropanoic acid
- DOAG
- 5-{(2,3-Dioleoyl-propyl)amino}-5-oxopentanoic acid
- DOAA
- 6-{(2,3-Dioleoyl-propyl)amino}-6-oxohexanoic acid
- DMAS
- 4-{(2,3-Dimyristoyl-propyl)amino}-4-oxobutanoic acid
- DMAM
- 3-{(2,3-Dimyristoyl-propyl)amino}-3-oxopropanoic acid
- DMAG
- 5-{(2,3-Dimyristoyl-propyl)amino}-5-oxopentanoic acid
- DMAA
- 6-{(2,3-Dimyristoyl-propyl)amino}-6-oxohexanoic acid
- DOP
- 2,3-Dioleoyl-propanoic acid
- DOB
- 3,4-Dioleoyl-butanoic acid
- DOS
- 5,6-Dioleoyl-hexanoic acid
- DOM
- 4,5-Dioleoyl-pentanoic acid
- DOG
- 6,7-Dioleoyl-heptanoic acid
- DOA
- 7,8-Dioleoyl-octanoic acid
- DMP
- 2,3-Dimyristoyl-propanoic acid
- DMB
- 3,4-Dimyristoyl-butanoic acid
- DMS
- 5,6-Dimyristoyl-hexanoic acid
- DMM
- 4,5-Dimyristoyl-pentanoic acid
- DMG
- 6,7-Dimyristoyl-heptanoic acid
- DMA
- 7,8-Dimyristoyl-octanoic acid
- DOG-GluA
- Dioleoylglycerol-glucoronic acid (1- or 4-linked)
- DMG-GluA
- Dimyristoylglycerol-glucoronic acid (1- or 4-linked)
- DO-cHA
- Dioleoylglycerolhemicyclohexane-1,4-dicarboxylic acid
- DM-cHA
- Dimyristoylglycerolhemicyclohexane-1,4-dicarboxylic acid
- PS
- Phosphatidylserine (unspecified membrane anchor)
- DOPS
- Dioleoylphosphatidylserine
- DPPS
- Dipalmitoylphosphatidylserine
- MA
- Myristic Acid
- PA
- Palmitic Acid
- OA
- Oleic Acid
- LA
- Linoleic Acid
- SA
- Stearic Acid
- NA
- Nervonic Acid
- BA
- Behenic Acid
- POGA
- Palmitoyl-oleoyl-glutamic acid
- DPAA
- Dipalmitoylaspartic acid
[0033] Any dialkyl derivatives of the anionic lipids comprising diacyl groups listed above
are also within the scope of the present invention.
[0034] Preferred anionic lipids having a carboxyl group can be selected from the group of
Chol-C1 to Chol-C16 including all its homologues, in particular CHEMS. Also preferred
are the anionic lipids DMGS, DPGS, DSGS, DOGS, POGS.
[0035] Anionic lipids comprising phosphate moieties in their polar head groups are well
known to the skilled artisan. Examples for phosphate lipids can be selected from structures
(P1) - (P4) below:

wherein n or m is an integer between 0 and 29, R
1 and R
2 are independently from each other an alkyl, alkenyl or alkinyl moieties having between
8 and 24 carbon atoms and 0, 1 or 2 unsaturated bonds, A, B or D are independently
from each other absent, -CH2-, -CH=, =CH-, -O-, -NH-, -C(O)-O-, -O-C(O)-, -C(O)-NH-,
-NH-C(O)-, -O-C(O)-NH- or -NH-C(O)-O- and "sterol" can be a cholesterol attached via
its C3 atom.
[0036] The list below provides further specific examples of lipids carrying a phosphatidic
acid group.
- Chol-P
- Cholesterol-3-phosphate
- DOPA
- Dioleoyl-phosphatidic acid
- POPA
- Palmitoyl-oleoyl-phosphatidic acid
- DPPA
- Dipalmitoyl-phosphatidic acid
- DMPA
- Dimyristoylphosphatidic acid.
[0037] Cetylphosphate or phosphoric acid ester homologues with R1 having between 16 and
24 carbon atoms.
[0038] The cationic lipids that can be used with this invention are amphipathic molecules
comprising an imino moiety in their polar head group, wherein such imino moiety is
substantially charged under physiological conditions. Therefore, in preferred embodiments
the pK value of this functional group is 7.5 or greater, in further preferred forms
the pK value of the imino group is 8.5 of higher. Imino moieties having such characteristics
can be imines itself or be part of larger functional groups, such as amidines, pyridines,
2-aminopyridines, heterocyclic nitrogen bases, guanido functions, isoureas, isothioureas
and the like.
The following structures (I1)...(I113) represent some specific examples of such imino
moieties,

wherein L represents the apolar region and optionally linker or spacer moieties of
the amphipathic lipid molecule. Examples of L can further be selected from the following
general structures (11) to (15),

wherein n or m represent an Integer between 0 and 29, R
1 and R
2 are independently from each other an alkyl, alkenyl or alkinyl moieties having between
8 and 24 carbon atoms and 0, 1 or 2 unsaturated bonds, A, B or D are independently
from each other absent, -CH2-, -CH=, =CH-, -O-, -NH-, -C(O)-O-, -O-C(O)-, -C(O)-NH-,
-NH-C(O)-, -O-C(O)-NH- or -NH-C(O)-O- and "sterol" can be a cholesterol attached via
its C3 atom.
[0039] The following Table 1 provides calculated or database values for the pK of the imino
containing moieties (I1) through to (I113). For quarternized imino moieties, a hypothetical
value of 99 was introduced to merely highlight this fact.
Table 1: pK values for the moieties I1-I113
moiety |
pK |
moiety |
pK |
imino |
amino |
ring N |
quanido N |
imino |
amino |
ring N |
guanido N |
I1 |
10,49 |
|
|
|
I51 |
10,31 |
-3,56 |
|
|
I2 |
7,23 |
|
|
|
I52 |
99 |
-3,47 |
|
|
I3 |
7,23 |
|
|
|
I53 |
7,73 |
|
|
|
I4 |
7,08 |
|
|
|
I54 |
10,62 |
-6,91 |
|
|
I5 |
8,41 |
|
|
|
I55 |
1,92 |
|
-5,58 |
|
I6 |
8,06 |
|
|
|
I56 |
10,63 |
-6,87 |
|
|
I7 |
7,87 |
|
|
|
I57 |
8,62 |
|
-7,89 |
|
I8 |
7,52 |
|
|
|
I58 |
11,03 |
-5,39 |
|
|
I9 |
11,58 |
|
|
|
I59 |
9,31 |
|
-4,75 |
|
I10 |
6,18 |
|
|
|
I60 |
8,67 |
-6,83 |
|
|
I11 |
6,61 |
|
|
|
I61 |
9,37 |
-3,47 |
|
|
I12 |
7,01 |
|
|
|
I62 |
10,66 |
-3,56 |
|
|
I13 |
n.d. |
|
|
|
I63 |
99 |
-3,47 |
|
|
I14 |
n.d. |
|
|
|
I64 |
7,19 |
-7,59 |
|
|
I15 |
5,62 |
|
|
|
I65 |
7,41 |
-2,85 |
|
|
I16 |
5,89 |
|
|
|
I66 |
8,37 |
-2,58 |
|
|
I17 |
0,63 |
|
|
|
I67 |
99 |
-2,7 |
|
|
I18 |
4,53 |
|
|
|
I68 |
13,72 |
|
|
-1,04 |
I19 |
6,22 |
|
|
|
I69 |
14,03 |
|
|
2,05 |
I20 |
6,99 |
|
|
|
I70 |
14,14 |
|
|
1,71 |
I21 |
5,36 |
|
|
|
I71 |
11,11 |
|
|
0,94 |
I22 |
5,11 |
|
|
|
I72 |
14,33 |
|
|
1,68 |
I23 |
5,85 |
|
|
|
I73 |
14,25 |
|
|
-0,71 |
I24 |
6,03 |
|
|
|
I74 |
14,73 |
|
|
-0,4 |
I25 |
12,06 |
-5 |
|
|
I75 |
13,9 |
|
|
-0,09 |
I26 |
12,37 |
-4,91 |
|
|
I76 |
14,04 |
|
|
-0,1 |
I27 |
12,37 |
-4,91 |
|
|
I77 |
14,18 |
|
|
-0,72 |
I28 |
12,37 |
-4,91 |
|
|
I78 |
14,67 |
|
|
-0,41 |
I29 |
12,37 |
-3,58 |
|
|
I79 |
14,18 |
|
|
-0,2 |
I30 |
12,37 |
-3,68 |
|
|
I80 |
14,33 |
|
|
-0,2 |
I31 |
12,37 |
-3,58 |
|
|
I81 |
9,85 |
|
|
-1,92 |
I32 |
12,06 |
-5 |
|
|
I82 |
10,17 |
|
|
-0,57 |
I33 |
12,68 |
-3,49 |
|
|
I83 |
11,41 |
|
|
-0,65 |
I34 |
12,66 |
-3,58 |
|
|
I84 |
99 |
-0,57 |
|
-13,15 |
I35 |
10,98 |
-5,43 |
|
|
I85 |
14,33 |
|
|
-0,98 |
I36 |
12,98 |
-4,25 |
|
|
I86 |
14,33 |
|
|
-0,57 |
I37 |
12,52 |
-3,12 |
|
|
I87 |
14,47 |
|
|
-0,68 |
I38 |
12,82 |
-4,01 |
|
|
I88 |
99 |
-0,57 |
|
-11,28 |
I39 |
13,13 |
-3,93 |
|
|
I89 |
10 |
-8,4 |
|
|
I40 |
13,12 |
-3,68 |
|
|
I90 |
8,69 |
-9,2 |
|
|
I41 |
12,37 |
-3,25 |
|
|
I91 |
10,93 |
-7,8 |
|
|
I42 |
12,68 |
-4,04 |
|
|
I92 |
10,08 |
-6,76 |
|
|
I43 |
12,99 |
-3,96 |
|
|
I93 |
10,32 |
-6,88 |
|
|
I44 |
12,98 |
-3,71 |
|
|
I94 |
3,51 |
|
|
|
I45 |
9,1 |
-4,89 |
|
|
I95 |
3,51 |
|
|
|
I46 |
9,37 |
-3,47 |
|
|
|
|
|
|
|
I47 |
10,66 |
-3,56 |
|
|
|
|
|
|
|
I48 |
99 |
-3,47 |
|
|
|
|
|
|
|
I49 |
8,47 |
-4,89 |
|
|
|
|
|
|
|
I50 |
9,02 |
-3,47 |
|
|
|
|
|
|
|
|
moiety |
pK |
moiety |
pK |
imino |
amino |
ring N |
guanido N |
imino |
amino |
ring N |
guanido N |
I100 |
8,98 |
-8,16 |
|
|
I107 |
12,49 |
-3,67 |
|
|
I101 |
8,85 |
-8,94 |
|
|
I108 |
12,49 |
-3,67 |
|
|
I102 |
9,9 |
-7,55 |
|
|
I109 |
12,36 |
-3,67 |
|
|
I103 |
9,69 |
-6,76 |
|
|
I110 |
12,8 |
-3,58 |
|
|
I104 |
9,29 |
-6,88 |
|
|
I111 |
12,78 |
-3,58 |
|
|
I105 |
8,82 |
-9,73 |
|
|
I112 |
10,62 |
-3,58 |
|
|
I106 |
10,58 |
-8,09 |
|
|
I113 |
10,27 |
-3,58 |
|
|
[0040] It becomes apparent from the data presented here, that most of the structures I1
- I113 comprise preferred imino moieties having a pK greater 7.5 or even greater than
8.5.
[0041] The pK values can be taken from public databases. Alternatively, there is expert
software in the public domain that can calculate, predict or extrapolate such values,
e.g., ACD/Labs v7 (by Advanced Chemistry Development, Ontario, Canada) or the like.
[0042] The imino moieties analyzed above are illustrating the teachings of this invention,
without limiting it to the specific examples. It is of course possible to change the
position of substituents, in particular when ring systems such as pyrrols or pyridins
are used for practicing this invention. It is also possible to replace the aliphatic
radicals used throughout I1 - I113 with aromatic residues or aryl moieties. The following
list of compounds (A1) through to (A21) provides a few examples that should further
illustrate such modifications, wherein L is defined as above.

[0043] The following Table 2 provides calculated or database values for the pK of the imino
containing moieties (A1) through to (A21)). For quarternized imino moieties, a hypothetical
value of 99 was introduced to merely highlight this fact.
Table 2; pK values for structures (A1) to (A21).
structure |
atom |
pK |
atom |
pK |
atom |
pK |
A1 |
ring |
7,29 |
out |
-7,16 |
|
|
A2 |
ring |
99 |
|
|
|
|
A3 |
ring |
99 |
out |
-6,76 |
|
|
A4 |
ring |
7,06 |
out |
-6,91 |
|
|
A5 |
ring |
4,74 |
|
|
|
|
A6 |
imino |
12,15 |
amidin |
-4,95 |
|
|
A7 |
imino |
3,07 |
amidin |
-12,14 |
ring |
99 |
A8 |
imino |
14,24 |
|
|
ring |
-1,31 |
A9 |
imino |
14,18 |
amidin |
-0,72 |
|
|
A10 |
imino |
12,52 |
amidin |
-3,12 |
|
|
A11 |
imino |
14,18 |
|
|
ring |
-1,27 |
A12 |
imino |
14,25 |
amidin |
-0,71 |
|
|
A13 |
imino |
12,31 |
amidin |
-5 |
|
|
A14 |
imino |
13,75 |
amidin |
-0,76 |
|
|
A15 |
imino |
10,98 |
amidin |
-5,43 |
|
|
A16 |
imino |
7,96 |
|
|
|
|
A17 |
imino |
9,44 |
amidin |
-8,39 |
|
|
A18 |
imino |
9,78 |
amidin |
0,95 |
|
|
A19 |
imino |
8,52 |
out |
-1,86 |
|
|
A20 |
imino |
11,97 |
amidin |
-6,3 |
|
|
A21 |
imino |
12,5 |
amidin |
-3,6 |
|
|
[0044] Again, many of the structures presented in the above Table 2 comprise preferred imino
moieties having a pK greater 7.5 or even greater than 8.5.
[0046] Some of these lipids have been presented earlier in the literature, for example the
guanido lipids in
WO91/16024,
WO97/43363,
WO98/05678,
WO01/55098,
WO2008/137758 (amino acid lipids), in
EP 0685234 (based on diacylglycerols),
US 5965434 (also based on diacylglycerols) or the pyridinium compounds in
US 6726894. Furthermore, as demonstrated in
WO29086558 or iluustrated in structure (15), it is also possible to use alternative lipid backbones,
e.g. those comprising a dioxolane linker segment while maintaining the functionality
of the respective head groups.
Lipid Mixtures and optional other lipids
[0047] The present invention discloses lipid mixtures comprising anionic and cationic amphiphiles;
wherein at least a portion of the cationic amphiphiles are imino lipids that are substantially
charged under physiological conditions, and wherein further at least a portion of
the anionic amphiphiles are carboxyl lipids or phosphate lipids.
[0048] A co-presence of both cationic lipids comprising a charged imino moiety in their
polar head group and anionic lipids comprising a carboxyl or phosphate function in
their polar head group is a central feature of this invention. That is, liposomes
or lipid assemblies that substantially lack one of these elements are not contemplated
in the practice of the present invention. The cationic imino lipids and the anionic
lipids can be present in different ratios; said ratios are characterized herein as
"charge ratios" (cation:anion ratios, C/A, see definitions) throughout this disclosure.
In many embodiments the C/A ratio is above 0.33, in preferred embodiments this ratio
is above 0.5 and in some embodiments the ratio is equal or above 0.66. In preferred
aspects of said embodiments the C/A is equal or below 3, in further preferred aspects
the ratio is equal or below 2 and in particularly preferred aspects the ratio is equal
or below 1.5.
[0049] In many aspects of said embodiments, the resulting lipid mixture has amphoteric character.
Imino lipids having a pK of more than 7.5, and even more so the preferred imino lipids
having a pK of 8.5 or higher are essentially charged under physiological conditions,
their actual charge becomes close and eventually identical with their nominal charge.
The typical pK of carboxyl lipids is between 4.5 and 6 and these lipids are therefore
also charged at physiological pH. Mixtures of both the imino and the carboxyl lipid
therefore have net negative charge at physiological pH whenever C/A is smaller than
1, the net charge become 0 at C/A = 1 and positive for C/A > 1.
[0050] At low pH, the anionic charge disappears around the pK of the carboxyl lipid, which
renders lipid mixtures having a C/A < 1 first neutral and then positively charged.
The charge reversal is characteristic for C/A < 1 and defines the amphoteric character.
Lipid mixtures having C/A = 1 or C/A > 1 also undergo a reduction of negative charges
at low pH, but no charge reversal. It should however be noted, that the relationship
between C/A and amphoteric character of the resulting lipid assemblies implies a statistic,
essentially equal distribution of the charged moieties across a given bilayer. That
means that the inner and outer leaflet of a membrane must have the same composition
of charged lipids to maintain the full validity of these calculations. This may not
always be the case as demonstrated in example 9 and liposomes of amphoteric character
can be formed even with lipid mixtures having C/A>1. Still, the correlations between
membrane composition and amphoteric character disclosed here give good guidance for
the selection of lipid mixtures.
[0051] The lipid mixtures may further comprise additional cationic, anionic, neutral/zwitterionic,
or functionalized lipids. Additional cationic lipids may be known components such
as DOTAP, DODAP, DC-Chol and the like. Additional anionic lipids may be selected from
negatively charged phospholipids, such as phosphatidylglycerol, phosphatidic acid,
dicetylphosphoric acid, cardiolipin and the like. Neutral or zwitterionic lipids are
cholesterol, phosphatidylethanolamine, phosphatidylcholine, sphingomyelin and the
like.
[0052] In preferred embodiments the neutral lipid is cholesterol. Further preferred are
variants wherein the lipid mixtures comprise between 10 mol% and 50 mol% of cholesterol,
even more preferred are variants with about 20 mol% and 40mol% cholesterol.
[0053] An important group of functionalized lipids are those comprising polymer extensions
such polyethylenglycol (PEG-lipids). Numerous PEGylated lipids are known in the state
of the art and essential differences can be found in (i) the size and degree of branching
of the PEG-chain, (ii) the type of the linker group between PEG and the membrane-inserted
portion of the molecule and (iii) the size of the hydrophobic, membrane inserted domain
of a PEGylated lipid. Further aspects of PEGylation are (iv) the density of the modification
in the lipid assemblies and (v) their orientation within such lipid assemblies.
[0054] In many embodiments of the aspect (i), the PEG fragment has a molecular weight between
500Da and 5,000Da, in more preferred embodiments, this fragment has a molecular weight
of about 700Da to 2,500Da and even more preferred are PEG fragments of about 2,000Da.
In many such embodiments, the PEG moiety is a single chain, non-branched PEG.
[0055] Typical embodiments of aspect (ii) are phosphoethanolamine moieties, diacylglycerols
moieties or the polar head groups of ceramides.
[0057] PEGylation at the same time provides colloidal stability to liposomes, in particular
to combinations of cationic liposomes with anionic nucleic acid cargoes as illustrated
in
US 6,287,591 but also impairs the cellular uptake and/or endosomal of liposomes (see
Shi,F. et al. (2002) In Biochem. J. 366:333-341). A transient PEGylation is now state of the art and satisfies the need for both
colloidal stability and activity of the particles.
[0058] A further aspect (iv) of PEGylation is the density of such modification, which should
be between 0.5 and 10mol% of the lipid mixture, in preferred embodiments the degree
of PEGylation is about 1 to 4mol%.
[0059] Since PEGylation of a given bilayer stabilizes the lamellar phase of the lipid assembly
and impairs lipid fusion associated with the formation of a hexagonal phase, the amount
of residual PEG moieties in a bilayer must be minimal. This can be achieved by titration
of the required amounts of PEGlipids. In some embodiments of aspect (v) the liposomes
are thus PEGylated on both membrane leaflets and the amount of PEG is minimized. In
another variant, PEG removal is as complete as possible. While this is easily achieved
for the PEG lipids associated with the outer bilayer, diffusion is essentially not
possible for PEG lipids attached to the interior of the lipid structure. It is thus
a preferred embodiment of the aspect (v) of this invention to provide liposomes comprising
charged imino and carboxyl or phosphate lipids further comprising PEGylated lipids,
wherein said PEGylated lipids are essentially situated on the outer surface.
[0060] Such liposomes can be characterized by the process of their production, wherein liposomes
are formed in a first step and this step also comprises encapsulation of cargo molecules.
The PEG-lipids are then inserted into the outer bilayer of the pre-fabricated liposomes
in a second step e.g. by addition of a micellar solution of PEGylated lipids to the
liposome suspension. In a specific embodiment of such process, the liposomes sequestering
nucleic acids are formed by mixing of a watery solution of nucleic acids with an alcoholic
solution of lipids. Liposomes entrapping nucleic acids are formed spontaneously and
the PEGylated lipids are added in a subsequent step.
[0061] With particular advantage, such process can be practiced with amphoteric liposomes,
as these liposomes already provide colloidal stability and the time element between
liposome formation and PEGylation is less critical. The preparation of amphoteric
liposomes encapsulating nucleic acids is disclosed in
WO 02/066012, its continuation
US2007/0252295 or further in
WO 07/107304.
[0062] In a preferred embodiment, amphoteric liposomes comprising imino and carboxyl or
phosphate lipids are PEGylated on their outer surface by providing the required amounts
of PEG lipid together with the neutralization buffer. For that, the PEG lipids can
be dissolved in the neutralization buffer. In another embodiment, said liposomes are
formed and neutralized and the PEG lipid is added separately after a time interval
of between 0.1s and several days. In yet another embodiment, the liposomes are formed
and neutralized and the liposome suspension is further concentrated and the PEG lipids
are added after the concentration of the materials. In yet another embodiment, the
liposomes are formed and neutralized and concentrated and the non-encapsulated nucleic
acid is removed and optionally the buffer for the liposome suspension is exchanged
and the PEG lipids are added afterwards. In summary, the PEG lipids can be added at
any time after the formation and closure of the liposomes.
[0063] In other embodiments the liposomes comprising imino and carboxyl or phosphate lipids
have pH-sensitive cationic character and are PEGylated on their outer surface by providing
the required amounts of PEG lipid upon formation and closure of said liposomes, following
the steps outline above. Since pH-sensitive liposomes are more prone to form aggregates
in the presence of nucleic acids, a rapid PEGylation is preferred and the PEG lipids
are added immediately upon closure of the liposomes, e.g. between 0.1s and 1min after
their production.
[0064] In contrast to the above methods yielding product liposomes that are essentially
PEGylated on their outer surface, presence of PEGylated lipids during the actual formation
of liposomes; that is before the nascent structures close, results in a different
product. Although structural data have not yet been obtained, the skilled artisan
would expect in such situation that a substantial amount of PEG moieties also resides
in the inner leaflet of the membrane. This is similar to the situation of the nucleic
acid cargo which also has access to both leaflet of the nascent liposome and of which
a substantial portion can be detected inside the liposomes, once these have closed.
Lipid Assemblies
[0065] The components mentioned herein can be assembled in various structures known to the
skilled artisan. These can be liposomes comprising one or a number of individual bilayers,
other supramolecular lipid assemblies or vesicles having a sizeable interior volume
that provides an aqueous phase. It also can be emulsion droplets or structures in
the form of lipoplex assemblies, the latter in many embodiments comprising electrostatic
complexes between the lipids and nucleic acids. In preferred embodiments, these structures
are liposomes or vesicles. In many embodiments, the liposomes or vesicles have a sizeable
aqueous interior. In many aspects of this invention, an active pharmaceutical ingredient
is complexated, encapsulated, sequestered or otherwise associated with the lipid assemblies.
Given the large number of useful imino and carboxyl or phosphate and additional lipids,
a very high number of potentially useful combinations does exist, thereby creating
a further need for selection and optimization amongst the many variants.
WO08/043575 gives specific guidance and provides a method for the optimization of complex lipid
assemblies, specifically for lipid bilayers, as discussed in further detail herein.
In brief, the teachings in
WO08/043575 demonstrate that amphoteric lipid mixtures form stable bilayers both under acidic
and neutral pH conditions, however, the bilayers formed from these lipid mixtures
can undergo phase transition and fusion at their isoelectric point, which typically
is at slightly acidic conditions.
WO08/043575 discloses the use of moderately sized or small lipid head groups for the charged
lipid components.
WO 08/043575 also teaches the use of large or bulky buffer ions to stabilize the lamellar phases
at low pH during the loading procedure, as well as the use of large or bulky buffer
ions to stabilize the lamellar phases at neutral pH during storage. In particular,
reference is made to pages 44 -57 of
WO 08/043575, which feature the essential elements cited above. The reference further discloses
the use of neutral lipids bearing a small head group such to maximize the fusion activity.
Typical neutral lipids for improved fusion are cholesterol or DOPE. Specific considerations
and optimization rules for the neutral lipids are further presented in
WO 09/047006, in particular on pages 63 through to 70.
[0066] Altogether,
WO 08/043575 or
WO 09/047006, together referred to as "the References" herein provide rational guidance for the
optimization of lipid assemblies. The References are not restricted to amphoteric
liposomes, but provide a comprehensive model for the structure-activity relationship
of lipid assemblies.
[0067] The present invention represents an advance in the art, as it provides optimized
methods of formulating liposomes that are capable of circumventing cellular binding,
interaction or competition with lipoproteins or other serum components. While the
methods taught by References provide the information for the necessary fusogenicity
of lipid assemblies, they are silent with respect to a prediction of the cellular
binding of the liposomes.
[0068] Thus, it is an object of the present invention to provide lipid assemblies, lipid
mixtures, and liposomes formulated by the method disclosed in the References in combination
with the unexpected properties observed when using an imino lipid that is substantially
charged under physiological conditions is used in combination with an anionic lipid
having a carboxyl or phosphate, that is, negatively charged moiety. Without wishing
to be bound by theory, the novel compositions formulated herein can better facilitate
lipoprotein-like cellular binding and uptake - a feature that is not known in the
art.
[0069] The lipid mixtures described herein can have amphoteric or pH-sensitive cationic
properties, both of which are generally conveyed towards the lipid assemblies or liposomes
by the lipids forming them. Charge properties can easily predicted as described in
WO 02/066012 for a symmetrical distribution of the lipids towards both leaflets of a lipid membrane
or bilayer. However, in some cases the lipid distribution of the outermost leaflet
may differ from other parts of the assembly. Macroscopically, lipid mixtures comprising
charged imino lipids in combination with carboxyl or phosphate lipids having C/A somewhat
larger than 1 may therefore still form liposomes having amphoteric character, as demonstrated
in example 9 and figure 1
[0070] For purposes of in silico optimization and prediction, lipid mixtures of the present
invention having a C/A<1 are considered amphoteric and can form lipid assemblies categorized
as "amphoter I" mixtures according to the classification of the References. In other
embodiments, lipid mixtures are used that have C/A=1 or C/A>1; these are pH-sensitive
cationic lipid mixtures, that is their charge is neutral or cationic at physiological
pH and becomes more cationic with descending pH. The pH-sensitive cationic mixtures
of said embodiments do no longer have an isoelectric point as it is the case with
their amphoteric counterparts. Still, the structure-activity relationships provided
in the References are applicable as these provide a universal understanding of the
phase behaviour of lipid assemblies in combination with solute and ions irrespective
of their charge.
[0071] For the sake of clarity, lipid mixtures of the present invention comprise one or
more cationic lipids having an imino group that is substantially charged at physiological
pH, further comprising one or more anionic lipids having a carboxyl or phosphate group,
optionally further comprising neutral lipids.
[0072] The amphoteric character of liposomes has further advantages. The negative surface
charge of such liposomes or lipid assemblies improves greatly the colloidal stability
of the liposomes in suspension. This is of particular importance in combinations with
polyanionic cargoes such as nucleic acids, which easily produce aggregates with cationic
liposomes.
[0074] Thus, in preferred embodiments, the liposomes of this invention have amphoteric character.
Within this group, it is of advantage to avoid very low percentages of the cationic
component to maintain effective loading of the particles with polyanionic cargos,
e.g. nucleic acids. In further preferred embodiments, the C/A is greater 0.5.
[0075] When applied systemically, that is, into the bloodstream, the liposomes undergo a
certain distribution within the body. Typical target sites are liver and spleen, but
also include the circulating phagocytic cells. The liposomes also contact the endothelia
surrounding the blood vessels and may transfect these cells. The accumulation of liposomes
in inflamed sites and tumors is of particular therapeutic relevance.
[0076] The skilled artisan would be aware of methods to direct the distribution of particles
towards one or the other site. It is well known that liposomes having a small diameter
of about 150 nm or less can penetrate the liver endothelium, thus gaining access to
the hepatocytes and other cells of the liver parenchyme. In aspects where targeting
of the liver hepatocytes is of therapeutic interest, the liposomes of this inventions
can be 150 nm or less in diameter, in preferred embodiments, the liposomes can be
less than 120 nm in diameter.
[0077] It is also well known that particles having a diameter of 100 nm or more are well
recognized by phagocytic cells. Therefore, in embodiments where macrophages or dendritic
cells constitute the target of interest, the liposomes of this invention are 120 nm
or larger. In some embodiments, these liposomes are 150 nm or larger. In other embodiments
these liposomes can be as a large as 250 nm, or up to 400 nm in size.
[0078] It has also been described that surface charge may influence the circulation time,
hence the biodistribution of liposomes and it is well established that PEGylation
reduces the surface charge and results in prolonged circulation of the liposomes.
Prolonged circulation is generally thought to maximize the distribution towards tumors.
Therefore, in aspects where tumors constitute the target of interest, the liposomes
of this invention have a small net surface charge and are characterized by a C/A of
between 0.67 and 1.5. In preferred embodiments for such applications the lipid mixtures
forming said liposomes have a C/A between 0.8 and 1.25. Also, the liposomes targeting
tumors are of small size. In preferred embodiments such liposomes are smaller than
150 nm, in further preferred embodiments the liposomes are smaller than 120 nm. In
some embodiments, the liposomes further comprise PEG lipids.
Cargoes for the liposomes of this invention
[0079] The liposomes or lipid assemblies of this invention can sequester or encapsulate
at least one active agent. Said active agent may comprise a drug. In some embodiments,
said active agent may comprise one or more nucleic acids. In preferred embodiments,
the active ingredient consists of nucleic acids.
[0080] Without being limited to such use, the liposomes or lipid assemblies described in
the present invention are well suited for use as carriers for nucleic acid-based drugs,
such as for example, oligonucleotides, polynucleotides and DNA plasmids. These drugs
are classified into nucleic acids that encode one or more specific sequences for proteins,
polypeptides or RNAs and into oligonucleotides that can specifically regulate protein
expression levels or affect the protein structure through,
inter alia, interference with splicing and artificial truncation.
[0081] In some embodiments of the present invention, therefore, the nucleic acid-based therapeutic
may comprise a nucleic acid that is capable of being transcribed in a vertebrate cell
into one or more RNAs, which RNAs may be mRNAs, shRNAs, miRNAs or ribozymes, wherein
such mRNAs code for one or more proteins or polypeptides. Such nucleic acid therapeutics
may be circular DNA plasmids, linear DNA constructs, like MIDGE vectors (Minimalistic
Immunogenically Defined Gene Expression) as disclosed in
WO 98/21322 or
DE 19753182, or mRNAs ready for translation (e.g.,
EP 1392341).
[0082] In other embodiments of the invention, oligonucleotides may be used that can target
existing intracellular nucleic acids or proteins. Said nucleic acids may code for
a specific gene, such that said oligonucleotide is adapted to attenuate or modulate
transcription, modify the processing of the transcript or otherwise interfere with
the expression of the protein. The term "target nucleic acid" encompasses DNA encoding
a specific gene, as well as all RNAs derived from such DNA, being pre-mRNA or mRNA.
A specific hybridisation between the target nucleic acid and one or more oligonucleotides
directed against such sequences may result in an inhibition or modulation of protein
expression. To achieve such specific targeting, the oligonucleotide should suitably
comprise a continuous stretch of nucleotides that is substantially complementary to
the sequence of the target nucleic acid.
[0083] Oligonucleotides fulfilling the abovementioned criteria may be built with a number
of different chemistries and topologies. The oligonucleotides may comprise naturally
occurring or modified nucleosides comprising, but not limited to, DNA, RNA, locked
nucleic acids (LNA's), unlocked nucleic acids (UNA's), 2'O-methyl RNA (2'Ome), 2'
O-methoxyethyl RNA (2'MOE) in their phosphate or phosphothioate forms or Morpholinos
or peptide nucleic acids (PNA's). Oligonucleotides may be single stranded or double
stranded.
[0084] Oligonucleotides are polyanionic structures having 8-60 charges. In most cases, these
structures are polymers comprising nucleotides. The present invention is not limited
to a particular mechanism of action of the oligonucleotides and an understanding of
the mechanism is not necessary to practice the present invention. The mechanisms of
action of oligonucleotides may vary and might comprise inter alia effects on splicing,
transcription, nuclear-cytoplasmic transport and translation.
[0085] In a preferred embodiment of the invention, single stranded oligonucleotides may
be used, including, but not limited to DNA-based oligonucleotides, locked nucleic
acids, 2'-modified oligonucleotides and others, commonly known as antisense oligonucleotides.
Backbone or base or sugar modifications may include, but are not limited to, Phosphothioate
DNA (PTO), 2'O-methyl RNA (2'Ome), 2'Fluoro RNA (2'F), 2' O- methoxyethyl-RNA (2'MOE),
peptide nucleic acids (PNA), N3'-P5' phosphoamidates (NP), 2'fluoroarabino nucleic
acids (FANA), locked nucleic acids (LNA), unlocked nucleic acids (UNA), Morpholine
phosphoamidate (Morpholino), Cyclohexene nucleic acid (CeNA), tricyclo-DNA (tcDNA)
and others. Moreover, mixed chemistries are known in the art, being constructed from
more than a single nucleotide species as copolymers, block-copolymers or gapmers or
in other arrangements.
[0086] In addition to the aforementioned oligonucleotides, protein expression can also be
inhibited using double stranded RNA molecules containing the complementary sequence
motifs. Such RNA molecules are known as siRNA molecules in the art (e.g.,
WO 99/32619 or
WO 02/055693). Other siRNAs comprise single stranded siRNAs or double stranded siRNAs having one
non-continuous strand. Again, various chemistries were adapted to this class of oligonucleotides.
Also, DNA / RNA hybrid systems are known in the art. Other varieties of siRNA's comprise
three-stranded constructs wherein two smaller strand hydridize to one common longer
strand, the so-called meroduplex or sisiRNA's having nicks or gaps in their architecture.
[0087] In another embodiment of the present invention, decoy oligonucleotides can be used.
These double stranded DNA molecules and chemical modifications thereof do not target
nucleic acids but transcription factors. This means that decoy oligonucleotides bind
sequence-specific DNA-binding proteins and interfere with the transcription (e.g.,
Cho-Chung, et al., in Curr. Opin. Mol. Ther., 1999).
[0088] In a further embodiment of the invention, oligonucleotides that may influence transcription
by hybridizing under physiological conditions to the promoter region of a gene may
be used. Again, various chemistries may adapt to this class of oligonucleotides.
[0089] In a still further alternative of the invention, DNAzymes may be used. DNAzymes are
single-stranded oligonucleotides and chemical modifications therof with enzymatic
activity. Typical DNAzymes, known as the "10-23" model, are capable of cleaving single-stranded
RNA at specific sites under physiological conditions. The 10-23 model of DNAzymes
has a catalytic domain of 15 highly conserved deoxyribonucleotides, flanked by 2 substrate-recognition
domains complementary to a target sequence on the RNA. Cleavage of the target mRNAs
may result in their destruction and the DNAzymes recycle and cleave multiple substrates.
[0090] In yet another embodiment of the invention, ribozymes can be used. Ribozymes are
single-stranded oligoribonucleotides and chemical modifications thereof with enzymatic
activity. They can be operationally divided into two components, a conserved stem-loop
structure forming the catalytic core and flanking sequences which are reverse complementary
to sequences surrounding the target site in a given RNA transcript. Flanking sequences
may confer specificity and may generally constitute 14-16 nt in total, extending on
both sides of the target site selected.
[0091] In other embodiments of the invention, aptamers may be used to target proteins. Aptamers
are macromolecules composed of nucleic acids, such as RNA or DNA, and chemical modifications
thereof that bind tightly to a specific molecular target and are typically 15-60 nt
long. The chain of nucleotides may form intramolecular interactions that fold the
molecule into a complex three-dimensional shape. The shape of the aptamer allows it
to bind tightly against the surface of its target molecule including but not limited
to acidic proteins, basic proteins, membrane proteins, transcription factors and enzymes.
Binding of aptamer molecules may influence the function of a target molecule.
[0092] All of the above-mentioned oligonucleotides may vary in length between as little
as 5 or 10, preferably 15 and even more preferably 18, and as many as 50 or 60, preferably
30 and more preferably 25, nucleotides per strand. More specifically, the oligonucleotides
may be antisense oligonucleotides of 8 to 50 nucleotides length that catalyze RNAseH
mediated degradation of their target sequence or block translation or re-direct splicing
or act as antagomirs; they may be siRNAs of 15 to 30 basepairs length; or they may
further represent decoy oligonucleotides of 15 to 30 basepairs length. Alternatively,
they can be complementary oligonucleotides influencing the transcription of genomic
DNA of 15 to 30 nucleotides length; they might further represent DNAzymes of 25 to
50 nucleotides length or ribozymes of 25 to 50 nucleotides length or aptamers of 15
to 60 nucleotides length. Such subclasses of oligonucleotides are often functionally
defined and can be identical or different or share some, but not all, features of
their chemical nature or architecture without substantially affecting the teachings
of this invention. The fit between the oligonucleotide and the target sequence is
preferably perfect with each base of the oligonucleotide forming a base pair with
its complementary base on the target nucleic acid over a continuous stretch of the
abovementioned number of oligonucleotides. The pair of sequences may contain one or
more mismatches within the said continuous stretch of base pairs, although this is
less preferred. In general the type and chemical composition of such nucleic acids
is of little impact for the performance of the inventive liposomes as vehicles be
it in vivo or
in vitro, and the skilled artisan may find other types of oligonucleotides or nucleic acids
suitable for combination with the amphoteric liposomes of the invention.
[0093] In certain aspects and as demonstrated herein, the liposomes according to the present
invention are useful to transfect cells
in vitro, in vivo or
ex vivo.
Specific Embodiments
Cholesterol based lipids
[0094] To illustrate the teachings of this invention, cationic derivatives of cholesterol
comprising guanido moieties (charged imino group, CHOL-GUA), imidazol moieties (non-charged
imino group, CHIM) or dimethylamino or trimethyl ammonium moieties (non-imino, but
charged groups, DC-CHOL or TC-CHOL) were systematically combined with different anionic
lipids.

[0095] The anionic lipids used were CHEMS (cholesterol as hydrophobic portion, carboxylic
acid charge group), DMGS or DOGS (diacylglycerols hydrophobic portion, carboxylic
acid charge group) or DOPA (diacyl glycerol as hydrophobic portion, phosphate ester
charge group). For most of the cation/anion combinations, a series of 8 binary mixtures
having C/A ratios between 0.33 and 2 was prepared, combinations of the cationic lipids
with DOPA were tested at C/A 0.75 and 1 . Cholesterol was added to all lipid mixtures
to constitute between 20 and 40mol%, as indicated.
[0096] All liposomes were loaded with PLK-1 siRNA, an oligonucleotide capable of inhibiting
the production of the cell cycle kinase PLK-1 and successful transfection was measured
by inhibition of cell viability of the test cells (see also
Haupenthal et al., Int. J. Cancer (2007), 121:206-210. Unspecific inhibition of the cell viability, that is , cytotoxic effects, were monitored
by control preparations comprising a non-targeting siRNA of the same general composition
and in the same amounts.
[0097] The transfection of cells was followed in regular cell culture medium or with the
additional presence of 10% mouse serum, a potent inhibitor of cellular uptake for
many amphoteric liposomes. The efficacy of transfection is expressed as IC50, the
concentration needed to achieve a 50% inhibition of the cell viability.
[0098] The ratio between the IC50 in regular medium and the IC50 upon addition of mouse
serum is used as a metric for the inhibition of the cellular uptake by mouse serum.
This ratio is 5 or higher for liposomes without specific targeting properties. It
is 5 or lower for the liposomes of this invention; that is liposomes comprising charged
imino groups in combination with negatively charged lipids.
[0099] As further demonstrated in examples 14, the best serum-resistant transfection of
HeLa cells can be achieved by combinations of CHOLGUA with the carboxyl lipid DOGS.
Particular good results were obtained in the presence of less than 40% cholesterol
and for mixtures having a C/A of between 0,5 and 1,5. If all other components such
as DOGS or cholesterol were kept constant and the GUA head group was exchanged against
a dimethylamine as in DC- CHOL, the liposomes are still active in the absence, but
no longer in the presence of mouse serum. The same can be observed for combinations
of CHIM and DMGS.
[0100] Combinations of cholesterol-based cationic lipids with the phosphate lipid DOPA resemble
the findings in that the best activities was observed for the imino lipid CHOLGUA.
Also, serum-resistant transfection of CHOLGUA:DOPA liposomes could be observed, although
with substantial inhibition compared to the absence of serum. Combinations for DOPA
with CHIM or DC-CHOL did not result in any transfection in the presence of serum.
DACA-based lipids
[0102] Wherein the DACA moiety was obtained by addition of oleyliodide to oleic acid as
described in the example 10 and the resulting compound is:

[0103] Out of the cationic lipids, GUADACA, MPDACA or BADACA have a charged imino moiety
in their polar head groups. The head group of PDACA is essentially uncharged due to
the low pK of the pyridine moiety (calculated pK is 5,9) while the methylated variant
results in the formation of the constantly charged pyridinium compound MPDACA. ADACA
has a high enough pK of about 9, but lacks the imino component. However, small amounts
of the respective enamine may form from that component as the amino group is situated
in □-position from the amide, allowing mesomeric stabilization of the imine form.
[0104] Combinations with the anionic lipids CHEMS, DMGS, DOGS and DOPA were prepared as
described above for the cholesterol based lipids and similar series of different liposomes
having various C/A ratios of between 0.33 and 2 (or 0.75 and 1 for the phosphate lipid)
were produced.
[0105] Also, the liposomes were loaded with siRNA targeting PLK-1 or an unrelated sequence
and the transfection properties were tested on HeLa cells in the presence or absence
of mouse serum.
[0106] As further demonstrated in examples 14 and 15, serum-resistant transfection of HeLa
cells can be achieved by combinations of GUADACA or MPDACA with carboxyl lipids or
phosphate lipids. In addition, these lipids yield very efficient transfection of PLK-1
siRNA also in the absence of serum. This implies that there is no activation of the
liposomes with serum components as recently described for liposomes having a dimethylamino
head group (
Akinc et al., Mol. Ther. (2010) electronic publication on May11th, ahead of print.
DOI: 10.1038/mt.2010.85). Very high levels of carrier activity are also observed for C/A ratios between 0.5
and 1.5 for the combinations with the carboxylic lipids and for C/A 0.75 or 1 for
the phosphate lipids. In many of these cases, formulations have amphoteric charge
properties.
[0107] A lack of methylation of the pyridinium compound MPDACA gives the related PDACA.
While still bearing an imine function, this function is no longer charged as in MPDACA;
PDACA is also not active as a cationic lipid for transfection purposes. In yet another
variant the aromatic ring of the head group was kept, but the charged imine was then
presented as part of an extra-annular aminide group. This compound was found active
as a lipid for transfection, e.g. in combinations with CHEMS or DMGS where it also
resulted in serum-resistant transfection.
[0108] Additional lipids based on Dialkylcarboxylic Acids.
[0109] Similar findings have been made using the pyridinium lipid SAINT-18 as described
in
US 6726894 (structure 31).

[0110] SAINT-18 was combined with various lipid anions, such as CHEMS, DMGS or DOGS. The
ratios of the cationic and anionic lipids were varied in a systematic way and the
resulting binary mixtures optionally were further supplied with 20 or 40 mol% cholesterol.
The individual lipid mixtures were transformed into liposomes and used for the encapsulation
of an active and control siRNA. When tested on HeLa cells in the presence of normal
cell culture medium, efficient and specific inhibition of the cell viability was observed
for numerous of the tested formulations, as demonstrated in Example 8. However, none
of the liposomes having a C/A>=1 yielded transfection of cells in the presence of
mouse serum. In stark contrast, a great many of the amphoteric formulations resisted
the serum challenge and did transfect the cells effectively. Furthermore, the effect
was specific to the PLK-1 siRNA and much higher concentrations of liposomes loaded
with an unrelated siRNA (SCR) were needed to unspecifically inhibit cell proliferation.
The best results were obtained by using SAINT18 in combination with DMGS. Liposomes
comprising SAINT-18 and DMGS, further characterized by C/A<1 are therefore within
the purview of this invention.
Amino acid based lipids
[0111] To further illustrate the teachings of this invention, the cationic guanido lipid
PONA (palmitoyl-oleoyl-nor-arginine, structure 21) was combined with various lipid
anions such as CHEMS or DMGS. The ratios of the cationic and anionic lipids were varied
in a systematic way and the resulting binary mixtures optionally were further supplied
with 20 mol% cholesterol. The individual lipid mixtures were transformed into liposomes
and used for the encapsulation of an active and control siRNA. When tested on HeLa
cells, efficient and specific inhibition of the cell viability was observed for most
of the tested formulations, as demonstrated in Example 5. The activity was not or
only marginally affected by the presence of human or mouse serum.
[0113] Again, the ratios between the anionic and cationic lipid components were systematically
varied and 20% cholesterol was present in all lipid mixtures. The material was formulated
into liposomes and used for the encapsulation of active and control siRNA. When tested
on HeLa cells, efficient and specific inhibition of the cell viability was observed
for all formulations comprising a molar excess of the cationic lipids. For mixtures
comprising higher molar amounts of the anionic lipid CHEMS, the best activity was
observed in combinations with PONA, while PONamine: CHEMS combinations were only effective
in some cases. The PONammonium:CHEMS combinations were not effective when an excess
of the anionic lipid was used.
[0114] Moreover, out of the mixtures comprising an excess of the anionic lipid CHEMS, the
transfection activity of the PONA:CHEMS combinations was only marginally affected
by the presence of human or mouse serum, while the activity of PONamine:CHEMS combinations
was completed suppressed in the presence of mouse serum. The PONammonium formulations
remained inactive in the presence of sera.
[0115] Combinations of PONA, PONamine or PONammonium with the phosphate lipids DOPA were
also tested as further described in example 15. Both PONA and PONamine, but not PONammonium
resulted in serum-resistant transfection of HeLa cells.
[0116] The combined data support a preferred uptake of lipid combinations comprising guanido
lipids in combination with negatively charged, e.g. carboxyl or phosphate lipids.
This may relate to the mechanistic considerations made further below. The constant
and high activity of the formulations having an excess of the cationic lipid component
may be due to electrostatic interaction between these particles and the cell surface,
which however is unspecific. In line with this view is the fact that the activity
of the cationic formulations did not depend on either the nature of the anionic or
the cationic lipid.
[0117] In further experiments, the guanido lipid PONA was combined with CHEMS, DMGS or DOGS.
Again, a systematic variation of the ratios of both the anionic and cationic lipid
compound in the respective binary mixtures was performed and the formulations were
further supplied with 0, 20 or 40 mol% of cholesterol. When tested as above, the great
majority of the formulations were active in inhibiting the cell proliferation of HeLa
cells with an IC
50 being lower than 6 nM (see Example 7). A comparison between the concentrations needed
for the efficacy of the active and inactive siRNA, however, revealed substantial differences
between the formulations. A measure for such comparison is the ratio between the IC
50 values for both siRNA's, here expressed as SCR/PLK ratio. Only selected formulations
reach values significantly higher than 5. Even more preferred formulations have SCR/PLK>=10.
All of these preferred formulations can be characterized by their ratio between the
cationic and anionic lipid component, which is lower than 1.
[0118] This invention identifies specific lipid head group chemistry as critical for the
uptake into certain cells in the presence of otherwise inhibitory sera. With preference,
amphoteric combinations of anionic lipids comprising carboxyl groups and cationic
lipids comprising charged imino moieties result In the desired properties. In contrast,
cationic formulations comprising the same lipids do not depend on a specific head
group chemistry and are less tolerated by cells.
Lipoprotein Binding
[0119] The lipoproteins competing with the transfection of liposomes comprise a variety
of structures, according to their density. These are known as chylomicrons, VLDL,
LDL, IDL or HDL particles. In the endogenous pathway, chylomicrons are synthesized
in the epithelial lining of the small intestine and are assembled using ApoB-48, a
shorter variant of the ApoB gene product. Further exchange of lipoproteins with HDL
particles leads to transfer of ApoC-II and ApoE to the chylomicron particle, the first
mediating the activation of lipoprotein lipase, an enzyme needed for the release of
lipids from the particle. The hydrolyzed chylomicrons form so called remnants which
are taken up mainly in the liver via recognition of their ApoE portion. The synthesis,
maturation, use and recycling of VLDL particles follows the very same pathway, but
starts in the liver and is using the ApoB-100 protein as its structure forming unit.
Again, ApoE mediates the eventual uptake and recycling of the VLDL-remnants, the so-called
IDL particles. (see also http://en.wikipedia.org/wiki/Lipoprotein)
[0120] ApoE shares structural homology to the apolipoproteins A and C in that they all comprise
amphipathic tandem repeats of 11 amino acids. Crystallographic data confirm the existence
of extended amphipathic helical structures for ApoA-I and and ApoE fragment and also
reveal a mixed charge organization on the polar face of these helices. These data
are publicly available from the RCSB Protein Data Bank (available at www.rcsb.org/pdb/home/home.do)
and entry 1AV1.pdb gives the protein structure of ApoA-I. The amino acids 129 to 166
of 1lpe.pdb represent the LDL-receptor binding fragment of ApoE. In contrast to their
overall similarity, the three apolipoproteins display specific deviations when their
amino acid composition is analyzed. In ApoE, arginine is the prevailing cationic amino
acid in the tandem repeats. In contrast, ApoA has equal amounts of lysine and arginine,
while ApoC has an excess of lysine residues.
Table 3: Analysis of the amino acid composition in tandem repeats of related apolipoproteins.
Sequence data were obtained from Swiss-Protavailable at www.expasy.ch/sprot/sprot-top.html).
Sequence |
ApoAI |
ApoE |
ApoC-II |
SwissProt Entry |
P02647 |
P02649 |
P02655 |
Endpoints |
68-267 |
80-255 |
23-101 |
lenght |
199 |
175 |
78 |
IP |
5,55 |
9,16 |
4,66 |
# of lysine |
18 |
8 |
6 |
# of arginine |
14 |
25 |
1 |
# of histidine |
5 |
1 |
0 |
# of aspartic acid |
10 |
8 |
4 |
# of glutamic acid |
28 |
22 |
7 |
|
ApoAI |
ApoE |
ApoC-II |
Lysine (%) |
9% |
5% |
8% |
Arginine (%) |
7% |
14% |
1% |
Histidine (%) |
3% |
1% |
0% |
Aspartic acid (%) |
5% |
5% |
5% |
Glutamic acid (%) |
14% |
13% |
9% |
[0121] In summary, the polar surface of natural lipoproteins is covered with apolipoproteins,
of which ApoE is a common binding motif for the cellular uptake of these particles.
The water-exposed portions of ApoE represent a mosaic of anionic and cationic charges,
wherein the anionic charges are created from the free carboxyl termini of aspartic
and glutamic acid residues. The cationic charges comprise a mixture of amino and guanido
groups with a very few imidazols being present.
[0122] In order to emulate the recognition pattern of the ApoE binding cassette on the surface
of liposomes, different alternatives can be followed. It is possible to synthesize
ApoE peptide fragment and graft such peptides on the surface of liposomes. This has
been demonstrated by
Mims et al., J Biol. Chem. 269, 20539 (1994);
Rensen et al., Mol Pharmacol. 52, 445 (1997);
Rensen et al., J. Lipid Res. 38, 1070 (1997);
Sauer et al., Biochemistry 44, 2021 (2005) or
Versluis et al., J Pharmacol. Exp. Ther 289, 1 (1999). However, the high cost associated with peptide synthesis and derivatization call
for alternative approaches,
[0123] A direct presentation of the required charged moieties using mixtures of different
charged lipids, potentially further comprising neutral lipids would yield a much simpler
structure and eliminate the needs for costly peptide production and derivatization.
A considerable challenge of such an approach is the planar diffusion of the charged
groups within the lipid bilayer; it was heretofore unclear whether the affinity of
such a less organized assembly would effectively compete with the affinities provided
by the authentic lipoproteins. Moreover, the oppositely charged lipid headgroups may
form salt bridges with each other, white only few hydrogen bonds between functional
groups are detected in the binding cassette of lipoproteins, e.g. ApoE. This may explain
the activity of imino:phosphate lipid combinations such as GUADACA:DOPA or MPDACA:DOPA.
While DOPA provides two negative charges under physiological conditions, steric hindrance
disables the formation of a salt from one DOPA and two GUADACA lipids. As such, in
these membranes the negatively charged salt between DOPA and GUADACA must co-exist
with free GUADACA molecules, thereby facilitating the simultaneous presence of separated
anionic and cationic elements in a common lipid assembly.
[0124] The theory above is mentioned without limiting the findings of this invention. Without
wishing to be bound to this particular theory, one can assume that the combinations
of charged imino lipids with negatively charged carboxyl or phosphate lipids emulate
the surface properties of lipoproteins covered with ApoE. The particles can of course
be used, developed and optimized without such knowledge. The theoretical background
may however be helpful to understand guiding principles or applicability of the vectors
described in the various embodiments of this invention.
[0125] It is for example known, that lipoprotein receptors have different expression profiles
in various cell types and such knowledge can be used to assess target cell populations
for the liposomes of this invention.
[0127] The liposomes of this invention are thus specifically suited for applications in
the field of oncology, but also for transfection of specific lung cells. While tumors
are accessible from systemic circulation through the EPR-effect (enhanced permeability
and retention), that is via leaky tumor vasculature, the bronchoepithelial cells can
be targeted also from the airways.
[0128] In a specific embodiment of this invention, aerosols from liposomes comprising charged
imino and carboxyl or phosphate lipids are thus used for inhaled dosage forms for
the targeting of lung cells, in particular bronchoepithelial cells.
Figure Legends
[0129] Figures 1- 6 display the results of the screening experiment described in example
14. The nature of the cationic lipids is indicated in the smaller figures and other
legends and axis are similar for all display items and are given in the separate smaller
figure below. The double bars denote liposomes with 20% cholesterol (left bar) and
40% cholesterol (right bar), respectively.
[0130] Bars represent the IC50 values for the respective liposome/siRNA combinations under
the experimental conditions for each figure, that is, either in the presence of absence
of mouse serum. These IC50 values denote the concentrations needed for a half-maximal
inhibition of the cell growth and are given in nM. The maximum concentrations of the
test items were 40 and 36nM for the absence or presence of mouse serum, respectively.
[0131] The order of the test items is as follows:
- Figure 1
- the anionic lipid is CHEMS - no addition of mouse serum
- Figure 2
- the anionic lipid is CHEMS + addition of mouse serum
- Figure 3
- the anionic lipid is DMGS - no addition of mouse serum
- Figure 4
- the anionic lipid is DMGS + addition of mouse serum
- Figure 5
- the anionic lipid is DOGS - no addition of mouse serum
- Figure 6
- the anionic lipid is DOGS + addition of mouse serum
Examples
[0132] The teachings of this invention may be better understood with the consideration of
the following examples. However, these examples should by no means limit the teachings
of this invention.
Example 1 - Liposome production, characterization and encapsulation of siRNA
[0133] Liposomes were prepared using methods as disclosed in
WO07/107304. More specifically, lipids were dissolved in isopropanol and liposomes were produced
by adding siRNA solution in NaAc 20 mM, Sucrose 300 mM, pH 4.0 (pH adjusted with HAc)
to the alcoholic lipid mix, resulting in a final alcohol concentration of 30%. The
formed liposomal suspensions were shifted to pH 7.5 with twice the volume of Na
2HPO
4 136 mM, NaCl 100 mM (pH 9), resulting in a final lipid concentration of 3 mM and
a final isopropanol concentration of 10%.
[0134] Liposomes were characterized with respect to their particle size using dynamic light
scattering (MALVERN 3000HSA).
[0136] Control siRNA (SCR): 21 mer from the same source.
Example 2 - General Cell Culture and Proliferation Assay
[0137] HeLa cells were obtained from DSMZ (German Collection of Micro Organism and Cell
Cultures) and maintained in DMEM (Gibco-Invitrogen) and supplemented with 10% FCS.
The cells were plated at a density of 2.5×10
4 cells/ml and cultivated in 100 µl medium at 37 °C under 5% CO
2. After 16 h, the liposomes containing siRNA were diluted and 10 µl were added to
the cells to yield final concentrations between 0.4 to 100 nM Plk1 or scrambled siRNA;
10µl dilution buffer were also added to untreated cells and into wells without cells.
Cell culture dishes were incubated for 72 h at 37 °C under 5% CO
2.
[0138] Cell proliferation/viability was determined by using the CellTiter-Blue Cell Viability
assay (Promega, US) according to the instructions of the supplier.
Example 3 - Inhibition of transfection by sera
[0139] Liposomes from DODAP:DMGS:Cholesterol (24:36:40 mol%) were loaded with active and
control siRNA as above and 25 µl of the liposomes were incubated with 75 µl sera from
different species (SIGMA-Aldrich) for 30 min. Following that, liposomes were added
to the cells, incubation was continued for 72 h and cell viability was determined
as above.
[0140] When incubated without serum, administration of the active siRNA results in a strong
inhibition of cell proliferation. As demonstrated in the Table 7 below, this process
is inhibited by the addition of sera.
Table 7: Inhibition of cellular transfection by sera of different origin.
siRNA type |
siRNA concentration |
Serum |
Cell viability (%) |
PLK1 |
50 nM |
no |
7 |
PLK1 |
50 nM |
Human |
98 |
PLK1 |
50 nM |
Hamster |
80 |
PLK1 |
50 nM |
Rat |
108 |
PLK1 |
50 nM |
Mouse |
102 |
No |
No |
No |
100 |
Example 4 - Inhibition is lipoprotein dependent
[0141] Liposomes as in Example 3 were incubated with human serum devoid of certain complement
factors or lipoproteins (SIGMA-Aldrich) as above and analyzed for their ability to
mediate the RNAi effect on HeLa cells.
[0142] As demonstrated in Table 8, the efficacy of transfection can be restored by a depletion
of lipoproteins. Removal of complement factors was ineffective.
Table 8: Restoration of cellular transfection in sera being deficient of various factors.
siRNA type |
siRNA concentration |
Serum |
Cell viability (%) |
PLK1 |
50 nM |
no |
7 |
PLK1 |
50 nM |
Human, complete |
98 |
PLK1 |
50 nM |
Human, no C3 complement factor |
91 |
PLK1 |
50 nM |
Human, no C9 complement factor |
98 |
PLK1 |
50 nM |
Human, lipoprotein deficient |
18 |
No |
No |
No |
100 |
Example 5 - Serum resistant transfection using a guanido lipid
[0143] A series of liposomes was constructed from PONA:Anionic Lipid:Cholesterol (x:y:20
mol%) and loaded with active and control siRNA as in Example 1. Within that series,
the ratio between the cationic component PONA and the anionic lipids CHEMS or DMGS
was systematically varied between 0.33 and 2 as indicated in the table. Liposomes
having a ratio of the cationic : anionic lipid of 1 or greater were further supplied
with 2mol% DMPE-PEG2000 (Nippon Oils and Fats) to avoid aggregation of the particles.
This modification is indicated by a "+" in the table. Control reactions with particles
having C/A<1 did not reveal a change of transfection properties in the presence or
absence of PEG lipids.
[0144] HeLa cells were grown and maintained as in Example 2 and sera of human or mice origin
(SIGMA-Aldrich) was added directly to the cells for 120 min. Following that, the liposomes
were added to the cells in concentrations between 50 pM and 50 nM, incubation was
continued for 72 h and cell viability was determined as above. The efficacy of transfection
is expressed here as IC
50, the concentration needed to inhibited cell proliferation by 50%. Low IC50 values
therefore represent highly effective transfection.
[0145] It becomes apparent from the results In the Table 9, that the addition of sera only
marginally affects the transfection of siRNA mediated by the liposomes of the example.
Some inhibition is still observed for liposomes from PONA:CHEMS comprising low amounts
of the anionic lipid (ratios 0.33 and 0.5, particular strong inhibition with mouse
serum).
Table 9: Efficacy of transfection of liposomes comprising guanido moieties in the
presence of sera.
|
CHEMS |
Ratio cationic/anionic lipid |
0,33 |
0,50 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
No Serum |
38,54 |
1,21 |
0,40 |
0,56 |
1,83 |
1,61 |
0,70 |
1,42 |
Human Serum |
199,00 |
2,10 |
0,62 |
1,13 |
2,16 |
1,92 |
1,70 |
1,83 |
Mouse Serum |
199,00 |
50,00 |
1,56 |
1,94 |
2,47 |
1,90 |
0,76 |
1,44 |
|
|
DMGS |
No Serum |
|
|
0,23 |
0,54 |
0,01 |
0,01 |
|
|
Human Serum |
|
|
1,50 |
2,39 |
2,88 |
2,21 |
|
|
Mouse Serum |
|
|
0,67 |
0,69 |
1,41 |
1,81 |
|
|
Example 6 - Criticality of the guanido head group
[0146] Series of liposomes having systematically varied ratios between the cationic and
anionic lipid components were produced and loaded with siRNA as in Example 5. The
cationic lipid components were PONA, PONamine and PONammonium, the anionic lipid was
CHEMS and the cholesterol content was fixed to 20 mol%. Liposomes having a ratio of
the cationic : anionic lipid of 1 or greater were further supplied with 2mol% DMPE-PEG2000
(Nippon Oils and Fats) to avoid aggregation of the particles. This modification is
indicated by a "+" in the table.
[0147] HeLa cells were grown and maintained as in Example 2 and sera of human or mice origin
(SIGMA-Aldrich) was added directly to the cells for 120 min. Following that, the liposomes
were added to the cells in concentrations between 50 pM and 50 nM, incubation was
continued for 72 h and cell viability was determined as above. The efficacy of transfection
is expressed here as IC
50 as in Example 5.
[0148] It becomes apparent from the data in Table 10, that only PONA, but neither PONamine
and even less so PONammonium mediates the transfection of HeLa cells in the presence
of serum. This is most striking in the case of mouse serum, which inhibits the transfection
more aggressively. An excess of the cationic lipid components to some extent compensate
the serum mediated loss of activity, but may be due to unspecific electrostatic adsorption
of these liposomes to the cells.
Table 10: Criticality of the guanido head group for the serum resistant transfection
of cells.
|
PONA |
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
no serum |
42,9 |
1,8 |
0,6 |
1,0 |
4,1 |
5,4 |
2,4 |
6,8 |
human serum |
80,0 |
2,5 |
2,2 |
2,0 |
1,8 |
2,8 |
6,2 |
5,2 |
mouse serum |
80,0 |
31,1 |
55,0 |
5,7 |
2,1 |
5,3 |
8,1 |
7,5 |
|
|
|
|
|
|
|
|
|
|
PONamine |
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
no serum |
3,1 |
65,0 |
7,5 |
100,0 |
3,0 |
5,2 |
3,0 |
2,5 |
human serum |
100,0 |
55,0 |
11,9 |
100,0 |
2,2 |
2,8 |
6,1 |
5,1 |
mouse serum |
70,0 |
100,0 |
100,0 |
100,0 |
75,0 |
70,0 |
39,3 |
8,7 |
|
|
|
|
|
|
|
|
|
|
PONammonium |
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
no serum |
80,0 |
100,0 |
90,0 |
90,0 |
65,0 |
9,5 |
9,5 |
5,2 |
human serum |
95,0 |
90,0 |
90,0 |
80,0 |
90,0 |
11,8 |
12,4 |
15,7 |
mouse serum |
85,0 |
100,0 |
100,0 |
100,0 |
100,0 |
90,0 |
75,0 |
55,0 |
Example 7 - Optimization of the liposome composition
[0149] Series of liposomes having systematically varied ratios between the cationic and
anionic lipid components were produced and loaded with siRNA as in Example 5. The
cationic lipid component was PONA, the anionic lipids were CHEMS, DMGS or DOGS and
the cholesterol content was varied between 0 and 40mol%. Liposomes having a ratio
of the cationic : anionic lipid of 1 or greater but also some of the other liposomes
were further supplied with 2mol% DMPE-PEG2000 (Nippon Oils and Fats) to avoid aggregation
of the particles. This modification is indicated by a "+" in the table.
[0150] HeLa cells were grown and maintained as in Example 2 and liposomes were added to
the cells in concentrations between 6 nM and 200 nM, incubation was continued for
72 h and cell viability was determined as above. The efficacy of transfection is expressed
here as IC
50 as in the examples above. In addition, the IC
50 was determined for the liposomes carrying the inactive siRNA (SCR) and the ratio
between IC
50 (SCR) and IC
50 (PLK1) was determined. A high value for this parameter indicates a very specific
inhibition of the cellular viability by the PLK1 siRNA, low unspecific effects contributed
by the carrier and low levels of cytotoxicity in general.
Table 11: Optimization results for CHEMS. Lowest and highest detectable IC
50 values are 6 and 200 nM, respectively.
|
C/A |
0,33 |
0,33+ |
0,5 |
0,5+ |
0,67 |
0,67+ |
0,82 |
0,82+ |
1+ |
1,22+ |
1,5+ |
2+ |
PLK |
0% Chol |
44 |
77 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
20% Chol |
54 |
79 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
40% Chol |
67 |
94 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
C/A |
0,33 |
0,33+ |
0,5 |
0,5+ |
0,67 |
0,67+ |
0,82 |
0,82+ |
1+ |
1,22+ |
1,5+ |
2+ |
SCR |
0% Chol |
90 |
86 |
113 |
152 |
23 |
200 |
16 |
21 |
15 |
16 |
14 |
11 |
20% Chol |
73 |
90 |
109 |
128 |
200 |
200 |
26 |
23 |
21 |
11 |
16 |
10 |
40% Chol |
94 |
117 |
198 |
200 |
200 |
200 |
6 |
6 |
30 |
14 |
27 |
12 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
C/A |
0,33 |
0,33+ |
0,5 |
0,5+ |
0,67 |
0,67+ |
0,82 |
0,82+ |
1+ |
1,22+ |
1,5+ |
2+ |
SCR/ PLK |
0% Chol |
2,05 |
1,12 |
18,86 |
25,33 |
3,81 |
83,33 |
2,60 |
3,52 |
2,50 |
2,68 |
2,30 |
1,84 |
20% Chol |
1,37 |
1,14 |
18,10 |
21,39 |
83,33 |
83,33 |
4,26 |
3,77 |
3,45 |
1,84 |
2,65 |
1,69 |
40% Chol |
1,40 |
1,24 |
32,96 |
83,33 |
83,33 |
83,33 |
1,00 |
1,00 |
5,00 |
2,39 |
4,48 |
1,97 |
Table 12: Optimization results for DMGS. Lowest and highest detectable IC
50 values are 6 and 200 nM, respectively.
|
C/A |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
PLK |
0% Chol |
98 |
200 |
200 |
188 |
6 |
6 |
6 |
6 |
20% Chol |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
40% Chol |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
6 |
|
|
|
|
|
|
|
|
|
|
|
C/A |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
SCR |
0% Chol |
200 |
200 |
200 |
158 |
14 |
6 |
10 |
14 |
20% Chol |
200 |
54 |
8 |
8 |
13 |
9 |
9 |
10 |
40% Chol |
155 |
23 |
11 |
6 |
6 |
14 |
9 |
12 |
|
|
|
|
|
|
|
|
|
|
|
C/A |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
SCR/ PLK |
0% Chol |
5,11 |
no effect |
no effect |
0,84 |
2,26 |
1,00 |
1,66 |
2,36 |
20% Chol |
83,33 |
9,01 |
1,27 |
1,26 |
2,20 |
1,55 |
1,45 |
1,69 |
40% Chol |
25,85 |
3,90 |
1,83 |
1,00 |
1,00 |
2,27 |
1,54 |
1,97 |
Table 13: Optimization results for DOGS. Lowest and highest detectable IC
50 values are 6 and 200 nM, respectively.
|
C/A |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
PLK |
0% Chol |
200 |
200 |
200 |
200 |
6 |
6 |
6 |
6 |
20% Chol |
22 |
200 |
200 |
200 |
6 |
6 |
6 |
6 |
40% Chol |
6 |
170 |
200 |
200 |
6 |
6 |
6 |
6 |
|
|
|
|
|
|
|
|
|
|
|
C/A |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
SCR |
0% Chol |
200 |
200 |
200 |
200 |
14 |
10 |
16 |
10 |
20% Chol |
200 |
200 |
200 |
200 |
21 |
10 |
12 |
8 |
40% Chol |
15 |
197 |
200 |
200 |
12 |
7 |
9 |
9 |
|
|
|
|
|
|
|
|
|
|
|
C/A |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
SCR/ PLK |
0% Chol |
no effect |
no effect |
no effect |
no effect |
2,40 |
1,59 |
2,65 |
1,63 |
20% Chol |
22,42 |
no effect |
no effect |
no effect |
3,45 |
1,65 |
2,07 |
1,29 |
40% Chol |
2,48 |
1,16 |
no effect |
no effect |
1,93 |
1,09 |
1,48 |
1,55 |
Example 8 - Liposomes comprising a pyridinium lipid
[0151] SAINT-18 was used as the cationic lipid, its methylated pyridinium structure provides
a charged imino moiety. CHEM, DMGS and DOGS were individually used as anionic lipids
providing the carboxyl functional group. Series of liposomes having systematically
varied ratios between the cationic and anionic lipid components were produced and
loaded with siRNA as in Example 5. The lipid mixture was further supplied with 20
or 40 mol% cholesterol. Liposomes having a ratio of the cationic: anionic lipid of
1 or greater were further supplied with 2mol% DMPE-PEG2000 (Nippon Oils and Fats)
to avoid aggregation of the particles, This modification is indicated by a "+" in
the table.
[0152] HeLa cells were grown and maintained as in Example 2 and liposomes were added to
the cells in concentrations between 50 pM and 50 nM, incubation was continued for
72 h and cell viability was determined as above. The efficacy of transfection is expressed
here as IC
50 as in the examples above. In addition, the IC
50 was determined for the liposomes carrying the inactive siRNA (SCR) and the ratio
between IC
50 (SCR) and IC
50 (PLK1) was determined. A high value for this parameter indicates a very specific
inhibition of the cellular viability by the PLK1 siRNA, low unspecific effects contributed
by the carrier and low levels of cytotoxicity in general.
Table 14: transfection results for liposomes from SAINT-18, CHEMS and cholesterol
lipid anion CHEMS, no serum |
|
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
PLK1 |
20% Chol |
2,2 |
no eff. |
1,7 |
33,9 |
17,8 |
7,2 |
4,1 |
2,7 |
40%Chol |
7,8 |
no eff. |
1,5 |
32,0 |
7,2 |
4,4 |
2,1 |
6,4 |
SCR |
20% Chol |
no eff. |
no eff. |
11,9 |
no eff. |
37,4 |
19,6 |
20,7 |
29,0 |
40%Chol |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
16,9 |
18,6 |
28,0 |
SCR/PLK-1 |
20% Chol |
>22,7 |
|
7,2 |
>1,5 |
2,1 |
2,7 |
5,0 |
10,6 |
40%Chol |
>6,4 |
|
>32,5 |
>1,6 |
>7,0 |
3,9 |
8,7 |
4,4 |
lipid anion CHEMS, plus mouse serum |
|
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
PLK1 |
20% Chol |
no eff. |
no eff. |
14,4 |
no eff. |
no eff. |
no eff. |
no eff. |
31,7 |
40%Chol |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
35,5 |
23,1 |
SCR |
20% Chol |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
40%Chol |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
41,5 |
38,1 |
SCR/PLK-1 |
20% Chol |
|
|
>3,5 |
|
|
|
|
>1,6 |
40%Chol |
|
|
|
|
|
|
1,2 |
1,6 |
Table 15: transfection results for liposomes from SAINT-18, DMGS and cholesterol
lipid anion DMGS, no serum |
|
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
PLK1 |
20% Chol |
0,8 |
2,3 |
1,7 |
43,6 |
24,3 |
7,5 |
5,2 |
3,8 |
40%Chol |
1,6 |
2,3 |
1,8 |
2,2 |
11,4 |
8,9 |
3,8 |
5,8 |
SCR |
20% Chol |
7,7 |
8,2 |
5,3 |
36,0 |
28,1 |
27,6 |
10,5 |
10,3 |
40%Chol |
4,7 |
no eff. |
22,6 |
5,7 |
27,7 |
28,5 |
8,1 |
8,2 |
SCR/PLK-1 |
20% Chol |
9,2 |
3,6 |
3,1 |
0,8 |
1,2 |
3,7 |
2,0 |
2,7 |
40%Chol |
2,9 |
>22,1 |
12,6 |
2,5 |
2,4 |
3,2 |
2,1 |
1,4 |
lipid anion DMGS; plus mouse serum |
|
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
PLK1 |
20% Chol |
4,0 |
8,0 |
2,7 |
no eff. |
26,5 |
28,8 |
no eff. |
no eff. |
40%Chol |
2,0 |
2,2 |
1,6 |
1,6 |
no eff. |
21,0 |
no eff. |
no eff. |
SCR |
20% Chol |
10,1 |
no eff. |
23,4 |
no eff. |
29,1 |
31,2 |
25,7 |
28,4 |
40%Chol |
7,7 |
18,0 |
25,8 |
6,3 |
28,0 |
37,4 |
31,7 |
25,7 |
SCR/PLK-1 |
20% Chol |
2,5 |
>6,2 |
8,6 |
|
1,1 |
1,1 |
|
|
40%Chol |
3,9 |
8,0 |
16,5 |
3,9 |
|
1,8 |
|
|
Table 16: transfection results for liposomes from SAINT-18, DOGS and cholesterol
lipid anion DOGS, no serum |
|
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
PLK1 |
20% Chol |
36,9 |
38,0 |
no eff. |
no eff. |
9,2 |
8,1 |
7,0 |
6,1 |
40%Chol |
6,9 |
19,4 |
no eff. |
no eff, |
22,7 |
8,7 |
6,6 |
8,5 |
SCR |
20% Chol |
no eff. |
no eff. |
no eff. |
no eff. |
27,5 |
20,5 |
10,2 |
25,9 |
40%Chol |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
no eff. |
SCR/PLK-1 |
20% Chol |
>1,4 |
>1,3 |
|
|
3,0 |
2,5 |
1,5 |
4,3 |
40%Chol |
>7,3 |
>2,6 |
|
|
>2,2 |
>5,7 |
>7,6 |
>5,9 |
lipid anion DOGS, plus serum |
|
C/A ratio |
0,33 |
0,5 |
0,67 |
0,82 |
1+ |
1,22+ |
1,5+ |
2+ |
PLK-1 |
20% Chol |
2,2 |
18,4 |
no eff. |
no eff. |
27,5 |
30,5 |
26,3 |
28,1 |
40%Chol |
2,7 |
7,7 |
no eff. |
no eff. |
27,4 |
29,2 |
30,4 |
30,8 |
SCR |
20% Chol |
2,8 |
no eff. |
no eff. |
no eff. |
32,6 |
34,4 |
30,9 |
33,2 |
40%Chol |
no eff. |
8,2 |
no eff. |
no eff. |
30,6 |
no eff. |
no eff. |
42,8 |
SCR/PLK-1 |
20% Chol |
1,3 |
>2,7 |
|
|
1,2 |
1,1 |
1,2 |
1,2 |
40%Chol |
>18,6 |
1,1 |
|
|
1,1 |
>1,7 |
>1,6 |
1,4 |
[0153] As it becomes clear from the data in tables 14 to 16, a large number of amphoteric
liposomes facilitate the transfection of cells even in the presence of mouse serum.
Particularly useful are liposomes comprising SAINT-18 in combination with the diacylglycerols
DMGS and DOGS, while the combination with CHEMS was only effective at C/A=0.67. As
with the PONA combinations, the amphoteric constructs transfect the cells with high
specificity, while the compositions having C/A > 1 do not provide a highly specific
transfection as indicated by SCR/PLK1 being below 2.
[0154] Other embodiments and uses of the invention will be apparent to those skilled in
the art from consideration of the specification and practice of the invention disclosed
herein. The specification and examples should be considered exemplary only with the
true scope and spirit of the invention indicated by the following claims.
Example 9 - Zeta potential measurements
9.1 Analysis of the zeta potential for liposomes formed from PONA:CHEMS:CHOL
[0155] 100µl of a lipidmix comprising x Mol% PONA, y mol% CHEMS and 20 Mol% cholesterol
(20mM total lipid concentration, solvent: isopropanol) was injected in 900µl of a
buffer comprising 10mM acetic acid and 10mM phosphoric acid pH4. X and Y, the molar
percentages for PONA and CHEMS were adjusted to yield the C/A ratios in table 17.
The suspension was immediately vortexed and 3mL of a pH adjusting buffer was added.
Buffers were selected from the group of : 50mM acetic acid and 50mM phosphoric acid,
adjusted to pH 4, 5, 6.5 or 7.5 using NaOH or 50mM Na
2HPO
4 / 50mM sodium acetate pH9.4. The mixing pH is was recorded and is given in the table
17 below together with the zeta potentials of the resulting lipid particles that were
monitored using a Zetasizer HSA3000.
Table 17: Zeta Potentials for lipid particles from PONA:CHEMS:CHOL
C/A ratio |
0,5 |
0,67 |
0,82 |
1,00 |
1,22 |
1,5 |
2,00 |
Final pH |
|
|
|
|
|
|
|
7,56 |
-54,40 |
-58,90 |
-58,20 |
-61,80 |
-21,80 |
22,60 |
#NV |
7,20 |
-48,47 |
-46,00 |
-44,90 |
-50,00 |
-21,10 |
14,97 |
#NV |
6,32 |
-44,33 |
-37,07 |
-31,37 |
0,64 |
23,43 |
9,60 |
#NV |
4,84 |
19,67 |
18,00 |
22,15 |
31,80 |
32,77 |
32,57 |
28,37 |
3,93 |
35,53 |
41,73 |
43,75 |
46,63 |
46,20 |
43,40 |
43,23 |
[0156] Clearly, the particles display amphoteric character even for mixtures having a C/A
of 1.22, that is, greater than 1. Particles having a C/A of 0.67, 0.82 or 1 were also
produced at pH7.4 and subsequently exposed to lower pH. There were no apparent changes
to the zeta potentials shown in table 17.
9.2 Zeta potential measurements for combinations wherein DOPA is the anionic lipid
[0157] Lipid particles were also prepared from binary mixtures of GUADACA and DOPA, an imino/phosphate
combination of lipid head groups. The particles were prepared in the same fashion
as described in 9.1 and the zeta potentials of table 18 were recorded for mixtures
having different C/A ratios:
Table 18: Zeta Potentials for lipid particles from GUADACA:DOPA
C/A |
0,65 |
0,75 |
0,98 |
1,16 |
1,4 |
final pH |
|
|
|
|
|
4,5 |
21 |
13 |
38 |
46 |
51 |
5,32 |
-24 |
22 |
20 |
33 |
35 |
6,25 |
-8 |
-45 |
-30 |
2 |
24 |
7,02 |
-61 |
-67 |
-8 |
-56 |
-6 |
7,81 |
-67 |
-78 |
-76 |
-65 |
-21 |
[0158] As with the particles obtained in 9.1, particles with amphoteric character are also
obtained with C/A>1. Still, the drift in the isoelectric point follows the expectations.
9.3 Zeta potential measurements for DOTAP:CHEMS:CHOL
[0159] For comparison, the same measurements were performed with lipid mixtures wherein
PONA was substituted by DOTAP. The results are shown in table 19. In contrast to PONA:
CHEMS, amphoteric particles from DOTAP:CHEMS are only found at C/A<1.
Table 19: Zeta potential for lipid particles from DOTAP:CHEMS:CHOL
Ratio C/A |
0,67 |
0,82 |
1 |
1,22 |
Final pH |
|
|
|
|
7,56 |
-37,7 |
-21,63 |
4,9 |
13,25 |
7,20 |
-50,17 |
-24,1 |
#NV |
12,55 |
6,32 |
#NV |
#NV |
11,43 |
7,37 |
4,84 |
25,6 |
32,1 |
20,27 |
9,3 |
3,93 |
52,13 |
43,93 |
47,77 |
12,15 |
Example 10 - Synthesis of CHOLGUA
[0160] 25g cholesterolchloroformiate and 50 equivalents (eq.) ethylendiamine were dissolved
in dichloromethane and allowed to react for 6h at 20°C. The aminoethylcarbamoyl-cholestererol
was isolated using chromatography and crystallization. Yield was 28.7g, purity 90%.
[0161] CHOLGUA was synthesized from the aminoethylcarboamoyl-cholesterol isolated before.
30g of the substance were incubated with 1.5eq. of 1H-pyrazole-1-carboxamidinium hydrochloride
and 4eq. N,N-diisopropylethylamin in dichloromethane/ethanol for 16h at 20°C, after
which the product was isolated by chromatography. Purity was 95%, Yield 16.5g.
Example 11 - Synthesis of DACA. PDACA and MPDACA
[0162] 42,4g of oleyl alcohol , 2.5 eq. of diisoproylazodicarboxylate, 2.5 eq. triphenylphosphine
and 5 eq. Lil were reacted in tetrahydrofuran (THF) for 24h at 20°C. Oleyliodid was
isolated by chromatography with a purity of 90%, yield was 13.4g,
[0163] In a second step, 10g oleic acid were mixed with 2.2 eq. of lithiumdiisopropylamide
in THF for 0.5h at 20°C, after which 1eq. oleyliodide was added. The mixture was incubated
for 2h at 20°C and DACA purified from the reaction mix using chromatography. Purity
was 95%, Yield 14,96g.
[0164] For the synthesis of PDACA, 2g of DACA, 1.2 eq. of 4-picolylamine, 1.4 eq. of O-benzotriazole-1-yl-N,N,N'N'-tetramethyluronium
tetrafluoroborate and 4 eq. of N-methylmorpholine were mixed in THF for 24h at 20°C.
The reaction mixture was purified including chromatography. Purity of PDACA was 95%,
yield was 1,72g.
[0165] For the synthesis of MPDACA, 2g of PDACA was dissolved in THF together with 2eq.
of dimethylsulphate and the mixture was incubated for 16h at 20°C, after which MPDACA
was purified by chromatography. Purity of MPDACA: 95%, Yield:1.71g
Example 12 - Synthesis of GUADACA
[0166] In a first step, 3.5g DACA and 1.5 eq. of 1,1'-carbonyldiimidazol were dissolved
in dichloromethane and incubated for 16h at 20°C, after which 30 eq. ethylenediamine
were added. The reaction mixture was incubated for 4h at 20°C after which aminoethyl-DACA
was purified including chromatography. Purity was 90%, Yield 3.2g.
[0167] GUADACA was synthesized from aminoethyl-DACA and for that, 3.2g of aminoethyl-DACA,
2.5 eq. 1H-pyrazole-1-carboxamidine hydrochloride and 12eq. N,N-diisopropylethylamine
were incubated for 3h at 20°C, after which GUADACA was isolated. Purity: 95%, Yield:
2.24g.
Example 13 - Synthesis of BADACA
[0168] BADACA was synthesized from DACA according to the following procedure: 4,15g DACA,
1.2 eq. p-aminobenzamidine, 1.2 eq. N,N'-dicyclohexylcarbodiimid and 3 eq. of 4-Dimethylaminopyridine
were mixed in dry dimethylformamide and incubated for 16h at 70°C. BADACA was isolated
from the reaction using chromatography. Purity: 95%, Yield: 1,62g
Example 14 - Serum resistant transfection of DACA or cholesterol based cationic lipids
in combination with carboxyl lipids
[0169] Series of liposomes having systematically varied ratios between the cationic and
anionic lipid components were produced and loaded with siRNA as in Example 5. The
cationic lipid components were CHOLGUA, CHIM, DC-CHOL, TC-CHOL, GUADACA, MPDACA, BADACA
and PDACA. The anionic lipids were CHEMS, DMGS or DOGS and the cholesterol content
was either 20 or 40 mol%, all lipid mixtures are identified in the data tables. Liposomes
having a ratio of the cationic: anionic lipid of 1 or greater (C/A>=1) were further
supplied with 1.5mol% DMPE-PEG2000 (Nippon Oils and Fats).
[0170] HeLa cells were grown and maintained as in Example 2 and mouse serum (SIGMA-Aldrich)
was added directly to the cells for 120 min. Following that, the liposomes were added
to the cells, incubation was continued for 72 h and cell viability was determined
as above. The highest concentrations of liposomes were 40nM and 36nM for experiments
in the absence or presence of mouse serum, respectively. The efficacy of transfection
is expressed here as IC
50 (in nM siRNA) as in Example 5. All results from this screening experiment are shown
in figures 1- 6.
[0171] Many of the transfecting mixtures resulted in very potent transfection of HeLa cells
with siRNA, as indicated by the very low IC50 values, Combinations of lipids comprising
imino lipids such as CHOLGUA, but more so MPDACA, GUADACA or PONA remain potent transfectants
even in the presence of mouse serum.
Example 15 - Serum resistant transfection of several cationic lipids in combination
with phosphate lipid
[0172] Series of liposomes having C/A ratios of either 0.75 or 1 were produced and loaded
with siRNA as in Example 5. The cationic lipid components were CHOLGUA, CHIM, DC-CHOL,
GUADACA, MPDACA, BADACA, PONA, DOTAP or DODAP. The anionic lipid was DOPA and the
cholesterol content was 40 mol%, all lipid mixtures are identified in table 20. Liposomes
were further supplied with 1,5mol% DMPE-PEG2000 (Nippon Oils and Fats).
[0173] HeLa cells were grown and maintained as in Example 2 and mouse serum (SIGMA-Aldrich)
was added directly to the cells for 120 min. Following that, the liposomes were added
to the cells, incubation was continued for 72 h and cell viability was determined
as above. The efficacy of transfection is expressed here as IC
50 (in nM of siRNA) as in Example 5.
[0174] Many of the transfecting mixtures resulted in very potent transfection of HeLa cells
with siRNA, as indicated by the very low IC
50 values. Combinations of lipids comprising imino lipids such as CHOLGUA, but more
so MPDACA, GUADACA or PONA remain potent transfectants even in the presence of mouse
serum.
Table 20: IC
50 values (nM siRNA) for various liposomes in the presence and absence of mouse serum.
Serum inhibition "not potent" refers to a lack of minimum potency in the presence
of mouse serum, in these cases the inhibition factor cannot be defined. The highest
concentration of siRNA in the test was 146nM.
|
|
- mouse serum |
+ mouse serum |
serum inhibition |
C/A |
Cation |
IC50 PLK1 |
IC50 Scr. |
IC50 PLK1 |
IC50 Scr. |
0.75 |
CholGUA |
8 |
160 |
104 |
146 |
12 |
CHIM |
26 |
160 |
146 |
146 |
not potent |
DC-Chol |
28 |
160 |
146 |
146 |
not potent |
MPDACA |
5 |
67 |
10 |
146 |
2 |
GUADACA |
6 |
39 |
26 |
146 |
4 |
BADACA |
159 |
160 |
146 |
146 |
not potent |
PONA |
6 |
24 |
146 |
146 |
not potent |
DOTAP |
21 |
152 |
146 |
146 |
not potent |
DODAP |
160 |
160 |
146 |
146 |
not potent |
1 |
CholGUA |
9 |
141 |
128 |
146 |
14 |
CHIM |
33 |
160 |
146 |
146 |
not potent |
DC-Chol |
29 |
160 |
146 |
146 |
not potent |
MPDACA |
12 |
100 |
4 |
146 |
0,3 |
GUADACA |
9 |
89 |
7 |
146 |
1 |
BADACA |
38 |
160 |
146 |
146 |
not potent |
PONA |
2 |
66 |
21 |
146 |
10 |
DOTAP |
13 |
160 |
76 |
146 |
6 |
DODAP |
94 |
160 |
146 |
146 |
not potent |
Example 16 - Serum resistant transfection is poor in the absence of negatively charged
lipids.
[0175] A series of liposomes was produced from cationic lipids and cholesterol as a neutral
lipid. No anionic lipids were used in these preparations. The cationic lipid components
were CHOLGUA, CHIM, DC-CHOL, ADACA, GUADACA, MPDACA, BADACA, PONA, DOTAP and DODAP
and the liposomes were produced with the procedure described in example 5.
[0176] The cholesterol content was 40 mol% and liposomes were further supplied with 1.5mol%
DMPE-PEG2000 (Nippon Oils and Fats) to avoid aggregate formation in the presence of
siRNA.
[0177] HeLa cells were grown and maintained as in Example 2 and mouse serum (SIGMA-Aldrich)
was added directly to the cells for 120 min. Following that, the liposomes were added
to the cells, incubation was continued for 72 h and cell viability was determined
as above. The efficacy of transfection is expressed here as IC
50 (in nM of siRNA) as in Example 5.
[0178] The results obtained are shown in table 21 below. In all cases, the transfection
efficacy is substantially lower than that of the mixtures further comprising an anionic
lipid. With the exception of GUADACA or PONA, there was no activity detectable in
the presence of mouse serum.
Table 21: IC
50 values (nM siRNA) for various liposomes in the presence and absence of mouse serum.
Serum inhibition "not potent" refers to a lack of minimum potency in the presence
of mouse serum, in these cases the inhibition factor cannot be defined. The highest
concentration of siRNA in the test was 160 or 146nM in the absence of presence of
mouse serum, respectively.
|
no mouse serum |
with mouse serum |
serum inhibition |
Cation |
IC50 PLK1 |
IC50 Scr. |
IC50 PLK1 |
IC50 Scr. |
CholGUA |
93 |
160 |
146 |
146 |
not potent |
CHIM |
160 |
160 |
146 |
146 |
not potent |
DC-Chol |
101 |
109 |
146 |
146 |
not potent |
MPDACA |
27 |
154 |
146 |
146 |
not potent |
GUADACA |
22 |
69 |
95 |
146 |
4 |
BADACA |
99 |
160 |
146 |
146 |
not potent |
PONA |
30 |
100 |
70 |
99 |
2 |
DOTAP |
160 |
160 |
146 |
146 |
not potent |
DODAP |
160 |
160 |
146 |
146 |
not potent |