FIELD OF THE INVENTION
[0001] The present invention relates to the treatment of Alzheimer's disease and other neurodegenerative
and/or neurological disorders in mammals, including humans. This invention also relates
to the modulation, in mammals, including humans, of the production of A-beta peptides
that can contribute to the formation of neurological deposits of amyloid protein.
More particularly, this invention relates to novel bicyclic pyridinone compounds useful
for the treatment of neurodegenerative and/or neurological disorders, such as Alzheimer's
disease and Down's Syndrome.
BACKGROUND OF THE INVENTION
[0002] Dementia results from a wide variety of distinctive pathological processes. The most
common pathological processes causing dementia are Alzheimer's disease (AD), cerebral
amyloid angiopathy (CM) and prion-mediated diseases (see, e.g.,
Haan et al., Clin. Neurol. Neurosurg. 1990, 92(4):305-310;
Glenner et al., J. Neurol. Sci. 1989, 94:1-28). AD affects nearly half of all people past the age of 85, the most rapidly growing
portion of the United States population. As such, the number of AD patients in the
United States is expected to increase from about 4 million to about 14 million by
2050.
[0004] The present invention relates to a group of γ-secretase modulators, useful for the
treatment of neurodegenerative and/or neurological disorders such as Alzheimer's disease
and Down's Syndrome. (see
Ann. Rep. Med. Chem. 2007, Olsen et al., 42: 27-47).
SUMMARY OF THE INVENTION
[0005] The present invention is directed to γ-secretase modulators of Formula I or pharmaceutically
acceptable salts thereof as represented below:

wherein:
X is a 5- to 14-membered heteroaryl containing 1-3 heteroatoms;
R1 is hydrogen, halogen, C1-C6alkyl, C3-C6cycloalkyl, or C2-C6alkenyl; wherein said alkyl, cycloalkyl or alkenyl is optionally substituted with
one to three substituents each independently selected from the group consisting of
fluoro, hydroxyl and C1-C6alkoxy;
A is a C3-C6cycloalkyl or a 4- to 10-membered heterocycloalkyl; wherein said cycloalkyl or heterocycloalkyl
is optionally substituted with one to three substituents each independently selected
from the group consisting of halogen and C1-C6alkyl;
R2a and R2b for each occurrence is independently hydrogen, fluoro, cyano, -CF3, C1-C6alkyl, C2-C6alkenyl, C3-C6cycloalkyl, C4-C8bicycloalkyl, C2-C6alkynyl or phenyl; wherein said alkyl, alkenyl, cycloalkyl, bicycloalkyl, alkynyl
or phenyl is optionally substituted with one to three substituents each independently
selected from the group consisting of cyano, C1-C3alkyl and fluoro; or R2a and R2b together with the carbon to which they are bonded form a 3- to 5-membered cycloalkyl
optionally substituted with one to three of R8;
R3 is hydrogen, halogen, C1-C6alkyl, C2-C6alkenyl, -(C(R10)2)t-(C3-C6cycloalkyl), -(C(R10)2)t(4- to 10-membered heterocycloalkyl), -(C(R10)2)t-(C6-C10aryl), -(C(R10)2)t-(5-to 10-membered heteroaryl) or -(C(R10)2)t-OR12; wherein said alkyl, alkenyl, cycloalkyl, heterocycloalkyl, aryl or heteroaryl is
optionally substituted with one to five of R11;
R4a and R4b are each independently hydrogen, -CF3, or C1-C6alkyl, wherein said alkyl is optionally substituted with one to three substituents
each independently selected from the group consisting of -CF3, cyano and fluoro; or R4a and R4b together with the carbon to which they are bonded form a 3- to 5-membered cycloalkyl,
wherein said cycloalkyl is optionally substituted with one to three substituents each
independently selected from the group consisting of -CF3, cyano, fluoro and C1-C6alkyl;
R5a and R5b for each occurrence are each independently hydrogen, -CF3, or C1-C6alkyl, wherein said alkyl is optionally substituted with one to three substituents
each independently selected from the group consisting of -CF3, cyano and fluoro; or R5a and R5b together with the carbon to which they are bonded form a 3- to 5-membered cycloalkyl,
wherein said cycloalkyl is optionally substituted with one to three substituents each
independently selected from the group consisting of -CF3, cyano, fluoro and C1-C6alkyl;
R6, R7 and R8 are each independently hydrogen, -CF3, cyano, halogen, C1-C6alkyl, or -OR9; provided that R6 and R7 cannot both be -OH;
R9 is hydrogen, C1-C6alkyl or -CF3; wherein said alkyl is optionally substituted with one to three substituents each
independently selected from the group consisting of cyano and fluoro;
each R10 is independently hydrogen, halogen, cyano, -CF3, C1-C6alkyl, or -SF5; wherein said alkyl is optionally substituted with one to three fluoro;
each R11 is independently hydrogen, halogen, -CF3, -SF5, -Si(CH3)3, -OR12, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, -(C(R10)2)t-(C3-C6cycloalkyl), -(C(R10)2)t-(C6-C10aryl) or -(C(R10)2)t-(5- to 10-membered heteroaryl) wherein said -Si(CH3)3, alkyl, alkenyl, alkynyl, cycloalkyl, aryl or heteroaryl is optionally substituted
with one to five substituents each independently selected from the group consisting
of halogen and -CF3;
each R12 is hydrogen, C1-C6alkyl, -(C(R13)2)n-(C3-C6cycloalkyl), -(C(R13)2)n-(4- to 10-membered heterocycloalkyl), -(C(R13)2)n-(C6-C10aryl), or -(C(R13)2)n-(5- to 10-membered heteroaryl); wherein said alkyl, cycloalkyl, heterocycloalkyl,
aryl or heteroaryl is optionally substituted with one to five of R14;
each R13 is independently hydrogen, C1-C6alkyl, C2-C6alkenyl, C2-C6alkynyl, halogen, cyano, -CF3, or -OCF3;
R14 is independently hydrogen, -CF3, cyano, halogen or C1-6alkyl; wherein said alkyl is optionally substituted with one to three substituents
each independently selected from the group consisting of hydroxyl, -CF3, cyano and fluoro; and
each t or n is an integer independently selected from 0, 1, 2 or 3;
each z is an integer independently selected from 1 or 2;
each y is an integer independently selected from 0, 1, 2, 3 or 4.
[0006] Compounds of the invention include Examples 1-73 or a pharmaceutically acceptable
salt thereof as described herein.
[0007] Also provided herein are compositions comprising a pharmaceutically effective amount
of one or more of the compounds described herein and a pharmaceutically acceptable
vehicle, carrier or excipient.
[0008] The compounds of Formula I are γ-secretase modulators. γ-Secretase plays a role
in the production of amyloid beta protein (Aβ) plaques associated with Alzheimer's
Disease. Accordingly, the compounds of Formula I are useful in treating a variety
of neurodegenerative and/or neurological disorders related to Aβ production.
[0009] Other features and advantages of this invention will be apparent from this specification
and the appending claims which describe the invention.
DETAILED DESCRIPTION OF THE INVENTION
[0010] The headings within this document are only being utilized to expedite its review
by the reader. They should not be construed as limiting the invention or claims in
any manner.
Definitions and Exemplifications
[0011] As used throughout this application, including the claims, the following terms have
the meanings defined below, unless specifically indicated otherwise. The plural and
singular should be treated as interchangeable, other than the indication of number:
The term "C1-C6alkyl" refers to a linear or branched-chain saturated hydrocarbyl substituent (i.e.,
a substituent obtained from a hydrocarbon by removal of a hydrogen) containing from
1 to 6 carbon atoms. Examples of such substituents include methyl, ethyl, propyl (including
n-propyl and isopropyl), butyl (including n-butyl, isobutyl, sec-butyl and tert-butyl), pentyl, and hexyl.
The term "C1-C3alkyl" refers to a linear or branched-chain saturated hydrocarbyl substituent (i.e.,
a substituent obtained from a hydrocarbon by removal of a hydrogen) containing from
1 to 3 carbon atoms. Examples of such substituents include methyl, ethyl, and propyl
(including n-propyl and isopropyl).
The term "C2-C6alkenyl" refers to an aliphatic hydrocarbon containig from 1 to 6 carbon atoms and
having at least one carbon-carbon double bond, including straight chain or branched
chain groups having at least one carbon-carbon double bond. Representative examples
include, but are not limited to, ethenyl, 1-propenyl, 2-propenyl (allyl), isopropenyl,
2-methyl-1-propenyl, 1-butenyl, and 2-butenyl. When the compounds of the invention
contain a C2-C6alkenyl group, the compound may exist as the pure E (entgegen) form, the pure Z (zusammen)
form, or any mixture thereof.
The term "C2-C6alkynyl" refers to an aliphatic hydrocarbon containing from 2 to 6 carbon atoms and
having at least one carbon-carbon triple bond, including straight chain or branched
chain groups having at least one carbon-carbon triple bond. Representative examples
of an alkynyl include, but are not limited to, to acetylenyl, 1-propynyl, 2-propynyl,
3-butynyl, 2-pentynyl, and 1-butynyl.
The term "C3-C6cycloalkyl" refers to a carbocyclic substituent obtained by removing a hydrogen from
a saturated carbocyclic molecule and having 3 to 6 carbon atoms. A cycloalkyl may
be a single ring, which typically contains from 3 to 6 ring atoms. Examples include
cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl. A cycloalkyl may contain one
or more double or triple bonds depending upon the number of carbon atoms contained
in the ring (e,g,. cyclohexene has one carbon to carbon double bond or cycloheyne
has one carbon to carbon triple bond). Alternatively, a cycloalkyl may be a double
ring such as a bicycloalkyl, e.g., C4-C8bicycloalkyl. The term "C4-C8bicycloalkyl" refers to a double ring containing 4 to 8 carbon atoms. The bicycloalkyl
may be fused together, such as bicyclo[1.1.0]butane,
bicyclo[2.1.0]pentane, bicyclo[2.2.0]hexane, bicyclo[3.1.0]hexane
bicylco[3.2.0]heptanes and octohydropentalene. The term "bicycloalkyl" also includes
bridged bicycloalkyl systems such as, but not limited to, bicyclo[2.2.1]heptane and
bicyclo[1.1.1]pentane.
The term "C6-C10aryl" refers to an aromatic substituent containing from 6 to 10 carbon atoms, including
one ring or two fused rings. Examples of such aryl substituents include, but not limited
to, phenyl, naphthyl, and dihydroindenyl.
The term "hydrogen" refers to a hydrogen substituent, and may be depicted as -H.
The term "hydroxy" or "hydroxyl" refers to -OH. When used in combination with another
term(s), the prefix "hydroxy" indicates that the substituent to which the prefix is
attached is substituted with one or more hydroxy substituents. Compounds bearing a
carbon to which one or more hydroxy substituents are attached include, for example,
alcohols, enols and phenol.
The term "cyano" (also referred to as "nitrile") means -CN, which also may be depicted:

The term "halogen" refers to fluorine (which may be depicted as -F), chlorine (which
may be depicted as -CI), bromine (which may be depicted as -Br), or iodine (which
may be depicted as -I). In one embodiment, the halogen is chlorine. In another embodiment,
the halogen is fluorine. In another embodiment, the halogen is bromine.
The term "(C1-C6)alkoxy" as used herein, means a (C1-C6)alkyl group, as defined herein, appended to the parent molecular moiety through an
oxygen atom. Examples include, but are not limited to, methoxy, ethoxy, and n-propoxy.
The term "4- to 10-membered heterocycloalkyl" refers to a substituent obtained by
removing a hydrogen from a saturated or partially saturated ring structure containing
a total of 4 to 10 ring atoms, wherein at least one of the ring atoms is a heteroatom
selected from oxygen, nitrogen, or sulfur. Examples of 4- to 10-membered heterocycloalkyls
include, but are not limited to, dihydrofuranyl, tetrahydrofuranyl, tetrahydropyranyl,
dihydrothiophenyl, and tetrahydrothiophenyl. A heterocycloalkyl alternatively may
comprise 2 or 3 rings fused together, wherein at least one such ring contains a heteroatom
as a ring atom (i.e., nitrogen, oxygen, or sulfur). In a group that has a heterocycloalkyl
substituent, the ring atom of the heterocycloalkyl substituent that is bound to the
group may be the at least one heteroatom when the heteroatom is nitrogen, or it may
be a ring carbon atom, where the ring carbon atom may be in the same ring as the at
least one heteroatom or where the ring carbon atom may be in a different ring from
the at least one heteroatom. Similarly, if the heterocycloalkyl substituent is in
turn substituted with a group or substituent, the group or substituent may be bound
to the at least one heteroatom when the heteroatom is nitrogen, or it may be bound
to a ring carbon atom, where the ring carbon atom may be in the same ring as the at
least one heteroatom or where the ring carbon atom may be in a different ring from
the at least one heteroatom.
The term "5- to 14-membered heteroaryl" refers to an aromatic ring structure containing
from 5 to 14 ring atoms in which at least one of the ring atoms is a heteroatom (i.e.,
oxygen, nitrogen, or sulfur), with the remaining ring atoms being independently selected
from the group consisting of carbon, oxygen, nitrogen, and sulfur. A heteroaryl may
be a single ring or 2 or 3 fused rings. Examples of heteroaryl substituents include
but are not limited to: 6-membered ring substituents such as pyridyl, pyrazyl, pyrimidinyl,
and pyridazinyl; 5-membered ring substituents such as triazolyl, imidazolyl, furanyl,
thiophenyl (also known as "thiofuranyl"), pyrazolyl, oxazolyl, isoxazolyl, thiazolyl,
1,2,3-, 1,2,4-, 1,2,5-, or 1,3,4-oxadiazolyl and isothiazolyl; 6/5-membered fused
ring substituents such as benzothiofuranyl, isobenzothiofuranyl, benzisoxazolyl, benzoxazolyl,
purinyl, and anthranilyl; and 6/6-membered fused ring substituents such as quinolinyl,
isoquinolinyl, cinnolinyl, quinazolinyl, and 1,4-benzoxazinyl. In a group that has
a heteroaryl substituent, the ring atom of the heteroaryl substituent that is bound
to the group may be the at least one heteroatom when the heteroatom is nitrogen, or
it may be a ring carbon atom, where the ring carbon atom may be in the same ring as
the at least one heteroatom or where the ring carbon atom may be in a different ring
from the at least one heteroatom. Similarly, if the heteroaryl substituent is in turn
substituted with a group or substituent, the group or substituent may be bound to
the at least one heteroatom when the heteroatom is nitrogen, or it may be bound to
a ring carbon atom, where the ring carbon atom may be in the same ring as the at least
one heteroatom or where the ring carbon atom may be in a different ring from the at
least one heteroatom. The term "heteroaryl" also includes pyridyl N-oxides and groups containing a pyridine N-oxide ring.
[0012] If a substituent is described as being "substituted," a non-hydrogen substituent
is in the place of a hydrogen substituent on a carbon or nitrogen of the substituent.
Thus, for example, a substituted alkyl substituent is an alkyl substituent wherein
at least one non-hydrogen substituent is in the place of a hydrogen substituent on
the alkyl substituent. To illustrate, monofluoroalkyl is alkyl substituted with a
fluoro substituent, and difluoroalkyl is alkyl substituted with two fluoro substituents.
It should be recognized that if there is more than one substitution on a substituent,
each non-hydrogen substituent may be identical or different (unless otherwise stated).
[0013] If a substituent is described as being "optionally substituted," the substituent
may be either (1) not substituted, or (2) substituted. If a carbon of a substituent
is described as being optionally substituted with one or more of a list of substituents,
one or more of the hydrogens on the carbon (to the extent there are any) may separately
and/or together be replaced with an independently selected optional substituent. If
a nitrogen of a substituent is described as being optionally substituted with one
or more of a list of substituents, one or more of the hydrogens on the nitrogen (to
the extent there are any) may each be replaced with an independently selected optional
substituent.
[0014] This specification uses the terms "substituent," "radical," and "group" interchangeably.
[0015] If a substituent is described as being optionally substituted with up to a particular
number of non-hydrogen substituents, that substituent may be either (1) not substituted;
or (2) substituted by up to that particular number of non-hydrogen substituents or
by up to the maximum number of substitutable positions on the substituent, whichever
is less. Thus, for example, if a substituent is described as a heteroaryl optionally
substituted with up to 3 non-hydrogen substituents, then any heteroaryl with less
than 3 substitutable positions would be optionally substituted by up to only as many
non-hydrogen substituents as the heteroaryl has substitutable positions. To illustrate,
tetrazolyl (which has only one substitutable position) would be optionally substituted
with up to one non-hydrogen substituent. To illustrate further, if an amino nitrogen
is described as being optionally substituted with up to 2 non-hydrogen substituents,
then the nitrogen will be optionally substituted with up to 2 non-hydrogen substituents
if the amino nitrogen is a primary nitrogen, whereas the amino nitrogen will be optionally
substituted with up to only 1 non-hydrogen substituent if the amino nitrogen is a
secondary nitrogen.
[0016] If substituents are described as being "independently selected" from a group, each
substituent is selected independent of the other(s). Each substituent therefore may
be identical to or different from the other substituent(s).
[0017] It is understood that descriptions of any one substituent, such as R
1, may be combined with descriptions of any other substituents, such as R
2, such that each and every combination of the first substituent and the second substituent
is provided herein the same as if each combination were specifically and individually
listed. For example, in one variation, R
1 is taken together with R
2 to provide an embodiment wherein R
1 is methyl and R
2 is halogen.
[0018] As used herein the terms "Formula I", "Formula Ia", "Formula Ib", and "Formula Ic"
may be hereinafter referred to as "compound(s) of the invention." Such terms are also
defined to include all forms of the compound of Formulas I, Ia, Ib, and Ic, including
hydrates, solvates, isomers, crystalline and non-crystalline forms, isomorphs and
polymorphs thereof. For example, the compounds of Formulas I, Ia, Ib and Ic or pharmaceutically
acceptable salts thereof, may exist in unsolvated and solvated forms. When the solvent
or water is tightly bound, the complex will have a well-defined stoichiometry independent
of humidity. When, however, the solvent or water is weakly bound, as in channel solvates
and hygroscopic compounds, the water/solvent content will be dependent on humidity
and drying conditions. In such cases, non-stoichiometry will be the norm.
[0019] The compounds of of the invention may exist as clathrates or other complexes. Included
within the scope of the invention are complexes such as clathrates, drug-host inclusion
complexes wherein, in contrast to the aforementioned solvates, the drug and host are
present in stoichiometric or non-stoichiometric amounts. Also included are complexes
of Formulas I, Ia, Ib, and Ic containing two or more organic and/or inorganic components
which may be in stoichiometric or non-stoichiometric amounts. The resulting complexes
may be ionized, partially ionized, or non-ionized. For a review of such complexes,
see
J. Pharm. Sci., 64 (8), 1269-1288 by Haleblian (August 1975).
[0020] The compounds of the invention may have asymmetric carbon atoms. The carbon-carbon
bonds of the compounds of of the invention may be depicted herein using a solid line
(

), a solid wedge (

), or a dotted wedge (

). The use of a solid line to depict bonds to asymmetric carbon atoms is meant to
indicate that all possible stereoisomers (e.g. specific enantiomers, racemic mixtures,
etc.) at that carbon atom are included. The use of either a solid or dotted wedge
to depict bonds to asymmetric carbon atoms is meant to indicate that the stereoisomer
shown is present. When present in racemic comounds, solid and dotted wedges are used
to define relative stereochemistry, rather than absolute stereochemistry. Racemic
compounds possessing such indicated relative stereochemistry are marked with (+/-).
For example, unless stated otherwise, it is intended that the compounds of of the
invention can exist as stereoisomers, which include include cis and trans isomers,
optical isomers such as R and S enantiomers, diastereomers, geometric isomers, rotational
isomers, and conformational isomers. The compounds of the the invention may exhibit
more than one type of isomerism; and mixtures thereof (such as racemates and diastereomeric
pairs). Also included are acid addition or base addition salts wherein the counterion
is optically active, for example, D-lactate or L-lysine, or racemic, for example,
DL-tartrate or DL-arginine.
[0021] When any racemate crystallizes, crystals of two different types are possible. The
first type is the racemic compound (true racemate) referred to above wherein one homogeneous
form of crystal is produced containing both enantiomers in equimolar amounts. The
second type is the racemic mixture or conglomerate wherein two forms of crystal are
produced in equimolar amounts each comprising a single enantiomer.
[0022] The present invention also includes isotopically-labeled compounds, which are identical
to those recited in Formulas I, Ia, Ib and Ic, but for the fact that one or more atoms
are replaced by an atom having an atomic mass or mass number different from the atomic
mass or mass number usually found in nature. Examples of isotopes that may be incorporated
into compounds of of the invention include isotopes of hydrogen, carbon, nitrogen,
oxygen, phosphorus, fluorine and chlorine, such as, but not limited to,
2H,
3H,
13C,
14C,
15N,
18O,
17O,
32P,
35S,
18F, and
36Cl. Certain isotopically-labeled compounds of compounds of of the invention for example
those into which radioactive isotopes such as
3H and
14C are incorporated, are useful in drug and/or substrate tissue distribution assays.
Tritiated, i.e.,
3H, and carbon-14, i.e.,
14C, isotopes are particularly preferred for their ease of preparation and detectability.
Further, substitution with heavier isotopes such as deuterium, i.e.,
2H, can afford certain therapeutic advantages resulting from greater metabolic stability,
for example increased
in vivo half-life or reduced dosage requirements and, hence, may be preferred in some circumstances.
Isotopically-labeled compounds of of the invention may generally be prepared by carrying
out the procedures disclosed in the Schemes and/or in the Examples and Preparations
below, by substituting an isotopically-labeled reagent for a non-isotopically-labeled
reagent.
[0023] The compounds of this invention may be used in the form of salts derived from inorganic
or organic acids. Depending on the particular compound, a salt of the compound may
be advantageous due to one or more of the salt's physical properties, such as enhanced
pharmaceutical stability in differing temperatures and humidities, or a desirable
solubility in water or oil. In some instances, a salt of a compound also may be used
as an aid in the isolation, purification, and/or resolution of the compound.
[0024] Where a salt is intended to be administered to a patient (as opposed to, for example,
being used in an in vitro context), the salt preferably is pharmaceutically acceptable.
The term "pharmaceutically acceptable salt" refers to a salt prepared by combining
a compound of formula I with an acid whose anion, or a base whose cation, is generally
considered suitable for human consumption. Pharmaceutically acceptable salts are particularly
useful as products of the methods of the present invention because of their greater
aqueous solubility relative to the parent compound.
[0025] Suitable pharmaceutically acceptable acid addition salts of the compounds of the
present invention when possible include those derived from inorganic acids, such as
hydrochloric, hydrobromic, hydrofluoric, boric, fluoroboric, phosphoric, metaphosphoric,
nitric, carbonic, sulfonic, and sulfuric acids, and organic acids such as acetic,
benzenesulfonic, benzoic, citric, ethanesulfonic, fumaric, gluconic, glycolic, isothionic,
lactic, lactobionic, maleic, malic, methanesulfonic, trifluoromethanesulfonic, succinic,
toluenesulfonic, tartaric, and trifluoroacetic acids. Suitable organic acids generally
include but are not limited to aliphatic, cycloaliphatic, aromatic, araliphatic, heterocyclic,
carboxylic, and sulfonic classes of organic acids.
[0026] Specific examples of suitable organic acids include but are not limited to acetate,
trifluoroacetate, formate, propionate, succinate, glycolate, gluconate, digluconate,
lactate, malate, tartaric acid, citrate, ascorbate, glucuronate, maleate, fumarate,
pyruvate, aspartate, glutamate, benzoate, anthranilic acid, stearate, salicylate,
p-hydroxybenzoate, phenylacetate, mandelate, embonate (pamoate), methanesulfonate,
ethanesulfonate, benzenesulfonate, pantothenate, toluenesulfonate, 2-hydroxyethanesulfonate,
sufanilate, cyclohexylaminosulfonate, algenic acid, β-hydroxybutyric acid, galactarate,
galacturonate, adipate, alginate, butyrate, camphorate, camphorsulfonate, cyclopentanepropionate,
dodecylsulfate, glycoheptanoate, glycerophosphate, heptanoate, hexanoate, nicotinate,
2-naphthalenesulfonate, oxalate, palmoate, pectinate, 3-phenylpropionate, picrate,
pivalate, thiocyanate, and undecanoate.
[0027] Furthermore, where the compounds of the invention carry an acidic moiety, suitable
pharmaceutically acceptable salts thereof may include alkali metal salts, i.e., sodium
or potassium salts; alkaline earth metal salts, e.g., calcium or magnesium salts;
and salts formed with suitable organic ligands, e.g., quaternary ammonium salts. In
another embodiment, base salts are formed from bases which form non-toxic salts, including
aluminum, arginine, benzathine, choline, diethylamine, diolamine, glycine, lysine,
meglumine, olamine, tromethamine and zinc salts.
[0028] Organic salts may be made from secondary, tertiary or quaternary amine salts, such
as tromethamine, diethylamine,
N,N'-dibenzylethylenediamine, chloroprocaine, choline, diethanolamine, ethylenediamine,
meglumine (
N-methylglucamine), and procaine. Basic nitrogen-containing groups may be quaternized
with agents such as lower alkyl (C
1-C
6) halides (e.g., methyl, ethyl, propyl, and butyl chlorides, bromides, and iodides),
dialkyl sulfates (i.e., dimethyl, diethyl, dibutyl, and diamyl sulfates), long chain
halides (i.e., decyl, lauryl, myristyl, and stearyl chlorides, bromides, and iodides),
arylalkyl halides (i.e., benzyl and phenethyl bromides), and others.
[0029] In one embodiment, hemisalts of acids and bases may also be formed, for example,
hemisulphate and hemicalcium salts.
[0030] Typically, a compound of the invention is administered in an amount effective to
treat a condition as described herein. The compounds of the invention are administered
by any suitable route in the form of a pharmaceutical composition adapted to such
a route, and in a dose effective for the treatment intended. Therapeutically effective
doses of the compounds required to treat the progress of the medical condition are
readily ascertained by one of ordinary skill in the art using preclinical and clinical
approaches familiar to the medicinal arts. The term "therapeutically effective amount"
as used herein refers to that amount of the compound being administered which will
relieve to some extent one or more of the symptoms of the disorder being treated.
[0031] The term "treating", as used herein, unless otherwise indicated, means reversing,
alleviating, inhibiting the progress of, or preventing the disorder or condition to
which such term applies, or one or more symptoms of such disorder or condition. The
term "treatment", as used herein, unless otherwise indicated, refers to the act of
treating as "treating" is defined immediately above. The term "treating" also includes
adjuvant and neo-adjuvant treatment of a subject.
Compounds
[0032] To further elucidate the compounds of the present invention, the following subgenuses
are described below.
[0033] Formula Ia depicted below is a subset of Formula I as depicted, wherein z is 1, and
R
5a, R
5b, R
6 and R
7 are each hydrogen. In Formula Ia X is a 5-membered heteroaryl selected from imidazolyl,
pyrazolyl, isothiazolyl, thiazolyl, isoxazolyl, oxazolyl or pyridyl; R
1 is selected from hydrogen, halogen, or C
1-C
3alkyl; y is 0 or 1; R
2a and R
2b are each independently hydrogen or C
1-C
3alkyl; R
4a and R
4b are each independently hydrogen or C
1-C
3alkyl; A is a C
3-C
6cycloalkyl selected from cyclobutyl, cyclopentyl or cyclohexyl, or A is a 5- to 6-membered
heterocycloalkyl selected from tetrahydrofuranyl, tetrahydropyranyl or dihydroisoxazolyl,
wherein the cyclobutyl, cyclopentyl cyclohexyl, tetrahydrofuranyl, tetrahydropyranyl
or dihydroisoxazolyl are optionally substituted with one to three substituents each
independently selected from halogen or C
1-C
3alkyl; and R
3 is -(C(R
10)
2)
t-(C
6-C
10aryl), -(C(R
10)
2)
t-(5- to 10-membered heteroaryl) or -(C(R
10)
2)
t-OR
12; wherein said aryl is optionally substituted with one to five substituents each independently
selected from fluoro, chloro, -CF
3,-SF
5, -OCF
3, -OCHF
2, -OCH
3, -CF
2CF
3, -CF
2CH
3; each R
12 is independently C
6-C
10aryl or a 5- to 10-membered heteroaryl, wherein said aryl or heteroaryl is optionally
substituted with one to five fluoro, chloro, CF
3, methyl, or isopropyl; and t is 0 or 1.

[0034] In certain embodiments of the invention, in Formula Ia as depicted above, x is imidazolyl;
R
1 is methyl; y is 0; R
2a and R
2b are each independently hydrogen; R
4a and R
4b are each independently hydrogen; A is cyclobutyl; and R
3 is (6,7-difluoronaphthylen-1-yl)oxy.
[0035] In certain other embodiment of the invention, in Formula Ia as depicted above, x
is imidazolyl; R
1 is methyl; y is 1; one of R
2a or R
2b is hydrogen and the other is methyl; R
4a and R
4b are each independently hydrogen; A is tetrahydrofuranyl; and R
3 is 5-trifluoromethylthiophen-2-yl.
[0036] Formula Ib depicted below is a subset of Formula I as depicted wherein x is imidazolyl,
R
3 is phenyl, z is 1, and R
5a, R
5b, R
6 and R
7 are each hydrogen. In Formula Ib, as depicted below, R
1 is selected from hydrogen, halogen, or C
1-C
3alkyl; y is 0 or 1; R
2a and R
2b are independently hydrogen or C
1-C
3alkyl; R
4a and R
4b are each independently hydrogen or C
1-C
3alkyl; A is a C
3-C
6cycloalkyl selected from cyclopentyl or cyclohexyl, or A is a 5- to 6-membered heterocycloalkyl
selected from tetrahydrofuranyl, tetrahydropyranyl or dihydroisoxazolyl, wherein the
cyclopentyl, cyclohexyl, tetrahydrofuranyl, tetrahydropyranyl or dihydroisoxazolyl
are optionally substituted with one to three substituents each independently selected
from halogen or C
1-C
3alkyl; m is 1, 2, or 3; and each R
11 is independently selected from hydrogen, fluoro, chloro, -CF
3, -SF
5, -OCF
3, -OCHF
2, -OCH
3, -CF
2CF
3, -CF
2CH
3, or cyclopropyl.

[0037] In certain embodiments of the invention, in Formula Ib as depicted above, R
1 is methyl; y is 1; R
2a and R
2b are independently hydrogen; R
4a and R
4b are each independently hydrogen; A is tetrahydropyranyl; m is 1; and R
11 is CF
3. In certain embodiments the CF
3 substituent is attached to the phenyl ring at the para position.
[0038] In certain embodiments of the invention, in Formula Ib as depicted above, R
1 is methyl; y is 1; R
2a and R
2b are independently hydrogen; R
4a and R
4b are each independently hydrogen; A is cyclohexyl; m is 1 and R
11 is chloro. In certain embodiments the chloro substituent is attached to the phenyl
ring at the para position.
[0039] Formula Ic depicted below is a subset of Formula I as depicted wherein x is imidazolyl,
R
3 is phenyl, A is tetrahydrofuranyl, z is 1, and R
5a, R
5b, R
6 and R
7 are each independently hydrogen. In Formula Ic, as depicted below, R
1 is selected from hydrogen, halogen, or C
1-C
3alkyl; R
2a and R
2b are independently hydrogen or methyl; R
4a and R
4b are each independently hydrogen or C
1-C
3alkyl; the tetrahydrofuranyl moiety is optionally substituted with one to three substituents
each independently selected from halogen or C
1-C
3alkyl; and R
11 is selected from hydrogen, fluoro, chloro, -CF
3, -SF
5, -OCF
3, -OCHF
2, -OCH
3, -CF
2CF
3, -CF
2CH
3, or cyclopropyl.

[0040] In certain other embodiments of the invention, in Formula Ic as depicted above, R
1 is methyl; R
2a and R
2b are both hydrogen; one of R
4a and R
4b is hydrogen and the other is methyl; and R
11 is -CF
3. In certain embodiments the -CF
3 substituent on the phenyl ring is attached at the para position.
[0041] In certain other embodiments of the invention, in Formula Ic as depicted above, R
1 is methyl; R
2a and R
2b are both hydrogen; R
4a and R
4b are both hydrogen; the tetrahydrofuranyl moiety is substituted with a single fluoro
or methyl substituent; and R
11 is -CF
3. In certain embodiments the -CF
3 substituent on the phenyl ring is attached at the para position.
[0042] In certain other embodiments of the invention, in Formula Ic as depicted above, R
1 is methyl; R
2a and R
2b are both hydrogen; R
4a and R
4b are both hydrogen; and R
11 is fluoro, chloro, -CF
3, -SF
5, or -OCH
3.
[0043] In certain other embodiments of the invention, in Formula Ic as depicted above, R
1 is methyl; one of R
2a and R
2b is hydrogen and the other is methyl; R
2 is hydrogen; R
4a and R
4b are both hydrogen; and R
11 is fluoro, chloro, -CF
3, -OCF
3, -OCHF
2, or-OCH
3.
[0044] Formula Id depicted below is a subset of Formula I as depicted wherein x is imidazolyl,
A is tetrahydrofuranyl, z is 1, and R
5a, R
5b, R
6 and R
7 are each independently hydrogen. In Formula Id depicted below, R
2 is hydrogen or methyl; R
3 is C
6-C
10aryl or a 5- to 6-membered heteroaryl, wherein said aryl or heteroaryl is optionally
substituted with one to three R
11, wherein each R
11 is independently selected from the group consisting of fluoro, chloro, -CF
3, -SF
5, -OCH
3, -OCF
3, and -OCHF
2.

[0045] In certain embodiments of Formual Id is as depicted above R
3 is phenyl optionally substituted with one to three R
11 substituents independently selected from fluoro, chloro, -CF
3, -SF
5, -OCH
3, -OCF
3, and -OCHF
2.
[0046] In certain other embodiments of Formual Id is as depicted above R
3 is thiophenyl optionally substituted with one to three R
11 substituents independently selected from fluoro, chloro, -CF
3, -SF
5, -OCH
3, -OCF
3, and -OCHF
2.
Pharmacology
[0047] Alheimer's Disease (AD) research indicates that the disease is associated with the
build-up of plaques in variable shapes and sizes in the brain. The primary plaques
associated with AD are amyloid beta protein (Aβ). Aβ is produced when the amyloid
protein precursor (APP) undergoes successive proteolysis by β- and γ- secretase (
Haas, et al., "Trafficking and proteolytic processing of APP", Cold Spring Harbor
Perspect Med., 2011). γ- Secretase is a large complex of four different integral proteins, one of which
has been identified as the catalytic component that comprises an unusual membrane-embedded
component (
De Strooper, Bart, et al, "Presenilins and γ- Secretase: Structure, Function, and
Role in Alzheimer's Disease"Cold Spring Harb Perspect Med 2012;2:a006304). The catalytic components known as presenilins were first discovered as sites of
missense mutations responsible for early-onset Alzheimer disease (AD). The encoded
multipass membrane proteins were subsequently found to be the catalytic components
of γ-secretases, membrane-embedded aspartyl protease complexes responsible for generating
the carboxyl terminus of the amyloid b-protein (Aβ) from the amyloid protein precursor
(APP). (De Strooper, Bart, et al, 2012). Accordingly, targeting γ- secretase proteins
as a potential target for drug discovery in the treatment of Alzheimer's disease has
become a main focus of Alzheimer's disease research.
[0048] The compounds of the present invention are γ- secretase modulators and can be used
for treating conditions or diseases of the central nervous system identified to have
enhanced gamma secretase activity, such as Niemann-Pick type C; neurological disorders
(such as migraine; epilepsy; Alzheimer's disease; Parkinson's disease; brain injury;
stroke; cerebrovascular diseases (including cerebral arteriosclerosis, cerebral amyloid
angiopathy, hereditary cerebral hemorrhage, and brain hypoxia-ischemia); cognitive
disorders (including amnesia, senile dementia, HIV-associated dementia, Alzheimer's
disease, Huntington's disease, Lewy body dementia, vascular dementia, drug-related
dementia, tardive dyskinesia, myoclonus, dystonia, delirium, Pick's disease, Creutzfeldt-Jacob
disease, HIV disease, Gilles de la Tourette's syndrome, epilepsy, muscular spasms
and disorders associated with muscular spasticity or weakness including tremors, and
mild cognitive impairment); mental deficiency (including spasticity, Down syndrome
and fragile X syndrome); sleep disorders (including hypersomnia, circadian rhythm
sleep disorder, insomnia, parasomnia, and sleep deprivation) and psychiatric disorders
such as anxiety (including acute stress disorder, generalized anxiety disorder, social
anxiety disorder, panic disorder, post-traumatic stress disorder, agoraphobia, and
obsessive-compulsive disorder); factitious disorders (including acute hallucinatory
mania); impulse control disorders (including compulsive gambling and intermittent
explosive disorder); mood disorders (including bipolar I disorder, bipolar II disorder,
mania, mixed affective state, major depression, chronic depression, seasonal depression,
psychotic depression, seasonal depression, premenstrual syndrome (PMS) premenstrual
dysphoric disorder (PDD), and postpartum depression); psychomotor disorders; psychotic
disorders (including schizophrenia, schizoaffective disorder, schizophreniform, and
delusional disorder); drug dependence (including narcotic dependence, alcoholism,
amphetamine dependence, cocaine addiction, nicotine dependence, and drug withdrawal
syndrome); eating disorders (including anorexia, bulimia, binge eating disorder, hyperphagia,
obesity, compulsive eating disorders and pagophagia); sexual dysfunction disorders,
urinary incontinence; neuronal damage disorders (including ocular damage, retinopathy
or macular degeneration of the eye, tinnitus, hearing impairment and loss, and brain
edema) and pediatric psychiatric disorders (including attention deficit disorder,
attention deficit/hyperactive disorder, conduct disorder, and autism) in a mammal,
preferably a human, comprising administering to said mammal a therapeutically effective
amount of a compound of Formula I, Formula Ia, Formula Ib, and Formula Ic or a pharmaceutically
acceptable salt thereof.
[0049] In certain embodiments, the compounds of the present invention can be utilized for
treating a neurological disorder (such as migraine; epilepsy; Alzheimer's disease;
Parkinson's disease; Niemann Pick type C; brain injury; stroke; cerebrovascular disease;
cognitive disorder; sleep disorder) or a psychiatric disorder (such as anxiety; factitious
disorder; impulse control disorder; mood disorder; psychomotor disorder; psychotic
disorder; drug dependence; eating disorder; and pediatric psychiatric disorder) in
a mammal, preferably a human, comprising administering to said mammal a therapeutically
effective amount of a compound of Formula I or pharmaceutically acceptable salt thereof.
[0050] Compounds of the present invention may also be useful for improving memory (both
short term and long term) and learning ability.
Formulations
[0052] The compounds of the invention may be administered orally. Oral administration may
involve swallowing, so that the compound enters the gastrointestinal tract, or buccal
or sublingual administration may be employed by which the compound enters the blood
stream directly from the mouth.
[0053] In another embodiment, the compounds of the invention may also be administered directly
into the blood stream, into muscle, or into an internal organ. Suitable means for
parenteral administration include intravenous, intraarterial, intraperitoneal, intrathecal,
intraventricular, intraurethral, intrasternal, intracranial, intramuscular and subcutaneous.
Suitable devices for parenteral administration include needle (including microneedle)
injectors, needle-free injectors and infusion techniques.
[0054] In another embodiment, the compounds of the invention may also be administered topically
to the skin or mucosa, that is, dermally or transdermally. In another embodiment,
the compounds of the invention can also be administered intranasally or by inhalation.
In another embodiment, the compounds of the invention may be administered rectally
or vaginally. In another embodiment, the compounds of the invention may also be administered
directly to the eye or ear.
[0055] The dosage regimen for the compounds and/or compositions containing the compounds
is based on a variety of factors, including the type, age, weight, sex and medical
condition of the patient; the severity of the condition; the route of administration;
and the activity of the particular compound employed. Thus the dosage regimen may
vary widely. Dosage levels of the order from about 0.01 mg to about 100 mg per kilogram
of body weight per day are useful in the treatment of the above-indicated conditions.
In one embodiment, the total daily dose of a compound of the invention (administered
in single or divided doses) is typically from about 0.01 to about 100 mg/kg. In another
embodiment, the total daily dose of the compound of the invention is from about 0.1
to about 50 mg/kg, and in another embodiment, from about 0.5 to about 30 mg/kg (i.e.,
mg compound of the invention per kg body weight). In one embodiment, dosing is from
0.01 to 10 mg/kg/day. In another embodiment, dosing is from 0.1 to 1.0 mg/kg/day.
Dosage unit compositions may contain such amounts or submultiples thereof to make
up the daily dose. In many instances, the administration of the compound will be repeated
a plurality of times in a day (typically no greater than 4 times). Multiple doses
per day typically may be used to increase the total daily dose, if desired.
[0056] For oral administration, the compositions may be provided in the form of tablets
containing 0.01, 0.05, 0.1, 0.5, 1.0, 2.5, 5.0, 10.0, 15.0, 25.0, 50.0, 75.0, 100,
125, 150, 175, 200, 250 and 500 milligrams of the active ingredient for the symptomatic
adjustment of the dosage to the patient. A medicament typically contains from about
0.01 mg to about 500 mg of the active ingredient, or in another embodiment, from about
1 mg to about 100 mg of active ingredient. Intravenously, doses may range from about
0.1 to about 10 mg/kg/minute during a constant rate infusion.
[0057] Suitable subjects according to the present invention include mammalian subjects.
Mammals according to the present invention include, but are not limited to, canine,
feline, bovine, caprine, equine, ovine, porcine, rodents, lagomorphs, primates, and
the like, and encompass mammals in utero. In one embodiment, humans are suitable subjects.
Human subjects may be of either gender and at any stage of development.
[0058] In another embodiment, the invention comprises one or more compounds of the invention
for use in the treatment of the conditions recited herein.
[0059] For the treatment of the conditions referred to above, the compounds of the invention
can be administered as compound per se. Alternatively, pharmaceutically acceptable
salts are suitable for medical applications because of their greater aqueous solubility
relative to the parent compound.
[0060] In another embodiment, the present invention comprises pharmaceutical compositions.
Such pharmaceutical compositions comprise a compound of the invention presented with
a pharmaceutically acceptable carrier. The carrier can be a solid, a liquid, or both,
and may be formulated with the compound as a unit-dose composition, for example, a
tablet, which can contain from 0.05% to 95% by weight of the active compounds. A compound
of the invention may be coupled with suitable polymers as targetable drug carriers.
Other pharmacologically active substances can also be present.
[0061] The compounds of the present invention may be administered by any suitable route,
preferably in the form of a pharmaceutical composition adapted to such a route, and
in a dose effective for the treatment intended. The active compounds and compositions,
for example, may be administered orally, rectally, parenterally, or topically.
[0062] Oral administration of a solid dose form may be, for example, presented in discrete
units, such as hard or soft capsules, pills, cachets, lozenges, or tablets, each containing
a predetermined amount of at least one compound of the present invention. In another
embodiment, the oral administration may be in a powder or granule form. In another
embodiment, the oral dose form is sub-lingual, such as, for example, a lozenge. In
such solid dosage forms, the compounds of formula I are ordinarily combined with one
or more adjuvants. Such capsules or tablets may contain a controlled-release formulation.
In the case of capsules, tablets, and pills, the dosage forms also may comprise buffering
agents or may be prepared with enteric coatings.
[0063] In another embodiment, oral administration may be in a liquid dose form. Liquid dosage
forms for oral administration include, for example, pharmaceutically acceptable emulsions,
solutions, suspensions, syrups, and elixirs containing inert diluents commonly used
in the art (i.e., water). Such compositions also may comprise adjuvants, such as wetting,
emulsifying, suspending, flavoring (e.g., sweetening), and/or perfuming agents.
[0064] In another embodiment, the present invention comprises a parenteral dose form. "Parenteral
administration" includes, for example, subcutaneous injections, intravenous injections,
intraperitoneal injections, intramuscular injections, intrasternal injections, and
infusion. Injectable preparations (i.e., sterile injectable aqueous or oleaginous
suspensions) may be formulated according to the known art using suitable dispersing,
wetting, and/or suspending agents.
[0065] In another embodiment, the present invention comprises a topical dose form. "Topical
administration" includes, for example, transdermal administration, such as via transdermal
patches or iontophoresis devices, intraocular administration, or intranasal or inhalation
administration. Compositions for topical administration also include, for example,
topical gels, sprays, ointments, and creams. A topical formulation may include a compound
which enhances absorption or penetration of the active ingredient through the skin
or other affected areas. When the compounds of this invention are administered by
a transdermal device, administration will be accomplished using a patch either of
the reservoir and porous membrane type or of a solid matrix variety. Typical formulations
for this purpose include gels, hydrogels, lotions, solutions, creams, ointments, dusting
powders, dressings, foams, films, skin patches, wafers, implants, sponges, fibres,
bandages and microemulsions. Liposomes may also be used. Typical carriers include
alcohol, water, mineral oil, liquid petrolatum, white petrolatum, glycerin, polyethylene
glycol and propylene glycol. Penetration enhancers may be incorporated - see, for
example,
Finnin and Morgan, J. Pharm. Sci., 88 (10), 955-958 (1999).
[0066] Formulations suitable for topical administration to the eye include, for example,
eye drops wherein the compound of this invention is dissolved or suspended in a suitable
carrier. A typical formulation suitable for ocular or aural administration may be
in the form of drops of a micronised suspension or solution in isotonic, pH-adjusted,
sterile saline. Other formulations suitable for ocular and aural administration include
ointments, biodegradable (i.e., absorbable gel sponges, collagen) and non-biodegradable
(i.e., silicone) implants, wafers, lenses and particulate or vesicular systems, such
as niosomes or liposomes. A polymer such as crossed-linked polyacrylic acid, polyvinyl
alcohol, hyaluronic acid, a cellulosic polymer, for example, hydroxypropylmethylcellulose,
hydroxyethylcellulose, or methylcellulose, or a heteropolysaccharide polymer, for
example, gelan gum, may be incorporated together with a preservative, such as benzalkonium
chloride. Such formulations may also be delivered by iontophoresis.
[0067] For intranasal administration or administration by inhalation, the active compounds
of the invention are conveniently delivered in the form of a solution or suspension
from a pump spray container that is squeezed or pumped by the patient or as an aerosol
spray presentation from a pressurized container or a nebulizer, with the use of a
suitable propellant. Formulations suitable for intranasal administration are typically
administered in the form of a dry powder (either alone; as a mixture, for example,
in a dry blend with lactose; or as a mixed component particle, for example, mixed
with phospholipids, such as phosphatidylcholine) from a dry powder inhaler or as an
aerosol spray from a pressurised container, pump, spray, atomiser (preferably an atomiser
using electrohydrodynamics to produce a fine mist), or nebuliser, with or without
the use of a suitable propellant, such as 1,1,1,2-tetrafluoroethane or 1,1,1,2,3,3,3-heptafluoropropane.
For intranasal use, the powder may comprise a bioadhesive agent, for example, chitosan
or cyclodextrin.
[0068] In another embodiment, the present invention comprises a rectal dose form. Such rectal
dose form may be in the form of, for example, a suppository. Cocoa butter is a traditional
suppository base, but various alternatives may be used as appropriate.
[0069] Other carrier materials and modes of administration known in the pharmaceutical art
may also be used. Pharmaceutical compositions of the invention may be prepared by
any of the well-known techniques of pharmacy, such as effective formulation and administration
procedures. The above considerations in regard to effective formulations and administration
procedures are well known in the art and are described in standard textbooks. Formulation
of drugs is discussed in, for example,
Hoover, John E., Remington's Pharmaceutical Sciences, Mack Publishing Co., Easton,
Pennsylvania, 1975;
Liberman et al., Eds., Pharmaceutical Dosage Forms, Marcel Decker, New York, N.Y.,
1980; and
Kibbe et al., Eds., Handbook of Pharmaceutical Excipients (3rd Ed.), American Pharmaceutical
Association, Washington, 1999.
[0070] The compounds of the present invention can be used, alone or in combination with
other therapeutic agents, in the treatment of various conditions or disease states.
The compound(s) of the present invention and other therapeutic agent(s) may be administered
simultaneously (either in the same dosage form or in separate dosage forms) or sequentially.
An exemplary therapeutic agent may be, for example, a metabotropic glutamate receptor
agonist.
[0071] The administration of two or more compounds "in combination" means that the two compounds
are administered closely enough in time that the presence of one alters the biological
effects of the other. The two or more compounds may be administered simultaneously,
concurrently or sequentially. Additionally, simultaneous administration may be carried
out by mixing the compounds prior to administration or by administering the compounds
at the same point in time but at different anatomic sites or using different routes
of administration.
[0072] The phrases "concurrent administration," "co-administration," "simultaneous administration,"
and "administered simultaneously" mean that the compounds are administered in combination.
[0073] The present invention includes the use of a combination of a γ-secretase modulator
compound as provided in Formula I and one or more additional pharmaceutically active
agent(s). If a combination of active agents is administered, then they may be administered
sequentially or simultaneously, in separate dosage forms or combined in a single dosage
form. Accordingly, the present invention also includes pharmaceutical compositions
comprising an amount of: (a) a first agent comprising a compound of Formula I or a
pharmaceutically acceptable salt of the compound; (b) a second pharmaceutically active
agent; and (c) a pharmaceutically acceptable carrier, vehicle or diluent.
[0074] Various pharmaceutically active agents may be selected for use in conjunction with
the compounds of Formula I, depending on the disease, disorder, or condition to be
treated. Pharmaceutically active agents that may be used in combination with the compositions
of the present invention include, without limitation:
- (i) acetylcholinesterase inhibitors, such as donepezil hydrochloride (ARICEPT, MEMAC),
physostigmine salicylate (ANTILIRIUM), physostigmine sulfate (ESERINE), metrifonate,
neostigmine, ganstigmine, pyridostigmine (MESTINON), ambenonium (MYTELASE), demarcarium,
Debio 9902 (also known as ZT-1; Debiopharm), rivastigmine (EXELON), ladostigil, NP-0361,
galantamine hydrobromide (RAZADYNE, RIMINYL, NIVALIN), tacrine (COGNEX), tolserine,
velnacrine maleate, memoquin, huperzine A (HUP-A; NeuroHitech), phenserine, edrophonium
(ENLON, TENSILON), and INM-176;
- (ii) amyloid-ß (or fragments thereof), such as Aß1-15 conjugated to pan HLA DR-binding epitope (PADRE), ACC-001 (Elan/Wyeth), ACI-01, ACI-24,
AN-1792, Affitope AD-01, CAD106, and V-950;
- (iii) antibodies to amyloid-ß (or fragments thereof), such as ponezumab, solanezumab,
bapineuzumab (also known as AAB-001), AAB-002 (Wyeth/Elan), ACI-01-Ab7, BAN-2401,
intravenous Ig (GAMMAGARD), LY2062430 (humanized m266; Lilly), R1450 (Roche), ACU-5A5,
huC091, and those disclosed in International Patent Publication Nos WO04/032868, WO05/025616, WO06/036291, WO06/069081, WO06/118959, in US Patent Publication Nos US2003/0073655, US2004/0192898, US2005/0048049, US2005/0019328, in European Patent Publication Nos EP0994728 and 1257584, and in US Patent No 5,750,349;
- (iv) amyloid-lowering or -inhibiting agents (including those that reduce amyloid production,
accumulation and fibrillization) such as dimebon, davunetide, eprodisate, leuprolide,
SK-PC-B70M, celecoxib, lovastatin, anapsos, oxiracetam, pramiracetam, varenicline,
nicergoline, colostrinin, bisnorcymserine (also known as BNC), NIC5-15 (Humanetics),
E-2012 (Eisai), pioglitazone, clioquinol (also known as PBT1), PBT2 (Prana Biotechnology),
flurbiprofen (ANSAID, FROBEN) and its R-enantiomer tarenflurbil (FLURIZAN), nitroflurbiprofen,
fenoprofen (FENOPRON, NALFON), ibuprofen (ADVIL, MOTRIN, NUROFEN), ibuprofen lysinate,
meclofenamic acid, meclofenamate sodium (MECLOMEN), indomethacin (INDOCIN), diclofenac
sodium (VOLTAREN), diclofenac potassium, sulindac (CLINORIL), sulindac sulfide, diflunisal
(DOLOBID), naproxen (NAPROSYN), naproxen sodium (ANAPROX, ALEVE), ARC031 (Archer Pharmaceuticals),
CAD-106 (Cytos), LY450139 (Lilly), insulin-degrading enzyme (also known as insulysin),
the gingko biloba extract EGb-761 (ROKAN, TEBONIN), tramiprosate (CEREBRIL, ALZHEMED),
eprodisate (FIBRILLEX, KIACTA), compound W (3,5-bis(4-nitrophenoxy)benzoic acid),
NGX-96992, neprilysin (also known as neutral endopeptidase (NEP)), scyllo-inositol
(also known as scyllitol), atorvastatin (LIPITOR), simvastatin (ZOCOR), KLVFF-(EEX)3,
SKF-74652, ibutamoren mesylate, BACE inhibitors such as ASP-1702, SCH-745966, JNJ-715754,
AMG-0683, AZ-12304146, BMS-782450, GSK-188909, NB-533, E2609 and TTP-854; Gamma Secretase
Modulators such as ELND-007; and RAGE (receptor for advanced glycation end-products)
inhibitors, such as TTP488 (Transtech) and TTP4000 (Transtech), and those disclosed
in US Patent No 7,285,293, including PTI-777;
- (v) alpha-adrenergic receptor agonists, such as guanfacine (INTUNIV, TENEX), clonidine
(CATAPRES), metaraminol (ARAMINE), methyldopa (ALDOMET, DOPAMET, NOVOMEDOPA), tizanidine
(ZANAFLEX), phenylephrine (also known as neosynephrine), methoxamine, cirazoline,
guanfacine (INTUNIV), lofexidine, xylazine, modafinil (PROVIGIL), adrafinil, and armodafinil
(NUVIGIL);
- (vi) beta-adrenergic receptor blocking agents (beta blockers), such as carteolol,
esmolol (BREVIBLOC), labetalol (NORMODYNE, TRANDATE), oxprenolol (LARACOR, TRASACOR),
pindolol (VISKEN), propanolol (INDERAL), sotalol (BETAPACE, SOTALEX, SOTACOR), timolol
(BLOCADREN, TIMOPTIC), acebutolol (SECTRAL, PRENT), nadolol (CORGARD), metoprolol
tartrate (LOPRESSOR), metoprolol succinate (TOPROL-XL), atenolol (TENORMIN), butoxamine,
and SR 59230A (Sanofi);
- (vii) anticholinergics, such as amitriptyline (ELAVIL, ENDEP), butriptyline, benztropine
mesylate (COGENTIN), trihexyphenidyl (ARTANE), diphenhydramine (BENADRYL), orphenadrine
(NORFLEX), hyoscyamine, atropine (ATROPEN), scopolamine (TRANSDERM-SCOP), scopolamine
methylbromide (PARMINE), dicycloverine (BENTYL, BYCLOMINE, DIBENT, DILOMINE), tolterodine
(DETROL), oxybutynin (DITROPAN, LYRINEL XL, OXYTROL), penthienate bromide, propantheline
(PRO-BANTHINE), cyclizine, imipramine hydrochloride (TOFRANIL), imipramine maleate
(SURMONTIL), lofepramine, desipramine (NORPRAMIN), doxepin (SINEQUAN, ZONALON), trimipramine
(SURMONTIL), and glycopyrrolate (ROBINUL);
- (viii) anticonvulsants, such as carbamazepine (TEGRETOL, CARBATROL), oxcarbazepine
(TRILEPTAL), phenytoin sodium (PHENYTEK), fosphenytoin (CEREBYX, PRODILANTIN), divalproex
sodium (DEPAKOTE), gabapentin (NEURONTIN), pregabalin (LYRICA), topirimate (TOPAMAX),
valproic acid (DEPAKENE), valproate sodium (DEPACON), 1-benzyl-5-bromouracil, progabide,
beclamide, zonisamide (TRERIEF, EXCEGRAN), CP-465022, retigabine, talampanel, and
primidone (MYSOLINE);
- (ix) antipsychotics, such as lurasidone (LATUDA, also known as SM-13496; Dainippon
Sumitomo), aripiprazole (ABILIFY), chlorpromazine (THORAZINE), haloperidol (HALDOL),
iloperidone (FANAPTA), flupentixol decanoate (DEPIXOL, FLUANXOL), reserpine (SERPLAN),
pimozide (ORAP), fluphenazine decanoate, fluphenazine hydrochloride, prochlorperazine
(COMPRO), asenapine (SAPHRIS), loxapine (LOXITANE), molindone (MOBAN), perphenazine,
thioridazine, thiothixine, trifluoperazine (STELAZINE), ramelteon, clozapine (CLOZARIL),
norclozapine (ACP-104), risperidone (RISPERDAL), paliperidone (INVEGA), melperone,
olanzapine (ZYPREXA), quetiapine (SEROQUEL), talnetant, amisulpride, ziprasidone (GEODON),
blonanserin (LONASEN), and ACP-103 (Acadia Pharmaceuticals);
- (x) calcium channel blockers such as lomerizine, ziconotide, nilvadipine (ESCOR, NIVADIL),
diperdipine, amlodipine (NORVASC, ISTIN, AMLODIN), felodipine (PLENDIL), nicardipine
(CARDENE), nifedipine (ADALAT, PROCARDIA), MEM 1003 and its parent compound nimodipine
(NIMOTOP), nisoldipine (SULAR), nitrendipine, lacidipine (LACIPIL, MOTENS), lercanidipine
(ZANIDIP), lifarizine, diltiazem (CARDIZEM), verapamil (CALAN, VERELAN), AR-R 18565
(AstraZeneca), and enecadin;
- (xi) catechol O-methyltransferase (COMT) inhibitors, such as nitecapone, tolcapone
(TASMAR), entacapone (COMTAN), and tropolone;
- (xii) central nervous system stimulants, such as atomoxetine, reboxetine, yohimbine,
caffeine, phenmetrazine, phendimetrazine, pemoline, fencamfamine (GLUCOENERGAN, REACTIVAN),
fenethylline (CAPTAGON), pipradol (MERETRAN), deanol (also known as dimethylaminoethanol),
methylphenidate (DAYTRANA), methylphenidate hydrochloride (RITALIN), dexmethylphenidate
(FOCALIN), amphetamine (alone or in combination with other CNS stimulants, e.g. ADDERALL
(amphetamine aspartate, amphetamine sulfate, dextroamphetamine saccharate, and dextroamphetamine
sulfate)), dextroamphetamine sulfate (DEXEDRINE, DEXTROSTAT), methamphetamine (DESOXYN),
lisdexamfetamine (VYVANSE), and benzphetamine (DIDREX);
- (xiii) corticosteroids, such as prednisone (STERAPRED, DELTASONE), prednisolone (PRELONE),
predisolone acetate (OMNIPRED, PRED MILD, PRED FORTE), prednisolone sodum phosphate
(ORAPRED ODT), methylprednisolone (MEDROL); methylprednisolone acetate (DEPO-MEDROL),
and methylprednisolone sodium succinate (A-METHAPRED, SOLU-MEDROL);
- (xiv) dopamine receptor agonists, such as apomorphine (APOKYN), bromocriptine (PARLODEL),
cabergoline (DOSTINEX), dihydrexidine, dihydroergocryptine, fenoldopam (CORLOPAM),
lisuride (DOPERGIN), terguride spergolide (PERMAX), piribedil (TRIVASTAL, TRASTAL),
pramipexole (MIRAPEX), quinpirole, ropinirole (REQUIP), rotigotine (NEUPRO), SKF-82958
(GlaxoSmithKline), cariprazine, pardoprunox and sarizotan;
- (xv) dopamine receptor antagonists, such as chlorpromazine, fluphenazine, haloperidol,
loxzpine, resperidone, thioridazine, thiothixene, trifluoperazine, tetrabenazine (NITOMAN,
XENAZINE), 7-hydroxyamoxapine, droperidol (INAPSINE, DRIDOL, DROPLETAN), domperidone
(MOTILIUM), L-741742, L-745870, raclopride, SB-277011A, SCH-23390, ecopipam, SKF-83566,
and metoclopramide (REGLAN);
- (xvi) dopamine reuptake inhibitors such as bupropion, safinamide, nomifensine maleate
(MERITAL), vanoxerine (also known as GBR-12909) and its decanoate ester DBL-583, and
amineptine;
- (xvii) gamma-amino-butyric acid (GABA) receptor agonists, such as baclofen (LIORESAL,
KEMSTRO), siclofen, pentobarbital (NEMBUTAL), progabide (GABRENE), and clomethiazole;
- (xviii) histamine 3 (H3) antagonists such as ciproxifan, tiprolisant, S-38093, irdabisant,
pitolisant, GSK-239512, GSK-207040, JNJ-5207852, JNJ-17216498, HPP-404, SAR-110894,
trans-3-fluoro-3-(3-fluoro-4-pyrrolidin-1-ylmethyl-phenyl)-cyclobutane carboxylic
acid ethylamide (PF-3654746 and those disclosed in US Patent Publication Nos US2005-0043354, US2005-0267095, US2005-0256135, US2008-0096955, US2007-1079175, and US2008-0176925; International Patent Publication Nos WO2006/136924, WO2007/063385, WO2007/069053, WO2007/088450, WO2007/099423, WO2007/105053, WO2007/138431, and WO2007/088462; and US Patent No 7,115,600);
- (xix) immunomodulators such as glatiramer acetate (also known as copolymer-1; COPAXONE),
MBP-8298 (synthetic myelin basic protein peptide), dimethyl fumarate, fingolimod (also
known as FTY720), roquinimex (LINOMIDE), laquinimod (also known as ABR-215062 and
SAIK-MS), ABT-874 (human anti-IL-12 antibody; Abbott), rituximab (RITUXAN), alemtuzumab
(CAMPATH), daclizumab (ZENAPAX), and natalizumab (TYSABRI);
- (xx) immunosuppressants such as methotrexate (TREXALL, RHEUMATREX), mitoxantrone (NOVANTRONE),
mycophenolate mofetil (CELLCEPT), mycophenolate sodium (MYFORTIC), azathioprine (AZASAN,
IMURAN), mercaptopurine (PURI-NETHOL), cyclophosphamide (NEOSAR, CYTOXAN), chlorambucil
(LEUKERAN), cladribine (LEUSTATIN, MYLINAX), alpha-fetoprotein, etanercept (ENBREL),
and 4-benzyloxy-5-((5-undecyl-2H-pyrrol-2-ylidene)methyl)-2,2'-bi-1 H-pyrrole (also
known as PNU-156804);
- (xxi) interferons, including interferon beta-1a (AVONEX, REBIF) and interferon beta-1
b (BETASERON, BETAFERON);
- (xxii) levodopa (or its methyl or ethyl ester), alone or in combination with a DOPA
decarboxylase inhibitor (e.g. carbidopa (SINEMET, CARBILEV, PARCOPA), benserazide
(MADOPAR), α-methyldopa, monofluromethyldopa, difluoromethyldopa, brocresine, or m-hydroxybenzylhydrazine);
- (xxiii) N-methyl-D-aspartate (NMDA) receptor antagonists, such as memantine (NAMENDA, AXURA,
EBIXA), amantadine (SYMMETREL), acamprosate (CAMPRAL), besonprodil, ketamine (KETALAR),
delucemine, dexanabinol, dexefaroxan, dextromethorphan, dextrorphan, traxoprodil,
CP-283097, himantane, idantadol, ipenoxazone, L-701252 (Merck), lancicemine, levorphanol
(DROMORAN), LY-233536 and LY-235959 (both Lilly), methadone, (DOLOPHINE), neramexane,
perzinfotel, phencyclidine, tianeptine (STABLON), dizocilpine (also known as MK-801),
EAB-318 (Wyeth), ibogaine, voacangine, tiletamine, riluzole (RILUTEK), aptiganel (CERESOTAT),
gavestinel, and remacimide;
- (xxiv) monoamine oxidase (MAO) inhibitors, such as selegiline (EMSAM), selegiline
hydrochloride (I-deprenyl, ELDEPRYL, ZELAPAR), dimethylselegilene, brofaromine, phenelzine
(NARDIL), tranylcypromine (PARNATE), moclobemide (AURORIX, MANERIX), befloxatone,
safinamide, isocarboxazid (MARPLAN), nialamide (NIAMID), rasagiline (AZILECT), iproniazide
(MARSILID, IPROZID, IPRONID), CHF-3381 (Chiesi Farmaceutici), iproclozide, toloxatone
(HUMORYL, PERENUM), bifemelane, desoxypeganine, harmine (also known as telepathine
or banasterine), harmaline, linezolid (ZYVOX, ZYVOXID), and pargyline (EUDATIN, SUPIRDYL);
- (xxv) muscarinic receptor (particularly M1 subtype) agonists, such as cevimeline,
levetiracetam, bethanechol chloride (DUVOID, URECHOLINE), itameline, pilocarpine (SALAGEN),
NGX267, arecoline, L-687306 (Merck), L-689660 (Merck), furtrethonium iodide (FURAMON,
FURANOL), furtrethonium benzensulfonate, furtrethonium p-toluenesulfonate, McN-A-343, oxotremorine, sabcomeline, AC-90222 (Acadia Pharmaceuticals),
and carbachol (CARBASTAT, MIOSTAT, CARBOPTIC);
- (xxvi) neuroprotective drugs such as bosutinib, condoliase, airmoclomol, lamotrigine,
perampanel, aniracetam, minaprime, viluzole 2,3,4,9-tetrahydro-1H-carbazol-3-one oxime, desmoteplase, anatibant, astaxanthin, neuropeptide NAP (e.g.
AL-108 and AL-208; both Allon Therapeutics), neurostrol, perampenel, ispronicline,
bis(4-β-D-glucopyranosyloxybenzyl)-2-β-D-glucopyranosyl-2-isobutyltartrate (also known
as dactylorhin B or DHB), formobactin, xaliproden (XAPRILA), lactacystin, dimeboline
hydrochloride (DIMEBON), disufenton (CEROVIVE), arundic acid (ONO-2506, PROGLIA, CEREACT),
citicoline (also known as cytidine 5'-diphosphocholine), edaravone (RADICUT), AEOL-10113
and AEOL-10150 (both Aeolus Pharmaceuticals), AGY-94806 (also known as SA-450 and
Msc-1), granulocyte-colony stimulating factor (also known as AX-200), BAY-38-7271
(also known as KN-387271; Bayer AG), ancrod (VIPRINEX, ARWIN), DP-b99 (D-Pharm Ltd),
HF-0220 (17-β-hydroxyepiandrosterone; Newron Pharmaceuticals), HF-0420 (also known
as oligotropin), pyridoxal 5'-phosphate (also known as MC-1), microplasmin, S-18986,
piclozotan, NP031112, tacrolimus, L-seryl-L-methionyl-L-alanyl-L-lysyl-L-glutamyl-glycyl-L-valine,
AC-184897 (Acadia Pharmaceuticals), ADNF-14 (National Institutes of Health), stilbazulenyl
nitrone, SUN-N8075 (Daiichi Suntory Biomedical Research), and zonampanel;
- (xxvii) nicotinic receptor agonists, such as epibatidine, bupropion, CP-601927, varenicline,
ABT-089 (Abbott), ABT-594, AZD-0328 (AstraZeneca), EVP-6124, R3487 (also known as
MEM3454; Roche/Memory Pharmaceuticals), R4996 (also known as MEM63908; Roche/Memory
Pharmaceuticals), TC-4959 and TC-5619 (both Targacept), and RJR-2403;
- (xxviii) norepinephrine (noradrenaline) reuptake inhibitors, such as atomoxetine (STRATTERA),
doxepin (APONAL, ADAPIN, SINEQUAN), nortriptyline (AVENTYL, PAMELOR, NORTRILEN), amoxapine
(ASENDIN, DEMOLOX, MOXIDIL), reboxetine (EDRONAX, VESTRA), viloxazine (VIVALAN), maprotiline
(DEPRILEPT, LUDIOMIL, PSYMION), bupropion (WELLBUTRIN), and radaxafine;
- (xxix) phosphodiesterase (PDE) inhibitors, including (a) PDE1 inhibitors (e.g. vinpocetine
(CAVINTON, CERACTIN, INTELECTOL) and those disclosed in US Patent No 6,235,742, (b) PDE2 inhibitors (e.g. erythro-9-(2-hydroxy-3-nonyl)adenine (EHNA), BAY 60-7550,
and those described in US Patent No. 6,174,884), (c) PDE3 inhibitors (e.g. anagrelide, cilostazol, milrinone, olprinone, parogrelil,
and pimobendan), (d) PDE4 inhibitors (e.g. apremilast, ibudilastroflumilast, rolipram,
Ro 20-1724, ibudilast (KETAS), piclamilast (also known as RP73401), CDP840, cilomilast
(ARIFLO), roflumilast, tofimilast, oglemilast (also known as GRC 3886), tetomilast
(also known as OPC-6535), lirimifast, theophylline (UNIPHYL, THEOLAIR), arofylline
(also known as LAS-31025), doxofylline, RPR-122818, or mesembrine), and (e) PDE5 inhibitors
(e.g. sildenafil (VIAGRA, REVATIO), tadalafil (CIALIS), vardenafil (LEVITRA, VIVANZA),
udenafil, avanafil, dipyridamole (PERSANTINE), E-4010, E-4021, E-8010, zaprinast,
iodenafil, mirodenafil, DA-8159, and those disclosed in International Patent Applications
WO2002/020521, WO2005/049616, WO2006/120552, WO2006/126081, WO2006/126082, WO2006/126083, and WO2007/122466), (f) PDE9 inhibitors (e.g. BAY 73-6691 (Bayer AG) and those disclosed in US Patent
Publication Nos US2003/0195205, US2004/0220186, US2006/0111372, US2006/0106035, and USSN 12/118,062 (filed May 9, 2008)), and (g) PDE10 inhibitor such as 2-[4-(1-Methyl-4-pyridin-4-yl-1H-pyrazol-3-yl)phenoxymethyl]quinoline
(PF-2545920), and SCH-1518291;
- (xxx) quinolines, such as quinine (including its hydrochloride, dihydrochloride, sulfate,
bisulfate and gluconate salts), chloroquine, sontoquine, hydroxychloroquine (PLAQUENIL),
mefloquine (LARIAM), and amodiaquine (CAMOQUIN, FLAVOQUINE);
- (xxxi) β-secretase inhibitors, such as ASP-1702, SCH-745966, JNJ-715754, AMG-0683,
AZ-12304146, BMS-782450, GSK-188909, NB-533, LY-2886721, E-2609, HPP-854, (+)-phenserine
tartrate (POSIPHEN), LSN-2434074 (also known as LY-2434074), KMI-574, SCH-745966,
Ac-rER (N2-acetyl-D-arginyl-L-arginine), loxistatin (also known as E64d), and CA074Me;
- (xxxii) γ-secretase inhibitors and modulators, such as BMS-708163 (Avagacest), WO20060430064 (Merck), DSP8658 (Dainippon), ITI-009, L-685458 (Merck), ELAN-G, ELAN-Z, 4-chloro-N-[2-ethyl-1(S)-(hydroxymethyl)butyl]benzenesulfonamide;
- (xxxiii) serotonin (5-hydroxytryptamine) 1A (5-HT1A) receptor antagonists, such as spiperone, levo-pindolol, BMY 7378, NAD-299, S(-)-UH-301, NAN 190, lecozotan;
- (xxxiv) serotonin (5-hydroxytryptamine) 2C (5-HT2c) receptor agonists, such as vabicaserin,
and zicronapine;
- (xxxv) serotonin (5-hydroxytryptamine) 4 (5-HT4) receptor agonists, such as PRX-03140 (Epix);
- (xxxvi) serotonin (5-hydroxytryptamine) 6 (5-HT6) receptor antagonists, such as A-964324, AVI-101, AVN-211, mianserin (TORVOL, BOLVIDON,
NORVAL), methiothepin (also known as metitepine), ritanserin, ALX-1161, ALX-1175,
MS-245, LY-483518 (also known as SGS518; Lilly), MS-245, Ro 04-6790, Ro 43-68544,
Ro 63-0563, Ro 65-7199, Ro 65-7674, SB-399885, SB-214111, SB-258510, SB-271046, SB-357134,
SB-699929, SB-271046, SB-742457 (GlaxoSmithKline), Lu AE58054 (Lundbeck A/S), and
PRX-07034 (Epix);
- (xxxvii) serotonin (5-HT) reuptake inhibitors such as alaproclate, citalopram (CELEXA,
CIPRAMIL), escitalopram (LEXAPRO, CIPRALEX), clomipramine (ANAFRANIL), duloxetine
(CYMBALTA), femoxetine (MALEXIL), fenfluramine (PONDIMIN), norfenfluramine, fluoxetine
(PROZAC), fluvoxamine (LUVOX), indalpine, milnacipran (IXEL), paroxetine (PAXIL, SEROXAT),
sertraline (ZOLOFT, LUSTRAL), trazodone (DESYREL, MOLIPAXIN), venlafaxine (EFFEXOR),
zimelidine (NORMUD, ZELMID), bicifadine, desvenlafaxine (PRISTIQ), brasofensine, vilazodone,
cariprazine, neuralstem and tesofensine;
- (xxxviii) trophic factors, such as nerve growth factor (NGF), basic fibroblast growth
factor (bFGF; ERSOFERMIN), neurotrophin-3 (NT-3), cardiotrophin-1, brain-derived neurotrophic
factor (BDNF), neublastin, meteorin, and glial-derived neurotrophic factor (GDNF),
and agents that stimulate production of trophic factors, such as propentofylline,
idebenone, PYM50028 (COGANE; Phytopharm), and AIT-082 (NEOTROFIN);
- (xxxix) Glycine transporter-1 inhibitors such as paliflutine, ORG-25935, JNJ-17305600,
and ORG-26041;
- (xl) AMPA-type glutamate receptor modulators such as perampanel, mibampator, selurampanel,
GSK-729327, and N-((3S, 4S)-4-(4-(5-cyanothiophen-2-yl)phenoxy) tetrahydrofuran-3-yl)propane-2-sulfonamide;
and the like.
[0075] The present invention further comprises kits that are suitable for use in performing
the methods of treatment described above. In one embodiment, the kit contains a first
dosage form comprising one or more of the compounds of the present invention and a
container for the dosage, in quantities sufficient to carry out the methods of the
present invention.
[0076] In another embodiment, the kit of the present invention comprises one or more compounds
of the invention.
[0077] The compounds of Formula I, Formula la, Formula Ib and Formula Ic, or their pharmaceutically
acceptable salts, may be prepared by the methods described below, together with synthetic
methods known in the art of organic chemistry, or modifications and derivatizations
that are familiar to those of ordinary skill in the art. The starting materials used
herein are commercially available or may be prepared by routine methods known in the
art (such as those methods disclosed in standard reference books such as the
COMPENDIUM OF ORGANIC SYNTHETIC METHODS, Vol. I-XII (published by Wiley-Interscience)). Preferred methods include, but are not limited to, those described below.
[0078] During any of the following synthetic sequences, it may be necessary and/or desirable
to protect sensitive or reactive groups on any of the molecules concerned. This can
be achieved by means of conventional protecting groups, such as those described in
T. W. Greene, Protective Groups in Organic Chemistry, John Wiley & Sons, 1981;
T. W. Greene and P. G. M. Wuts, Protective Groups in Organic Chemistry, John Wiley
& Sons, 1991; and
T. W. Greene and P. G. M. Wuts, Protective Groups in Organic Chemistry, John Wiley
& Sons, 1999.
[0079] Compounds of Formula I, Formula Ia, Formula Ib, Formula Ic and Formula Id, or their
pharmaceutically acceptable salts, can be prepared according to the reaction Schemes
discussed herein below. Unless otherwise indicated, the substituents in the Schemes
are defined as above. Isolation and purification of the products is accomplished by
standard procedures, which are known to a chemist of ordinary skill.
[0080] It will be understood by one skilled in the art that the various symbols, superscripts
and subscripts used in the schemes, methods and examples are used for convenience
of representation and/or to reflect the order in which they are introduced in the
schemes, and are not intended to necessarily correspond to the symbols, superscripts
or subscripts in the appended claims. The schemes are representative of methods useful
in synthesizing the compounds of the present invention. They are not to constrain
the scope of the invention in any way.

[0081] Scheme 1 illustrates a method for preparing compounds depicted by Formula
I. A compound of Formula
1.1 is heated in the presence of an aqueous acid such as hydrochloric acid to furnish
the corresponding pyridinone acid of Formula
1.2. The intermediate of Formula
1.2 is subjected to an amide coupling and
in situ cyclization reaction with an amino alcohol of Formula
1.3 using a coupling reagent such as HATU [
O-(7-azabenzotriazol-1-yl)-
N,N,N',N'-tetramethyluronium hexafluorophosphate]. The reaction is carried out in the presence
of a suitable base such as diisopropylethylamine and in a solvent such as dichloromethane,
or
N,N'-dimethylformamide.

[0082] Scheme 2 illustrates a method for the preparation of compounds of Formula
I. This method commences with reaction of chloroaldehyde
2.1 and an amine of Formula
2.2 using one of many reductive amination protocols known to those skilled in the art.
For example, this reaction may be carried out by using a reducing agent such as sodium
triacetoxyborohydride in a suitable solvent such as methanol. Following purification,
the resultant chloroalkylamine
2.3 may be isolated and stored as its HCl salt. The final compound of Formula
I may then be prepared by treating a mixture of chloroalkylamine
2.3, acid
1.2, and a base such as diisopropylethylamine with a suitable amide coupling reagent such
as BOP-Cl [(bis(2-oxo-3-oxazolidinyl)phosphonic chloride], T3P [propylphosphonic anhydride]
or HATU (preferably HATU) in a solvent such as dichloromethane.

[0083] The aminoalcohol coupling partner of Formula
1.3 may be prepared via a wide variety of synthetic methods, which can readily be envisioned
and developed by one skilled in the art. These include, but are not limited to, those
methods illustrated in Scheme 3. For example, the aminoalcohol of Formula
1.3 may be prepared by carrying out a reductive amination of a ketone of Formula
3.1 with an amine of Formula
2.2 using one of many procedures well known to those skilled in the art. Another method
involves reductive amination of an aldehyde of Formula
3.2 with an amine of Formula
2.2 followed by removal of the TBS protecting group by using a suitable procedure including
treatment with methanolic HCl or tetrabutylammonium fluoride. Another method for the
synthesis of an aminoalcohol of Formula
1.3 involves alkylation of amine
3.3 with a halide or mesylate of Formula
3.4. Yet another method involves alkylation of an amine of Formula
2.2 with bromoalcohol
3.5. Methods of synthesis for various amines
2.2, as well as alternative methods of preparation of amino alcohols
1.3, are exemplified in the Experimental Section. A person skilled in the art, utilizing
these disclosures in combination with what is commonly known in the art, may further
generalize those syntheses to allow access to a wide variety of amines
2.2 and amino alcohols
1.3 including but not limited to variations in R
2a, R
2b, y, alternative cycloalkyls and heterocycloalkyls A, and variously substituted aryls
and heteroaryls R
3.

[0084] Scheme 4 illustrates a method for the preparation of compounds of Formula
1.1 where R
1-X = 4-methylimidazol-1-yl. A 3-aminopyridine compound of Formula
4.1 is brominated using
N-bromosuccinimide in a solvent such as a mixture of DMSO and water. The resulting
intermediate of Formula
4.2 is then heated with sodium methoxide in a suitable solvent such as 1,4-dioxane to
afford a compound of Formula
4.3. The intermediate of Formula
4.3 is then treated with a mixture of acetic anhydride and formic acid to afford a formamide
of Formula
4.4, which is alkylated with chloroacetone in the presence of potassium iodide and a base
such as Cs
2CO
3 in a suitable solvent such as DMF. The resulting intermediate of Formula
4.5 is then heated in the presence of NH
4OAc in acetic acid to furnish the imidazole derivative
4.6. Finally, the compound of Formula
1.1 can be prepared by subjecting the intermediate of Formula
4.6 to a carbonylation reaction. This transformation may be carried out by heating a
solution of
4.6 and a base such as triethylamine in an alcohol solvent such as MeOH under an atmosphere
of CO in the presence of a suitable palladium catalyst such as Pd(dppf)
2Cl
2·DCM [[1,1'-bis(diphenylphosphino)ferrocene]dichloropalladium(II), dichloromethane
complex].

[0085] Scheme 5 depicts a method for the preparation of compounds of Formula
1.1. A pyridyl derivative of Formula
5.1 is oxidized with an oxidizing agent such as mCPBA [3-chloroperoxybenzoic acid] in
a suitable solvent such as dichloroethane to afford the corresponding
N-oxide of Formula
5.2. The intermediate of Formula
5.2 is then heated in the presence of TMSCN [trimethylsilyl cyanide] and a base such
as triethylamine in a solvent such as acetonitrile to afford the intermediate of Formula
5.3. The corresponding ester may then be prepared from
5.3 in two steps by subjecting
5.3 to sodium methoxide in a solvent such as THF, followed by treatment with an alcohol
and an acid such as HCl. The ester of Formula
5.5 is a versatile intermediate that allows introduction of a variety of heterocycles
R
1X. For example,
5.5 may be subjected to a Suzuki coupling with a heteroarylboronic acid using methods
well known to those skilled in the art [see
Tetrahedron 2002, 58, 9633-9695]. Alternatively, the compound of Formula
5.5 may be coupled to a heterocycle X using a direct arylation approach [see
D. Lapointe et al., J. Org. Chem. 2011, 76, 749-759, and references therein]. For example,
5.5 may be coupled to 2-methyl-1,3-oxazole [Formula
5.7 where R
1 = Me] by heating in the presence of a suitable palladium catalyst such as allylpalladium
chloride dimer and a base such as K
2CO
3 in a solvent such as 1,4-dioxane to afford the intermediate of Formula
1.1 where R
1X = 2-methyl-1,3-oxazol-5-yl.
[0086] Alternatively, the compound of Formula
5.5 may be converted to the corresponding boronate
5.6, using a palladium-catalyzed cross coupling with a diboron reagent such as 5,5,5',5'-tetramethyl-2,2'-bi-1,3,2-dioxaborinane
in the presence of potassium acetate and a palladium catalyst such as Pd(dppf)
2Cl
2·DCM in a solvent such as 1,4-dioxane. The resulting boronate intermediate of Formula
5.6 can in turn be subjected to a Suzuki coupling with a heteroaryl halide to afford
the final compound of Formula
1.1. Another method for the introduction of a heterocycle X involves the use of a Chan-Lam
coupling [see
Tetrahedron Lett. 2003, 44, 3863-3865, and
Synthesis 2008, 5, 795-799]. For example,
5.6 may be coupled to substituted imidazole
5.8 by heating with a suitable copper source such as copper oxide or copper acetate in
a solvent such as methanol in the presence of air to afford the intermediate of Formula
1.1 where X = imidazol-1-yl.

[0087] Scheme 6 illustrates a method for the synthesis of compounds of Formula
I. The method commences by heating the compound of Formula
6.1 in an acid such as hydrochloric acid to afford pyridinone acid intermediate
6.2. The acid of Formula
6.2 may be subjected to a coupling / cyclization reaction with an aminoalcohol of Formula
1.3 to afford an intermediate of Formula
6.3 using chemistry described in Scheme 1. The final compound, Formula
I, may then be formed directly from
6.3 or via boronate
6.4 using the strategies discussed in Scheme 5. Alternatively, compounds of Formula I
where heterocycle X is linked to the pyridinone ring via a C-N bond may be formed
by nucleophilic aromatic substitution. For example, triazole
6.5 may be coupled to
6.3 by heating in the presence of a base such as K
2CO
3 and a solvent such as DMSO to afford the final compound of Formula I where X = triazol-1-yl.

[0088] Scheme 7 illustrates a method for the synthesis of compounds of Formula
I where z = 1 and R
4a = R
4b = R
5a = R
5b = H. The method involves heating a mixture of a compound of Formula
1.2, dibromoethane, and a base such as Cs
2CO
3 in a solvent such as DMF to afford lactone intermediate
7.1. The lactone of Formula
7.1 may then be reacted with an amine of Formula
2.2 in the presence of a reagent such as DIBAL (diisobutylaluminum hydride) or bis(trimethylaluminum)-1,4-diazabicyclo[2.2.2]octane
adduct in a solvent such as THF to afford the amide alcohol of Formula
7.2. This intermediate, in turn, may be reacted with methanesulfonyl chloride in the presence
of a base such as triethylamine in a solvent such as THF followed by treatment with
a base such as 1,3,4,6,7,8-hexahydro-2
H-pyrimido[1,2-
a]pyrimidine to afford the compound of Formula
I wherein z = 1 and R
4a = R
4b = R
5a = R
5b = H. Alternatively, the ring closure may be carried out in a stepwise fashion by
first converting alcohol
7.2 into the corresponding chloride by treatment with thionyl chloride, followed by deprotonation
of the amide NH with a suitable base such as lithium bis(trimethylsilyl)amide to afford
the final compound Formula
I.

[0089] Scheme 8 illustrates a method for the synthesis of amines of Formula
8.7, which represent a subset of the general structure of Formula
2.2. The synthesis commences with deprotonation of ethynyl(trimethyl)silane using a suitable
base such as
n-butyllithium in a solvent such as THF. This mixture is then added to a solution of
an epoxide of Formula
8.1 (see
J. Barluenga et al., J. Org. Chem. 1995, 60, 6696-6699) in a solvent such as THF. The resultant alkyne of Formula
8.3 may then be subjected to a Sonogashira coupling with an aryl or heteroaryl halide
of Formula
8.4 (where hal = bromine or iodine) using standard conditions known to those skilled
in the art (see
R. Chinchilla et al., Chem. Soc. Rev. 2011, 40, 5084-5121) to afford a compound of Formula
8.5. This intermediate is then subjected to a cyclization reaction mediated by a platinum
catalyst such as di-µ-chlorodichlorobis(ethylene)diplatinum(II) and an acid such as
trifluoroacetic acid in a solvent such as CH
2Cl
2 to afford a dihydrofuran intermediate of Formula
8.6. Finally, transfer hydrogenation using ammonium formate and a suitable catalyst such
as palladium hydroxide on carbon in a solvent such as methanol affords amine
8.7, which is subset of Formula
2.2, wherein y = 1, R
2a = CH
3, R
2b = H, A = tetrahydrofuranyl, and R
3 = aryl or heteroaryl.

[0090] Scheme 9 illustrates an alternative method for the synthesis of amines of Formula
8.7, a subset of the general structure of Formula
2.2. The methyl ester of Formula
9.1 is reacted with the dianion resulting from deprotonation of chloroacetic acid
(9.2) with a suitable base such as LDA in a solvent such as THF. The resulting α-chloroketone
of Formula
9.3 is then treated with a suitable reducing agent such as lithium tri-
tert-butoxyaluminum hydride in a solvent such as diethyl ether to afford chlorohydrin
9.4, which in turn may be converted to the p-nitrobenzoate
9.6 by acylation with p-nitrobenzoyl chloride
(9.5) in the presence of DMAP [4-(dimethylamino)pyridine] and a base such as triethylamine
in a solvent such as dichloromethane. The intermediate of Formula
9.6 is then treated with a base such as potassium hydroxide, resulting in the formation
of an epoxide of Formula
9.7. In analogy with Scheme 8, epoxide
9.7 may be subjected to ring opening with the acetylide resulting from deprotonation
of
8.2 with a base such as n-butyllithium in the presence of dimethylaluminum chloride in
a solvent such as toluene to afford the alkyne of Formula
9.8. This intermediate, in turn, is then subjected to removal of the trimethylsilyl group
by exposure to a protic solvent such as methanol and a base such as potassium carbonate
to deliver the deprotected alkyne
9.9. This intermediate is then subjected to a Sonogashira coupling with aryl halide
8.4, as described in Scheme 8, to afford the intermediate of Formula
9.10. This intermediate is then subjected to a cyclization reaction mediated by a platinum
catalyst such as di-µ-chlorodichlorobis(ethylene)diplatinum(II), an acid such as p-toluenesulfonic
acid, and trimethyl orthoformate in a solvent such as MeOH to afford the compound
of Formula
9.11. Treatment of
9.11 with boron trifluoride diethyl etherate and a reducing agent such as triethylsilane
in a suitable solvent such as dichloromethane delivers the tetrahydrofuran of Formula
9.12. Finally, removal of the Boc protecting group by exposure to an acid such as trifluoroacetic
acid or hydrochloric acid in a solvent such as dichloromethane or 1,4-dioxane provides
amine
8.7, which is a subset of Formula
2.2 wherein y = 1, R
2a = CH
3, R
2b = H, A = tetrahydrofuranyl, and R
3 = aryl or heteroaryl.
[0091] When intermediates used to synthesize compounds of the present invention incorporate
a basic center their suitable acid addition salts may be employed in synthetic pathways.
Such suitable addition salts include but are not limited to those derived from inorganic
acids, such as hydrochloric, hydrobromic, hydrofluoric, hydroiodic, boric, fluoroboric,
phosphoric, nitric, carbonic, and sulfuric acids, and organic acids such as acetic,
benzenesulfonic, benzoic, ethanesulfonic, fumaric, lactic, maleic, methanesulfonic,
trifluoromethanesulfonic, succinic, toluenesulfonic, and trifluoroacetic acids. Suitable
organic acids generally include but are not limited to aliphatic, cycloaliphatic,
aromatic, araliphatic, heterocyclic, carboxylic, and sulfonic classes of organic acids.
[0092] Specific examples of suitable organic acids include but are not limited to acetate,
trifluoroacetate, formate, propionate, succinate, lactate, maleate, fumarate, benzoate,
p-hydroxybenzoate, phenylacetate, mandelate, methanesulfonate, ethanesulfonate, benzenesulfonate,
toluenesulfonate, adipate, butyrate, camphorate, cyclopentanepropionate, dodecylsulfate,
heptanoate, hexanoate, nicotinate, 2-naphthalenesulfonate, oxalate, 3-phenylpropionate,
pivalate, and undecanoate.
[0093] Furthermore, where intermediates used to prepare compounds of the invention carry
an acidic moiety, suitable salts thereof may be employed for synthesis. Such salts
include alkali metal salts, i.e., lithium, sodium or potassium salts; alkaline earth
metal salts, e.g., calcium or magnesium salts; and salts formed with suitable organic
ligands such as amines or quaternary ammonium cations. Organic salts of such acidic
intermediates may be made from primary, secondary or tertiary amines such as methylamine,
diethylamine, ethylenediamine or trimethylamine. Quaternary amines may be prepared
by reaction of tertiary amines with agents such as lower alkyl (C
1-C
6) halides (e.g., methyl, ethyl, propyl, and butyl chlorides, bromides, and iodides),
dialkyl sulfates (i.e., dimethyl, diethyl, dibutyl, and diamyl sulfates), arylalkyl
halides (i.e., benzyl and phenethyl bromides), and others.
Experimental Procedures and Working Examples
[0094] The following illustrate the synthesis of various compounds of the present invention.
Additional compounds within the scope of this invention may be prepared using the
methods illustrated in these Examples, either alone or in combination with techniques
generally known in the art.
[0095] It will be understood that the intermediate compounds of the invention depicted above
are not limited to the particular enantiomer shown, but also include all stereoisomers
and mixtures thereof.
Experimental Procedures
[0096] Experiments were generally carried out under inert atmosphere (nitrogen or argon),
particularly in cases where oxygen- or moisture-sensitive reagents or intermediates
were employed. Commercial solvents and reagents were generally used without further
purification, including anhydrous solvents where appropriate (generally Sure-Seal™
products from the Aldrich Chemical Company, Milwaukee, Wisconsin). Products were generally
dried under vacuum before being carried on to further reactions or submitted for biological
testing. Mass spectrometry data is reported from either liquid chromatography-mass
spectrometry (LCMS), atmospheric pressure chemical ionization (APCI) or gas chromatography-mass
spectrometry (GCMS) instrumentation. Chemical shifts for nuclear magnetic resonance
(NMR) data are expressed in parts per million (ppm, δ) referenced to residual peaks
from the deuterated solvents employed.
[0097] For syntheses referencing procedures in other Examples or Methods, reaction conditions
(length of reaction and temperature) may vary. In general, reactions were followed
by thin layer chromatography or mass spectrometry, and subjected to work-up when appropriate.
Purifications may vary between experiments: in general, solvents and the solvent ratios
used for eluents/gradients were chosen to provide appropriate R
fs or retention times.
Preparations
Preparation P1: 5-(4-Methyl-1H-imidazol-1-yl)-6-oxo-1,6-dihydropyridine-2-carboxylic acid, hydrobromide salt (P1)
[0098]

Step 1. Synthesis of methyl 6-methoxy-5-(4-methyl-1H-imidazol-1-yl)pyridine-2-carboxylate (C2).
[0099] To a solution of the known 6-bromo-2-methoxy-3-(4-methyl-1
H-imidazol-1-yl)pyridine
(C1, T. Kimura et al., U.S. Pat. Appl. Publ. 2009, US 20090062529 A1) (44.2 g, 165 mmol) in methanol (165 mL) was added triethylamine (46 mL, 330 mmol)
and [1,1'-bis(diphenylphosphino)ferrocene]dichloropalladium(II), dichloromethane complex
(6.7 g, 8.2 mmol). The mixture was degassed several times with nitrogen. The reaction
was heated to 70°C under CO atmosphere (3 bar) in a Parr apparatus. After 30 minutes,
the pressure dropped to 0.5 bar; additional CO was added until the pressure stayed
constant for a period of 30 minutes. The mixture was allowed to cool to room temperature
and filtered through a pad of Celite. The Celite pad was washed twice with methanol
and the combined filtrates were concentrated under reduced pressure. The residue (88
g) was dissolved in ethyl acetate (1 L) and water (700 mL); the organic layer was
washed with water (200 mL), and the aqueous layer was extracted with ethyl acetate
(500 mL). The combined organic layers were dried over magnesium sulfate, filtered
and concentrated to provide the title compound. Yield: 42.6 g, quantitative. Step
2. Synthesis of 5-(4-methyl-1
H-imidazol-1-yl)-6-oxo-1,6-dihydropyridine-2-carboxylic acid, hydrobromide salt
(P1).
[0100] A solution of
C2 (3.82 g, 15.9 mmol) in acetic acid (30 mL) and aqueous hydrobromic acid (48%, 30
mL) was heated at reflux for 4 hours. The reaction was allowed to cool to room temperature,
and then chilled in an ice bath; the resulting precipitate was collected via filtration
and washed with ice water (30 mL). Recrystallization from ethanol (20 mL) provided
the title compound as a light yellow solid. Yield: 3.79 g, 12.6 mmol, 79%. LCMS m/z
220.1 (M+1).
1H NMR (400 MHz, DMSO-
d6) δ 12.6 (v br s, 1 H), 9.58-9.60 (m, 1 H), 8.07 (d, J=7.6 Hz, 1 H), 7.88-7.91 (m,
1 H), 7.09 (d, J=7.4 Hz, 1 H), 2.34 (br s, 3H).
Preparation P2: 5-(4-Methyl-1H-imidazol-1-yl)-6-oxo-1,6-dihydropyridine-2-carboxylic acid, hydrochloride salt (P2)
[0101]

[0102] A mixture of
C2 (12.8 g, 51.8 mmol) and 37% hydrochloric acid (25 mL) was heated at reflux for 18
hours. After the reaction mixture had cooled to room temperature, the solid was collected
via filtration; it was stirred with 1,4-dioxane (2 x 20 mL) and filtered again, to
afford the product as a yellow solid. Yield: 13 g, 51 mmol, 98%.
1H NMR (400 MHz, CD
3OD) δ 9.52 (br s, 1 H), 8.07 (d, J=7.5 Hz, 1 H), 7.78 (br s, 1 H), 7.21 (d, J=7.5
Hz, 1 H), 2.44 (s, 3H).
Preparation P3: 7-(4-Methyl-1H-imidazol-1-yl)-3,4-dihydropyrido[2,1-c][1,4]oxazine-1,6-dione (P3)
[0103]

[0104] Compound
P2 (65 g, 250 mmol), 1,2-dibromoethane (52.5 g, 280 mmol) and cesium carbonate (124
g, 381 mmol) were combined in
N,N-dimethylformamide (850 mL) and heated at 90 °C for 6 hours. The reaction mixture
was then cooled and filtered through Celite. After concentration of the filtrate
in vacuo, the residue was dissolved in dichloromethane (500 mL), washed with saturated aqueous
sodium chloride solution (100 mL), washed with water (50 mL), dried over magnesium
sulfate, filtered, and concentrated under reduced pressure. The resulting solid was
washed with acetonitrile to provide the product. Yield: 46.5 g, 190 mmol, 76%.
1H NMR (400 MHz, CDCl
3) δ 8.33 (d, J=1.4 Hz, 1 H), 7.43 (AB quartet,
JAB=7.7 Hz, Δν
AB=33.4 Hz, 2H), 7.15-7.17 (m, 1 H), 4.66-4.70 (m, 2H), 4.38-4.42 (m, 2H), 2.30 (d,
J=0.8 Hz, 3H).
Preparation P4: 2-({cis-2-[2-(Trifluoromethyl)phenoxy]cyclobutyl}amino)ethanol (P4)
[0105]

Step 1. Synthesis of 2-bromocyclobutanone (C3).
[0106] A solution of cyclobutanone (1.28 mL, 17.1 mmol) in chloroform (20 mL) at 0 °C was
treated drop-wise with bromine (0.88 mL, 17 mmol) over 25 minutes, warmed to room
temperature and stirred for 16 hours. Dichloromethane (100 mL) was added and the solution
was washed with aqueous sodium thiosulfate solution (50 mL) and saturated aqueous
sodium chloride solution (50 mL). The organic layer was dried over magnesium sulfate
and concentrated
in vacuo to afford the title compound as a colorless oil. Yield: 2.45 g, 16.4 mmol, 96%.
1H NMR (400 MHz, CDCl
3) δ 4.97-5.04 (m, 1 H), 3.16-3.24 (m, 2H), 2.69-2.80 (m, 1 H), 2.18-2.30 (m, 1 H).
Step 2. Synthesis of 2-[2-(trifluoromethyl)phenoxy]cyclobutanone (C4).
[0107] A solution of 2-(trifluoromethyl)phenol (2.72 g, 16.8 mmol) in acetone (147 mL) at
0 °C was treated with cesium carbonate (5.47 g, 16.8 mmol), followed by drop-wise
addition of
C3 (2.5 g, 16.8 mmol). The mixture was stirred at 0 °C for 1.5 hours, filtered through
Celite, and concentrated
in vacuo to afford the title compound as a colorless oil. Yield: 3.5 g, 15 mmol, 89%.
1H NMR (400 MHz, CDCl
3) δ 7.56 (br d,
J=7.7 Hz, 1 H), 7.45-7.50 (m, 1 H), 7.14 (d,
J=8.3 Hz, 1 H), 7.07 (br dd,
J=7.6, 7.6 Hz, 1 H), 5.31-5.37 (m, 1 H), 2.92-3.00 (m, 2H), 2.55-2.66 (m, 1 H), 2.19-2.30
(m, 1 H).
Step 3. Synthesis of 2-({cis-2-[2-(trifluoromethyl)phenoxy]cyclobutyl}amino)ethanol (P4).
[0108] A solution of
C4 (3.5 g, 15 mmol) and 2-aminoethanol (1.03 g, 16.8 mmol) in 1,2-dichloroethane (100
mL) was treated with sodium triacetoxyborohydride (5.62 g, 25.2 mmol) and stirred
at room temperature for 2 hours. The reaction was treated with acetic acid (4 mL)
and stirred at room temperature for 16 hours. Aqueous sodium hydroxide solution (1
N, 100 mL) was added and the mixture was extracted with dichloromethane (2 x 100 mL).
The combined organic layers were dried over magnesium sulfate and concentrated
in vacuo. Purification via silica gel chromatography (Gradient: 0% to 70% [10% 2 N ammonia
in methanol /90% ethyl acetate] in ethyl acetate) afforded the title compound as a
light amber oil. Yield: 2.1 g, 7.6 mmol, 51%. The indicated
cis stereochemistry was tentatively assigned, based on NOE (nuclear Overhauser enhancement)
experiments.
1H NMR (400 MHz, CDCl
3) δ 7.57 (br dd,
J=7.7, 1.3 Hz, 1 H), 7.41-7.47 (m, 1 H), 6.99 (br dd,
J=7.6, 7.6 Hz, 1 H), 6.80 (d,
J=8.2 Hz, 1 H), 4.88-4.93 (m, 1 H), 3.54-3.66 (m, 3H), 2.81-2.88 (m, 1 H), 2.63-2.70
(m, 1 H), 2.22-2.31 (m, 1H), 1.97-2.16 (m, 2H), 1.86-1.94 (m, 1H).
Preparation P5: 2-({[3-(4-Chlorophenyl)cyclohexyl]methyl}amino)ethanol (P5)
[0109]

Step 1. Synthesis of 1-chloro-4-[3-(methoxymethylidene)cyclohexyl]benzene (C5).
[0110] To a solution of (methoxymethyl)trimethylsilane (694 mg, 5.75 mmol) in tetrahydrofuran
(6.8 mL) at -78 °C was added drop-wise sec-butyllithium (1.4 M, 4.45 mL, 6.23 mmol).
The solution was warmed to -25 °C, held at that temperature for 30 minutes, then cooled
to -78 °C. To the reaction was added drop-wise 3-(4-chlorophenyl)cyclohexanone (prepared
according to the method of
G. A. Whitlock et al., Bioorg. Med. Chem. Lett. 2009, 19, 3118-3121) (1.0 g, 4.8 mmol). The reaction was warmed to -25 °C and stirred for 30 minutes,
then allowed to slowly warm to room temperature and stir for 48 hours. The reaction
was diluted with tetrahydrofuran (10 mL), quenched with saturated aqueous ammonium
chloride solution, and extracted three times with ethyl acetate. The combined organic
layers were dried over magnesium sulfate and concentrated
in vacuo to provide the crude title compound as a pale yellow oil. Yield: 1.25 g. This material
was used directly in the following step. GCMS
m/
z 236 (M
+).
Step 2. Synthesis of 3-(4-chlorophenyl)cyclohexanecarbaldehyde (C6).
[0111] Crude
C5 (1.25 g from the preceding step, ≤4.8 mmol) was dissolved in aqueous formic acid
(3 M, 2.0 mL) and the mixture was refluxed for 2 hours. The solution was cooled to
room temperature, diluted with water and extracted twice with ethyl acetate; the combined
organic layers were dried over sodium sulfate and concentrated
in vacuo. Silica gel chromatography (Gradient: 0% to 100% ethyl acetate in heptanes) afforded
the title compound as an oil, presumed by
1H NMR to be a roughly 4:1 mixture of the two stereoisomers. Yield: 338 mg, 1.52 mmol,
32% over two steps. GCMS
m/
z 222 (M
+).
1H NMR (400 MHz, CDCl
3) δ [9.65 (d,
J=1.4 Hz) and 9.79 (br s), total 1 H], 7.25-7.30 (m, 2H), 7.12-7.18 (m, 2H), 1.21-2.66
(m, 10H).
Step 3. Synthesis of 2-({[3-(4-chlorophenyl)cyclohexyl]methyl}amino)ethanol (P5).
[0112] To a solution of
C6 (338 mg, 1.52 mmol) in methanol (5 mL) was added 2-aminoethanol (139 mg, 2.28 mmol)
followed by acetic acid (89 µL, 1.55 mmol). The reaction was stirred at reflux for
2 hours, then cooled to 0 °C. Sodium borohydride (115 mg, 3.04 mmol) was added and
the mixture was allowed to warm to room temperature. The reaction was diluted with
ethyl acetate, quenched with water, and then extracted three times with ethyl acetate.
The combined organic layers were dried over sodium sulfate and concentrated
in vacuo to provide the crude title compound as a liquid. Yield: 362 mg, 1.35 mmol, 89%. This
was presumed to be a mixture of stereoisomers. LCMS
m/
z 268.3 (M+1).
1H NMR (400 MHz, CDCl
3), characteristic peaks: δ 7.22-7.28 (m, 2H), 7.10-7.16 (m, 2H), 3.63 (dd,
J=5.3, 5.1 Hz, 2H), 2.75 (dd,
J=5.3, 5.1 Hz, 2H).
Examples
Example 1
7-(4-Methyl-1H-imidazol-1-yl)-2-{trans-2-[2-(trifluoromethyl)phenoxy]cyclobutyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt (1)
[0113]

Step 1. Synthesis of cis-2-[2-(trifluoromethyl)phenoxy]cyclobutanol (C7).
[0114] Compound
C4 (3.00 g, 13.0 mmol) was dissolved in methanol (100 mL) and cooled to -78 °C. Sodium
borohydride (1.48 g, 39.1 mmol) was added portion-wise over 10 minutes, and the mixture
was stirred at -78 °C for an additional 30 minutes before being allowed to warm to
room temperature and stir for 1 hour. The reaction was quenched with saturated aqueous
sodium bicarbonate solution (100 mL) and extracted with dichloromethane (2 x 150 mL).
The organic layers were combined, washed with saturated aqueous sodium chloride solution
(100 mL), dried over magnesium sulfate, filtered and concentrated under reduced pressure.
Two purifications via silica gel chromatography [Gradients: 1) 0% to 50% ethyl acetate
in heptane; 2) 0% to 50% dichloromethane in heptane] provided the title compound as
a colorless oil. The product was tentatively assigned
cis stereochemistry on the basis of NOE studies. Yield: 650 mg, 2.80 mmol, 22%.
1H NMR (400 MHz, CDCl
3) δ 7.60 (br dd,
J=7.8, 1.2 Hz, 1 H), 7.47 (br ddd,
J=8.2, 7.8, 1.2 Hz, 1 H), 7.04 (br dd,
J=7.6, 7.6 Hz, 1 H), 6.87 (br d,
J=8.4 Hz, 1 H), 4.86-4.91 (m, 1 H), 4.45-4.53 (m, 1 H), 2.75 (d,
J=9.2 Hz, 1 H), 2.27-2.36 (m, 1 H), 2.02-2.22 (m, 3H).
Step 2. Synthesis of cis-2-[2-(trifluoromethyl)phenoxy]cyclobutyl methanesulfonate (C8).
[0115] A mixture of
C7 (484 mg, 2.08 mmol), triethylamine (0.87 mL, 6.3 mmol) and dichloromethane (30 mL)
was cooled to 0 °C and methanesulfonyl chloride (0.32 mL, 4.2 mmol) was added drop-wise
over 15 minutes. After an additional 30 minutes at 0 °C, the reaction was quenched
with saturated aqueous sodium bicarbonate solution (50 mL), and the mixture was extracted
with dichloromethane (2 x 50 mL). The combined organic layers were washed with saturated
aqueous sodium chloride solution (50 mL), dried over magnesium sulfate, filtered and
concentrated
in vacuo to provide the title compound as a colorless oil. Yield: 640 mg, 2.06 mmol, 99%.
1H NMR (400 MHz, CDCl
3) δ 7.60 (br dd,
J=7.8, 1.2 Hz, 1 H), 7.45-7.51 (m, 1 H), 7.06 (br dd,
J=7.7, 7.6 Hz, 1 H), 6.88 (br d,
J=8.4 Hz, 1 H), 5.26-5.32 (m, 1 H), 5.01-5.06 (m, 1 H), 2.95 (s, 3H), 2.53-2.63 (m,
1 H), 2.37-2.46 (m, 1 H), 2.18-2.30 (m, 2H).
Step 3. Synthesis of 2-({trans-2-[2-(trifluoromethyl)phenoxy]cyclobutyl}amino)ethanol (C9).
[0116] A mixture of
C8 (500 mg, 1.61 mmol) and 2-aminoethanol (5 mL) was heated at 90 °C for 18 hours, then
at 100 °C for an additional 24 hours. The reaction was cooled, diluted with ethyl
acetate (100 mL) and washed with aqueous sodium hydroxide solution (1 M, 5 x 50 mL).
The organic layer was dried over magnesium sulfate, filtered and concentrated
in vacuo. Purification via HPLC (Column: Phenomenex Luna C18(2), 5 µm; Mobile phase A: 0.1
% formic acid in water; Mobile phase B: 0.1 % formic acid in methanol; Gradient: 5%
to 100% B) afforded the title compound as a solid. Yield; 191 mg, 0.694 mmol, 43%.
LCMS
m/
z 276.3 (M+1).
1H NMR (400 MHz, CDCl
3) δ 8.49 (br s, 1 H), 7.56 (br d,
J=7.6 Hz, 1 H), 7.44-7.50 (m, 1 H), 7.04 (br dd,
J=7.6, 7.6 Hz, 1 H), 6.92 (br d,
J=8.4 Hz, 1 H), 4.90-4.97 (m, 1 H), 3.75-3.90 (m, 3H), 2.99-3.15 (m, 2H), 2.46-2.56
(m, 1 H), 2.21-2.31 (m, 1 H), 1.90-2.02 (m, 1 H), 1.77-1.89 (m, 1 H).
Step 4. Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-{trans-2-[2-(trifluoromethyl)phenoxy]cyclobutyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt (1).
[0117] A mixture of
P1 (35 mg, 0.13 mmol),
C9 (39 mg, 0.14 mmol),
O-(7-azabenzotriazol-1-yl)-
N,N,N,N'-tetramethyluronium hexafluorophosphate (HATU, 149 mg, 0.392 mmol) and
N,
N-diisopropylethylamine (0.89 mL, 0.51 mmol) in dichloromethane (2.3 mL) was stirred
for 20 hours. Water (5 mL) was added, and the mixture was extracted with dichloromethane
(3 x 5 mL). The combined organic layers were dried over magnesium sulfate, filtered,
and concentrated
in vacuo. Purification was carried out using reversed phase HPLC (Column: Waters Sunfire C18,
5 µm; Mobile phase A: 0.05% trifluoroacetic acid in water (v/v); Mobile phase B: 0.05%
trifluoroacetic acid in acetonitrile (v/v); Gradient: 10% to 100% B). Yield: 50 mg,
0.11 mmol, 85%. LCMS
m/
z 459.1 (M+1). Retention time: 2.53 minutes (Column: Waters Atlantis dC18, 4.6 x 50
mm, 5 µm; Mobile phase A: 0.05% trifluoroacetic acid in water (v/v); Mobile phase
B: 0.05% trifluoroacetic acid in acetonitrile (v/v); Gradient: 5% to 95% B over 4.0
minutes, linear; Flow rate: 2 mL/minute).
Example 2
7-(4-Methyl-1H-imidazol-1-yl)-2-{trans-2-[2-(trifluoromethyl)phenoxy]cyclopentyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (2)
[0118]

Step 1. Synthesis of trans-2-(dibenzylamino)cyclopentanol (C10).
[0119] To a solution of
trans-2-aminocyclopentanol hydrochloride (385 mg, 2.82 mmol) in 1,2-dichloroethane was
added benzaldehyde (748 mg, 7.04 mmol) and triethylamine (0.51 mL, 3.7 mmol). The
mixture was heated to reflux for 2 hours, cooled to room temperature, and sodium triacetoxyborohydride
was added. The reaction mixture was heated at reflux for an additional 18 hours, cooled
to room temperature, then taken up in dichloromethane. The organic layer was washed
with saturated aqueous sodium bicarbonate solution and with water, then dried over
magnesium sulfate, filtered, and concentrated
in vacuo. Purification via silica gel chromatography (Gradient: 25% to 50% ethyl acetate in
heptane) afforded the title compound as a golden oil. Yield: 734 mg, 2.61 mmol, 93%.
LCMS
m/
z 282.2 (M+1).
1H NMR (400 MHz, CDCl
3) δ 7.35-7.39 (m, 4H), 7.32 (br dd,
J=7.8, 7.2 Hz, 4H), 7.21-7.26 (m, 2H), 4.05-4.12 (m, 1 H), 3.79 (d,
J=13.9 Hz, 2H), 3.52 (d,
J=13.9 Hz, 2H), 2.90-2.99 (m, 1 H), 1.74-1.95 (m, 2H), 1.52-1.71 (m, 3H), 1.39-1.49
(m, 1 H).
Step 2. Synthesis of trans-N,N-dibenzyl-2-[2-(trifluoromethyl)phenoxy]cyclopentanamine (C11).
[0120] To a solution of
C10 (820 mg, 2.91 mmol) in tetrahydrofuran (20 mL) in a high pressure tube was added
sodium hydride (60% in oil, 175 mg, 4.37 mmol). After 15 minutes, 1-fluoro-2-(trifluoromethyl)benzene
(1.43 g, 8.74 mmol) was introduced, the tube was sealed, and the mixture was heated
to 70 °C for 18 hours, whereupon it was cooled to room temperature. The mixture was
taken up in ethyl acetate, then washed with water and with saturated aqueous sodium
chloride solution; the organic layer was dried over magnesium sulfate, filtered and
concentrated
in vacuo. Purification via silica gel chromatography (Gradient: 20% to 40% ethyl acetate in
heptane) afforded the title compound as a golden oil. Yield: 212 mg, 0.498 mmol, 17%.
LCMS
m/
z 426.2 (M+1).
1H NMR (400 MHz, CDCl
3) δ 7.55 (d,
J=7.8 Hz, 1 H), 7.41 (dd,
J=8.0, 7.8 Hz, 1 H), 7.34-7.39 (m, 4H), 7.24-7.30 (m, 4H), 7.17-7.23 (m, 2H), 7.03
(d,
J=8.4 Hz, 1 H), 6.95 (dd,
J=7.6, 7.6 Hz, 1 H), 4.76-4.82 (m, 1 H), 3.68 (AB quartet,
JAB=14.0 Hz, Aν
AB=41.1 Hz, 4H), 3.50-3.57 (m, 1 H), 1.85-2.00 (m, 2H), 1.62-1.84 (m, 4H).
Step 3. Synthesis of trans-2-[2-(trifluoromethyl)phenoxy]cyclopentanamine, hydrochloride salt (C12).
[0121] A solution of
C11 (212 mg, 0.498 mmol), hydrogen chloride (4 N in 1,4-dioxane, 2 mL) and 10% Pd/C (100
mg) in methanol (5 mL) was hydrogenated at 50 psi in a Parr shaker at 50 °C. After
3 hours, the reaction was filtered through Celite and concentrated
in vacuo to afford the title compound as a dark residue. Yield: 156 mg, quantitative. LCMS
m/
z 246.2 (M+1).
Step 4. Synthesis of trans-N-(2-chloroethyl)-2-[2-(trifluoromethyl)phenoxy]cyclopentanamine, hydrochloride salt
(C13).
[0122] To a solution of
C12 (130 mg, 0.463 mmol), triethylamine (0.097 mL, 0.695 mmol), and sodium triacetoxyborohydride
(238 mg, 1.06 mmol) in methanol (5 mL) was added chloroacetaldehyde (55% solution
in water, 0.071 mL, 0.60 mmol). After 3 hours, the reaction mixture was concentrated
in vacuo. The residue was taken up in dichloromethane and washed with saturated aqueous sodium
bicarbonate solution and with water. The organic layer was dried over magnesium sulfate
and filtered. To the filtrate was added hydrogen chloride (2 N in diethyl ether, 2
mL) and the mixture was concentrated
in vacuo to afford the title compound as a light brown solid. This material was taken on to
the next step without further purification. Yield: 111 mg, 0.323 mmol, 70%. LCMS
m/
z 308.1 (M+1).
Step 5. Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-{trans-2-[2-(trifluoromethyl)phenoxy]cyclopentyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (2).
[0123] To a solution of
P1 (80 mg, 0.27 mmol) and
C13 (110 mg, 0.32 mmol) in dichloromethane (5 mL) was added
N,
N-diisopropylethylamine (0.19 mL, 1.07 mmol) and
O-(7-azabenzotriazol-1-yl)-
N,
N,
N',
N'-tetramethyluronium hexafluorophosphate (HATU, 97%, 124 mg, 0.32 mmol). The reaction
was stirred for 5 days, then taken up in additional dichloromethane and washed with
saturated aqueous sodium bicarbonate solution and with water. The organic layer was
dried over magnesium sulfate, filtered and concentrated
in vacuo. Purification by reversed phase HPLC (Column: Waters XBridge C18, 5 µm; Mobile phase
A: 0.03% ammonium hydroxide in water (v/v); Mobile phase B: 0.03% ammonium hydroxide
in acetonitrile (v/v); Gradient: 30% to 70% B) afforded the title compound as an oil.
Yield: 3.6 mg, 7.6 µmol, 3%. LCMS
m/
z 473.3 (M+1). Retention time: 2.62 minutes (Column: Waters Atlantis dC18, 4.6 x 50
mm, 5 µm; Mobile phase A: 0.05% trifluoroacetic acid in water (v/v); Mobile phase
B: 0.05% trifluoroacetic acid in acetonitrile (v/v); Gradient: 5% to 95% B over 4.0
minutes, linear; Flow rate: 2 mL/minute).
Example 3
2-{trans-2-[(6,7-Difluoronalphthalen-1-yl)oxy]cyclobutyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (3)
[0124]

Step 1. Synthesis of 2-{[cis-2-(benzyloxy)cyclobutyl]amino}ethanol (C14).
[0125] A solution of 2-(benzyloxy)cyclobutanone (prepared according to the method of P.
Bisel et al.,
Eur. J. Org. Chem. 1998, 4, 729-733; 2.35 g, 13.3 mmol) and 2-aminoethanol (1.63 g, 26.7 mmol) in dichloromethane
(47 mL) was treated with acetic acid (0.76 mL, 13.3 mmol) and sodium triacetoxyborohydride
(5.95 g, 26.7 mmol) and stirred at room temperature for 16 hours. Aqueous sodium hydroxide
solution (1 N, 100 mL) was added and the mixture was extracted with dichloromethane
(2 x 100 mL). The combined organic layers were washed with aqueous sodium hydroxide
solution (1 N, 100 mL), dried over magnesium sulfate and concentrated
in vacuo to afford the product as a colorless oil. Yield: 2.9 g, 13 mmol, 98%.
1H NMR (400 MHz, CDCl
3) δ 7.28-7.39 (m, 5H), 4.51 (AB quartet,
JAB=11.7 Hz, Δν
AB=61.1 Hz, 2H), 4.13-4.18 (m, 1 H), 3.54-3.58 (m, 2H), 3.32-3.39 (m, 1 H), 2.72-2.78
(m, 2H), 2.5 (v br s, 2H), 2.05-2.14 (m, 1 H), 1.83-1.98 (m, 3H).
Step 2: Synthesis of 2-[cis-2-(benzyloxy)cyclobutyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (C15).
[0126] Compound
P1 (2.40 g, 8.00 mmol) and
C14 (2.00 g, 9.04 mmol) were combined in dichloromethane (160 mL) and treated with
N,
N-diisopropylethylamine (6.06 mL, 34.8 mmol) and
O-(7-azabenzotriazol-1-yl)-
N,N,N',N'-tetramethyluronium hexafluorophosphate (HATU, 97%, 7.84 g, 20.0 mmol). The reaction
was stirred at room temperature for 55 hours. Water (200 mL) was added, and the mixture
was extracted with dichloromethane (3 x 150 mL). The combined organic layers were
dried over magnesium sulfate and concentrated
in vacuo. Purification via silica gel chromatography (Gradient: 50% to 100% [10% 2 N ammonia
in methanol / 90% ethyl acetate] in ethyl acetate) afforded the title compound as
a light yellow solid. Yield: 2.95 g, 7.29 mmol, 91%.
1H NMR (400 MHz, CDCl
3), characteristic peaks: δ 8.35 (d,
J=1.4 Hz, 1 H), 7.52 (d,
J=7.8 Hz, 1 H), 7.23-7.35 (m, 6H), 7.18-7.20 (m, 1 H), 5.22-5.29 (m, 1H), 4.45 (AB
quartet,
JAB=11.7 Hz, Δν
AB=52.2 Hz, 2H), 4.06-4.18 (m, 2H), 3.68-3.79 (m, 2H), 2.46-2.58 (m, 1H), 2.31 (d,
J=0.8 Hz, 3H).
Step 3: Synthesis of 2-[cis-2-hydroxycyclobutyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (C16).
[0127] Compound
C15 (2.50 g, 6.18 mmol) was mixed with dichloromethane (110 mL), treated with methanesulfonic
acid (27 mL) and stirred at room temperature for 1.5 hours. Aqueous sodium hydroxide
(6 N) was added until the pH reached 12 and then the mixture was extracted with dichloromethane
(3 x 150 mL, then 5 x 50 mL). The combined organic layers were dried over magnesium
sulfate and concentrated
in vacuo. Silica gel chromatography (Gradient: 50% to 100% [20% 2 N ammonia in methanol / 80%
ethyl acetate] in ethyl acetate) provided the title compound as a white solid. Yield:
1.40 g, 4.45 mmol, 72%.
1H NMR (400 MHz, CDCl
3) δ 8.24 (d,
J=1.2 Hz, 1 H), 7.36 (d,
J=7.6 Hz, 1 H), 7.15 (d,
J=7.8 Hz, 1 H), 7.03-7.05 (m, 1 H), 4.70-4.78 (m, 2H), 4.26-4.40 (m, 2H), 3.99 (ddd,
J=13.4, 6.9, 4.3 Hz, 1H), 3.68 (ddd,
J=13.3, 7.8, 4.3 Hz, 1H), 2.54-2.65 (m, 1 H), 2.26 (d,
J=0.8 Hz, 3H), 2.20-2.34 (m, 2H), 1.89-1.99 (m, 1H). Step 4: Synthesis of
cis-2-[7-(4-methyl-1
H-imidazol-1-yl)-1,6-dioxo-1,3,4,6-tetrahydro-2
H-pyrido[1,2-a]pyrazin-2-yl]cyclobutyl methanesulfonate (
C17).
[0128] Methanesulfonyl chloride (148 µL, 1.91 mmol) was added drop-wise to a 0 °C solution
of
C16 (150 mg, 0.47 mmol) and triethylamine (530 µL, 3.82 mmol) in dichloromethane (15
mL), and the mixture was stirred for 20 minutes. Water (50 mL) was added, and the
mixture was extracted with dichloromethane (3 x 50 mL). The combined organic layers
were washed with saturated aqueous sodium chloride solution, dried over magnesium
sulfate and concentrated
in vacuo to afford the title compound as a light yellow solid. Yield: 175 mg, 0.45 mmol, 94%.
LCMS
m/
z 393.4 (M+1).
1H NMR (400 MHz, CDCl
3) δ 8.24 (d,
J=1.2 Hz, 1 H), 7.44 (d,
J=7.8 Hz, 1 H), 7.24 (d,
J=7.6 Hz, 1H), 7.13-7.15 (m, 1H), 5.30-5.35 (m, 1 H), 5.13-5.20 (m, 1 H), 4.47 (ddd,
half of ABXY pattern,
J=14.3, 7.6, 4.1 Hz, 1 H), 4.37 (ddd, half of ABXY pattern,
J=14.4, 7.4, 4.0 Hz, 1 H), 3.96 (ddd,
J=13.3, 7.4, 4.1 Hz, 1 H), 3.74 (ddd,
J=13.2, 7.6, 4.0 Hz, 1 H), 2.99 (s, 3H), 2.66-2.77 (m, 1H), 2.29 (d,
J=1.0 Hz, 3H), 2.24-2.50 (m, 3H). Step 5: Synthesis of 2-{
trans-2-[(6,7-difluoronaphthalen-1-yl)oxy]cyclobutyl}-7-(4-methyl-1
H-imidazol-1-yl)-3,4-dihydro-2
H-pyrido[1,2-
a]pyrazine-1,6-dione (
3).
[0129] A mixture of
C17 (20 mg, 51 µmol), 6,7-difluoronaphthalen-1-ol (9.2 mg, 51 µmol), and potassium carbonate
(35.6 mg, 255 µmol) in dimethyl sulfoxide (1.0 mL) was heated to 100 °C for 3 hours,
filtered, and purified by reversed phase HPLC (Column: Waters XBridge C18, 5 µm; Mobile
phase A: 0.03% ammonium hydroxide in water (v/v); Mobile phase B: 0.03% ammonium hydroxide
in acetonitrile (v/v); Gradient: 20% to 70% B). LCMS
m/
z 477.0 (M+1). Retention time: 2.58 minutes (Column: Waters Atlantis dC18, 4.6 x 50
mm, 5 µm; Mobile phase A: 0.05% trifluoroacetic acid in water (v/v); Mobile phase
B: 0.05% trifluoroacetic acid in acetonitrile (v/v); Gradient: 5% to 95% B over 4.0
minutes, linear; Flow rate: 2 mL/minute).
Example 4
2-({3-[4-Chloro-3-(trifluoromethyl)phenyl]-4,5-dihydro-1,2-oxazol-5-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (4)
[0130]

Step 1: Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-(prop-2-en-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (C18).
[0131] Compound
P1 (2.02 g, 6.73 mmol) and 2-(prop-2-en-1-ylamino)ethanol (prepared according to the
method of
M. Matteucci et al., U.S. Pat. Appl. Publ. 2007, US 20070060534 A1 20070315) (681 mg, 6.73 mmol) were combined in dichloromethane (40 mL) and
N,N-diisopropylethylamine (5.86 mL, 33.7 mmol) and the mixture was stirred until it became
homogenous.
O-(7-Azabenzotriazol-1-yl)-
N,N,N',N'-tetramethyluronium hexafluorophosphate (HATU, 97%, 7.92 g, 20.2 mmol) was added and
the reaction was stirred at room temperature for 48 hours. Aqueous sodium hydroxide
solution (1 N) was added and the mixture was extracted three times with 20% isopropanol
in chloroform. The combined organic layers were dried over sodium sulfate and concentrated
in vacuo. Purification was carried out using silica gel chromatography (Gradient: 0% to 20%
[2 M NH
3 in methanol] in dichloromethane) followed by trituration with ethyl acetate. Yield:
718 mg, 2.52 mmol, 38%. A second crop was obtained from the filtrate via a second
trituration. Yield: 221 mg, 0.77 mmol, 11%.
1H NMR (400 MHz, CDCl
3) δ 8.28 (d,
J=1.2 Hz, 1 H), 7.47 (d,
J=7.8 Hz, 1 H), 7.29 (d,
J=7.6 Hz, 1 H), 7.13-7.15 (m, 1 H), 5.83 (ddt,
J=16.8, 10.5, 6.1 Hz, 1 H), 5.28-5.35 (m, 2H), 4.34-4.38 (m, 2H), 4.21 (ddd,
J=6.0, 1.4, 1.2 Hz, 2H), 3.63-3.67 (m, 2H), 2.30 (d,
J=1.0 Hz, 3H). Step 2: Synthesis of (
E)-1-[4-chloro-3-(trifluoromethyl)phenyl]-
N-hydroxymethanimine (
C19).
[0132] To a solution of 4-chloro-3-(trifluoromethyl)benzaldehyde (93.9 mg, 0.45 mmol) in
tetrahydrofuran (0.9 mL) and ethanol (0.9 mL) was added hydroxylamine (50% in water,
0.20 mL) and the reaction was maintained at room temperature for 36 hours. Methanol
(3.0 mL) was added, the solvent was removed
in vacuo, and the residue was triturated with toluene (2 x 1 mL) to afford the title compound
as a solid. Yield: 101 mg, 0.45 mmol, 100%.
Step 3: Synthesis of 4-chloro-N-hydroxy-3-(trifluoromethyl)benzenecarboximidoyl chloride (C20).
[0133] To a solution of
C19 (101 mg, 0.45 mmol) in
N,
N-dimethylformamide (1.05 mL) was added
N-chlorosuccinimide (0.45 M in
N,
N-dimethylformamide, 1.05 mL, 0.47 mmol). The reaction mixture was heated to 60 °C
for 3 hours, then cooled to room temperature and used directly in the following step.
Step 4: Synthesis of 2-({3-[4-chloro-3-(trifluoromethyl)phenyl]-4,5-dihydro-1,2-oxazol-5-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (4).
[0134] A solution
of C18 (0.4 M in dichloromethane, 0.375 mL, 0.15 mmol) was added to the crude reaction mixture
from the previous step, followed by addition of
N-methylmorpholine (1.0 M in
N,
N-dimethylformamide, 0.60 mL, 0.60 mmol), and the reaction mixture was left at room
temperature for 66 hours. After removal of solvents
in vacuo, the residue was dissolved in 1,2-dichloroethane (5.0 mL) and treated with 50% saturated
aqueous sodium bicarbonate solution (4.0 mL). The aqueous layer was extracted with
1,2-dichloroethane (4.0 mL), and the combined organic layers were concentrated
in vacuo. Purification via reversed phase high pressure liquid chromatography (HPLC) (Column:
Phenomenex Gemini C18, 5 µm; Mobile phase A: 0.1% ammonium hydroxide in water (v/v);
Mobile phase B: 0.1% ammonium hydroxide in methanol (v/v); Gradient: 5% to 100% B)
yielded material assigned as the indicated 3,5-disubstituted dihydro-1,2-oxazole isomer
on the basis of 2-dimensional NMR experiments. This was concentrated from ethyl acetate
three times to provide the title compound as a yellow solid. Yield: 5.7 mg, 0.011
mmol, 7%. LCMS
m/
z 505.9 (M+1).
1H NMR (400 MHz, CDCl
3) δ 8.24 (d,
J=1.2 Hz, 1 H), 7.87 (d,
J=2.2 Hz, 1 H), 7.54-7.64 (m, 2H), 7.45 (d,
J=7.8 Hz, 1 H), 7.26 (d,
J=8 Hz, 1 H, assumed; partially obscured by solvent peak), 7.13-7.16 (m, 1 H), 5.11-5.20
(m, 1 H), 4.45 (ddd,
J=14.3, 7.0, 4.1 Hz, 1H), 4.31 (ddd,
J=14.3, 7.6, 4.3 Hz, 1 H), 3.87-4.04 (m, 3H), 3.74 (dd,
J=14.4, 6.7 Hz, 1 H), 3.63 (dd, half of ABX pattern,
J=17.5, 10.7 Hz, 1 H), 3.47 (dd, half of ABX pattern,
J=17.6, 7.2 Hz, 1 H), 2.28 (br s, 3H).
Example 5
2-{cis-2-[4-Fluoro-2-(trifluoromethyl)phenoxy]cyclopentyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (5)
[0135]

Step 1. Synthesis of trans-2-[(2-hydroxyethyl)amino]cyclopentanol (C21).
[0136] A mixture of 6-oxabicyclo[3.1.0]hexane (3.00 g, 35.7 mmol) and 2-aminoethanol (2.18
g, 35.7 mmol) in ethanol (15 mL) was stirred at 80 °C in a sealed tube for 16 hours.
The reaction mixture was cooled to room temperature and concentrated
in vacuo. Purification using silica gel chromatography (Eluant: methanol in dichloromethane)
afforded the title compound. Yield: 1.6 g, 11 mmol, 31%.
1H NMR (400 MHz, DMSO-
d6) δ 4.43-4.64 (br m, 2H), 3.68-3.75 (m, 1 H), 3.44 (t,
J=5.6 Hz, 2H), 2.71-2.77 (m, 1 H), 2.58-2.63 (m, 2H), 1.73-1.89 (m, 2H), 1.47-1.64
(m, 2H), 1.34-1.44 (m, 1H), 1.17-1.28 (m, 1 H).
Step 2. Synthesis of 2-[trans-2-hydroxycyclopentyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (C22).
[0137] The reaction of
C21 with
P1 was carried out according to the general procedure for the synthesis of
1 in Example 1. When the reaction was complete as assessed by thin layer chromatography,
the reaction mixture was diluted with water. The aqueous layer was extracted three
times with 5% methanol in dichloromethane, and the combined organic layers were dried
over sodium sulfate and concentrated
in vacuo. Silica gel chromatography (Eluant: methanol in dichloromethane) and trituration with
ethyl acetate afforded the title compound as an off-white solid. Yield: 340 mg, 1.04
mmol, 22%. LCMS
m/
z 329.0 (M+1).
1H NMR (300 MHz, DMSO-
d6) δ 8.27 (s, 1 H), 7.80 (d,
J=7.3 Hz, 1 H), 7.42 (s, 1 H), 7.08 (d,
J=7.3 Hz, 1 H), 4.85-4.98 (br m, 1 H), 4.44-4.60 (m, 1 H), 4.03-4.36 (m, 3H), 3.59-3.68
(m, 2H), 2.15 (s, 3H), 1.42-1.96 (m, 6H). Step 3. Synthesis of 2-{
cis-2-[4-fluoro-2-(trifluoromethyl)phenoxy]cyclopentyl}-7-(4-methyl-1
H-imidazol-1-yl)-3,4-dihydro-2
H-pyrido[1,2-
a]pyrazine-1,6-dione (
5).
[0138] Triphenylphosphine (12.2 mg, 0.046 mmol) was added to a solution of
C22 (11 mg, 0.033 mmol) and 4-fluoro-2-(trifluoromethyl)phenol (7.4 mg, 0.041 mmol) in
tetrahydrofuran (0.5 mL). The reaction mixture was treated with a solution of diisopropyl
azodicarboxylate (94%, 0.015 mL, 0.071 mmol) in tetrahydrofuran, and heated at 50
°C for 18 hours, then at 90 °C for 4 hours. The same quantities of triphenylphosphine
and diisopropyl azodicarboxylate were again added, and heating was continued at 90
°C for an additional 4 days. The mixture was concentrated
in vacuo. Purification by reversed phase HPLC (Column: Waters XBridge C18, 5 µm; Mobile phase
A: 0.03% ammonium hydroxide in water (v/v); Mobile phase B: 0.03% ammonium hydroxide
in acetonitrile (v/v); Gradient: 40% to 100% B) afforded the title compound. Yield:
2.8 mg, 5.7 µmol, 17%. LCMS
m/
z 491.1 (M+1). Retention time: 2.32 minutes (Column: Waters Atlantis dC18, 4.6 x 50
mm, 5 µm; Mobile phase A: 0.05% trifluoroacetic acid in water (v/v); Mobile phase
B: 0.05% trifluoroacetic acid in acetonitrile (v/v); Gradient: 5% to 95% B over 4.0
minutes, linear; Flow rate: 2 mL/minute).
Example 6
7-(4-Methyl-1H-imidazol-1-yl)-2-({(2S,3S,5R)-3-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (6)
[0139]

Step 1. Synthesis of (5S)-5-({[tert-butyl(diphenyl)silyl]oxy}methyl)furan-2(5H)-one (C23).
[0140] Imidazole (1.22 g, 17.6 mmol) and
tert-butyl(diphenyl)silyl chloride (3.95 mL, 15.4 mmol) were added to a solution of (5
S)-5-(hydroxymethyl)furan-2(5H)-one (1.60 g, 14.0 mmol) in
N,
N-dimethylformamide (50 mL), and the reaction mixture was stirred at room temperature
for 18 hours. It was then partitioned between
tert-butyl methyl ether and water; the organic layer was washed twice with water, dried
over magnesium sulfate, filtered, and concentrated
in vacuo. Silica gel chromatography (Gradient: 5% to 30% ethyl acetate in heptane) afforded
the product as a white solid. Yield: 5.20 g, quantitative.
1H NMR (400 MHz, CDCl
3) δ 7.63-7.66 (m, 4H), 7.38-7.49 (m, 7H), 6.19 (dd,
J=5.7, 2.0 Hz, 1 H), 5.06-5.10 (m, 1 H), 3.93 (dd, half of ABX pattern,
J=10.9, 4.5 Hz, 1 H), 3.88 (dd, half of ABX pattern,
J=10.8, 5.0 Hz, 1 H), 1.05 (s, 9H). Step 2. Synthesis of (4
S,5
S)-5-({[
tert-butyl(diphenyl)silyl]oxylmethyl)-4-methyldihydrofuran-2(3H)-one (
C24).
[0141] Copper(l) bromide-dimethyl sulfide complex (99%, 3.65 g, 17.6 mmol) was suspended
in diethyl ether (25 mL) and cooled to 0 °C. After drop-wise addition of methyllithium
(1.6 M solution in diethyl ether, 22.0 mL, 35.2 mmol), the reaction mixture was cooled
to -25 °C. A solution of
C23 (3.10 g, 8.79 mmol) in diethyl ether (20 mL) was added at a rate such that the reaction
temperature remained below -20 °C. After 30 minutes, the reaction was quenched with
saturated aqueous ammonium chloride solution (50 mL) and warmed to room temperature.
The mixture was extracted with diethyl ether, and the combined organic layers were
dried over magnesium sulfate, filtered, and concentrated under reduced pressure to
afford the product as a thick oil, which was used in the following step without additional
purification. Yield: 3.20 g, 8.68 mmol, 99%.
1H NMR (400 MHz, CDCl
3) δ 7.65-7.69 (m, 4H), 7.38-7.48 (m, 6H), 4.09-4.13 (m, 1 H), 3.87 (dd, half of ABX
pattern, J=11.5, 3.3 Hz, 1 H), 3.73 (dd, half of ABX pattern, J=11.5, 3.5 Hz, 1 H),
2.83 (dd, J=17.6, 8.8 Hz, 1 H), 2.53-2.64 (m, 1 H), 2.18 (dd, J=17.4, 7.0 Hz, 1 H),
1.14 (d, J=7.0 Hz, 3H), 1.06 (s, 9H).
Step 3. Synthesis of (4S,5S)-5-({[tert-butyl(diphenyl)silyl]oxy}methyl)-4-methyl-2-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-ol
(C25).
[0142] Finely ground cerium chloride (95%, 6.98 g, 26.9 mmol) was heated at 135 °C under
high vacuum for 2 hours, and then cooled to room temperature. To this material was
added a solution of
C24 (3.20 g, 8.68 mmol) in tetrahydrofuran (40 mL); the resulting mixture was stirred
for 1 hour and then cooled to an internal temperature of -45 °C. [4-(Trifluoromethyl)phenyl]magnesium
bromide (0.48 M solution in tetrahydrofuran, 54.3 mL, 26.1 mmol) was added at a rate
that maintained the reaction temperature below -40 °C, and stirring was continued
for 1 hour. The reaction was quenched with saturated aqueous ammonium chloride solution
(30 mL) and filtered through Celite. The filtrate was extracted with
tert-butyl methyl ether, and the combined organic layers were washed with saturated aqueous
sodium chloride solution, dried over sodium sulfate, filtered and concentrated
in vacuo. The product, obtained as an oil, was used without additional purification. Yield:
4.4 g, 8.6 mmol, 99%. Step 4. Synthesis of
tert-butyl({(2
S,3
S,5
R)-3-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methoxy)diphenylsilane
(
C26).
[0143] Compound
C25 (4.4 g, 8.6 mmol) was dissolved in dichloromethane (50 mL) and cooled to -78 °C.
Triethylsilane (98%, 6.97 mL, 42.8 mmol) was added, followed by drop-wise addition
of boron trifluoride diethyl etherate (98%, 5.50 mL, 42.7 mmol). After 1 hour at -78
°C, the reaction was quenched with saturated aqueous sodium bicarbonate solution,
warmed to room temperature, and extracted with
tert-butyl methyl ether. The combined organic layers were dried over magnesium sulfate,
filtered, combined with the product of an identical reaction carried out on 2.5 g
(4.9 mmol) of
C25, and concentrated
in vacuo. Two chromatographic purifications on silica gel [1) Gradient: 0% to 2.5% ethyl acetate
in heptane; 2) Eluent: 1% ethyl acetate in heptane] afforded the product (the second-eluting
isomer from the column) as an oil. Yield: 1.19 g, 2.39 mmol, 18%. The indicated relative
stereochemistry was assigned on the basis of
1H NMR studies carried out on the product of the following step. Products of related
reactions (
vide infra) were assigned corresponding stereochemistry.
1H NMR (400 MHz, CDCl
3) δ 7.70-7.75 (m, 4H), 7.51 (s, 4H), 7.36-7.48 (m, 6H), 5.10 (dd,
J=7.0, 6.8 Hz, 1H), 3.91 (dd, half of ABX pattern,
J=10.9, 4.1 Hz, 1 H), 3.80 (dd, half of ABX pattern,
J=10.9, 4.3 Hz, 1 H), 3.72 (ddd,
J=7.1, 4.1, 4.0 Hz, 1 H), 2.29-2.41 (m, 1 H), 1.97-2.09 (m, 2H), 1.09 (s, 9H), 1.07
(d,
J=6.8 Hz, 3H).
Step 5. Synthesis of {(2S,3S,5R)-3-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methanol (C27).
[0144] Tetrabutylammonium fluoride (1.0 M solution in tetrahydrofuran, 2.62 mL, 2.62 mmol)
was added to a solution of
C26 (1.19 g, 2.39 mmol) in tetrahydrofuran (15 mL). After 1 hour at room temperature,
tert-butyl methyl ether was added, and the mixture was washed with water, dried over sodium
sulfate, filtered, and concentrated
in vacuo. Chromatography on silica gel (Gradient: 10% to 50% ethyl acetate in heptane) provided
the product as a colorless oil. Yield: 530 mg, 2.04 mmol, 85%. The indicated relative
stereochemistry was supported by NOE studies on
C27 and its aryl stereoisomer, which was obtained in the same way from the first-eluting
isomer of the previous step.
1H NMR (400 MHz, CDCl
3) δ 7.60 (br d,
J=8.0 Hz, 2H), 7.44-7.49 (m, 2H), 5.09 (dd,
J=7.2, 7.0 Hz, 1H), 3.84-3.91 (m, 1H), 3.67-3.75 (m, 2H), 2.16-2.27 (m, 1H), 2.05-2.10
(m, 2H), 1.90 (br s, 1 H), 1.13 (d, J=6.8 Hz, 3H).
Step 6. Synthesis of {(2S,3S,5R)-3-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl methanesulfonate
(C28).
[0145] The product, obtained as an oil, was prepared from
C27 according to the general procedure for the synthesis of
C8 in Example 1. Yield: 689 mg, 2.04 mmol, 100%.
1H NMR (400 MHz, CDCl
3) δ 7.61 (br d,
J=8.1 Hz, 2H), 7.45-7.49 (m, 2H), 5.13 (br dd,
J=7.1, 6.9 Hz, 1 H), 4.43 (dd, half of ABX pattern,
J=11.0, 3.4 Hz, 1H), 4.37 (dd, half of ABX pattern,
J=11.0, 5.6 Hz, 1 H), 3.90 (ddd,
J=7.2, 5.6, 3.3 Hz, 1H), 3.07 (s, 3H), 2.18-2.30 (m, 1H), 2.07-2.12 (m, 2H), 1.17 (d,
J=6.8 Hz, 3H).
Step 7. Synthesis of 2-[({(2S,3S,5R)-3-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)amino]ethanol
(C29).
[0146] Compound
C28 (689 mg, 2.04 mmol) was combined with 2-aminoethanol (96%, 2 mL, 30 mmol) and heated
to 85 °C for 2 hours. After cooling to room temperature, the reaction mixture was
partitioned between
tert-butyl methyl ether and water (10 mL). The organic layer was dried over sodium sulfate,
filtered, and concentrated
in vacuo to provide the product as a thick oil. Yield: 618 mg, 2.04 mmol, 100%. LCMS
m/
z 304.2 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 7.59 (br d,
J=8 Hz, 2H), 7.42-7.47 (m, 2H), 5.05 (br dd,
J=6.8, 6.6 Hz, 1 H), 3.69-3.75 (m, 1H), 3.67 (t,
J=5.3 Hz, 2H), 2.79-2.94 (m, 4H), 2.01-2.12 (m, 3H), 1.11 (d,
J=6.2 Hz, 3H).
Step 8. Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,3S,5R)-3-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (6).
[0147] To a solution of
P2 (514 mg, 2.01 mmol) and
C29 (610 mg, 2.01 mmol) in dichloromethane (20 mL) was added
N,
N-diisopropylethylamine (1.23 mL, 7.06 mmol) and
O-(7-azabenzotriazol-1-yl)-
N,
N,
N',
N-tetramethyluronium hexafluorophosphate (HATU, 99%, 1.78 g, 4.63 mmol). The reaction
mixture was heated at reflux for 2 hours, then diluted with additional dichloromethane
and washed with saturated aqueous sodium bicarbonate solution, with water, and with
saturated aqueous sodium chloride solution. The organic layer was dried over sodium
sulfate, filtered and concentrated
in vacuo.The residue was purified via silica gel chromatography (Gradient: 0% to 5% [∼0.7 M
ammonia in methanol] in ethyl acetate). The off-white foam obtained from the column
was treated with ethyl acetate; after standing, a precipitate formed. This was isolated
by filtration and washed with small amounts of ethyl acetate and
tert-butyl methyl ether to afford the product as a white solid. Yield: 243 mg, 0.499 mmol,
25%. LCMS
m/
z 487.3 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.33 (d,
J=1.3 Hz, 1 H), 7.62 (br d,
J=8.1 Hz, 2H), 7.49 (d,
J=7.7 Hz, 1 H), 7.43 (br d,
J=8 Hz, 2H), 7.29 (d,
J=7.7 Hz, 1 H), 7.15-7.17 (m, 1 H), 5.04 (br dd,
J=7, 7 Hz, 1 H), 4.40 (ddd, half of ABXY pattern,
J=14.2, 7.2, 4.2 Hz,
[0148] 1 H), 4.30 (ddd, half of ABXY pattern,
J=14.2, 7.7, 4.2 Hz, 1 H), 4.22 (dd,
J=14.0, 2.5 Hz, 1 H), 3.99 (ddd,
J=13.5, 7.9, 4.2 Hz, 1 H), 3.79-3.87 (m, 2H), 3.46 (dd,
J=14.0, 8.0 Hz, 1 H), 2.32 (d,
J=1.0 Hz, 3H), 2.06-2.11 (m, 3H), 1.19-1.22 (m, 3H).
Example 7
2-({(2S,4R,5S)-4-Fluoro-5-{4-(trifluoromethyl)phenylltetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (7)
[0149]

Step 1. Synthesis of (5S)-5-({[tert-butyl(diphenyl)silyl]oxy}methyl)dihydrofuran-2(3H)-one (C30).
[0150] (5
S)-5-(Hydroxymethyl)dihydrofuran-2(3
H)-one was converted to the product according to the general procedure for the synthesis
of
C23 in Example 6. In this case, the crude product was recrystallized from hexanes, and
the product was obtained as a white solid. Yield: 10.6 g, 29.9 mmol, 56%.
1H NMR (400 MHz, CDCl
3) δ 7.65-7.69 (m, 4H), 7.38-7.48 (m, 6H), 4.58-4.64 (m, 1H), 3.89 (dd, half of ABX
pattern,
J=11.3, 3.3 Hz, 1 H), 3.70 (dd, half of ABX pattern,
J=11.3, 3.3 Hz, 1 H), 2.69 (ddd, half of ABXY pattern,
J=17.7, 10.2, 7.1 Hz, 1 H), 2.52 (ddd, half of ABXY pattern,
J=17.8, 10.0, 6.6 Hz, 1 H), 2.18-2.35 (m, 2H), 1.07 (s, 9H).
Step 2. Synthesis of (3R,5S)-5-({[tert-butyl(diphenyl)silyl]oxy}methyl)-3-fluorodihydrofuran-2(3H)-one (C31).
[0151] A solution of
C30 (5.00 g, 14.1 mmol) and
N-fluoro-
N-(phenylsulfonyl)benzenesulfonamide (4.45 g, 14.1 mmol) in tetrahydrofuran (50 mL)
was cooled to -78 °C. Lithium bis(trimethylsilyl)amide (1.0 M solution in tetrahydrofuran,
14.1 mL, 14.1 mmol) was added drop-wise over 15 minutes, and the reaction mixture
was stirred at -78 °C for 2 hours. The reaction was quenched with saturated aqueous
ammonium chloride solution (15 mL), warmed to room temperature, and partitioned between
tert-butyl methyl ether and saturated aqueous sodium bicarbonate solution. The organic
layer was washed with saturated aqueous sodium bicarbonate solution and with saturated
aqueous sodium chloride solution, then dried over magnesium sulfate, filtered, and
concentrated
in vacuo. After purification via silica gel chromatography (Gradient: 5% to 30% ethyl acetate
in heptane), recrystallization from hexanes afforded the product as a white solid.
Yield: 1.64 g, 4.40 mmol, 31%.
1H NMR (400 MHz, CDCl
3) δ 7.61-7.6 (m, 4H), 7.39-7.50 (m, 6H), 5.50 (ddd,
J=52.7, 8.6, 7.6 Hz, 1 H), 4.69-4.74 (m, 1 H), 3.93 (ddd,
J=11.6, 2.2, 2.2 Hz, 1H), 3.62 (dd,
J=11.5, 2.0 Hz, 1 H), 2.71 (dddd,
J=13.6, 9.4, 8.6, 2.4 Hz, 1 H), 2.55 (dddd,
J=27.7, 13.6, 8.8, 7.7 Hz, 1 H), 1.06 (s, 9H). Step 3. Synthesis of (3
R,5
S)-5-({[
tert-butyl(diphenyl)silyl]oxy}methyl)-3-fluoro-2-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-ol
(
C32).
[0152] Compound
C31 was converted to the product according to the general procedure for the synthesis
of
C25 in Example 6. The product was obtained as an oil, which was taken directly to the
following step. Yield: 2.20 g, 4.24 mmol, 99%.
Step 4. Synthesis of tert-butyl({(2S,4R,5S)-4-fluoro-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methoxy)diphenylsilane
(C33).
[0153] The product was prepared from
C32 using the general procedure for synthesis of
C26 in Example 6. In this case, purification was carried out using silica gel chromatography
(Gradient: 0% to 5% ethyl acetate in heptane). Yield: 890 mg, 1.77 mmol, 42%. The
indicated relative stereochemistry was consistent with NOE studies carried out on
the product.
1H NMR (400 MHz, CDCl
3) δ 7.69-7.74 (m, 4H), 7.58-7.62 (m, 2H), 7.53 (br d, half of br AB quartet,
J=8 Hz, 2H), 7.37-7.49 (m, 6H), 5.22 (br d,
J=26.6 Hz, 1 H), 4.93-5.11 (m, 1 H), 4.43-4.50 (m, 1 H), 4.10 (dd,
J=11.4, 3.2 Hz, 1 H), 3.84 (dd,
J=11.3, 3.5 Hz, 1 H), 2.08-2.32 (m, 2H), 1.11 (s, 9H).
Step 5. Synthesis of {(2S,4R,5S)-4-fluoro-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methanol (C34).
[0154] The product, obtained as a thick oil that slowly solidified, was prepared from
C33 according to the general procedure for the synthesis of
C27 in Example 6. Yield: 392 mg, 1.48 mmol, 84%. The indicated relative stereochemistry
was consistent with NOE studies carried out on this sample.
1H NMR (400 MHz, CDCl
3) δ 7.64 (br d,
J=8 Hz, 2H), 7.52 (br d,
J=8 Hz, 2H), 5.19 (br d,
J=26.8 Hz, 1 H), 5.04 (dddd,
J=55.0, 5.1, 1.8, 1.6 Hz, 1 H), 4.44-4.51 (m, 1H), 4.03 (dd,
J=12.0, 2.8 Hz, 1 H), 3.77 (dd,
J=12.0, 4.8 Hz, 1 H), 2.00-2.25 (m, 2H), 1.81 (br s, 1 H).
Step 6. Synthesis of {(2S,4R,5S)-4-fluoro-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl methanesulfonate
(C35).
[0155] The product, obtained as a thick oil that slowly solidified, was prepared from
C34 using the general procedure for the synthesis of
C8 in Example 1. Yield: 505 mg, 1.48 mmol, 100%.
1H NMR (400 MHz, CDCl
3) δ 7.65 (br d,
J=8 Hz, 2H), 7.52 (br d,
J=8 Hz, 2H), 5.25 (br d,
J=26.6 Hz, 1 H), 4.98-5.15 (m, 1 H), 4.60-4.67 (m, 1 H), 4.57 (dd, half of ABX pattern,
J=11.3, 2.9 Hz, 1 H), 4.45 (dd, half of ABX pattern,
J=11.3, 4.9 Hz, 1 H), 3.10 (s, 3H), 2.30 (dddd,
J=19.9, 14.1, 5.2, 1.2 Hz, 1 H), 2.04 (dddd,
J=36.8, 14.1, 10.7, 5.0 Hz, 1 H).
Step 7. Synthesis of 2-[({(2S,4R,5S)-4-fluoro-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)amino]ethanol
(C36).
[0156] The product, obtained as an oil, was prepared from
C35 using the general procedure for the synthesis of
C29 in Example 6. Yield: 454 mg, 1.48 mmol, 100%. LCMS
m/
z 308.1 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 7.63 (br d,
J=8 Hz, 2H), 7.49 (br d,
J=8 Hz, 2H), 5.16 (br d,
J=27.3 Hz, 1 H), 4.93-5.10 (m, 1 H), 4.44-4.52 (m, 1 H), 3.69 (dd,
J=5.7, 4.9 Hz, 2H), 3.01 (dd, half of ABX pattern,
J=12.5, 3.5 Hz, 1 H), 2.84-2.96 (m, 3H), 2.24 (dddd,
J=21.1, 14.1, 5.0, 1.2 Hz, 1H), 1.90 (dddd,
J=37.1, 14.0, 10.8, 5.3 Hz, 1 H).
Step 8. Synthesis of 2-({(2S,4R,5S)-4-fluoro-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (7).
[0157] Compound
C36 was converted to the product according to the general method described for synthesis
of
6 in Example 6. The product was obtained as a solid. Yield: 50 mg, 0.10 mmol, 7%. LCMS
m/
z 491.3 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.39 (br s, 1 H), 7.67 (br d,
J=8 Hz, 2H), 7.51 (d,
J=7.8 Hz, 1 H), 7.48 (br d,
J=8 Hz, 2H), 7.31 (d,
J=7.6 Hz, 1 H), 7.16-7.18 (m, 1 H), 5.17 (br d,
J=27.3 Hz, 1 H), 5.04 (br dd,
J=55, 5 Hz, 1H), 4.57-4.65 (m, 1H), 4.32-4.47 (m, 2H), 4.30 (dd,
J=14.2, 2.7 Hz, 1 H), 4.02 (ddd,
J=13.5, 7.6, 4.1 Hz, 1 H), 3.85 (ddd,
J=13.5, 7.2, 4.1 Hz, 1H), 3.53 (dd,
J=14.1, 8.2 Hz, 1 H), 2.33 (d,
J=1.0 Hz, 3H), 2.32-2.43 (m, 1 H), 1.77-1.95 (m, 1H).
Example 8
7-(4-Methyl-1H-imidazol-1-yl)-2-[(1S)-1-{(2S,5R)-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethy]-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (8)
[0158]

Step 1. Synthesis of (2S,3S)-2-(dibenzylamino)hex-5-yn-3-ol (C38).
[0159] n-Butyllithium (2.5 M solution in hexanes, 131 mL, 328 mmol) was added drop-wise over
approximately 9 minutes to a -70 °C solution of ethynyl(trimethyl)silane (46.3 mL,
328 mmol) in tetrahydrofuran (1 L), and the reaction mixture was stirred at -70 °C
for 30 minutes. A solution of (1
S)-
N,
N-dibenzyl-1-[(2
R)-oxiran-2-yl]ethanamine (
C37, see
J. Barluenga et al., J. Org. Chem. 1995, 60, 6696-6699) (79.6 g, 298 mmol) in tetrahydrofuran (250 mL) was added; the reaction mixture,
which had warmed as a result of the addition, was recooled to approximately -65 °C,
and boron trifluoride diethyl etherate (37.6 mL, 298 mmol) was added. The reaction
mixture was then stirred for 1.5 hours at -70 °C. Saturated aqueous ammonium chloride
solution (200 mL) was added, and the mixture was allowed to warm to room temperature.
The organic layer was washed with saturated aqueous sodium chloride solution, and
the aqueous layer from the quenched reaction was extracted with ethyl acetate. The
combined organic layers were dried over magnesium sulfate, filtered, and concentrated
in vacuo. The residue was dissolved in methanol (500 mL), treated with potassium carbonate
(206 g, 1.49 mol) and stirred at room temperature for 18 hours. After filtration through
Celite and rinsing with ethyl acetate, the crude product solution was concentrated
in vacuo, dissolved in diethyl ether (1 L), washed with water (250 mL) and with saturated aqueous
sodium chloride solution (75 mL), dried over magnesium sulfate, filtered and concentrated
under reduced pressure. After seeding with a small sample of solid product, heptane
(60 mL) was added, and the mixture was vigorously stirred for 5 minutes, then filtered;
the isolated solid was rinsed with heptane (50 mL) to afford the product as a pale
orange solid. Yield: 37.3 g, 127 mmol, 43%.
1H NMR (400 MHz, CDCl
3) δ 7.22-7.36 (m, 10H), 4.53 (s, 1 H), 3.84 (d,
J=13.1 Hz, 2H), 3.63 (ddd,
J=9.5, 5.8, 4.0 Hz, 1 H), 3.34 (d,
J=13.3 Hz, 2H), 2.80 (dq,
J=9.4, 6.6 Hz, 1 H), 2.46 (ddd, half of ABXY pattern,
J=17.0, 4.0, 2.6 Hz, 1H), 2.21 (ddd, half of ABXY pattern,
J=17.0, 6.0, 2.6 Hz, 1H), 1.86 (dd,
J=2.7, 2.5 Hz, 1H), 1.07 (d,
J=6.8 Hz, 3H).
Step 2. Synthesis of (2S,3S)-2-(dibenzylamino)-6-[4-(trifluoromethyl)phenyl]hex-5-yn-3-ol (C39).
[0160] Compound
C38 (25.6 g, 87.2 mmol) was added to a mixture of 1-bromo-4-(trifluoromethyl)benzene
(12.2 mL, 87.1 mmol), tetrakis(triphenylphosphine)palladium(0) (5.04 g, 4.36 mmol)
and copper(l) iodide (997 mg, 5.24 mmol) in triethylamine (previously degassed with
nitrogen via a dispersion tube for 20 minutes, 250 mL) and the reaction mixture was
stirred at 75 °C for 1.75 hours. After cooling to room temperature, the reaction mixture
was filtered through Celite and the filter pad was rinsed with diethyl ether (300
mL). The filtrate was poured into saturated aqueous ammonium chloride solution (250
mL); the aqueous layer was extracted with diethyl ether (250 mL), and the combined
organic layers were washed with saturated aqueous sodium chloride solution, dried
over magnesium sulfate, filtered, and concentrated
in vacuo. Heptane (150 mL) was added to the residue, and the mixture was again concentrated
under reduced pressure. This material was combined with the corresponding solids from
a similar reaction carried out on
C38 (25.0 g, 85.2 mmol) and purified via silica gel chromatography (Eluent: 25% ethyl
acetate in heptane). The isolated solid (∼60 g) was recrystallized from heptane (250
mL) to afford the product as a reddish-brown solid. Yield: 47.2 g, 108 mmol, 63%.
1H NMR (400 MHz, CDCl
3) δ 7.49 (br d,
J=8 Hz, 2H), 7.20-7.33 (m, 12H), 4.55 (br s, 1 H), 3.87 (d,
J=13.1 Hz, 2H), 3.70-3.76 (m, 1 H), 3.36 (d,
J=13.3 Hz, 2H), 2.93 (dq,
J=9.4, 6.7 Hz, 1 H), 2.76 (dd, half of ABX pattern,
J=17.4, 3.9 Hz, 1 H), 2.48 (dd, half of ABX pattern,
J=17.3, 5.0 Hz, 1 H), 1.12 (d,
J=6.7 Hz, 3H).
Step 3. Synthesis of (1S)-N,N-dibenzyl-1-{(2S)-5-[4-(trifluoromethyl)phenyl]-2,3-dihydrofuran-2-yl}ethanamine (C40).
[0161] Trifluoroacetic acid (18 mL, 230 mmol) and di-µ-chlorodichlorobis(ethylene)diplatinum(II)
(97%, 3.76 g, 6.20 mmol) were added to a solution of
C39 (49.4 g, 113 mmol) in dichloromethane (80 mL). After 1.5 hours at room temperature,
the reaction mixture was poured into aqueous sodium hydroxide solution (0.5 M, 500
mL), and the aqueous layer was extracted with dichloromethane (250 mL). The combined
organic layers were dried over sodium sulfate, filtered, and concentrated
in vacuo. The residue was combined with crude product from a similar reaction run on
C39 (10.0 g, 22.9 mmol) and rapidly purified on a short column by silica gel chromatography
(Eluent: 2% ethyl acetate in heptane), providing the product as a light yellow-orange
solid. Yield: 46.5 g, 106 mmol, 78%.
1H NMR (400 MHz, CDCl
3) δ 7.65 (br AB quartet,
JAB=8.2 Hz, Δν
AB=40.1 Hz, 4H), 7.40 (br d,
J=8 Hz, 4H), 7.23-7.28 (m, 4H), 7.16-7.22 (m, 2H), 5.46 (dd,
J=2.9, 2.7 Hz, 1 H), 4.80 (ddd,
J=9.8, 9.6, 7.2 Hz, 1 H), 3.95 (d,
J=13.8 Hz, 2H), 3.63 (d,
J=13.8 Hz, 2H), 2.96-3.04 (m, 1 H), 2.73 (br dd,
J=9.8, 2.5 Hz, 2H), 1.18 (d,
J=6.8 Hz, 3H).
Step 4. Synthesis of (1S)-1-{(2S,5R)-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethanamine (C41).
[0162] Palladium hydroxide on carbon (∼50% water, 10 wt% palladium, 7.1 g, 5 mmol) was added
to a slurry of
C40 (22.0 g, 50.3 mmol) and ammonium formate (80.2 g, 1.27 mol) in methanol (500 mL),
and the reaction mixture was stirred for 2.5 hours at room temperature, then combined
with similar reactions run on
C41 (24.5 g, 56.0 mmol) and filtered through Celite, rinsing with methanol (1 L). The
filtrate was concentrated
in vacuo and treated with aqueous sodium hydroxide solution (0.2 M, roughly 800 mL), while
keeping the pH at approximately 9. This was extracted three times with ethyl acetate
(0.5 L, 1 L and 0.5 L), and the combined organic layers were washed with saturated
aqueous sodium chloride solution, dried over magnesium sulfate, and concentrated under
reduced pressure to afford the product as a light yellow oil. Hydrogenation was assumed
to have occurred on the less hindered face; the assigned stereochemistry was also
supported by the IC
50 obtained on the final product 8, which indicated that the tetrahydrofuran moiety
bore the substituents in a
cis orientation (see Table 1). Yield: 26.3 g, 101 mmol, 95%.
1H NMR (400 MHz, CDCl
3) δ 7.53 (br AB quartet,
JAB=8 Hz, Aν
AB=50 Hz, 4H), 4.96 (dd,
J=7.4, 7.0 Hz, 1H), 3.70-3.77 (m, 1 H), 2.93-3.01 (m, 1H), 2.33-2.43 (m, 1H), 2.00-2.10
(m, 1H), 1.66-1.85 (m, 2H), 1.12 (d,
J=6.4 Hz, 3H).
Step 5. Synthesis of 1-(2-hydroxyethyl)-5-(4-methyl-1H-imidazol-1-yl)-6-oxo-N-[(1S)-1-{(2S,5R)-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-1,6-dihydropyridine-2-carboxamide
(C42).
[0163] Bis(trimethylaluminum)-1,4-diazabicyclo[2.2.2]octane adduct (97%, 27.8 g, 105 mmol)
was added to a solution of
C41 (21.0 g, 81.0 mmol) in tetrahydrofuran (800 mL), and the mixture was heated to 40
°C for 45 minutes. Compound
P3 (28 g, 110 mmol) was added, and the reaction mixture was heated at reflux for 2 hours,
then cooled in an ice bath to approximately 5 °C. With vigorous stirring, aqueous
hydrochloric acid (1 N, 75 mL) was slowly added drop-wise {
Caution: gas evolution does not begin immediately!}
, bringing the pH to 7-8. Aqueous sodium hydroxide solution (1 M, 75 mL) was added,
and the mixture was filtered through Celite, rinsing with ethyl acetate (3 x 500 mL).
The organic layer from the filtrate was washed with aqueous sodium hydroxide solution
(1 M, 150 mL), with water (250 mL), and with saturated aqueous sodium chloride solution
(100 mL), then dried over magnesium sulfate, filtered, and concentrated
in vacuo. The resulting pasty solid was dried under vacuum at 50 °C, then cooled, stirred with
diethyl ether (300 mL) for 20 minutes, and filtered to provide the product as a cream-colored
solid, still containing roughly 13% diethyl ether by weight, via
1H NMR analysis. Corrected yield: 31.0 g, 61.4 mmol, 76%. This material was used in
the following step.
1H NMR (400 MHz, CDCl
3) δ 8.19 (br d,
J=8.8 Hz, 1 H), 7.99 (d,
J=1.2 Hz, 1H), 7.58 (br AB quartet,
JAB=8.2 Hz, Δν
AB=28.5 Hz, 4H), 7.17 (d,
J=7.6 Hz, 1H), 6.98-7.00 (m, 1H), 6.34 (d,
J=7.6 Hz, 1 H), 5.00 (dd,
J=7.4, 6.6 Hz, 1 H), 4.34-4.41 (m, 1 H), 4.28-4.33 (m, 2H), 4.06-4.14 (m, 1 H), 3.96-4.03
(m, 1 H), 3.71-3.78 (m, 1 H), 2.38-2.47 (m, 1H), 2.15-2.23 (m, 1H), 2.12 (d,
J=1.0 Hz, 3H), 1.80-1.95 (m, 2H), 1.35 (d,
J=6.6 Hz, 3H).
Step 6. Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-[(1S)-1-{(2S,5R)-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (8).
[0164] Compound
C42 (from the previous step; corrected weight: 30.9 g, 61.2 mmol) and triethylamine (16
mL, 110 mmol) were combined in tetrahydrofuran (1 L) and cooled in an ice bath. Methanesulfonyl
chloride (98%, 8.5 mL, 110 mmol) was added drop-wise over 3 to 5 minutes, whereupon
the cooling bath was removed. The reaction mixture was stirred at room temperature
for 40 minutes, then cooled again in an ice bath, treated with 1,3,4,6,7,8-hexahydro-2
H-pyrimido[1,2-
a]pyrimidine (97%, 30.2 g, 210 mmol), and stirred for 2.5 hours. Ethyl acetate (500
mL) was added to the cold reaction mixture, which was subsequently washed with water
(2 x 500 mL). The aqueous layer was extracted with ethyl acetate (500 mL) and the
combined organic layers were washed with saturated aqueous sodium chloride solution
(250 mL), dried over magnesium sulfate, filtered, and concentrated
in vacuo. Silica gel chromatography (Eluents: ethyl acetate, then 5% methanol in ethyl acetate)
afforded fractions containing the product; these were concentrated to a volume of
roughly 500 mL and the resulting slurry was stirred under nitrogen for 18 hours. After
being cooled to 7 °C, the slurry was filtered to provide a white solid (22 g). The
filtrate was concentrated under reduced pressure, and the resulting solid was slurried
with diethyl ether (70 mL) and isolated by filtration; this material was recrystallized
from ethyl acetate (60 mL), cooled in ice, filtered, and rinsed with ice-cold ethyl
acetate to afford a cream-colored solid (5.5 g). The two lots were combined and recrystallized
from ethyl acetate (330 mL) to afford the product as a white solid. Yield: 24.3 g,
49.9 mmol, 82%. LCMS
m/
z 487.3 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.25 (d,
J=1.2 Hz, 1 H), 7.58 (br d,
J=8 Hz, 2H), 7.47 (d,
J=7.6 Hz, 1H), 7.42 (brd,
J=8 Hz, 2H), 7.30 (d,
J=7.6 Hz, 1H), 7.12-7.14 (m, 1H), 4.92 (dd,
J=7.4, 6.8 Hz, 1 H), 4.82-4.90 (m, 1 H), 4.26-4.39 (m, 2H), 4.09-4.16 (m, 1 H), 3.79
(ddd, half of ABXY pattern,
J=13.3, 7.3, 4.3 Hz, 1 H), 3.67 (ddd, half of ABXY pattern,
J=13.3, 7.2, 4.3 Hz, 1 H), 2.37-2.45 (m, 1H), 2.30 (d,
J=1.0 Hz, 3H), 2.15-2.24 (m, 1 H), 1.77-1.91 (m, 2H), 1.33 (d,
J=7.0 Hz, 3H).
Example 9
2-[(1S)-1-{(2S,5R)-5-[4-Chloro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (9)
[0165]

Step 1. Synthesis of tert-butyl [(2S)-4-chloro-3-oxobutan-2-yl]carbamate (C43).
[0166] A solution of chloroacetic acid (23.2 g, 246 mmol) in tetrahydrofuran (100 mL) was
added over 35 minutes to a -78 °C solution of lithium diisopropylamide in tetrahydrofuran
(2.05 M, 240 mL, 492 mmol), at a rate that kept the internal temperature below -65
°C. After 30 minutes, the reaction mixture was quickly transferred into a (dry ice)-jacketed
addition funnel and added over 5 minutes to a solution of methyl
N-(
tert-butoxycarbonyl)-L-alaninate (10.0 g, 49.2 mmol) in tetrahydrofuran (120 mL). Mechanical
stirring was used for this reaction. The mixture was stirred for 30 minutes, during
which time the reaction mixture warmed to 0 °C. It was cooled to -78 °C and treated
over 10 minutes with a solution of acetic acid (41 mL, 720 mmol) in tetrahydrofuran
(41 mL). At this point, the flask was immersed in an ice bath, and stirring was continued
for 1.5 hours, while the reaction warmed to 5 °C. Water (250 mL) was added, followed
by diethyl ether (400 mL); the organic layer was washed with saturated aqueous sodium
bicarbonate solution (150 mL) and with saturated aqueous sodium chloride solution
(50 mL), dried over magnesium sulfate, filtered, and concentrated
in vacuo to afford the product as a waxy, light yellow solid. Yield: 9.47 g, 42.7 mmol, 87%.
1H NMR (400 MHz, CDCl
3) δ 5.11 (br d, J=6 Hz, 1 H), 4.48-4.58 (m, 1 H), 4.28 (AB quartet,
JAB=15.9 Hz, Δν
AB=8.3 Hz, 2H), 1.44 (s, 9H), 1.38 (d, J=7.1 Hz, 3H).
Step 2. Synthesis of tert-butyl [(2S,3R)-4-chloro-3-hydroxybutan-2-yl]carbamate (C44).
[0167] A solution of C43 (16.0 g, 72.2 mmol) in diethyl ether (100 mL) was added to a mixture
of lithium tri-
tert-butoxyaluminum hydride (97%, 28.4 g, 108 mmol) in diethyl ether (500 mL). After 3
hours at room temperature, the reaction mixture was cooled to 0 °C, quenched with
aqueous hydrochloric acid (1 M, 150 mL), and extracted with
tert-butyl methyl ether. The combined organic layers were dried over sodium sulfate, filtered,
and concentrated
in vacuo to provide a thick oil, which was stirred with methylcyclohexane (45 mL). The resulting
solid was isolated via filtration and washed with methylcyclohexane to provide the
product (3.1 g). The filtrate was concentrated, mixed with pentane (25 mL), heated
to reflux, cooled with stirring and seeded with solid product. The resulting material
was filtered and rinsed with pentane to provide the product as a solid (8.1 g). Total
yield: 11.2 g, 50.1 mmol, 69%.
1H NMR (400 MHz, CDCl
3) δ 4.76 (br s, 1 H), 3.77-3.87 (m, 1 H), 3.69-3.76 (m, 1 H), 3.65 (dd, half of ABX
pattern,
J=11.3, 3.9 Hz, 1 H), 3.53 (dd, half of ABX pattern,
J=11.3, 8.0 Hz, 1 H), 2.95 (br s, 1 H), 1.45 (s, 9H), 1.27 (d,
J=6.8 Hz, 3H).
Alternative Step 2. Synthesis of tert-butyl [(2S,3R)-4-chloro-3-hydroxybutan-2-yl]carbamate (C44).
[0168] A 0.1 M potassium phosphate buffer, 2.0 mM in magnesium chloride, was prepared by
combining potassium dihydrogenphosphate (9.86 g, 72.4 mmol), potassium hydrogenphosphate
(22.2 g, 127 mmol) and magnesium chloride hexahydrate (0.812 g, 4.0 mmol) in water
(2 L); the pH of the resulting solution was 7.05. To this phosphate buffer (1.8 L)
was added nicotinamide adenine dinucleotide phosphate, disodium salt trihydrate (1.9
g, 2.4 mmol) and ketoreductase enzyme (Codexis, KRED-P1-E05) (8 g), and the mixture
was stirred for 45 minutes at 22 °C to dissolve the ketoreductase. A solution of
tert-butyl [(2
S)-4-chloro-3-oxobutan-2-yl]carbamate (
C43) (50.0 g, 226 mmol) in 2-propanol (200 mL) was added, and the resulting suspension
was stirred for 46 hours at 30 °C, under a nitrogen flow (10 mL/minute) from a sparge
inlet containing 2-propanol and water (1:1, 300 mL). At this point,
tert-butyl methyl ether (1 L) was added to the reaction mixture, which was swirled for
20 minutes. The resulting emulsion was filtered through diatomaceous earth (200 g),
and the filter cake was broken and washed with
tert-butyl methyl ether (3 x 400 mL). The combined organic layers from the filtrates were
dried with sodium sulfate (625 g), filtered, and concentrated
in vacuo to afford the crude product as a red oil (50 g). This material was mixed with ethyl
acetate (80 mL) and treated with decolorizing carbon (5 g) over 10 minutes with gentle
heating. After filtration through Celite, the solution was concentrated
in vacuo and mixed with warm hexanes (40 mL) under stirring. After 18 hours, the resulting
solid was collected via filtration and rinsed with pentane, providing the product
as a white powder (14.14 g). The mother liquor was concentrated under reduced pressure
to yield an oil (32 g), which was crystallized in the same way using warm hexanes
(30 mL) to obtain additional product as a white powder (13.65 g). Total yield: 27.79
g, 124 mmol, 55%.
1H NMR (400 MHz, CDCl
3) δ 4.77 (br s, 1H), 3.77-3.87 (m, 1H), 3.69-3.76 (m, 1H), 3.65 (dd, half of ABX pattern,
J=11.1, 3.9 Hz, 1 H), 3.53 (dd, half of ABX pattern, J=11.3, 8.0 Hz, 1 H), 3.00 (br
s, 1 H), 1.45 (s, 9H), 1.26 (d, J=6.8 Hz, 3H).
Step 3. Synthesis of (2R,3S)-3-[(tert-butoxycarbonyl)amino]-1-chlorobutan-2-yl 4-nitrobenzoate (C45).
[0169] A solution of
C44 (15 g, 67 mmol) in dichloromethane (400 mL) was cooled to 0 °C and treated with triethylamine
(11.7 mL, 83.9 mmol) and 4-(dimethylamino)pyridine (99%, 827 mg, 6.70 mmol). A solution
of 4-nitrobenzoyl chloride (15.6 g, 84.1 mmol) in dichloromethane (100 mL) was then
added, and the reaction mixture was allowed to slowly warm to room temperature over
18 hours. Dichloromethane (500 mL) was added, and the solution was washed with aqueous
hydrochloric acid (1 M, 250 mL), dried over sodium sulfate, filtered and concentrated
in vacuo. Purification via silica gel chromatography (Gradient: 0% to 3% ethyl acetate in dichloromethane)
afforded the product as a pale yellow solid. Yield: 23 g, 62 mmol, 92%.
1H NMR (400 MHz, CDCl
3) δ 8.24-8.34 (m, 4H), 5.28-5.33 (m, 1 H), 4.55 (br d,
J=9 Hz, 1 H), 4.19-4.30 (br m, 1 H), 3.71-3.87 (m, 2H), 1.38 (br s, 9H), 1.25 (d,
J=6.8 Hz, 3H).
Step 4. Synthesis of tert-butyl {(1S)-1-[(2R)-oxiran-2-yl]ethyl}carbamate (C46).
[0170] An aqueous solution of potassium hydroxide (23.9 g of 85% purity, 362 mmol, in 160
mL water) was added drop-wise to a 0 °C solution of
C45 (27 g, 72 mmol) in ethanol (1 L), and the reaction mixture was stirred for 1 hour
at 0 °C. At that point, it was diluted with water (1 L) and extracted with
tert-butyl methyl ether (2 x 500 mL). The combined organic layers were washed with aqueous
sodium hydroxide solution (1 M, 2 x 250 mL), dried over sodium sulfate, filtered,
and concentrated
in vacuo. Silica gel chromatography (Gradient: 5% to 30% ethyl acetate in heptane) provided
the product as a colorless oil. Yield: 11.9 g, 63.6 mmol, 88%.
1H NMR (400 MHz, CDCl
3) δ 4.41 (br s, 1 H), 3.93-4.06 (br m, 1 H), 2.99 (ddd,
J=3.9, 2.5, 2.5 Hz, 1 H), 2.74 (dd,
J=4.7, 4.0 Hz, 1 H), 2.61 (br dd,
J=4.7, 2.7 Hz, 1 H), 1.44 (s, 9H), 1.27 (d,
J=6.9 Hz, 3H). Step 5. Synthesis of
tert-butyl [(2
S,3
S)-3-hydroxy-6-(trimethylsilyl)hex-5-yn-2-yl]carbamate (
C47).
[0171] n-Butyllithium (2.5 M solution in hexanes, 39.7 mL, 99 mmol) was added drop-wise to
a -20 °C solution of ethynyl(trimethyl)silane (15 mL, 110 mmol) in toluene (100 mL),
at a rate that kept the reaction temperature below -15 °C. The reaction mixture was
stirred for 15 minutes at this temperature. Dimethylaluminum chloride (97%, 1.0 M
solution in hexanes, 96 mL, 96 mmol) was added, and the reaction flask was immersed
in an ice bath for 1 hour, then warmed to room temperature for 30 minutes. After cooling
the reaction mixture to 0 °C, a solution of
C46 (6.2 g, 33 mmol) in toluene (50 mL) was added, and stirring was continued at 0 °C
for 1 hour, at which time the reaction mixture was warmed to room temperature for
1 hour and subsequently cooled to 0 °C. A mixture of saturated aqueous citric acid
(100 mL) and water (100 mL) was added, and the ice bath was removed.
tert-Butyl methyl ether (500 mL) was added, and the mixture was stirred for 15 minutes;
the organic layer was then washed with water (100 mL), dried over sodium sulfate,
filtered, and concentrated
in vacuo, providing the product as a thick oil. Yield: 7.2 g, 25 mmol, 76%.
1H NMR (400 MHz, CDCl
3) δ 4.79 (br s, 1 H), 3.64-3.74 (m, 2H), 2.48 (dd, half of ABX pattern,
J=16.9, 7.4 Hz, 1 H), 2.43 (dd, half of ABX pattern,
J=16.9, 5.3 Hz, 1 H), 2.36 (br s, 1 H), 1.45 (s, 9H), 1.24 (d,
J=6.6 Hz, 3H), 0.17 (s, 9H).
Step 6. Synthesis of tert-butyl [(2S,3S)-3-hydroxyhex-5-yn-2-yl]carbamate (C48).
[0172] Potassium carbonate (6.97 g, 50.4 mmol) was added to a solution of
C47 (7.2 g, 25 mmol) in methanol (50 mL). After stirring at room temperature for 1.5
hours, the reaction mixture was partitioned between water (50 mL) and
tert-butyl methyl ether (400 mL). The aqueous layer was extracted with
tert-butyl methyl ether (100 mL); the combined organic layers were dried over sodium sulfate,
filtered, and concentrated
in vacuo to give the product as a thick oil. Yield: 5.0 g, 23 mmol, 92%.
1H NMR (400 MHz, CDCl
3) δ 4.76 (br s, 1 H), 3.67-3.80 (m, 2H), 2.74 (br s, 1 H), 2.41-2.44 (m, 2H), 2.06
(dd,
J=2.7, 2.6 Hz, 1 H), 1.45 (s, 9H), 1.23 (d,
J=6.8 Hz, 3H).
Step 7. Synthesis of tert-butyl {(2S,3S)-6-[4-chloro-2-(trifluoromethyl)phenyl]-3-hydroxyhex-5-yn-2-yl}carbamate (C49).
[0173] Compound
C48 was reacted with 4-chloro-1-iodo-2-(trifluoromethyl)benzene using the general method
described for synthesis of
C39 in Example 8, except that
tert-butyl methyl ether was used in place of diethyl ether, and no recrystallization was
carried out in this case. The product was obtained as a thick oil. Yield: 19.2 g,
49.0 mmol, 100%.
1H NMR (400 MHz, CDCl
3) δ 7.63 (br d,
J=2.0 Hz, 1 H), 7.44-7.52 (m, 2H), 4.80 (br s, 1 H), 3.73-3.84 (m, 2H), 2.63-2.75 (m,
2H), 1.45 (s, 9H), 1.27 (br d,
J=6.6 Hz, 3H).
Step 8. Synthesis of tert-butyl [(1S)-1-{(2S)-5-[4-chloro-2-(trifluoromethyl)phenyl]-5-methoxytetrahydrofuran-2-yl}ethyl]carbamate
(C50).
[0174] p-Toluenesulfonic acid monohydrate (96%, 1.55 g, 7.82 mmol) and di-µ-chlorodichlorobis(ethylene)diplatinum(II)
(97%, 545 mg, 0.900 mmol) were added to a solution of
C49 (33 g, 84 mmol) and trimethyl orthoformate (40 mL, 360 mmol) in methanol (400 mL),
and the reaction mixture was stirred at room temperature for 3 hours. Additional di-µ-chlorodichlorobis(ethylene)diplatinum(II)
(97%, 500 mg, 0.82 mmol) was introduced, and stirring was continued for 3 hours. The
reaction mixture was poured into saturated aqueous sodium bicarbonate solution (400
mL) and extracted with
tert-butyl methyl ether; the combined organic layers were dried over magnesium sulfate,
filtered, and concentrated
in vacuo to afford the product as a thick oil, which was taken directly to the following reaction.
Step 9. Synthesis of tert-butyl [(1S)-1-{(2S,5R)-5-[4-chloro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]carbamate (C51).
[0175] Compound
C50 from the previous step was converted to the product using the general method for
synthesis of
C26 in Example 6. In this case, the quenched reaction was extracted with dichloromethane;
the combined organic layers were dried over magnesium sulfate, filtered and concentrated
in vacuo. Silica gel chromatography (Gradient: 0% to 10% ethyl acetate in heptane) afforded
a solid (41.8 g), which was dissolved in methanol (50 mL) and treated with water (∼7
mL) until the solution became cloudy. After stirring for 2 hours, the mixture was
filtered, and the isolated solid was rinsed with a 3:7 mixture of methanol and water,
providing the product as a solid (6.9 g). The filtrate was concentrated until a precipitate
formed; this was isolated via filtration to provide 15 g of a solid, which was treated
in the same way to provide additional product as a solid (9.5 g). Total yield over
2 steps: 16.4 g, 41.6 mmol, 50%.
1H NMR (400 MHz, CDCl
3) δ 7.77 (br d,
J=8.4 Hz, 1 H), 7.61 (br d,
J=2.2 Hz, 1 H), 7.53 (br dd,
J=8.6, 2.2 Hz, 1H), 5.13 (br dd,
J=8, 7 Hz, 1H), 4.67 (br s, 1H), 3.84-3.94 (m, 2H), 2.32-2.42 (m, 1H), 2.01-2.11 (m,
1H), 1.78-1.89 (m, 1H), 1.58-1.68 (m, 1H), 1.47 (s, 9H), 1.26 (d, J=6.5 Hz, 3H).
Step 10. Synthesis of (1S)-1-{(2S,5R)-5-[4-chloro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethanamine (C52).
[0176] Trifluoroacetic acid (25 mL, 340 mmol) was added to a solution of
C51 (16.4 g, 41.6 mmol) in dichloromethane (250 mL). The reaction mixture was stirred
at room temperature for 18 hours, then poured into aqueous sodium hydroxide solution
(1 M, 350 mL). Additional dichloromethane (500 mL) was added, and the aqueous layer
was extracted with dichloromethane (2 x 200 mL). The combined organic layers were
dried over sodium sulfate, filtered, and concentrated
in vacuo to provide the product as a brown oil. Yield: 12 g, 41 mmol, 98%.
1H NMR (400 MHz, CDCl
3) δ 7.73 (brd,
J=8.4 Hz, 1H), 7.60 (brd,
J=2.2 Hz, 1H), 7.50-7.54 (m, 1H), 5.17-5.23 (m, 1H), 3.67-3.74 (m, 1H), 3.01-3.09 (m,
1 H), 2.35-2.46 (m, 1 H), 1.98-2.09 (m, 1 H), 1.59-1.74 (m, 2H), 1.14 (d,
J=6.5 Hz, 3H).
Step 11. Synthesis of N-[(1S)-1-{(2S,5R)-5-[4-chloro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-1-(2-hydroxyethyl)-5-(4-methyl-1H-imidazol-1-yl)-6-oxo-1,6-dihydropyridine-2-carboxamide (C53).
[0177] Compound
C52 was converted to the product using the general method employed for synthesis of
C42 in Example 8, except that
C53 was not stirred with diethyl ether. The product was obtained as an off-white solid.
Yield: 21 g, 39 mmol, 95%. LCMS
m/
z 539.3 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.12 (br d,
J=9 Hz, 1 H), 8.00-8.02 (m, 1 H), 7.89 (br d,
J=8.5 Hz, 1 H), 7.62 (d,
J=2.2 Hz, 1 H), 7.56 (br dd,
J=8.5, 2 Hz, 1 H), 7.22 (d,
J=7.5 Hz, 1 H), 7.00-7.02 (m, 1 H), 6.39 (d,
J=7.6 Hz, 1 H), 5.22 (br dd,
J=8, 7 Hz, 1 H), 4.36-4.46 (m, 1 H), 4.27-4.31 (m, 2H), 3.93-4.07 (m, 2H), 3.72-3.78
(m, 1 H), 2.40-2.49 (m, 1 H), 2.16-2.26 (m, 1 H), 2.14 (d,
J=0.9 Hz, 3H), 1.7-1.9 (m, 2H), 1.36 (d,
J=6.7 Hz, 3H).
[0178] Step 12. Synthesis of 2-[(1
S)-1-{(2
S,5
R)-5-[4-chloro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1
H-imidazol-1-yl)-3,4-dihydro-2
H-pyrido[1,2-a]pyrazine-1,6-dione
(9). Compound
C53 was converted to the product using the general method described for synthesis of
8 in Example 8, except for the purification. In this case, after silica gel chromatography
(Gradient: 0% to 5% methanol in dichloromethane), material from the chromatography
was recrystallized from ethyl acetate to provide the product. The filtrate from the
recrystallization was concentrated, triturated with diethyl ether, and recrystallized
from ethyl acetate to provide additional product. These two lots were combined (25
g), slurried in
tert-butyl methyl ether (50 mL) and warmed to 50 °C for 15 minutes. Cooling and isolation
via filtration afforded the product as an off-white solid. Yield: 24.7 g, 47.4 mmol,
72%. LCMS
m/
z 521.3 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.30 (br s, 1 H), 7.70 (br d,
J=8.4 Hz, 1 H), 7.57 (br d,
J=2.2 Hz, 1 H), 7.52 (dd,
J=8.3, 2.1 Hz, 1 H), 7.48 (d,
J=7.8 Hz, 1 H), 7.30 (d,
J=7.8 Hz, 1H), 7.12-7.14 (m, 1H), 5.14-5.20 (m, 1H), 4.93 (dq,
J=9.4, 6.8 Hz, 1 H), 4.43 (ddd, half of ABXY pattern,
J=14.1, 7.0, 3.9 Hz, 1 H), 4.26 (ddd, half of ABXY pattern,
J=14.1, 8.0, 4.1 Hz, 1 H), 4.06 (ddd,
J=9.3, 7.1, 6.6 Hz, 1 H), 3.74 (ddd, half of ABXY pattern, J=13.4, 8.0, 4.0 Hz, 1 H),
3.66 (ddd, half of ABX pattern, J=13.4, 7.1, 4.1 Hz, 1 H), 2.38-2.48 (m, 1 H), 2.31
(d, J=1.0 Hz, 3H), 2.17-2.27 (m, 1 H), 1.70-1.88 (m, 2H), 1.31 (d, J=6.8 Hz, 3H).
Example 10
2-[(1S)-1-{(2S,5R)-5-[3,5-Difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (10)
[0179]

Step 1. Synthesis of (2S,3S)-2-(dibenzylamino)-6-[3,5-difluoro-4-(trifluoromethyl)phenyl]hex-5-yn-3-ol (C54).
[0180] Compound
C38 was converted to the product via reaction with 5-bromo-1,3-difluoro-2-(trifluoromethyl)benzene,
using the method described for synthesis of C49 in Example 9. The product was obtained
as a solid. Yield: 3.10 g, 6.55 mmol, 96%. LCMS
m/
z 474.2 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 7.22-7.35 (m, 10H), 6.74 (d,
J=10.2 Hz, 2H), 4.56 (s, 1 H), 3.86 (d,
J=13.3 Hz, 2H), 3.68-3.76 (m, 1 H), 3.34 (d,
J=13.3 Hz, 2H), 2.85-2.96 (m, 1 H), 2.79 (dd,
J=17.4, 3.7 Hz, 1 H), 2.47 (dd,
J=17.4, 4.3 Hz, 1 H), 1.11 (d,
J=6.6 Hz, 3H).
Step 2. Synthesis of (1S)-N,N-dibenzyl-1-{(2S)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]-2,3-dihydrofuran-2-yl}ethanamine (C55).
[0181] Compound
C54 was converted to the product using the general method described for synthesis of
C40 in Example 8. In this case, the reaction was quenched with saturated aqueous sodium
bicarbonate solution rather than aqueous sodium hydroxide solution. The product was
isolated as a thick oil. Yield: 1.96 g, 4.14 mmol, 78%. LCMS
m/
z 474.2 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 7.38 (br d, half of AB quartet,
J=7.4 Hz, 4H), 7.25-7.30 (m, 4H), 7.15-7.23 (m, 4H), 5.50-5.53 (m, 1 H), 4.78 (ddd,
J=9.8, 9.8, 7.0 Hz, 1 H), 3.91 (d,
J=14.0 Hz, 2H), 3.58 (d,
J=13.7 Hz, 2H), 2.92-3.01 (m, 1 H), 2.68-2.83 (m, 2H), 1.19 (d,
J=7.0 Hz, 3H).
Step 3. Synthesis of (1S)-1-{(2S,5R)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethanamine (C56).
[0182] The product was prepared from
C55 according to the general procedure for the synthesis of
C41 in Example 8, except that
tert-butyl methyl ether was used in the work-up rather than ethyl acetate. The product
was obtained as an oil. Yield: 629 mg, 2.10 mmol, 90%.
1H NMR (400 MHz, CDCl
3) δ 7.00 (d,
J=10.2 Hz, 2H), 4.91 (dd,
J=7.2, 6.8 Hz, 1 H), 3.70-3.77 (m, 1 H), 2.93-3.01 (m, 1 H), 2.34-2.44 (m, 1 H), 1.99-2.09
(m, 1 H), 1.73-1.87 (m, 3H), 1.61-1.71 (m, 1 H), 1.11 (d,
J=6.6 Hz, 3H).
Step 4. Synthesis of N-[(1S)-1-{(2S,5R)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-1-(2-hydroxyethyl)-5-(4-methyl-1H-imidazol-1-yl)-6-oxo-1,6-dihydropyridine-2-carboxamide (C57).
[0183] Conversion of
C56 to the product employed the general method described for synthesis of
C42 in Example 8. In this case, the cooled reaction mixture was quenched with aqueous
sodium hydroxide solution (1 M, 25 mL), then extracted three times with ethyl acetate.
The combined organic layers were dried over sodium sulfate, filtered, and concentrated
in vacuo. The residue was triturated with
tert-butyl methyl ether to afford the product as a white solid. Yield: 730 mg, 1.35 mmol,
65%.
1H NMR (400 MHz, CDCl
3) δ 8.61 (br d,
J=9 Hz, 1 H), 7.96 (br s, 1 H), 7.17 (d,
J=7.6 Hz, 1 H), 7.11 (br d,
J=10.3 Hz, 2H), 6.98-7.00 (m, 1 H), 6.41 (d,
J=7.4 Hz, 1 H), 4.95 (dd,
J=7.2, 6.6 Hz, 1 H), 4.30-4.46 (m, 3H), 4.07-4.18 (m, 2H), 3.94-4.02 (m, 1 H), 2.41-2.50
(m, 1 H), 2.12-2.22 (m, 1 H), 2.08 (br s, 3H), 1.74-1.93 (m, 2H), 1.35 (d,
J=6.6 Hz, 3H).
Step 5. Synthesis of 1-(2-chloroethyl)-N-[(1S)-1-{(2S,5R)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-5-(4-methyl-1H-imidazol-1-yl)-6-oxo-1,6-dihydropyridine-2-carboxamide (C58).
[0184] Thionyl chloride (1.0 mL, 14 mmol) was added to a 0 °C mixture of
C57 (1.00 g, 1.85 mmol) in dichloromethane (20 mL). The ice bath was removed, and the
reaction mixture was stirred at room temperature for 2 hours, then cooled to 0 °C
and quenched with saturated aqueous sodium bicarbonate solution. The aqueous layer
was extracted with ethyl acetate, and the combined organic layers were dried over
sodium sulfate, filtered, and concentrated
in vacuo to provide the product as a sticky yellow foam, which was taken directly to the following
step. Yield: 1.00 g, 1.79 mmol, 97%. LCMS
m/
z 559.1 [M+H
+].
Step 6. Synthesis of 2-[(1S)-1-{(2S,5R)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (10).
[0185] Lithium bis(trimethylsilyl)amide (1 M solution in THF, 2.24 mL, 2.24 mmol) was added
drop-wise to a 0 °C solution of
C58 (from the preceding step, 1.00 g, 1.79 mmol) in tetrahydrofuran (20 mL), and the
reaction mixture was stirred at 0 °C for 15 minutes. The ice bath was removed, and
stirring was continued for 1 hour. After cooling to 0 °C, the reaction was quenched
with saturated aqueous ammonium chloride solution and extracted with ethyl acetate.
The combined organic layers were dried over sodium sulfate, filtered, and concentrated
in vacuo. Silica gel chromatography (Gradient: 0% to 20% methanol in ethyl acetate) provided
a pale yellow foam (709 mg), which was recrystallized from
tert-butyl methyl ether to afford the product as a white solid. Yield (two crops): 404
mg, 0.773 mmol, 43%. LCMS
m/
z 523.3 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.30 (br s, 1 H), 7.49 (d,
J=7.8 Hz, 1 H), 7.34 (d,
J=7.8 Hz, 1 H), 7.13-7.15 (m, 1 H), 6.98 (br d,
J=10.3 Hz, 2H), 4.81-4.89 (m, 2H), 4.51 (ddd,
J=14.2, 6.2, 4.1 Hz, 1 H), 4.21 (ddd,
J=14.2, 8.2, 4.1 Hz, 1 H), 4.07-4.14 (m, 1 H), 3.63-3.77 (m, 2H), 2.38-2.47 (m, 1 H),
2.31 (s, 3H), 2.17-2.26 (m, 1 H), 1.76-1.92 (m, 2H), 1.31 (d,
J=6.8 Hz, 3H).
Examples 11 and 12
7-(4-Methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (11) and 7-4-Methyl-1H-imidazol-1-yl)-2-({(2R,5S)-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (12)
[0186]

Step 1. Synthesis of 2-[4-(trifluoromethyl)phenyl]hex-5-en-2-ol (C59).
[0187] A solution of hex-5-en-2-one (1.00 g, 10.2 mmol) in tetrahydrofuran (3 mL) was added
to [4-(trifluoromethyl)phenyl]magnesium bromide (0.26 M solution in tetrahydrofuran,
50 mL, 13 mmol) at 0 °C. After 15 minutes at 0 °C, the reaction mixture was heated
at 70 °C for 18 hours, then cooled to room temperature, diluted with ethyl acetate,
and washed with saturated aqueous ammonium chloride solution, with water, and with
saturated aqueous sodium chloride solution. The organic layer was dried over magnesium
sulfate, filtered, and concentrated
in vacuo. Purification via silica gel chromatography (Gradient: 10% to 30% ethyl acetate in
heptane) afforded the product as a dark gold oil. Yield: 1.86 g, 7.61 mmol, 75%.
1H NMR of crude product (400 MHz, CDCl
3), characteristic peaks: δ 7.59 (br AB quartet,
JAB=8 Hz, Δν
AB=19 Hz, 4H), 5.74-5.85 (m, 1 H), 4.93-5.01 (m, 2H), 1.59 (s, 3H).
Step 2. Synthesis of {5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methanol
(C60).
[0188] 3-Chloroperoxybenzoic acid (70%, 3.73 g, 15.1 mmol) was added to a solution of
C59 (1.85 g, 7.57 mmol) in dichloromethane (50 mL). After 3 hours, the reaction mixture
was washed with 10% aqueous sodium sulfite solution, with saturated aqueous sodium
bicarbonate solution, and with water. The organic layer was dried over magnesium sulfate,
filtered, and concentrated
in vacuo. By
1H NMR, this crude product contained a minor amount of the intermediate epoxide [characteristic
epoxide peaks at 400 MHz, in CDCl
3: 2.87-2.92 (m, 1 H), 2.75 (dd,
J=4.7, 4.1 Hz, 1 H), 2.45 (dd,
J=4.9, 2.7 Hz, 1 H)]. The crude product was therefore dissolved in dichloromethane
(30 mL), treated with p-toluenesulfonic acid monohydrate (142 mg, 0.746 mmol) and
allowed to stir at room temperature for 18 hours. The reaction mixture was then washed
with saturated aqueous sodium bicarbonate solution and with water, dried over magnesium
sulfate, filtered, and concentrated under reduced pressure. Purification via silica
gel chromatography (Gradient: 20% to 40% ethyl acetate in heptane) provided the product
as a yellow oil, which by
1H NMR analysis consisted of a roughly 1:1 mixture of diastereomers. Yield: 1.65 g,
6.34 mmol, 84%.
1H NMR (400 MHz, CDCl
3), characteristic peaks: δ 7.49-7.61 (m, 4H), [4.29-4.37 (m) and 4.13-4.20 (m), total
1 H], [3.78 (br dd,
J=11.6, 2.4 Hz) and 3.71 (br dd,
J=11.4, 2.8 Hz), total 1 H], 3.54-3.64 (m, 1 H), 2.03-2.28 (m, 3H), 1.55 and 1.53 (2
s, total 3H).
Step 3. Synthesis of {cis-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl 4-methylbenzenesulfonate
(C61).
[0189] 4-Methylbenzenesulfonyl chloride (98%, 1.60 g, 8.22 mmol) was added to a solution
of
C60 (1.65 g, 6.34 mmol) and triethylamine (1.32 mL, 9.47 mmol) in dichloromethane (25
mL) at 0 °C, and the reaction mixture was allowed to slowly warm to room temperature
as the ice bath melted. After 18 hours, the solution was washed with saturated aqueous
sodium bicarbonate solution and with water. The organic layer was concentrated
in vacuo and purified via silica gel chromatography (Gradient: 10% to 40% ethyl acetate in
heptane). The product, which was the more polar isomer, was obtained as a white solid.
Yield: 830 mg, 2.00 mmol, 32%.
1H NMR (400 MHz, CDCl
3) δ 7.79 (br d,
J=8.4 Hz, 2H), 7.44 (br AB quartet,
JAB=8.2 Hz, Δν
AB=31.0 Hz, 4H), 7.34 (br d,
J=8 Hz, 2H), 4.37-4.44 (m, 1 H), 4.05 (dd, half of ABX pattern,
J=10.1, 4.4 Hz, 1 H), 4.00 (dd, half of ABX pattern,
J=10.1, 5.8 Hz, 1 H), 2.47 (s, 3H), 2.08-2.22 (m, 3H), 1.62-1.71 (m, 1 H), 1.48 (s,
3H). Also obtained was the less polar isomer {
trans-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl 4-methylbenzenesulfonate
(C62), as a thick, colorless gum (878 mg).
1H NMR (400 MHz, CDCl
3) δ 7.84 (br d,
J=8.4 Hz, 2H), 7.56 (br d,
J=8.5 Hz, 2H), 7.44 (br d,
J=8.5 Hz, 2H), 7.35-7.39 (m, 2H), 4.19-4.26 (m, 1 H), 4.06-4.14 (m, 2H), 2.46 (s, 3H),
2.16-2.24 (m, 1 H), 2.04-2.12 (m, 1 H), 1.82-1.89 (m, 2H), 1.47 (s, 3H). The indicated
relative stereochemistries of
C61 and
C62 were assigned based on NOE studies.
Step 4. Synthesis of 2-[({cis-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)amino]ethanol (C63).
[0190] A mixture of 2-aminoethanol (856 mg, 14.0 mmol) and
C61 (830 mg, 2.00 mmol) in acetonitrile (10 mL) was heated at 90 °C for 18 hours, then
cooled to room temperature, diluted with ethyl acetate, and washed with water and
with saturated aqueous sodium chloride solution. The organic layer was dried over
magnesium sulfate, filtered, and concentrated
in vacuo to provide the product as a light yellow oil. Yield: 559 mg, 1.84 mmol, 92%. LCMS
m/
z 304.1 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 7.56 (br AB quartet,
JAB=8.4 Hz, Δν
AB=15.9 Hz, 4H), 4.29-4.37 (m, 1 H), 3.65 (t, J=5.3 Hz, 2H), 2.79-2.91 (m, 2H), 2.74
(d, J=5.9 Hz, 2H), 2.06-2.25 (m, 3H), 1.54-1.64 (m, 1 H), 1.52 (s, 3H).
Step 5. Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (11) and 7-(4-methyl-1H-imidazol-1-yl)-2-({(2R,5S)-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (12).
[0191] Compound
C63 was converted to the products using the general method described for synthesis of
6 in Example 6. In this case, silica gel chromatography was carried out using a gradient
of 0% to 20% methanol in ethyl acetate. The racemic product was separated into its
enantiomers via supercritical fluid chromatography (Column: Chiralcel OJ-H, 5 μm;
Eluent: 4:1 carbon dioxide / methanol containing 0.2% isopropylamine). The first-eluting
peak was Example 11, obtained as a solid. Yield: 47 mg, 97 µmol, 5%. LCMS
m/
z 487.2 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.23 (d,
J=1.4 Hz, 1H), 7.57 (br AB quartet,
JAB=8.2 Hz, Δν
AB=36.4 Hz, 4H), 7.46 (d,
J=7.6 Hz, 1 H), 7.28 (d,
J=7.6 Hz, 1 H, assumed; partially obscured by solvent peak), 7.14-7.15 (m, 1 H), 4.39-4.51
(m, 2H), 4.28 (ddd, half of ABXY pattern,
J=14.3, 8.0, 4.1 Hz, 1H), 4.10 (dd,
J=13.9, 3.1 Hz, 1H), 4.01 (ddd,
J=13.5, 8.0, 4.1 Hz, 1H), 3.80 (ddd,
J=13.5, 7.2, 4.1 Hz, 1H), 3.34 (dd,
J=14.0, 8.1 Hz, 1H), 2.30 (d,
J=1.0 Hz, 3H), 2.17-2.25 (m, 3H), 1.63-1.73 (m, 1H), 1.50 (s, 3H). The second-eluting
peak was Example
12, obtained as a solid. Yield: 39 mg, 80 µmol, 4%. LCMS
m/
z 487.2 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.22 (d,
J=1.2 Hz, 1 H), 7.59-7.63 (m, 2H), 7.50-7.54 (m, 2H), 7.46 (d,
J=7.6 Hz, 1 H), 7.28 (d, J=7 Hz, 1 H, assumed; partially obscured by solvent peak),
7.13-7.15 (m, 1 H), 4.39-4.50 (m, 2H), 4.28 (ddd, half of ABXY pattern,
J=14.2, 7.9, 4.0 Hz, 1 H), 4.10 (dd,
J=13.9, 3.1 Hz, 1 H), 4.01 (ddd,
J=13.5, 7.9, 4.0 Hz, 1 H), 3.80 (ddd,
J=13.5, 7.2, 4.1 Hz, 1 H), 3.33 (dd,
J=14.0, 8.1 Hz, 1 H), 2.29 (d,
J=1.0 Hz, 3H), 2.17-2.25 (m, 3H), 1.63-1.73 (m, 1 H), 1.50 (s, 3H). The absolute stereochemistries
of these compounds were assigned on the basis of the difference in their IC
50 values (see Table 1); compounds with the (2S,5R) configuration around the tetrahydrofuran
ring are generally more potent than their (2R,5S) enantiomers.
Examples 13 and 14
7-(4-Methyl-1H-imidazol-1-yl)-2-({cis-2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt (13) and 7-(4-Methyl-1H-imidazol-1-yl)-2-({trans-2-methl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt (14)
[0192]

Step 1. Synthesis of methyl 5-[4-(trifluoromethyl)phenyl]furan-2-carboxylate (C64).
[0193] Methyl 5-bromofuran-2-carboxylate (497 mg, 2.42 mmol) and 4-(trifluoromethyl)phenyl]boronic
acid (472 mg, 2.48 mmol) were combined in 1,4-dioxane (5 mL). Saturated aqueous sodium
bicarbonate solution (5.0 mL) was added, followed by tetrakis(triphenylphosphine)palladium(0)
(140 mg, 0.121 mmol), and the reaction mixture was heated in a microwave reactor at
150 °C for 20 minutes. After dilution with dichloromethane (20 mL) and water (20 mL),
the layers were separated and the aqueous layer was extracted with dichloromethane
(10 mL). The combined organic layers were dried over magnesium sulfate, filtered,
and concentrated
in vacuo. Purification via silica gel chromatography (Gradient: 0% to 50% ethyl acetate in
heptane) afforded the product as a pale off-white solid. Yield: 298 mg, 1.10 mmol,
45%. LCMS
m/
z 271.0 [M+H
+].
1H NMR (500 MHz, CDCl
3) δ 7.90 (br d,
J=8.3 Hz, 2H), 7.68 (br d,
J=8.4 Hz, 2H), 7.28 (d,
J=3.7 Hz, 1 H), 6.86 (d,
J=3.7 Hz, 1 H), 3.94 (s, 3H). Step 2. Synthesis of methyl 5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-carboxylate
(C65).
[0194] Palladium hydroxide on carbon (∼50% water, 10 wt% palladium, 650 mg, 0.46 mmol) was
added to a solution of
C64 (6.5 g, 32 mmol) in ethanol (170 mL), and the reaction mixture was hydrogenated for
3 hours at room temperature. The catalyst was removed via filtration; the filtrate
was concentrated
in vacuo and purified via supercritical fluid chromatography (Column: Chiralpak AD-H, 5 µm;
Eluent: 9:1 carbon dioxide / methanol), providing the product as an oil. Starting
material
C64 was also recovered (2 g). Yield: 3.0 g, 11 mmol, 34% (44% based on recovered starting
material).
1H NMR (400 MHz, CDCl
3) δ 7.63 (br AB quartet,
JAB=8.5 Hz, Δν
AB=15 Hz, 4H), 5.09 (dd,
J=8.9, 5.8 Hz, 1 H), 4.65-4.69 (m, 1 H), 3.81 (s, 3H), 2.33-2.45 (m, 2H), 2.18-2.27
(m, 1 H), 1.84-1.95 (m, 1 H).
Step 3. Synthesis of methyl 2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-carboxylate
(C66).
[0195] A -100 °C solution of potassium bis(trimethylsilyl)amide (1 M in tetrahydrofuran,
9.1 mL, 9.1 mmol) was added to a solution of
C65 (1.25 g, 4.56 mmol) and iodomethane (98%, 2.90 mL, 45.6 mmol) in diethyl ether (5
mL) at -100 °C, and the reaction mixture was allowed to gradually warm to room temperature.
Upon reaction completion, aqueous citric acid solution (1 M, 5 mL) was added. The
aqueous layer was extracted with diethyl ether (2 x 10 mL), and the combined organic
layers were washed with saturated aqueous sodium chloride solution, dried over magnesium
sulfate, filtered, and concentrated
in vacuo. Silica gel chromatography (Eluent: 4:1 heptane / ethyl acetate) provided the product.
By
1H NMR, this material appeared to be a roughly 1:1 mixture, presumed to consist of
the
cis and
trans isomers of the product. Yield: 560 mg, 1.94 mmol, 42%.
1H NMR (400 MHz, CDCl
3) δ {7.60 (s) and [7.60 (br d, J=8 Hz) and 7.45-7.49 (m)], total 4H}, [5.20 (dd,
J=7.0, 7.0 Hz) and 5.14 (dd,
J=9.4, 5.8 Hz), total 1 H], 3.80 and 3.79 (2 s, total 3H), 2.34-2.58 (m, 2H), 1.82-2.07
(m, 2H), 1.65 and 1.60 (2 s, total 3H).
Step 4. Synthesis of {2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methanol
(C67).
[0196] Lithium aluminum hydride (2 M solution in tetrahydrofuran, 0.26 mL, 0.52 mmol) was
added to a solution of
C66 (125 mg, 0.434 mmol) in diethyl ether (2 mL), and the reaction mixture was stirred
at room temperature for 1 hour. After acidification with aqueous hydrochloric acid,
the mixture was extracted with ethyl acetate, and the combined organic layers were
dried over magnesium sulfate, filtered, and concentrated
in vacuo to afford the product as an oil, presumed to be a ∼1:1 mixture of stereoisomers.
Yield: 85 mg, 0.33 mmol, 76%.
1H NMR (400 MHz, CDCl
3) δ 7.59 (br d,
J=8.2 Hz, 2H), 7.43-7.49 (m, 2H), 4.97-5.08 (m, 1 H), 3.51-3.63 (m, 2H), 2.32-2.44
(m, 1 H), 2.08-2.19 (m, 1 H), 1.76-1.95 (m, 2H), 1.34 and 1.33 (2 s, total 3H). Step
5. Synthesis of {2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl
methanesulfonate
(C68).
[0197] Compound
C67 was converted to the product using the general method described for synthesis of
C17 in Example 3. The product, isolated as a roughly 1:1 mixture of stereoisomers, was
used without additional purification.
1H NMR (400 MHz, CDCl
3), characteristic peaks: δ 7.60 (br d, J=8.6 Hz, 2H), 7.44-7.50 (m, 2H), 5.04-5.10
(m, 1 H), [4.21 (AB quartet,
JAB=10.4 Hz, Δν
AB=17.5 Hz) and 4.19 (s), total 2H], 3.08 and 3.03 (2 s, total 3H), 1.44 and 1.41 (2
s, total 3H).
Step 6. Synthesis of 2-[({2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)amino]ethanol
(C69).
[0198] The product was prepared from
C68 using the general method described for synthesis of
C9 in Example 1. In this case, the product was used in the next step without HPLC purification.
Yield: 295 mg, 0.973 mmol, 94%.
Step 7. Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-({cis-2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt (13) and 7-(4-methyl-1H-imidazol-1-yl)-2-({trans-2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt (14).
[0199] Compound
C69 was reacted with
P2 according to the method described for synthesis of
1 in Example 1. In this case, the crude reaction mixture was simply concentrated
in vacuo and the isomers were separated via HPLC (Column: Phenomenex Luna C-18(2), 5 µm; Mobile
phase A: 0.1 % formic acid in water; Mobile phase B: 0.1% formic acid in methanol;
Gradient: 5% to 95% B). Example
13 was the first-eluting isomer, isolated as a glass. Yield: 38 mg, 71 µmol, 7%. LCMS
m/
z 487.3 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.39 (s, 1 H), 8.23 (br s, 1 H), 7.62 (br d,
J=8 Hz, 2H), 7.51 (d,
J=7.8 Hz, 1 H), 7.43 (br d,
J=8 Hz, 2H), 7.29 (d,
J=7.7 Hz, 1 H), 7.14-7.18 (m, 1H), 5.07 (dd,
J=7.6, 7.2 Hz, 1 H), 4.20-4.35 (m, 2H), 4.11 (d,
J=14.0 Hz, 1H), 3.97-4.05 (m, 1H), 3.78-3.86 (m, 1 H), 3.50 (d,
J=14.0 Hz, 1H), 2.44-2.53 (m, 1H), 2.30 (s, 3H), 2.04-2.13 (m, 1 H), 1.92-2.01 (m,
1H), 1.80-1.91 (m, 1 H), 1.36 (s, 3H). The second-eluting isomer was Example
14, obtained as a glass. Yield: 26 mg, 49 µmol, 5%. LCMS
m/
z 487.3 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.46 (s, 1 H), 8.23 (br s, 1 H), 7.61 (br d,
J=8 Hz, 2H), 7.55 (d
J=7.6 Hz, 1 H), 7.44 (br d,
J=8 Hz, 2H), 7.32 (d,
J=7.8 Hz, 1 H), 7.16-7.20 (m, 1 H), 5.02 (dd,
J=9.4, 5.8 Hz, 1 H), 4.28-4.43 (m, 2H), 4.03 (ddd, half of ABXY pattern,
J=13.7, 7.3, 4.2 Hz, 1 H), 3.94 (d,
J=14.2 Hz, 1 H), 3.85-3.93 (m, 1 H), 3.62 (d,
J=14.1 Hz, 1 H), 2.35-2.44 (m, 1 H), 2.32 (s, 3H), 1.85-2.10 (m, 3H), 1.38 (s, 3H).
The indicated stereochemistries were assigned on the basis of NOE studies carried
out on both isomers.
Examples 15 and 16
7-(4-Methyl-1H-imidazol-1-yl)-2-({trans-6-[4-(trifluoromethyl)phenyl]tetrahydro-2H-pyran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt (15) and 7-(4-Methyl-1H-imidazol-1-yl)-2-([{cis-6-[4-(trifluoromethyl)phenyl]tetrahydro-2H-pyran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt (16)
[0200]

Step 1. Synthesis of 1-[4-(trifluoromethyl)phenyl]hex-5-en-1-ol (C70).
[0201] A mixture of 5-bromopent-1-ene (6.0 g, 40 mmol) and magnesium (1.44 g, 59.2 mmol)
in tetrahydrofuran (40 mL) was stirred at 0 °C for 30 minutes. 4-(Trifluoromethyl)benzaldehyde
(4.6 g, 26 mmol) was added drop-wise, and the reaction mixture was stirred at room
temperature for 4 hours, then quenched by addition of water (30 mL). After extraction
with ethyl acetate (3 x 15 mL), the combined organic layers were washed with saturated
aqueous sodium chloride solution (10 mL), dried over sodium sulfate, filtered, and
concentrated
in vacuo to afford the product as a yellow oil. This was used without additional purification.
Yield: 2.6 g, 11 mmol, 42%.
1H NMR (400 MHz, CDCl
3) δ 7.58-7.64 (m, 2H), 7.44-7.50 (m, 2H), 5.72-5.84 (m, 1 H), 4.93-5.04 (m, 2H), 4.73-4.79
(m, 1 H), 2.05-2.13 (m, 2H), 1.64-1.85 (m, 2H), 1.47-1.60 (m, 1 H), 1.34-1.47 (m,
1 H).
Step 2. Synthesis of 2-(iodomethyl)-6-[4-(trifluoromethyl)phenyl]tetrahydro-2H-pyran
(C71).
[0202] To a solution of
C70 (2.3 g, 9.4 mmol) in acetonitrile (25 mL) was added
N-iodosuccinimide (95%, 5.0 g, 21 mmol), and the reaction mixture was stirred at room
temperature for 18 hours. After quenching with water (15 mL), the mixture was extracted
with ethyl acetate (3 x 15 mL), and the combined organic layers were washed with saturated
aqueous sodium chloride solution (15 mL), dried over sodium sulfate, filtered, and
concentrated
in vacuo. Purification via silica gel chromatography (Gradient: 1% to 10% ethyl acetate in
petroleum ether) provided the product as a yellow oil. By
1H NMR, this consisted of a roughly 2:1 mixture of isomers. Yield: 1.8 g, 4.9 mmol,
52%.
1H NMR (400 MHz, CDCl
3), characteristic peaks: δ [7.51 (d,
J=8.5 Hz) and 7.56-7.67 (m), total 4H], [4.51 (br d,
J=11 Hz) and 4.93 (br dd,
J=5, 5 Hz), total 1 H], [3.48-3.57 (m) and 3.78-3.86 (m), total 1 H], 3.26-2.42 (m,
2H).
Step 3. Synthesis of 2-[({6-[4-(trifluoromethyl)phenyl]tetrahydro-2H-pyran-2-yl}methyl)amino]ethanol (C72).
[0203] Compound
C71 was converted to the product using the method described for synthesis of
C29 in Example 6. The product was obtained as a yellow oil, which by
1H NMR was estimated to be a roughly 3:1 mixture of isomers. Yield: 1.1 g, 3.6 mmol,
73%.
1H NMR (400 MHz, CDCl
3), characteristic peaks: δ 7.41-7.66 (m, 4H), [4.43 (br d,
J=10.5 Hz) and 4.88 (br dd,
J=5, 5 Hz), total 1 H].
Step 4. Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-({trans-6-[4-(trifluoromethyl)phenyl]tetrahydro-2H-pyran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt (15) and 7-(4-methyl-1H-imidazol-1-yl)-2-({cis-6-[4-(trifluoromethyl)phenyl]tetrahydro-2H-pyran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt (16).
[0204] Compound
C72 was reacted with
P2 using the method described for synthesis of
1 in Example 1. In this case, the separation of stereoisomers was carried out via reversed
phase HPLC (Column: Boston Analytics, Boston Symmetrix ODS-H, 5 µm; Mobile phase A:
0.225% formic acid in water; Mobile phase B: 0.225% formic acid in acetonitrile; Gradient:
24% to 44% B). Example
16 came off the column before Example
15; both were obtained as white solids. The indicated relative stereochemistry was assigned
on the basis of NOE studies. Example
15: Yield, 4.7 mg, 8.8 µmol, 1.3%. LCMS
m/
z 487.0 [M+H
+].
1H NMR (400 MHz, CD
3OD) δ 8.57 (br s, 1 H), 7.82 (d,
J=8.0 Hz, 1 H), 7.57 (br AB quartet,
JAB=8 Hz, Δν
AB=21 Hz, 4H), 7.39-7.42 (m, 1 H), 7.23 (d,
J=8.0 Hz, 1 H), 5.01-5.06 (m, 1 H), 4.30-4.36 (m, 2H), 4.17-4.27 (m, 2H), 3.83-3.88
(m, 2H), 3.48-3.57 (m, 1 H), 2.28 (br s, 3H), 1.70-2.0 (m, 5H), 1.56-1.66 (m, 1 H).
Example
16: 32.8 mg, 61.6 µmol, 9%.
1H NMR (400 MHz, CD
3OD) δ 9.05 (br s, 1 H), 7.93 (d,
J=7.5 Hz, 1 H), 7.58 (br AB quartet,
JAB=8.5 Hz, Δν
AB=31 Hz, 4H), 7.58 (br s, 1 H), 7.28 (d,
J=7.5 Hz, 1 H), 4.52 (br d,
J=10.5 Hz, 1 H), 4.30-4.38 (m, 1 H), 4.21-4.29 (m, 1 H), 3.85-3.98 (m, 4H), 3.62 (dd,
J=13.8, 8.3 Hz, 1 H), 2.36 (s, 3H), 1.97-2.05 (m, 1 H), 1.72-1.93 (m, 3H), 1.34-1.52
(m, 2H).
Example 17
7-(4-Methyl-1H-imidazol-1-yl)-2-({(2S,4S,5R)-4-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt (17)
[0205]

Step 1. Synthesis of (3S,5S)-5-({[tert-butyl(diphenyl)silyl]oxy}methyl)-3-methyldihydrofuran-2(3H)-one (C73).
[0206] A solution of
C30 (1.02 g, 2.88 mmol) in tetrahydrofuran (15 mL) was added drop-wise to a -78 °C solution
of lithium bis(trimethylsilyl)amide (1.0 M in heptane, 3.45 mL, 3.45 mmol) in tetrahydrofuran
(12 mL); after 30 minutes, iodomethane (0.215 mL, 3.45 mmol) was added to the cold
solution, which was then stirred at -78 °C for 30 minutes, warmed to -50 °C and stirred
at that temperature for 3 hours. After quenching with aqueous ammonium chloride solution
(50% saturated, 20 mL), diethyl ether (20 mL) was added, and the aqueous layer was
extracted with diethyl ether (2 x 20 mL). The combined organic layers were washed
with saturated aqueous sodium chloride solution, dried over sodium sulfate, filtered,
and concentrated
in vacuo. The resulting oil (1.27 g) was dissolved in tetrahydrofuran (15 mL) and added drop-wise
to a -78 °C solution of lithium bis(trimethylsilyl)amide (1.0 M in heptane, 5.0 mL,
5.0 mmol) in tetrahydrofuran (10 mL). After the reaction mixture had stirred at -78
°C for 1 hour, it was allowed to warm briefly to -50 °C, then cooled back to -78 °C.
Saturated aqueous sodium sulfate solution (10 mL) was added, and the mixture was allowed
to slowly thaw. Water (10 mL) and diethyl ether (20 mL) were added, and the aqueous
layer was extracted with diethyl ether (2 x 20 mL). The combined organic layers were
washed with saturated aqueous sodium chloride solution, dried over sodium sulfate,
filtered, and concentrated under reduced pressure. Purification using silica gel chromatography
(0% to 50% ethyl acetate in heptane) afforded the product as a colorless oil, which
subsequently solidified. The indicated stereochemistry was assigned in accordance
with the work of
S. F. Martin et al., J. Org. Chem. 2000, 65, 1305-1318. Yield: 558 mg, 1.51 mmol, 52%.
1H NMR (400 MHz, CDCl
3) δ 7.66-7.70 (m, 4H), 7.38-7.48 (m, 6H), 4.44-4.51 (m, 1 H), 3.87 (dd, half of ABX
pattern,
J=11.3, 3.7 Hz, 1 H), 3.74 (dd, half of ABX pattern,
J=11.5, 4.3 Hz, 1 H), 2.71 (ddq,
J=11.6, 9.1,7.1 Hz, 1 H), 2.39 (ddd,
J=12.5, 9.2, 6.2 Hz, 1 H), 1.86 (ddd,
J=12.5, 11.7, 10.0 Hz, 1 H), 1.30 (d,
J=7.2 Hz, 3H), 1.07 (s, 9H). Step 2. Synthesis of (3
S,5
S)-5-({[
tert-butyl(diphenyl)silyl]oxy}methyl)-3-methyl-2-(4-(trifluoromethyl)phenyl)tetrahydrofuran-2-ol
(C74).
[0207] Compound
C73 was converted to the product using the method for synthesis of
C25 in Example 6. The product, obtained as an orange oil, was taken directly to the following
step.
Step 3. Synthesis of tert-butyl({(2S,4S,5R)-4-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methoxy)diphenylsilane
(C75).
[0208] Compound
C74 (≤1.51 mmol) was converted to the product, obtained as an oil, using the method described
for synthesis of
C26 in Example 6. Yield: 336 mg, 0.674 mmol, 45% over 2 steps.
1H NMR (400 MHz, CDCl
3) δ 7.73-7.78 (m, 4H), 7.53 (br d,
J=8.2 Hz, 2H), 7.37-7.48 (m, 8H), 5.06 (d,
J=7.4 Hz, 1 H), 4.14-4.21 (m, 1 H), 3.95 (dd, half of ABX pattern,
J=10.9, 4.1 Hz, 1 H), 3.86 (dd, half of ABX pattern,
J=10.9, 4.7 Hz, 1 H), 2.59-2.71 (m, 1 H), 2.17 (ddd,
J=12.4, 7, 7 Hz, 1 H), 1.66 (ddd,
J=12.4, 8.8, 7.5 Hz, 1 H), 1.11 (s, 9H), 0.58 (d,
J=7.0 Hz, 3H).
Step 4. Synthesis of {(2S,4S,5R)-4-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methanol (C76).
[0209] Deprotection of
C75 was carried out using the method described for synthesis of
C27 in Example 6. The product was obtained as an oil. The indicated stereochemistry for
the aryl group was assigned on the basis of NOE experiments. Yield: 139 mg, 0.534
mmol, 81 %. GCMS
m/
z 260 [M
+].
1H NMR (400 MHz, CDCl
3) δ 7.60 (br d,
J=8.2 Hz, 2H), 7.39-7.43 (m, 2H), 5.06 (d,
J=7.0 Hz, 1 H), 4.14-4.21 (m, 1 H), 3.90 (dd, half of ABX pattern,
J=11.7, 3.3 Hz, 1 H), 3.77 (dd, half of ABX pattern,
J=11.7, 6.2 Hz, 1 H), 2.62-2.73 (m, 1 H), 2.24 (ddd,
J=12.5, 7.6, 7.0 Hz, 1 H), 1.49 (ddd,
J=12.5, 8.6, 6.6 Hz, 1 H), 0.60 (d,
J=7.0 Hz, 3H).
Step 5. Synthesis of {(2S,4S,5R)-4-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl methanesulfonate
(C77).
[0210] Compound
C76 was converted to the product using the method described for synthesis of
C8 in Example 1; the product was obtained as an oil. Yield: 176 mg, 0.520 mmol, 100%.
1H NMR (400 MHz, CDCl
3) δ 7.61 (br d,
J=8 Hz, 2H), 7.38-7.42 (m, 2H), 5.09 (d,
J=7.2 Hz, 1 H), 4.41-4.49 (m, 2H), 4.30-4.37 (m, 1 H), 3.11 (s, 3H), 2.63-2.75 (m,
1 H), 2.34 (ddd,
J=12.7, 7.4, 7.4 Hz, 1 H), 1.53 (ddd,
J=12.7, 8.4, 6.6 Hz, 1 H), 0.62 (d,
J=7.0 Hz, 3H).
Step 6. Synthesis of 2-[({(2S,4S,5R)-4-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)amino]ethanol
(C78).
[0211] The product, obtained as an oil, was prepared from
C77 using the method employed for synthesis of
C29 in Example 6. Yield: 132 mg, 0.435 mmol, 86%. LCMS
m/
z 304.4 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 7.59 (br d,
J=8 Hz, 2H), 7.36-7.41 (m, 2H), 5.03 (d,
J=7.4 Hz, 1 H), 4.15-4.23 (m, 1 H), 3.67-3.71 (m, 2H), 2.82-3.00 (m, 4H), 2.59-2.71
(m, 1 H), 2.29 (ddd, J=12.3, 7.6, 6.8 Hz, 1 H), 1.38 (ddd,
J=12.5, 8.6, 7.0 Hz, 1 H), 0.59 (d,
J=7.0 Hz, 3H).
Step 7. Synthesis of 7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,4S,5R)-4-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt (17).
[0212] Conversion of
C78 to the product was carried out using the method described for synthesis of
6 in Example 6. After the chromatography on silica gel, the product was purified by
reversed phase HPLC (Column: Waters Sunfire C18, 5 µm; Mobile phase A: 0.05% trifluoroacetic
acid in water (v/v); Mobile phase B: 0.05% trifluoroacetic acid in acetonitrile (v/v);
Gradient: 5% to 100% B), affording the product as a solid. Yield: 12 mg, 20 µmol,
4%. LCMS
m/
z 487.3 [M+H
+].
1H NMR (600 MHz, DMSO-
d6) δ 9.37 (br s, 1 H), 8.05 (br d,
J=7.5 Hz, 1 H), 7.81 (br s, 1 H), 7.70 (br d,
J=7.9 Hz, 2H), 7.52 (br d,
J=7.9 Hz, 2H), 7.20 (d,
J=7.5 Hz, 1 H), 5.04 (d,
J=7.0 Hz, 1 H), 4.21-4.31 (m, 3H), 3.83-3.96 (m, 3H), 3.70 (dd,
J=13.8, 8.1 Hz, 1 H), 2.62-2.68 (m, 1 H), 2.31 (s, 3H), 2.28-2.36 (m, 1 H), 1.36-1.42
(m, 1 H), 0.52 (d,
J=7.0 Hz, 3H).
Example 18
2-({(2S,5R)-5-[3,5-Difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (18)
[0213]

Step 1. Synthesis of (2S)-1-[(2-hydroxyethyl)amino]-5-(trimethylsilyl)pent-4-yn-2-ol (C79).
[0214] A mixture of (2
S)-1-chloro-5-(trimethylsilyl)pent-4-yn-2-ol (80 g, 420 mmol) and 2-aminoethanol (110
g, 1.8 mol) was stirred at 80 °C for 18 hours. Silica gel chromatography (Gradient:
1% to 10% methanol in dichloromethane) provided the product as a yellow oil. Yield:
30 g, 140 mmol, 33%.
1H NMR (400 MHz, CD
3OD) δ 3.80-3.88 (m, 1 H), 3.61-3.72 (m, 2H), 2.84 (dd, J=12.3, 3.3 Hz, 1 H), 2.69-2.81
(m, 2H), 2.64 (dd,
J=12.0, 8.5 Hz, 1 H), 2.45 (dd, half of ABX pattern,
J=16.6, 5.5 Hz, 1 H), 2.37 (dd, half of ABX pattern,
J=16.6, 7.0 Hz, 1 H), 0.12 (s, 9H).
Step 2. Synthesis of N-(2-hydroxyethyl)-N-[(2S)-2-hydroxy-5-(trimethylsilyl)pent-4-yn-1-yl]-5-(4-methyl-1H-imidazol-1-yl)-6-oxo-1,6-dihydropyridine-2-carboxamide (C80).
[0215] Compound
C79 was converted to the product using the general method described for preparation of
1 in Example 1. In this synthesis, slightly less than one equivalent of HATU was employed,
the reaction was carried out in acetonitrile, and the extractions were done with ethyl
acetate. The crude product solution was dried over sodium sulfate in this case, and
the crude product was taken directly on to the following step.
Step 3. Synthesis of 2-[(2S)-2-hydroxy-5-(trimethylsilyl)pent-4-yn-1-yl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (C81).
[0216] Diisopropyl azodicarboxylate (14 g, 69 mmol) was added drop-wise to a 0 °C mixture
of crude
C80 (≤60 mmol) and triphenylphosphine (18.9 g, 72.0 mmol) in tetrahydrofuran (500 mL).
After being stirred at 0 °C for 2.5 hours, the reaction mixture was concentrated
in vacuo; purification by silica gel chromatography (Gradient: 1% to 6% methanol in dichloromethane)
afforded the product as a yellow solid. Yield: 7.0 g, 18 mmol, 30% over two steps.
Step 4. Synthesis of 2-[(2S)-2-hydroxypent-4-yn-1-yl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (C82).
[0217] A mixture of
C81 (6.5 g, 16 mmol) and potassium carbonate (2.25 g, 16.3 mmol) in methanol (150 mL)
was stirred at room temperature for 5 hours. The reaction mixture was concentrated
in vacuo and purified by silica gel chromatography (Gradient: 1% to 2.5% methanol in dichloromethane)
to provide the product as a yellow solid. Yield: 2.5 g, 7.7 mmol, 48%.
1H NMR (400 MHz, CD
3OD) δ 8.31 (d,
J=1.2 Hz, 1 H), 7.78 (d,
J=7.8 Hz, 1 H), 7.31-7.33 (m, 1 H), 7.25 (d,
J=7.8 Hz, 1 H), 4.33-4.39 (m, 2H), 4.04-4.12 (m, 1 H), 3.82-3.96 (m, 3H), 3.50 (dd,
J=13.7, 8.4 Hz, 1 H), 2.41-2.46 (m, 2H), 2.37 (t,
J=2.8 Hz, 1 H), 2.24 (d,
J=1.0 Hz, 3H).
Step 5. Synthesis of 2-{(2S)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]-2-hydroxypent-4-yn-1-yl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (C83).
[0218] Compound
C82 was reacted with 5-bromo-1,3-difluoro-2-(trifluoromethyl)benzene using the general
procedure described for synthesis of
C39 in Example 8. In this case, the reaction solvent was a 1.6:1 mixture of
N,N-dimethylformamide and triethylamine, and the catalyst employed was dichlorobis(triphenylphosphine)palladium(II).
Extraction was carried out with ethyl acetate, and the product, obtained as a light
orange solid, was purified via silica gel chromatography (Gradient: 0% to 100% [10%
(2 M ammonium in methanol) in ethyl acetate] in ethyl acetate). Yield: 505 mg, 0.997
mmol, 65%.
1H NMR (400 MHz, CDCl
3) δ 8.28 (d,
J=1.2 Hz, 1 H), 7.40 (d,
J=7.8 Hz, 1 H), 7.22 (d,
J=7.6 Hz, 1 H), 7.06-7.08 (m, 1 H), 7.04 (d,
J=9.8 Hz, 2H), 4.41 (ddd, half of ABXY pattern,
J=14.3, 7.2, 4.2 Hz, 1 H), 4.26-4.36 (m, 2H), 3.92-4.00 (m, 2H), 3.83 (ddd, half of
ABXY pattern,
J=13.5, 7.3, 4.2 Hz, 1 H), 3.55 (dd,
J=14.0, 8.3 Hz, 1 H), 2.68-2.80 (m, 2H), 2.28 (br s, 3H).
Step 6. Synthesis of 2-({(2S,5R)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione (18).
[0219] Di-µ-chlorodichlorobis(ethylene)diplatinum(II) (97%, 60 mg, 99 µmol), trifluoroacetic
acid (380 µL, 5.0 mmol) and water (89 µL, 5.0 mmol) were added to a solution of
C83 (250 mg, 0.494 mmol) in dichloromethane (5 mL), and the reaction mixture was stirred
at room temperature until analysis by thin layer chromatography indicated consumption
of starting material. The reaction mixture was cooled to -20 °C and treated with trifluoroacetic
acid (0.958 mL, 12.4 mmol) followed by drop-wise addition of triethylsilane (99%,
1.19 mL, 7.39 mmol) over 5 minutes. After slowly warming to room temperature, the
reaction was allowed to proceed for 1.5 hours, whereupon dichloromethane (50 mL) was
added, and the mixture was washed with water (25 mL) and with saturated aqueous sodium
chloride solution (25 mL). The organic layer was dried over magnesium sulfate, filtered,
and concentrated
in vacuo; purification via silica gel chromatography (Gradient: 0% to 70% [10% (2 M ammonium
in methanol) in ethyl acetate] in ethyl acetate) was followed by HPLC (Column: Phenomenex
Lux Cellulose-1, 5 µm; Gradient: 70% to 100% ethanol in heptane) to provide the product
as a solid. Yield: 40 mg, 79 µmol, 16%. LCMS
m/
z 509.0 [M+H
+].
1H NMR (400 MHz, CDCl
3) δ 8.35 (br s, 1 H), 7.49 (d,
J=7.6 Hz, 1 H), 7.29 (d,
J=7.6 Hz, 1 H), 7.16 (br s, 1 H), 6.98 (d,
J=10.4 Hz, 2H), 4.86-4.92 (m, 1 H), 4.31-4.41 (m, 3H), 4.14 (dd,
J=13.9, 2.7 Hz, 1 H), 3.92-4.01 (m, 1 H), 3.78-3.86 (m, 1 H), 3.47 (dd,
J=14.0, 8.5 Hz, 1 H), 2.37-2.48 (m, 1 H), 2.31 (s, 3H), 2.16-2.26 (m, 1 H), 1.69-1.87
(m, 2H).
Method A
Preparation of 2-substituted 7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-diones M1 via initial reductive amination
[0220]

Step 1. Synthesis of N-substituted 2-{[tert-butyl(dimethyl)silyl]oxylethanamine C84.
[0221] A solution of the primary amine (300 µmol) in methanol (1 mL) was treated with {[
tert-butyl(dimethyl)silyl]oxylacetaldehyde (28 µL, 150 µmol) and shaken at 30 °C for 40
minutes. The reaction vial was cooled to 0 °C, sodium borohydride (17 mg, 450 µmol)
was added, and the reaction was shaken at 30 °C for 100 minutes. The solvent was removed
in vacuo, water (1 mL) was added and the mixture was extracted with ethyl acetate (3 x 1 mL).
The combined organic layers were dried over sodium sulfate, filtered, concentrated
in vacuo, and purified via preparative thin layer chromatography. Step 2. Synthesis of
N-substituted 2-aminoethanol
C85.
[0222] A solution of
C84 in methanol (500 µL) was treated with a solution of acetyl chloride (188 µL) in methanol
(312 µL) at 30 °C for 16 hours. The solvent was removed
in vacuo.
Step 3. Synthesis of 2-substituted 7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione M1.
[0223] Compound
C85 was treated with
P1 (34.4 mg, 125 µmol), dichloromethane (2 mL), diisopropylethylamine (217 µL, 1.25
mmol) and O-(7-azabenzotriazol-1-yl)-
N,
N,
N',
N'-tetramethyluronium hexafluorophosphate (HATU, 97%, 122 mg, 320 µmol), then shaken
at 30 °C for 16 hours. The solvent was removed
in vacuo and the residue was treated with saturated aqueous sodium bicarbonate solution (2
mL) and extracted with ethyl acetate (3 x 1 mL). The combined organic layers were
dried over sodium sulfate, filtered, concentrated
in vacuo, and purified via reversed phase HPLC. Purifications were carried out using a Phenomenex
Gemini C18 column (8-10 µm), with the non-aqueous mobile phase consisting of ammonium
hydroxide in acetonitrile (pH 10) and employing an appropriate gradient.
Table 1
| Ex. # |

|
Method of Preparation; Non-commercial Starting Materials |
1H NMR (400 MHz, CDCl3), δ (ppm); Mass spectrum, observed ion m/z (M+1) or HPLC retention time (minutes); Mass spectrum m/z (M+1) (unless otherwise indicated) |
| 19 |

|
Example 11 |
2.20 minutes2; 426.2 |
| 20 |

|
Example 13 |
characteristic peaks: 2.33 (br s, 3H), 3.65 (br dd, J=6, 6 Hz, 2H), 4.31-4.43 (m, 2H), 4.93-4.98 (m, 1H), 5.17-5.27 (m, 1H), 7.05 (br dd,
J=8, 2 Hz, 1 H), 7.08-7.11 (m, 1 H), 7.18-7.23 (m, 2H), 7.30 (d, J=7.8 Hz, 1 H), 7.40 (br dd, J=8, 8 Hz, 1 H), 7.56 (d, J=7.8 Hz, 1 H), 8.43 (br s, 1 H); 473.3 |
| 21 |

|
Example 14 |
1.37-1.48 (m, 1H), 1.71-1.89 (m, 3H), 1.97-2.07 (m, 1 H), 2.12-2.22 (m, 1 H), 2.29
(s, 3H), 2.50-2.61 (m, 1 H), 3.43 (dd, J=13.7, 6.4 Hz, 1 H), 3.65 (ddd, J=13.3, 6.6, 4.1 Hz, 1 H), 3.80 (ddd, J=13.3, 8.4, 3.9 Hz, 1 H), 4.00 (dd, J=13.7, 9.6 Hz, 1 H), 4.21 (ddd, J=14.2, 8.5, 4.1 Hz, 1 H), 4.44 (ddd, J=14.2, 6.5, 4.0 Hz, 1 H), 4.60-4.65 (m, 1 H), 6.93-6.98 (m, 2H), 7.03 (d, J=7.7 Hz, 1 H), 7.11 (br s, 1 H), 7.15 (br d, J=7.7 Hz, 1 H), 7.32 (br dd, J=8.1, 7.7 Hz, 1 H), 7.34 (d, J=7.7 Hz, 1 H), 8.21 (br s, 1 H); 487.3 |
| 22 |

|
Example 15 |
2.55 minutes2; 459.2 |
| 23 |

|
Example 1; P5 |
1.03-1.49 (m, 4H), 1.75-2.00 (m, 5H), 2.27 (d, J=0.8 Hz, 3H), 2.47-2.56 (m, 1 H), 3.44-3.48 (m, 2H), 3.68 (dd, J=5.8, 5.7 Hz, 2H), 4.28-4.40 (m, 2H), 7.09-7.13 (m, 3H), 7.22-7.26 (m, 3H), 7.43 (d,
J=7.6 Hz, 1 H), 8.21 (d, J=1.2 Hz, 1 H); 451.1 |
| 24 |

|
Method A6 |
2.72 minutes7; 425 |
| 25 |

|
Method A9 |
2.85 minutes7; 439 |
| 26 |

|
Example 110 |
2.65 minutes2; 491.1 |
| 27 |

|
Example 1; P4 |
2.44 minutes2; 459.2 |
| 28 |

|
Example 112 |
2.26 minutes2; 453.0, 455.0 |
| 29 |

|
Example 1; P513 |
1.04-1.28 (m, 2H), 1.31-1.50 (m, 2H), 1.76-2.01 (m, 5H), 2.29 (br s, 3H), 2.48-2.58
(m, 1 H), 3.45-3.49 (m, 2H), 3.67-3.72 (m, 2H), 4.29-4.42 (m, 2H), 7.11-7.15 (m, 1
H), 7.12 (d, J=8.4 Hz, 2H), 7.25 (d, J=8.4 Hz, 2H), 7.24-7.28 (m, 1 H, assumed; obscured
by solvent peak), 7.44 (d, J=7.4 Hz, 1 H), 8.22 (br s, 1 H); 451 |
| 30 |

|
Example 4 |
2.49 minutes2; 506.3, 508.3 |
| 31 |

|
Example 4 |
2.60 minutes2; 524.3, 526.3 |
| 32 |

|
Example 4 |
2.46 minutes2; 506.3, 508.3 |
| 33 |

|
Example 3 |
2.58 minutes2; 459.3 |
| 34 |

|
Example 3 |
2.60 minutes2; 493.0, 493.5 |
| 35 |

|
Example 3 |
2.48 minutes2; 449.0 |
| 36 |

|
Example 314 |
2.61 minutes2; 457.0, 459.0 |
| 37 |

|
Example 315 |
2.85 minutes2; 467.1, 469.0 |
| 38 |

|
Example 3 |
2.57 minutes2; 441.1 |
| 39 |

|
Example 316 |
2.62 minutes2; 459.1 |
| 40 |

|
Example 317 |
2.69 minutes2; 451.2 |
| 41 |

|
Example 3 |
2.65 minutes2; 493.0, 495.0 |
| 42 |

|
Example 118 |
2.63 minutes2; 473.1, 475.1 |
| 43 |

|
Example 7 |
8.29 (d, J=1.2 Hz, 1 H), 7.62 (br d, J=8.2 Hz, 2H), 7.47 (d, J=7.8 Hz, 1 H), 7.42-7.46 (m, 2H), 7.29 (d, J=7.8 Hz, 1 H), 7.14-7.16 (m, 1 H), 4.92-4.97 (m, 1 H), 4.28-4.43 (m, 3H), 4.19 (dd,
J=14.0, 3.0 Hz, 1 H), 4.00 (ddd, half of ABXY pattern, J=13.5, 7.6, 4.3 Hz, 1 H), 3.82 (ddd, half of ABXY pattern, J=13.5, 7.2, 4.1 Hz, 1 H), 3.44 (dd, J=14.0, 8.2 Hz, 1 H), 2.37-2.46 (m, 1 H), 2.31 (d, J=1.0 Hz, 3H), 2.16-2.26 (m, 1 H), 1.73-1.89 (m, 2H); 473.2 |
| 44 |

|
Example 719,20 |
8.51 (br s, 1 H), 7.55 (d, J=7.6 Hz, 1 H), 7.33 (br d, half of AB quartet, J=8.4 Hz, 2H), 7.29 (d, J=7.8 Hz, 1 H), 7.24-7.28 (m, 2H, assumed; partially obscured by solvent peak), 7.17-7.20
(m, 1 H), 4.86 (dd, J=7.4, 6.8 Hz, 1 H), 4.26-4.42 (m, 3H), 4.17 (dd, J=14.0, 2.9 Hz, 1 H), 3.98 (ddd, half of ABXY pattern, J=13.5, 7.5, 4.2 Hz, 1 H), 3.81 (ddd, half of ABXY pattern, J=13.5, 7.3, 4.2 Hz, 1 H), 3.42 (dd, J=14.0, 8.2 Hz, 1 H), 2.35 (d, J=0.8 Hz, 3H), 2.31-2.40 (m, 1 H), 2.14-2.23 (m, 1 H), 1.72-1.87 (m, 2H); 439.1 |
| 45 |

|
Example 721,22 |
8.22 (d, J=1.2 Hz, 1 H), 7.75 (br d, J=8.8 Hz, 2H), 7.45 (d, J=7.6 Hz, 1 H), 7.42 (br d, J=8.2 Hz, 2H), 7.28 (d, J=7.8 Hz, 1 H), 7.13-7.15 (m, 1 H), 4.91-4.96 (m, 1 H), 4.29-4.43 (m, 3H), 4.18 (dd,
J=14.1, 2.9 Hz, 1 H), 3.99 (ddd, half of ABXY pattern, J=13.5, 7.3, 4.5 Hz, 1 H), 3.82 (ddd, half of ABXY pattern, J=13.4, 7.1, 4.4 Hz, 1H), 3.45 (dd, J=14.0, 8.5 Hz, 1 H), 2.38-2.47 (m, 1 H), 2.29 (br s, 3H), 2.16-2.25 (m, 1 H), 1.72-1.88
(m, 2H); 531.2 |
| 46 |

|
Example 623,24 |
8.22 (d, J=1.2 Hz, 1 H), 7.45 (d, J=7.8 Hz, 1 H), 7.33-7.38 (m, 2H), 7.27-7.30 (m, 1 H, assumed; partially obscured by
solvent peak), 7.19-7.24 (m, 2H), 7.13-7.15 (m, 1 H), 4.87-4.92 (m, 1 H), 4.27-4.43
(m, 3H), 4.18 (dd, J=13.9, 2.9 Hz, 1 H), 3.94-4.02 (m, 1 H), 3.77-3.84 (m, 1H), 3.43 (dd, J=13.9, 8.2 Hz, 1 H), 2.34-2.42 (m, 1 H), 2.28-2.31 (m, 3H), 2.15-2.24 (m, 1 H), 1.73-1.89
(m, 2H); 489.2 |
| 47 |

|
Example 7 |
9.45 (d, J=1.6 Hz, 1 H), 7.89 (d, J=7.8 Hz, 1 H), 7.59 (dd, J=7.6, 7.6 Hz, 1 H), 7.38 (d, J=7.6 Hz, 1 H), 7.32-7.36 (m, 1 H), 7.16-7.21 (m, 2H), 4.90-4.96 (m, 1H), 4.32-4.42
(m, 3H), 4.15-4.21 (m, 1 H), 3.98-4.06 (m, 1 H), 3.82-3.90 (m, 1 H), 3.47 (dd, J=14.1, 8.6 Hz, 1H), 2.55 (d, J=1.0 Hz, 3H), 2.38-2.48 (m, 1 H), 2.18-2.27 (m, 1 H), 1.71-1.89 (m, 2H); 491.0 |
| 48 |

|
Example 7 |
8.22 (br s, 1 H), 7.45 (d, J=7.6 Hz, 1 H), 7.27 (d, J=7.8 Hz, 1 H), 7.21 (br d, J=8.2 Hz, 2H), 7.12-7.15 (m, 1 H), 7.06 (br d, J=8.0 Hz, 2H), 4.82-4.88 (m, 1 H), 4.21-4.41 (m, 3H), 4.16 (dd, J=14.0, 2.6 Hz, 1 H), 3.93-4.02 (m, 1 H), 3.76-3.84 (m, 1H), 3.41 (dd, J=14, 8 Hz, 1 H), 2.29 (br s, 3H), 2.26-2.37 (m, 1 H), 2.12-2.22 (m, 1 H), 1.73-1.94
(m, 3H), 0.94-1.00 (m, 2H), 0.67-0.72 (m, 2H); 7.45 minutes25 |
| 49 |

|
Example 726 |
8.21 (br s, 1H), 7.44 (d, J=7.8 Hz, 1 H), 7.31 (br d, J=8.2 Hz, 1 H), 7.26 (d, J=7.6 Hz, 1 H), 7.11-7.15 (m, 1 H), 6.94 (dd, J=8.1, 1.9 Hz, 1 H), 6.84 (d, J=1.8 Hz, 1 H), 5.05-5.10 (m, 1 H), 4.23-4.42 (m, 3H), 4.18 (dd, J=13.9, 2.9 Hz, 1 H), 4.00 (ddd, J=13.5, 7.5, 4.4 Hz, 1 H), 3.81 (s, 3H), 3.78-3.87 (m, 1 H), 3.40-3.51 (m, 1 H), 2.34-2.45
(m, 1 H), 2.28 (br s, 3H), 2.08-2.18 (m, 1 H), 1.61-1.73 (m, 2H); 469.2 |
| 50 |

|
Example 8 |
8.23 (br s, 1H), 7.46 (d, J=7.6 Hz, 1 H), 7.33-7.41 (m, 2H), 7.29 (d, J=7.6 Hz, 1 H), 7.11-7.14 (m, 1 H), 5.12-5.19 (m, 1 H), 4.83-4.93 (m, 1 H), 4.35-4.44
(m, 1 H), 4.26-4.35 (m, 1 H), 4.05-4.13 (m, 1 H), 3.71-3.79 (m, 1 H), 3.62-3.71 (m,
1 H), 2.45-2.57 (m, 1H), 2.28 (s, 3H), 2.15-2.25 (m, 1 H), 1.84-1.95 (m, 1 H), 1.71-1.82
(m, 1 H), 1.30 (d, J=6.9 Hz, 3H); 523.3 |
| 51 |

|
Example 827,28,29; P3 |
8.25 (br s, 1 H), 7.55 (br dd, J=8, 7 Hz, 1 H), 7.47 (d, J=7.7 Hz, 1 H), 7.32 (d, J=7.7 Hz, 1 H), 7.12-7.21 (m, 3H), 4.81-4.93 (m, 2H), 4.44 (ddd, J=14.1, 6.9, 4.0 Hz, 1 H), 4.24 (ddd, J=14.1, 8.1, 4.0 Hz, 1 H), 4.08-4.15 (m, 1 H), 3.76 (ddd, half of ABXY pattern, J=13.4, 8.2, 3.9 Hz, 1 H), 3.67 (ddd, half of ABXY pattern, J=13.4, 6.9, 4.1 Hz, 1 H), 2.38-2.46 (m, 1H), 2.30 (d, J=0.9 Hz, 3H), 2.16-2.25 (m, 1 H), 1.77-1.91 (m, 2H), 1.32 (d, J=6.9 Hz, 3H); 505.0 |
| 52 |

|
Example 929 |
8.42 (br s, 1 H), 7.53 (br d, J=7.9 Hz, 1 H), 7.51 (d, J=7.7 Hz, 1 H), 7.33 (d, J=7.7 Hz, 1 H), 7.23 (br d, J=8 Hz, 1 H), 7.14-7.16 (m, 1 H), 7.02 (br s, 1 H), 5.12-5.17 (m, 1 H), 4.85-4.93 (m,
1 H), 4.40 (ddd, half of ABXY pattern, J=14, 7, 4 Hz, 1 H), 4.31 (ddd, half of ABXY pattern, J=14, 7.5, 4 Hz, 1 H), 4.03-4.10 (m, 1 H), 3.86 (s, 3H), 3.82 (ddd, J=13, 7.5, 4 Hz, 1H), 3.69 (ddd, J=13, 7, 4 Hz, 1 H), 2.43-2.53 (m, 1 H), 2.34 (d, J=0.8 Hz, 3H), 2.10-2.19 (m, 1 H), 1.67-1.79 (m, 2H), 1.33 (d, J=6.9 Hz, 3H); 517.3 |
| 53 |

|
Example 930,29 |
8.31 (br s, 1 H), 7.71 (br d, J=8 Hz, 1 H), 7.52-7.59 (m, 2H), 7.49 (d, J=7.7 Hz, 1 H), 7.33 (d, J=7.7 Hz, 1 H), 7.13-7.15 (m, 1 H), 5.20-5.25 (m, 1 H), 4.94 (dq, J=9.0, 6.9 Hz, 1 H), 4.44 (ddd, half of ABXY pattern, J=14.2, 7.2, 4.0 Hz, 1 H), 4.31 (ddd, half of ABXY pattern, J=14.1, 7.7, 4.1 Hz, 1 H), 4.06-4.14 (m, 1 H), 3.77 (ddd, half of ABXY pattern, J=13.3, 7.7, 4.0 Hz, 1 H), 3.69 (ddd, half of ABXY pattern, J=13.4, 7.2, 4.1 Hz, 1 H), 2.56-2.65 (m, 1 H), 2.31 (d, J=1.0 Hz, 3H), 2.15-2.24 (m, 1 H), 1.69-1.87 (m, 2H), 1.32 (d, J=6.9 Hz, 3H); 521.2 |
| 54 |

|
Example 1031,32 |
8.23 (br s, 1H), 7.47 (d, J=7.4 Hz, 1 H), 7.34 (d, J=7.4 Hz, 1 H), 7.27-7.33 (m, 1 H, assumed; partially obscured by solvent peak), 7.13-7.15
(m, 1 H), 7.07 (dd, J=9.2, 6.0 Hz, 1 H), 5.01-5.06 (m, 1H), 4.82-4.91 (m, 1 H), 4.49 (ddd, J=14.0, 6.2, 4.3 Hz, 1 H), 4.23 (ddd, J=14, 8, 4 Hz, 1 H), 4.03-4.10 (m, 1 H), 3.63-3.79 (m, 2H), 2.40-2.49 (m, 1 H), 2.29
(s, 3H), 2.15-2.24 (m, 1 H), 1.75-1.88 (m, 2H), 1.32 (d, J=7.0 Hz, 3H); 489.2 |
| 55 |

|
Example 1031,32 |
8.26 (br s, 1 H), 7.48 (d, J=7.8 Hz, 1H), 7.33 (d J=7.6 Hz, 1H), 7.12-7.15 (m, 1 H), 6.96 (br d, J=7.8 Hz, 2H), 4.78-4.88 (m, 2H), 4.48 (ddd, J=14.2, 6.4, 4.0 Hz, 1 H), 4.20 (ddd, J=14.1, 8.4, 4.1 Hz, 1 H), 4.05-4.12 (m, 1 H), 3.62-3.77 (m, 2H), 2.33-2.42 (m, 1H),
2.30 (s, 3H), 2.15-2.26 (m, 1 H), 1.76-1.88 (m, 2H), 1.31 (d, J=6.8 Hz, 3H); 489.2 |
| 56 |

|
Example 633,34 |
8.24 (br s, 1 H), 7.46-7.60 (m, 4H), 7.46 (d, J=7.6 Hz, 1 H), 7.28 (d, J=7.8 Hz, 1 H), 7.13-7.16 (m, 1 H), 4.91-4.97 (m, 1 H), 4.26-4.42 (m, 3H), 4.17 (dd,
J=14.0, 2.9 Hz, 1 H), 3.98 (ddd, J=13.5, 7.6, 4.3 Hz, 1 H), 3.82 (ddd, J=13.5, 7.3, 4.2 Hz, 1 H), 3.46 (dd, J=14.0, 8.1 Hz, 1 H), 2.37-2.46 (m, 1H), 2.29 (d, J=0.8 Hz, 3H), 2.17-2.25 (m, 1 H), 1.74-1.90 (m, 2H); 473.2 |
| 57 |

|
Example 832,29,35 |
8.35 (br s, 1 H), 7.50 (d, J=7.8 Hz, 1 H), 7.36 (d, J=7.4 Hz, 1 H), 7.23 (d, J=9.8 Hz, 1 H), 7.12-7.18 (m, 1 H), 6.80 (d, J=5.8 Hz, 1 H), 5.00-5.06 (m, 1 H), 4.81-4.90 (m, 1 H), 4.50 (ddd, J=14.1, 6.6, 3.9 Hz, 1 H), 4.21 (ddd, J=14.1, 8.6, 3.9 Hz, 1 H), 3.99-4.07 (m, 1 H), 3.78 (s, 3H), 3.73-3.82 (m, 1 H), 3.68
(ddd, half of ABXY pattern, J=13.3, 6.6, 3.9 Hz, 1 H), 2.38-2.47 (m, 1 H), 2.32 (br s, 3H), 2.12-2.21 (m, 1 H),
1.63-1.80 (m, 2H), 1.31 (d, J=7.0 Hz, 3H); 501.2 |
| 58 |

|
Example 832,29,36 |
8.34 (br s, 1 H), 7.47-7.53 (m, 2H), 7.31 (d, J=7.8 Hz, 1 H), 7.25-7.29 (m, 1 H, assumed; partially obscured by solvent peak), 7.20-7.23
(m, 1 H), 7.13-7.16 (m, 1 H), 5.09 (br dd, J=7.4, 7.0 Hz, 1 H), 4.83-4.92 (m, 1 H), 4.40 (ddd, half of ABXY pattern, J=14.1, 7.0, 3.9 Hz, 1 H), 4.29 (ddd, half of ABXY pattern, J=14.1, 7.8, 4.3 Hz, 1 H), 4.02-4.10 (m, 1 H), 3.76 (ddd, half of ABXY pattern, J=13.5, 7.4, 3.7 Hz, 1 H), 3.67 (ddd, half of ABXY pattern, J=13.5, 7.2, 3.9 Hz, 1 H), 2.39-2.49 (m, 1 H), 2.32 (s, 3H), 2.15-2.26 (m, 1 H), 1.72-1.83
(m, 2H), 1.31 (d, J=7.0 Hz, 3H); 537.2 |
| 59 |

|
Example 1337 |
9.49 (d, J=1.5 Hz, 1 H), 8.06 (d, J=7.8 Hz, 1 H), 7.76 (br s, 1 H), 7.63 (s, 4H), 7.33 (br d, J=7.8 Hz, 1H), 5.01 (br dd, J=7, 7 Hz, 1 H), 4.30-4.47 (m, 3H), 3.89-4.04 (m, 3H), 3.75 (dd, J=13.9, 8.4 Hz, 1 H), 2.40-2.50 (m, 1H), 2.44 (s, 3H), 2.18-2.28 (m, 1 H), 1.78-1.90
(m, 2H); 523.3 |
| 60 |

|
Example 738,39 |
characteristic peaks: 8.23 (d, J=1.2 Hz, 1 H), 7.50 (br d, J=8.4 Hz, 2H), 7.45 (d, J=7.8 Hz, 1 H), 7.38 (br d, J=8.3 Hz, 2H), 7.27 (d, J=7.8 Hz, 1 H), 7.12-7.15 (m, 1 H), 4.88-4.94 (m, 1 H), 4.25-4.42 (m, 3H), 4.18 (dd,
J=13.9, 2.9 Hz, 1 H), 3.99 (ddd, J=13.5, 7.7, 4.2 Hz, 1H), 3.81 (ddd, J=13.5, 7.2, 4.2 Hz, 1 H), 3.43 (dd, J=14.0, 8.1 Hz, 1 H), 2.34-2.45 (m, 1H), 2.29 (s, 3H), 2.14-2.25 (m, 1 H), 1.93 (t,
J=18.2 Hz, 3H); 469.3 |
| 61 |

|
Example 940,41,29 |
1H NMR (600 MHz, DMSO-d6), d 8.24 (br s, 1H), 7.80 (d, J=7.4 Hz, 1 H), 7.52 (d, J=2.6 Hz, 1 H), 7.38-7.40 (m, 1 H), 7.36 (dd, J=8.8, 2.6 Hz, 1 H), 7.19 (t, J=73.7 Hz, 1 H), 7.17 (d, J=8.8 Hz, 1 H), 7.16 (d, J=7.9 Hz, 1 H), 5.00 (dd, J=7.4, 7.0 Hz, 1 H), 4.67-4.73 (m, 1H), 4.34 (ddd, J=14.0, 6.1, 4.0 Hz, 1 H), 4.06-4.14 (m, 2H), 3.77 (ddd, J=13.6, 6.1, 4.0 Hz, 1 H), 3.64 (ddd, J=13.6, 8.8, 3.5 Hz, 1 H), 2.33-2.40 (m, 1H), 2.15 (s, 3H), 2.10-2.17 (m, 1 H), 1.73-1.79
(m, 1 H), 1.62-1.70 (m, 1 H), 1.23 (d, J=7.0 Hz, 3H); 519.0, 521.0 |
| 62 |

|
Example 1842 |
8.26 (br s, 1 H), 7.46 (d, J=7.8 Hz, 1 H), 7.28 (d, J=7.8 Hz, 1 H), 7.15 (br s, 1 H), 6.96 (d, J=7.4 Hz, 2H), 4.82-4.87 (m, 1 H), 4.29-4.40 (m, 3H), 4.15 (dd, J=14.0, 2.7 Hz, 1 H), 3.93-4.01 (m, 1 H), 3.77-3.85 (m, 1 H), 3.44 (dd, J=13.8, 8.4 Hz, 1 H), 2.34-2.43 (m, 1H), 2.30 (s, 3H), 2.14-2.24 (m, 1 H), 1.70-1.85
(m, 2H); 475.2 |
| 63 |

|
Example 743 |
1H NMR (600 MHz, DMSO-d6), δ 9.29 (br s, 1 H), 8.02 (d, J=7.5 Hz, 1 H), 7.87 (d, J=7.5 Hz, 1 H), 7.77 (br s, 1 H), 7.66-7.75 (m, 2H), 7.50 (dd, J=7.9, 7.5 Hz, 1 H), 7.19 (d, J=7.9 Hz, 1 H), 5.11 (br dd, J=7, 7 Hz, 1 H), 4.24-4.32 (m, 3H), 3.82-3.90 (m, 3H), 3.78 (dd, half of ABX pattern,
J=13.6, 7.9 Hz, 1 H), 2.30 (s, 3H), 2.3-2.35 (m, 1 H), 2.10-2.17 (m, 1 H), 1.75-1.82
(m, 1 H), 1.63-1.71 (m, 1H); 473.2 |
| 64 |

|
Example 1744 |
2.62 minutes2; 487.3 |
| 65 |

|
Example 18 |
1H NMR (600 MHz, DMSO-d6), δ 9.21 (br s, 1 H), 8.00 (d, J=7.9 Hz, 1 H), 7.89 (d, J=8.3 Hz, 1 H), 7.79 (dd, J=8.3, 2.2 Hz, 1 H), 7.73-7.76 (m, 2H), 7.19 (d, J=7.9 Hz, 1 H), 5.06-5.11 (m, 1 H), 4.25-4.32 (m, 3H), 3.83-3.88 (m, 3H), 3.78 (dd,
half of ABX pattern, J=14.0, 7.9 Hz, 1 H), 2.30 (s, 3H), 2.3-2.36 (m, 1H), 2.11-2.18 (m, 1H), 1.75-1.82
(m, 1 H), 1.64-1.71 (m, 1 H); 507.2, 509.2 |
| 66 |

|
Example 8 |
2.67 minutes2; 523.2 |
| 67 |

|
Example 9 |
8.36 (br s, 1 H), 7.50 (d, J=7.8 Hz, 1 H), 7.35 (d, J=7.6 Hz, 1 H), 7.21-7.24 (m, 1 H), 7.13-7.16 (m, 1 H), 7.06 (br dd, J=9.5, 1.5 Hz, 1 H), 4.77-4.88 (m, 2H), 4.49 (ddd, J=14.2, 6.4, 4.0 Hz, 1 H), 4.20 (ddd, J=14.2, 8.5, 4.2 Hz, 1 H), 4.05-4.12 (m, 1 H), 3.62-3.78 (m, 2H), 2.33 (br s, 3H),
2.3-2.42 (m, 1H), 2.16-2.26 (m, 1H), 1.77-1.90 (m, 2H), 1.31 (d, J=7.0 Hz, 3H); 505.3 |
| 68 |

|
Example 932 |
8.33 (br s, 1 H), 7.73 (dd, J=8.8, 5.7 Hz, 1 H), 7.48 (d, J=7.8 Hz, 1 H), 7.22-7.32 (m, 3H, assumed; partially obscured by solvent peak), 7.12-7.15
(m, 1H), 5.14-5.20 (m, 1 H), 4.88-4.97 (m, 1 H), 4.43 (ddd, J=14.0, 7.0, 3.9 Hz, 1 H), 4.26 (ddd, J=14.1, 8.1, 4.0 Hz, 1 H), 4.02-4.09 (m, 1 H), 3.75 (ddd, half of ABXY pattern, J=13.4, 7.9, 3.9 Hz, 1 H), 3.66 (ddd, half of ABXY pattern, J=13.3, 7.0, 4.0 Hz, 1 H), 2.37-2.46 (m, 1H), 2.32 (d, J=1 Hz, 3H), 2.17-2.27 (m, 1 H), 1.70-1.89 (m, 2H), 1.32 (d, J=6.8 Hz, 3H); 505.3 |
| 69 |

|
Example 945 |
8.28 (br s, 1H), 7.65 (d, J=7.0 Hz, 1 H), 7.61 (d, J=10.2 Hz, 1 H), 7.48 (d, J=7.8 Hz, 1 H), 7.36 (d, J=7.4 Hz, 1 H), 7.12-7.15 (m, 1 H), 5.10-5.16 (m, 1 H), 4.94 (dq, J=9.0, 7.0 Hz, 1 H), 4.52-4.60 (m, 1 H), 4.12-4.20 (m, 1 H), 4.02-4.09 (m, 1 H), 3.63-3.75
(m, 2H), 2.38-2.48 (m, 1H), 2.31 (s, 3H), 2.20-2.3 (m, 1 H), 1.82-1.91 (m, 1 H), 1.70-1.81
(m, 1 H), 1.31 (d, J=7.0 Hz, 3H); 539.3 |
| 70 |

|
Example 945 |
8.27 (br s, 1 H), 7.54-7.62 (m, 2H), 7.47 (d, J=7.8 Hz, 1 H), 7.30 (d, J=7.8 Hz, 1 H), 7.12-7.15 (m, 1 H), 5.22-5.28 (m, 1 H), 4.90-4.99 (m, 1 H), 4.44 (ddd,
J=14, 7, 4 Hz, 1 H), 4.29 (ddd, J=14, 8, 4 Hz, 1 H), 4.02-4.09 (m, 1 H), 3.63-3.77 (m, 2H), 2.45-2.55 (m, 1H), 2.31
(s, 3H), 2.13-2.21 (m, 1 H), 1.69-1.86 (m, 2H), 1.30 (d, J=7.0 Hz, 3H); 539.3 |
| 71 |

|
Example 9 |
1H NMR (600 MHz, DMSO-d6), δ 8.24 (d, J=1.1 Hz, 1 H), 7.78 (d, J=7.9 Hz, 1 H), 7.53-7.55 (m, 1 H), 7.38-7.40 (m, 1 H), 7.09-7.11 (m, 1 H), 7.08 (d,
J=7.7 Hz, 1 H), 5.14-5.18 (m, 1 H), 4.56-4.62 (m, 1 H), 4.16-4.24 (m, 2H), 4.10-4.15
(m, 1 H), 3.65-3.75 (m, 2H), 2.37-2.43 (m, 1 H), 2.15 (d, J=1 Hz, 3H), 2.07-2.14 (m, 1 H), 1.84-1.91 (m, 1 H), 1.75-1.82 (m, 1 H), 1.22 (d, J=7.0 Hz, 3H); 493.4 |
- 1. 3,4-Difluoro-N-hydroxybenzenecarboximidoyl chloride (M. R. Barbachyn et al., J. Med. Chem. 2003, 46, 284-302) was subjected to a cycloaddition with ethylene, and the product was acylated
according to the method of A. Corsaro et al., J. Heterocyclic Chem. 1989, 26, 1691-9, to afford methyl 3-(3,4-difluorophenyl)-4,5-dihydro-1,2-oxazole-4-carboxylate.
After ammonolysis, the resulting primary amide was converted to the tert-butoxycarbonyl-protected amine via a Hofmann rearrangement. Deprotection and resolution
with (-)-anicyphos [(4S)-2-hydroxy-4-(2-methoxyphenyl)-5,5-dimethyl-1,3,2-dioxaphosphorinane-2-oxide] yielded
(4R)-3-(3,4-difluorophenyl)-4,5-dihydro-1,2-oxazol-4-amine. This was converted to
the requisite 2-aminoethanol using the general procedure described in Method A.
- 2. HPLC conditions. Column: Waters Atlantis dC18, 4.6 x 50 mm, 5 µm; Mobile phase
A: 0.05% trifluoroacetic acid in water (v/v); Mobile phase B: 0.05% trifluoroacetic
acid in acetonitrile (v/v); Gradient: 5% to 95% B over 4.0 minutes, linear; Flow rate:
2 mL/minute.
- 3. The reaction of tert-butyl [cis-3-hydroxycyclopentyl]carbamate (see M. Pineschi et al., Org. Lett. 2005, 7, 3605-3607) and 3-(trifluoromethyl)phenol under Mitsunobu conditions provided tert-butyl {trans-3-[3-(trifluoromethyl)phenoxy]cyclopentyl}carbamate. Deprotection using acidic conditions
afforded trans-3-[3-(trifluoromethyl)phenoxy]cyclopentanamine. This was converted to the requisite
2-aminoethanol using the general procedure described in Method A.
- 4. tert-Butyl [(2-hydroxycyclopentyl)methyl]carbamate was subjected to Mitsunobu reaction
and deprotection as described in footnote 3 to afford 1-{2-[3-(trifluoromethyl)phenoxy]cyclopentyl}methanamine.
This was converted to the requisite 2-aminoethanol using the general method described
in Method A. Supercritical fluid chromatography was carried out on the final product
(Column: Chiralpak AD-H; Eluant: 7:3 carbon dioxide / propanol) and the second-eluting
enantiomer was collected. The absolute and relative configuration of this compound
were not determined.
- 5. tert-Butyl (trans-3-hydroxycyclobutyl)carbamate (P. Liu, PCT Int. Appl. 2007, WO 2007062332 A2) was treated with carbon tetrabromide and triphenylphosphine to produce tert-butyl (cis-3-bromocyclobutyl)carbamate, which was subjected to reaction with 2-(trifluoromethyl)phenol,
then deprotected with acid to yield trans-3-[2-(trifluoromethyl)phenoxy]cyclobutanamine. This was converted to the requisite
2-aminoethanol using the general method described in Method A.
- 6. The requisite amine may be prepared according to T. A. Shepherd et al., J. Med. Chem. 2002, 45, 2101-2111.
- 7. HPLC conditions. Column: Waters XBridge C18, 2.1 x 50 mm, 5 µm; Mobile phase A:
0.0375% trifluoroacetic acid in water (v/v); Mobile phase B: 0.01875% trifluoroacetic
acid in acetonitrile (v/v); Gradient: 1% to 5% B over 0.6 minutes, then 5% to 100%
B over 3.4 minutes; Flow rate: 0.8 mL/minute.
- 8. Cyclobutanecarbonitrile was alkylated with 1-(bromomethyl)-4-fluorobenzene, and
the product was reduced with lithium aluminum hydride to generate 1-[1-(4-fluorobenzyl)cyclobutyl]methanamine.
- 9. Reaction of the Grignard reagent prepared from 1-(bromomethyl)-3,5-difluorobenzene
with 6-oxabicyclo[3.1.0]hexane gave trans-2-(3,5-difluorobenzyl)cyclopentanol. Conversion to the mesylate, followed by displacement
with sodium azide and reduction with triphenylphosphine afforded cis-2-(3,5-difluorobenzyl)cyclopentanamine.
- 10. tert-Butyl [trans-3-(hydroxymethyl)cyclobutyl]carbamate and 4-fluoro-2-(trifluoromethyl)phenol were
used in a preparation similar to footnote 3.
- 11. The commercially available amine was converted to the requisite 2-aminoethanol
using the general method described in Method A.
- 12. 2-Chlorocyclohexanone was reacted with 4-chlorophenol, followed by reductive amination
with 2-aminoethanol to provide the requisite 2-aminoethanol derivative.
- 13. Supercritical fluid chromatography was carried out on the final product (Column:
Chiralpak OJ-H; Eluant: 7:3 carbon dioxide / methanol) and the first eluting enantiomer
was collected. NOE studies indicated cis stereochemistry. The indicated absolute stereochemistry was arbitrarily assigned.
- 14. Directed metallation of 2-chloro-1-fluoro-4-methoxybenzene with n-butyllithium and tetramethylethylenediamine allowed regiospecific introduction of
a methyl group. Subsequent methyl ether cleavage with boron tribromide afforded 3-chloro-4-fluoro-2-methylphenol.
- 15. 3-(Propan-2-yl)phenol was chlorinated using oxone and potassium chloride to give
the requisite phenol.
- 16. The requisite naphthalenol was prepared as described by J. T. Repine et al., Tetrahedron Lett. 2007, 48, 5539-5541.
- 17. Methyl 2-fluoro-6-hydroxybenzoate was treated with methylmagnesium bromide to
afford the tertiary alcohol, which was hydrogenated over palladium on carbon to give
the requisite phenol.
- 18. 5-(3,4-Dichlorophenyl)dihydrofuran-2(3H)-one (see G. J. Quallich et al., J. Org. Chem. 1990, 55, 4971-4973) was reduced with diisobutylaluminum hydride, treated with acetic anhydride, and
converted to 5-(3,4-dichlorophenyl)tetrahydrofuran-2-carbonitrile by treatment with
trimethylsilyl cyanide and boron trifluoride diethyl etherate. Reduction with diisobutylaluminum
hydride afforded 1-[5-(3,4-dichlorophenyl)tetrahydrofuran-2-yl]methanamine, which
was converted to the requisite 2-aminoethanol using the general approach described
in Method A.
- 19. The requisite [cis-5-(4-chlorophenyl)tetrahydrofuran-2-yl]methanol was prepared by hydrogenation of
5-(4-chlorophenyl)furan-2-carbaldehyde in the presence of ruthenium(IV) oxide hydrate.
- 20. Example 46 was isolated from the racemic mixture via supercritical fluid chromatography
(Column: Chiralcel OJ-H, 5 µm; Eluent: 4:1 carbon dioxide / methanol containing 0.2%
isopropylamine), and was the second of the enantiomers that eluted from the column.
The first-eluting material was the enantiomer of Example 46, and exhibited an IC50 of 511 nM. The absolute stereochemistry of Example 46 was assigned on the basis of
its lower IC50 (see Table 1), in analogy to the other compounds described herein.
- 21. The requisite {cis-5-[4-(pentafluoro-λ6-sulfanyl)phenyl]tetrahydrofuran-2-yl}methanol was prepared via Suzuki reaction of
(5-formylfuran-2-yl)boronic acid with 1-bromo-4-(pentafluoro-λ6-sulfanyl)benzene, followed by hydrogenation in the presence of ruthenium(IV) oxide
hydrate.
- 22. Example 47 was isolated from the racemic mixture via supercritical fluid chromatography
(Column: Chiralcel OJ-H, 5 µm; Eluent: 65:35 carbon dioxide / propanol containing
0.2% isopropylamine), and was the second of the enantiomers that eluted from the column.
The first-eluting material was the enantiomer of Example 47, and exhibited an IC50 of 329 nM. The absolute stereochemistry of Example 47 was assigned on the basis of
its lower IC50 (see Table 1), in analogy to the other compounds described herein.
- 23. {cis-5-[4-(Trifluoromethoxy)phenyl]tetrahydrofuran-2-yl}methanol was prepared from 5-bromofuran-2-carbaldehyde
and [4-(trifluoromethoxy)phenyl]boronic acid using a method analogous to that described
in footnote 21.
- 24. Example 48 was isolated from the racemic mixture via supercritical fluid chromatography
(Column: Chiralcel OJ-H, 5 µm; Eluent: 3:1 carbon dioxide / methanol containing 0.2%
isopropylamine), and was the second of the enantiomers that eluted from the column.
The first-eluting material was the enantiomer of Example 48, and exhibited an IC50 of 1230 nM. The absolute stereochemistry of Example 48 was assigned on the basis
of its lower IC50 (see Table 1), in analogy to the other compounds described herein.
- 25. tert-Butyl{[(2S,5R)-5-(4-chloro-2-methoxyphenyl)tetrahydrofuran-2-yl]methoxy}diphenylsilane was prepared
from (2S)-1-{[tert-butyl(diphenyl)silyl]oxy}-5-(4-chloro-2-methoxyphenyl)pent-4-yn-2-ol using the general
method of T. X. M. Nguyen et al., Letters in Organic Chemistry 2009, 6, 630-636. This alkyne was prepared via reaction of tert-butyl[(2S)-oxiran-2-ylmethoxy]diphenylsilane with 4-chloro-1-ethynyl-2-methoxybenzene, using
n-butyllithium and boron trifluoride diethyl etherate.
- 26. In this case, reaction with di-µ-chlorodichlorobis(ethylene)diplatinum(II) yielded
(4S,5S)-5-(dibenzylamino)-1-[3-fluoro-4-(trifluoromethyl)phenyl]-4-hydroxyhexan-1-one rather
than the corresponding 2,3-dihydrofuran. Reaction with p-toluenesulfonic acid and trimethyl orthoformate, followed by subjection to triethylsilane
and boron trifluoride diethyl etherate, afforded (1S)-N,N-dibenzyl-1-{(2S)-5-[3-fluoro-4-(trifluoromethyl)phenyl]-2,3-dihydrofuran-2-yl}ethanamine.
- 27. The final ring closure was carried out via a Mitsunobu reaction using diisopropyl
azodicarboxylate.
- 28. The Sonogashira product in this case was converted to the next intermediate using
aqueous platinum(II) chloride.
- 29. The final ring closure was effected with cesium carbonate in N,N-dimethylformamide rather than lithium bis(trimethylsilyl)amide.
- 30. The requisite (1S)-1-[(2S,5R)-5-aryltetrahydrofuran-2-yl]ethanamine was prepared from C48 according to Example 9, except that the Sonogashira product in this case was converted
to intermediate tert-butyl {(1S)-1-[(2S)-5-hydroxy-5-aryltetrahydrofuran-2-yl]ethyl}carbamate or tert-butyl {(1S)-1-[(2S)-5-methoxy-5-aryltetrahydrofuran-2-yl]ethyl}carbamate using, respectively, aqueous
platinum(II) chloride or platinum(II) chloride and trimethyl orthoformate.
- 31. 2-[({cis-5-[3-(Trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)amino]ethanol was prepared
via reaction of cis-2-(bromomethyl)-5-[3-(trifluoromethyl)phenyl]tetrahydrofuran (see H. Ebel et al., PCT Int. Appl., 2010070032, June 24, 2010) with 2-aminoethanol.
- 32. Example 58 was isolated from the racemic mixture via supercritical fluid chromatography
(Column: Chiralcel OJ-H, 5 µm; Eluent: 4:1 carbon dioxide / methanol containing 0.2%
isopropylamine), and was the second of the enantiomers that eluted from the column.
The first-eluting material was the enantiomer of Example 58, and exhibited an IC50 of 1040 nM. The absolute stereochemistry of Example 58 was assigned on the basis
of its lower IC50 (see Table 1), in analogy to the other compounds described herein.
- 33. 1-Chloro-2-fluoro-4-iodo-5-methoxybenzene was used as starting material; see J. M. Blaney et al., PCT Int. Appl., 2008150914, Dec 11, 2008.
- 34. Sandmeyer reaction of 4-chloro-2-(trifluoromethoxy)aniline afforded the requisite
5-chloro-2-iodophenyl trifluoromethyl ether.
- 35. The requisite {cis-5-[4-(pentafluoroethyl)phenyl]tetrahydrofuran-2-yl}methanol was prepared via Suzuki
reaction of (5-formylfuran-2-yl)boronic acid with 1-bromo-4-(pentafluoroethyl)benzene,
followed by hydrogenation over palladium on carbon. 1-Bromo-4-(pentafluoroethyl)benzene
was prepared according to the method of W. Lambert et al., PCT Int. Appl., 2011017513, Feb 10, 2011.
- 36. The requisite {cis-5-[4-(1,1-difluoroethyl)phenyl]tetrahydrofuran-2-yl}methanol was prepared via Suzuki
reaction of 5-bromofuran-2-carbaldehyde with 2-[4-(1,1-difluoroethyl)phenyl]-4,4,5,5-tetramethyl-1,3,2-dioxaborolane,
followed by hydrogenation in the presence of ruthenium(IV) oxide hydrate.
- 37. Example 62 was isolated from the racemic mixture via HPLC (Column: Phenomenex
Lux Cellulose-3, 5 µm; Gradient: 50% to 100% ethanol in heptane), and was the second
of the enantiomers that eluted from the column. The first-eluting material was the
enantiomer of Example 62, and exhibited an IC50 of 723 nM. The absolute stereochemistry of Example 62 was assigned on the basis of
its lower IC50 (see Table 1), in analogy to the other compounds described herein.
- 38. 1-Bromo-4-chloro-2-(difluoromethoxy)benzene was prepared according to M. Ge et al., U.S. Pat. Appl. Publ., 20070265332, Nov 15, 2007.
- 39. In this case, reaction was carried out with di-µ-chlorodichlorobis(ethylene)diplatinum(II)
and water, to yield intermediate tert-butyl [(1S)-1-{(2S)-5-[4-chloro-2-(difluoromethoxy)phenyl]-5-hydroxytetrahydrofuran-2-yl}ethyl]carbamate.
- 40. The trans isomer of Example 64 (2-{[(2S,5S)-5-(4-chloro-3,5-difluorophenyl)tetrahydrofuran-2-yl]methyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione) was also isolated from the final step. This compound
had an IC50 of 184 nM.
- 41. (2S)-1-{[tert-Butyl(dimethyl)silyl]oxy}-5-[2-(trifluoromethyl)phenyl]pent-4-yn-2-ol (prepared in
analogous fashion to the alkyne described in footnote 26) was converted to {(2S,5R)-5-[2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methanol using boron trifluoride
diethyl etherate and triethylsilane.
- 42. Example 66 was a minor diastereomer isolated during purification of Example 17,
and was presumed to have the stereochemistry shown.
- 43.The requisite aryl starting material was prepared from the appropriate fluorinated
aniline via halogenation with an N-halosuccinimide, followed by Sandmeyer reaction.
Table 2
| Ex. # |
Structure |
Method of Preparation |
HPLC retention time (minutes); Mass spectrum m/z (M+1) |
| 72 |

|
Example 71 |
2.16 minutes2; 487.3 |
| 73 |

|
Example 71 |
2.20 minutes2; 487.3 |
- 1. The appropriate homochiral 2-aminopropan-1-ol was used in place of 2-aminoethanol.
- 2. HPLC conditions. Column: Waters Atlantis dC18, 4.6 x 50 mm, 5 µm; Mobile phase
A: 0.05% trifluoroacetic acid in water (v/v); Mobile phase B: 0.05% trifluoroacetic
acid in acetonitrile (v/v); Gradient: 5% to 95% B over 4.0 minutes, linear; Flow rate:
2 mL/minute.
Cell-based y-secretase assay with ELISA readout
[0224] The ability of compounds to modulate production of amyloid beta protein Aβ(1-42)
was determined using human WT-APP overexpressing CHO cells. Cells were plated at 22,000
cells/100 µL well in 96 well tissue culture treated, clear plates (Falcon) in DMEM/F12
based medium and incubated for 24 hours at 37°C. Compounds for testing were diluted
in 100% DMSO to achieve an eleven points, half log, dose response for IC
50 determinations. Compounds were added in fresh medium to achieve 1% final DMSO. Appropriate
vehicle or inhibitor controls were added into control wells individually to obtain
minimum or maximum inhibition values, respectively, for the assay signal window before
the plates were incubated for ∼24 hours at 37°C. This procedure produces conditioned
media in each well which is tested for Aβ(1-42) levels in the ELISA detection step
described next. The remaining cell cultures in each well are also tested for cell
toxicity as described below.
[0225] Coating of ELISA assay plates was initiated by addition of 50 µL/well of an in-house
Aβ(1-42) specific antibody at (3 µg/mL) in 0.1 M NaHCO
3 (pH 9.0) into black 384-well Maxisorp
® plates (Nunc) and incubated overnight at 4°C. The capture antibody was then aspirated
from the ELISA assay plates and plates were washed via (2 x 100 µL to 4 x 100 µL)
washes with Wash Buffer (Dulbecco's PBS, 0.05% Tween 20). 90 µL/well of Blocking Buffer
(Dulbecco's PBS, 1.0% BSA (Sigma A7030)) was then added to plates. Ambient temperature
incubation was allowed to proceed for a minimum of two hours. Blocking buffer was
then removed and 20 µL/well Assay Buffer (Dulbecco's PBS, 1.0% BSA (Sigma A7030),
0.05% Tween 20) was then added. At this point, 40 µL (in duplicate) of experimental
conditioned media (described above) were transferred into wells of the blocked ELISA
plates containing the capture antibody, followed by overnight incubation at 4°C. Cell
toxicity was also measured in the corresponding remaining cells after removal of the
conditioned media for the Aβ(1-42) assay by a colorimetric cell proliferation assay
(CellTiter 96
® AQ
ueous One Solution Cell Proliferation Assay, Promega) according to the manufacturer's instructions.
[0226] After overnight incubation of the ELISA assay plates at 4°C, unbound Aβ peptides
were removed via (2 x 100 µL to 4 x 100 µL) washes with Wash Buffer. Europium (Eu)
labeled (custom labeled, Perkin Elmer) Aβ(1-16) 6e10 Monoclonal Antibody (Covance
#SIG-39320) was added, (50 µL /well Eu-6e10 @ 1:10,000, 20 uM EDTA) in Assay Buffer.
Incubation at ambient temperature for a minimum of 2 hours was followed by (2 x 100
µL to 4 x 100 µL) washes with Wash Buffer, before 30 µL/well of Delfia Enhancement
Solution (Perkin Elmer) was added. Following a one hour ambient temperature incubation,
the plates were read on an EnVision plate reader (Perkin Elmer) using standard DELFIA
TRF settings. Data analysis including inhibitory IC
50 determination was performed using nonlinear regression fit analysis (in-house software)
and the appropriate plate mean values for the maximum and minimum inhibition controls.
Table 3: Biological Data for Examples 1-73
| Ex. # |
Aβ 42B IC50 (nM)a |
IUPAC Name |
| 1 |
211b |
7-(4-methyl-1H-imidazol-1-yl)-2-{trans-2-[2-(trifluoromethyl)phenoxy]cyclobutyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt |
| 2 |
300b |
7-(4-methyl-1H-imidazol-1-yl)-2-{trans-2-[2-(trifluoromethyl)phenoxy]cyclopentyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 3 |
60.6b |
2-{trans-2-[(6,7-difluoronaphthalen-1-yl)oxy]cyclobutyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 4 |
483 |
2-({3-[4-chloro-3-(trifluoromethyl)phenyl]-4,5-dihydro-1,2-oxazol-5-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 5 |
140 |
2-{cis-2-[4-fluoro-2-(trifluoromethyl)phenoxy]cyclopentyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 6 |
25 |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,3S,5R)-3-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 7 |
73.5 |
2-({(2S,4R,5S)-4-Fluoro-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 8 |
14.3c |
7-(4-methyl-1H-imidazol-1-yl)-2-[(1S)-1-{(2S,5R)-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 9 |
9.1c |
2-[(1S)-1-{(2S,5R)-5-[4-chloro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 10 |
3.34 |
2-[(1S)-1-{(2S,5R)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 11 |
40.5 |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 12 |
725 |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2R,5S)-5-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 13 |
236 |
7-(4-methyl-1H-imidazol-1-yl)-2-({cis-2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt |
| 14 |
1040b |
7-(4-methyl-1H-imidazol-1-yl)-2-({trans-2-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt |
| 15 |
29.9 |
7-(4-methyl-1H-imidazol-1-yl)-2-({trans-6-[4-(trifluoromethyl)phenyl]tetrahydro-2H-pyran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt |
| 16 |
96.6 |
7-(4-methyl-1H-imidazol-1-yl)-2-({cis-6-[4-(trifluoromethyl)phenyl]tetrahydro-2H-pyran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, formate salt |
| 17 |
38.4 |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,4S,5R)-4-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt |
| 18 |
16 |
2-({(2S,5R)-5-[3,5-difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 19 |
1460 |
2-[(4R)-3-(3,4-difluorophenyl)-4,5-dihydroisoxazol-4-yl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 20 |
1360b |
7-(4-methyl-1H-imidazol-1-yl)-2-{trans-3-[3-(trifluoromethyl)phenoxy]cyclopentyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 21 |
188 |
7-(4-methyl-1H-imidazol-1-yl)-2-({2-[3-(trifluoromethyl)phenoxy]cyclopentyl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 22 |
789b |
7-(4-methyl-1H-imidazol-1-yl)-2-{trans-3-[2-(trifluoromethyl)phenoxy]cyclobutyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 23 |
98 |
2-{[3-(4-chlorophenyl)cyclohexyl]methyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 24 |
563 |
2-[cis-2-(3,5-difluorophenyl)cyclopentyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 25 |
561 |
2-[cis-2-(3,5-difluorobenzyl)cyclopentyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 26 |
303 |
2-(trans-3-{[4-fluoro-2-(trifluoromethyl)phenoxy]methyl}cyclobutyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 27 |
469 |
7-(4-methyl-1H-imidazol-1-yl)-2-{cis-2-[2-(trifluoromethyl)phenoxy]cyclobutyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 28 |
591 |
2-[2-(4-chlorophenoxy)cyclohexyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 29 |
80 |
2-{[(1R,3S)-3-(4-chlorophenyl)cyclohexyl]methyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 30 |
711c |
2-({3-[2-chloro-5-(trifluoromethyl)phenyl]-4,5-dihydroisoxazol-5-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 31 |
353 |
2-({3-[3-chloro-2-fluoro-5-(trifluoromethyl)phenyl]-4,5-dihydro-1,2-oxazol-5-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 32 |
429 |
2-({3-[2-chloro-3-(trifluoromethyl)phenyl]-4,5-dihydro-1,2-oxazol-5-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 33 |
217b |
7-(4-methyl-1H-imidazol-1-yl)-2-{trans-2-[3-(trifluoromethyl)phenoxy]cyclobutyl}-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 34 |
120 |
2-{trans-2-[4-chloro-2-(trifluoromethyl)phenoxy]cyclobutyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 35 |
162 |
2-{trans-2-[(7-fluoro-2,3-dihydro-1H-inden-4-yl)oxy]cyclobutyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 36 |
146b |
2-[trans-2-(3-chloro-4-fluoro-2-methylphenoxy)cyclobutyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 37 |
158 |
2-{trans-2-[4-chloro-3-(propan-2-yl)phenoxy]cyclobutyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 38 |
164 |
7-(4-methyl-1H-imidazol-1-yl)-2-[trans-2-(naphthalen-1-yloxy)cyclobutyl]-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 39 |
112 |
2-{trans-2-[(7-fluoronaphthalen-1-yl)oxy]cyclobutyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 40 |
153 |
2-{trans-2-[3-fluoro-2-(propan-2-yl)phenoxy]cyclobutyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 41 |
157 |
2-{trans-2-[2-chloro-3-(trifluoromethyl)phenoxy]cyclobutyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 42 |
117 |
2-{[5-(3,4-dichlorophenyl)tetrahydrofuran-2-yl]methyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt |
| 43 |
27.6c |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 44 |
52.1 |
2-{[(2S,5R)-5-(4-chlorophenyl)tetrahydrofuran-2-yl]methyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 45 |
26.6c |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-[4-(pentafluoro-lambda∼6∼-sulfanyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 46 |
60.3 |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-[4-(trifluoromethoxy)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 47 |
15.7c |
2-({(2S,5R)-5-[3-fluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 48 |
63.8 |
2-{[(2S,5R)-5-(4-cyclopropylphenyl)tetrahydrofuran-2-yl]methyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 49 |
21.6 |
2-{[(2S,5R)-5-(4-chloro-2-methoxyphenyl)tetrahydrofuran-2-yl]methyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 50 |
11 |
2-[(1S)-1-{(2S,5R)-5-[2,3-difluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 51 |
8.35c |
2-[(1S)-1-{(2S,5R)-5-[3-fluoro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 52 |
15 |
2-[(1S)-1-{(2S,5R)-5-[2-methoxy-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 53 |
29.1 |
2-[(1S)-1-{(2S,5R)-5-[2-chloro-4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 54 |
11.4 |
2-{(1S)-1-[(2S,5R)-5-(4-chloro-2,5-difluorophenyl)tetrahydrofuran-2-yl]ethyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 55 |
5.48c |
2-{(1S)-1-[(2S,5R)-5-(4-chloro-3,5-difluorophenyl)tetrahydrofuran-2-yl]ethyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 56 |
81.2 |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-[3-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 57 |
11.1 |
2-{(1S)-1-[(2S,5R)-5-(4-chloro-5-fluoro-2-methoxyphenyl)tetrahydrofuran-2-yl]ethyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 58 |
14.5 |
2-[(1S)-1-{(2S,5R)-5-[4-chloro-2-(trifluoromethoxy)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 59 |
157 |
7-(4-methyl-1H-imidazol-1-yl)-2-({cis-5-[4-(pentafluoroethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione,hydrochloride salt |
| 60 |
73.3 |
2-({(2S,5R)-5-[4-(1,1-difluoroethyl)phenyl]tetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 61 |
24.6 |
2-[(1S)-1-{(2S,5R)-5-[4-chloro-2-(difluoromethoxy)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 62 |
13.3 |
2-{[(2S,5R)-5-(4-chloro-3,5-difluorophenyl)tetrahydrofuran-2-yl]methyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 63 |
73.3 |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-[2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt |
| 64 |
73.5 |
7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,4R,5R)-4-methyl-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt |
| 65 |
26.8 |
2-({(2S,5R)-5-[4-chloro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione, trifluoroacetate salt |
| 66 |
33.5 |
2-[(1S)-1-{(2S,5R)-5-[4,5-difluoro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 67 |
5.78 |
2-{(1S)-1-[(2S,5R)-5-(3,4-dichloro-5-fluorophenyl)tetrahydrofuran-2-yl]ethyl}-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 68 |
24.2 |
2-[(1S)-1-{(2S,5R)-5-[4-fluoro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 69 |
7.84 |
2-[(1S)-1-{(2S,5R)-5-[4-chloro-5-fluoro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 70 |
10 |
2-[(1S)-1-{(2S,5R)-5-[4-chloro-3-fluoro-2-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}ethyl]-7-(4-methyl-1H-imidazol-1-yl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 71 |
52.4 |
7-(4-methyl-1H-imidazol-1-yl)-2-[(1S)-1-{(2S,5R)-5-[5-(trifluoromethyl)thiophen-2-yl]tetrahydrofuran-2-yl}ethyl]-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 72 |
46.4 |
(3S)-3-methyl-7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
| 73 |
19.8 |
(3R)-3-methyl-7-(4-methyl-1H-imidazol-1-yl)-2-({(2S,5R)-5-[4-(trifluoromethyl)phenyl]tetrahydrofuran-2-yl}methyl)-3,4-dihydro-2H-pyrido[1,2-a]pyrazine-1,6-dione |
a. ReportedIC50 values are the geometric mean of 2 - 4 determinations.
b. IC50 value is from a single determination.
c. Reported IC50 value is the geometric mean of ≥5 determinations.
d. Not determined |