[0001] The present invention relates to pyrrolobenzodiazepines (PBDs) having a labile C2
or N10 protecting group in the form of a linker to an antibody.
Background to the invention
Pyrrolobenzodiazepines
[0002] Some pyrrolobenzodiazepines (PBDs) have the ability to recognise and bond to specific
sequences of DNA; the preferred sequence is PuGPu. The first PBD antitumour antibiotic,
anthramycin, was discovered in 1965 (
Leimgruber, et al., J. Am. Chem. Soc., 87, 5793-5795 (1965);
Leimgruber, et al., J. Am. Chem. Soc., 87, 5791-5793 (1965)). Since then, a number of naturally occurring PBDs have been reported, and over
10 synthetic routes have been developed to a variety of analogues (
Thurston, et al., Chem. Rev. 1994, 433-465 (1994);
Antonow, D. and Thurston, D.E., Chem. Rev. 2011 111 (4), 2815-2864). Family members include abbeymycin (
Hochlowski, et al., J. Antibiotics, 40, 145-148 (1987)), chicamycin (
Konishi, et al., J. Antibiotics, 37, 200-206 (1984)), DC-81 (Japanese Patent
58-180 487;
Thurston, et al., Chem. Brit., 26, 767-772 (1990);
Bose, et al., Tetrahedron, 48, 751-758 (1992)), mazethramycin (
Kuminoto, et al., J. Antibiotics, 33, 665-667 (1980)), neothramycins A and B (
Takeuchi, et al., J. Antibiotics, 29, 93-96 (1976)), porothramycin (
Tsunakawa, et al., J. Antibiotics, 41, 1366-1373 (1988)), prothracarcin (
Shimizu, et al, J. Antibiotics, 29, 2492-2503 (1982);
Langley and Thurston, J. Org. Chem., 52, 91-97 (1987)), sibanomicin (DC-102)(
Hara, et al., J. Antibiotics, 41, 702-704 (1988);
Itoh, et al., J. Antibiotics, 41, 1281-1284 (1988)), sibiromycin (
Leber, et al., J. Am. Chem. Soc., 110, 2992-2993 (1988)) and tomamycin (
Arima, et al., J. Antibiotics, 25, 437-444 (1972)). PBDs are of the general structure:

[0003] They differ in the number, type and position of substituents, in both their aromatic
A rings and pyrrolo C rings, and in the degree of saturation of the C ring. In the
B-ring there is either an imine (N=C), a carbinolamine(NH-CH(OH)), or a carbinolamine
methyl ether (NH-CH(OMe)) at the N10-C11 position which is the electrophilic centre
responsible for alkylating DNA. All of the known natural products have an (S)-configuration
at the chiral C11a position which provides them with a right-handed twist when viewed
from the C ring towards the A ring. This gives them the appropriate three-dimensional
shape for isohelicity with the minor groove of B-form DNA, leading to a snug fit at
the binding site (
Kohn, In Antibiotics III. Springer-Verlag, New York, pp. 3-11 (1975);
Hurley and Needham-VanDevanter, Acc. Chem. Res., 19, 230-237 (1986)). Their ability to form an adduct in the minor groove, enables them to interfere
with DNA processing, hence their use as antitumour agents.
[0005] The present inventors have described dimer PBD compounds having linker groups for
connection to a cell binding agent, such as an antibody, in
WO 2011/130613 and
WO 2011/130616. The linker in these compounds is attached to the PBD core via the C2 position, and
are generally cleaved by action of an enzyme on the linker group. In
WO 2011/130598, the linker in these compounds is attached to one of the available N10 positions
on the PBD core, and are generally cleaved by action of an enzyme on the linker group.
Antibody-drug conjugates
[0008] The present inventors have developed particular PBD dimer antibody conjugates.
Disclosure of the Invention
[0009] A first aspect of the present invention comprises a conjugate of formula
ConjA

ConjB

ConjC:

ConjD

ConjE:

where Ab is an antibody that binds to PSMA, the antibody comprising a VH domain having
the sequence according to to any one of SEQ ID NOs. 1, 3, 5, 7, 8, 9, or 10, optionally
further comprising a VL domain having the sequence according to any one of SEQ ID
NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17, or 18; and; and wherein the drug loading
(p) of drugs (D) to antibody (Ab) is an integer from 1 to about 8.
[0010] There is provided a method of making a conjugate selected from the group consisting
of ConjA, ConjB, ConjC, ConjD and ConjE comprising conjugating a compound which is
selected respectively from A:
B:

C:

D:

and E:

with an antibody as defined below.
[0011] WO 2011/130615 discloses compound 26:

which is the parent compound of A. Compound A comprises this PBD with a linker for
attachment to a cell binding agent. The cell binding agent provides a number of ethylene
glycol moieties to provide solubility which is useful in the synthesis of conjugates.
[0014] Compound B differs from compound 30 by only having a (CH
2)
3 tether between the PBD moieties, instead of a (CH
2)
5 tether, which reduces the lipophilicity of the released PBD dimer. The linking group
is attached to the C2-phenyl group in the para rather than meta position.
[0015] WO 2011/130613 discloses compound 93:

Compound C differs from this in two respects. The cell binding agent provides an increased
number of ethylene glycol moieties to provide solubility which is useful in the synthesis
of conjugates, and the phenyl substiuent provide two rather than one oxygen atom,
which also aids solubility. Compound C's strucutre may also mean it binds more strongly
in the minor groove.
[0016] Compounds A, B and C have two sp
2 centres in each C-ring, which may allow for stronger binding in the minor groove
of DNA, than for compounds with only one sp
2 centre in each C-ring.
[0017] WO 2011/130598 discloses compound 80:

Compound D differs from this by comprising an iodoacetamide group for linking to the
cell binding agent. This group may offer advantages over compound 80 with regards
to its stability when bound to a cell binding agent (see below). The malemide group
in compound 80 can undergo a retro-Michael reaction, becoming unconjugated from the
cell binding agent, and thus vunerable to scavenging by other thiol containing biological
molecules, such as albumin and glutathione. Such unconjugation cannot occur with compound
A. Also, the iodoacetamide group may avoid other unwanted side reactions.
[0018] Compound E differs from previously disclosed PBD dimers with a drug linker having
a C2-3 endo-double bond, by having a smaller, less lipophilic C2 substituent, e.g.
4F-phenyl, propylene. As such, the conjugates of compound B (see below) are less likely
to aggregate once synthesised. Such aggregation of conjugates can be measured by Size
exclusion chromatography (SEC).
[0019] Both compound D and E have two sp
2 centres in each C-ring, which may allow for stronger binding in the minor groove
of DNA, than for compounds with only one sp
2 centre in each C-ring.
Detailed description of the invention
[0020] The present invention is suitable for use in providing a PBD compound to a preferred
site in a subject. The conjugate allows the release of an active PBD compound that
does not retain any part of the linker. There is no stub present that could affect
the reactivity of the PBD compound. Thus ConjA would release the compound RelA:

ConjB would release the compound RelB:

ConjC would release the compound ReIC:

ConjD would release the compound RelD:

and ConjE would release the compound RelE:

[0021] The speficied link between the PBD dimer and the antibody, in the present invention
is preferably stable extracellularly. Before transport or delivery into a cell, the
antibody-drug conjugate (ADC) is preferably stable and remains intact, i.e. the antibody
remains linked to the drug moiety. The linkers are stable outside the target cell
and may be cleaved at some efficacious rate inside the cell. An effective linker will:
(i) maintain the specific binding properties of the antibody; (ii) allow intracellular
delivery of the conjugate or drug moiety; (iii) remain stable and intact, i.e. not
cleaved, until the conjugate has been delivered or transported to its targetted site;
and (iv) maintain a cytotoxic, cell-killing effect or a cytostatic effect of the PBD
drug moiety. Stability of the ADC may be measured by standard analytical techniques
such as mass spectroscopy, HPLC, and the separation/analysis technique LC/MS.
[0022] Delivery of the compounds of formulae RelA, RelB, RelC, RelD or RelE is achieved
at the desired activation site of the conjugates of formulae ConjA, ConjB, ConjC,
ConjD or ConjE by the action of an enzyme, such as cathepsin, on the linking group,
and in particular on the valine-alanine dipeptide moiety.
Antibody
[0023] In one aspect the antibody is in one aspect the antibody is an antibody that binds
to PSMA, the antibody comprising a VH domain having the sequence according to any
one of SEQ ID NOs. 1, 3, 5, 7, 8, 9, or 10.
[0024] The antibody may further comprise a VL domain. In some embodiments the antibody further
comprises a VL domain having the sequence according to any one of SEQ ID NOs. 2, 4,
6, 11, 12, 13, 14, 15, 16, 17, or 18.
[0025] In some embodiments the antibody comprises a VH domain paired with a VL domain, the
VH and VL domains having sequences selected from the group consisting of:
SEQ ID NO. 1 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 3 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 5 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 7 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 8 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 9 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18; or
SEQ ID NO. 10 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16,
17, or 18. For example SEQ ID NO. 1 paired with SEQ ID NO. 2, SEQ ID NO. 3 paired
with SEQ ID NO. 4, SEQ ID NO. 5 paired with SEQ ID NO. 6, SEQ ID NO. 7 paired with
SEQ ID NO. 11, SEQ ID NO. 7 paired with SEQ ID NO. 12, SEQ ID NO. 7 paired with SEQ
ID NO. 13, SEQ ID NO. 7 paired with SEQ ID NO. 14, SEQ ID NO. 7 paired with SEQ ID
NO. 15, SEQ ID NO. 7 paired with SEQ ID NO. 16, SEQ ID NO. 7 paired with SEQ ID NO.
17, SEQ ID NO. 7 paired with SEQ ID NO. 18, SEQ ID NO. 8 paired with SEQ ID NO. 11,
SEQ ID NO. 8 paired with SEQ ID NO. 12, SEQ ID NO. 8 paired with SEQ ID NO. 13, SEQ
ID NO. 8 paired with SEQ ID NO. 14, SEQ ID NO. 8 paired with SEQ ID NO. 15, SEQ ID
NO. 8 paired with SEQ ID NO. 16, SEQ ID NO. 8 paired with SEQ ID NO. 17, SEQ ID NO.
8 paired with SEQ ID NO. 18, SEQ ID NO. 9 paired with SEQ ID NO. 11, SEQ ID NO. 9
paired with SEQ ID NO. 12, SEQ ID NO. 9 paired with SEQ ID NO. 13, SEQ ID NO. 9 paired
with SEQ ID NO. 14, SEQ ID NO. 9 paired with SEQ ID NO. 15, SEQ ID NO. 9 paired with
SEQ ID NO. 16, SEQ ID NO. 9 paired with SEQ ID NO. 17, SEQ ID NO. 9 paired with SEQ
ID NO. 18, SEQ ID NO. 10 paired with SEQ ID NO. 11, SEQ ID NO. 10 paired with SEQ
ID NO. 12, SEQ ID NO. 10 paired with SEQ ID NO. 13, SEQ ID NO. 10 paired with SEQ
ID NO. 14, SEQ ID NO. 10 paired with SEQ ID NO. 15, SEQ ID NO. 10 paired with SEQ
ID NO. 16, SEQ ID NO. 10 paired with SEQ ID NO. 17, or SEQ ID NO. 10 paired with SEQ
ID NO. 18.
[0026] The VH and VL domain(s) may pair so as to form an antibody antigen binding site that
binds PSMA.
[0027] In some embodiments the antibody is an intact antibody comprising a VH domain paired
with a VL domain, the VH and VL domains having sequences selected from the group consisting
of:
SEQ ID NO. 1 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 3 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 5 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 7 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 8 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18;
SEQ ID NO. 9 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16, 17,
or 18; or
SEQ ID NO. 10 paired with any one of SEQ ID NOs. 2, 4, 6, 11, 12, 13, 14, 15, 16,
17, or 18. For example SEQ ID NO. 1 paired with SEQ ID NO. 2, SEQ ID NO. 3 paired
with SEQ ID NO. 4, SEQ ID NO. 5 paired with SEQ ID NO. 6, SEQ ID NO. 7 paired with
SEQ ID NO. 11, SEQ ID NO. 7 paired with SEQ ID NO. 12, SEQ ID NO. 7 paired with SEQ
ID NO. 13, SEQ ID NO. 7 paired with SEQ ID NO. 14, SEQ ID NO. 7 paired with SEQ ID
NO. 15, SEQ ID NO. 7 paired with SEQ ID NO. 16, SEQ ID NO. 7 paired with SEQ ID NO.
17, SEQ ID NO. 7 paired with SEQ ID NO. 18, SEQ ID NO. 8 paired with SEQ ID NO. 11,
SEQ ID NO. 8 paired with SEQ ID NO. 12, SEQ ID NO. 8 paired with SEQ ID NO. 13, SEQ
ID NO. 8 paired with SEQ ID NO. 14, SEQ ID NO. 8 paired with SEQ ID NO. 15, SEQ ID
NO. 8 paired with SEQ ID NO. 16, SEQ ID NO. 8 paired with SEQ ID NO. 17, SEQ ID NO.
8 paired with SEQ ID NO. 18, SEQ ID NO. 9 paired with SEQ ID NO. 11, SEQ ID NO. 9
paired with SEQ ID NO. 12, SEQ ID NO. 9 paired with SEQ ID NO. 13, SEQ ID NO. 9 paired
with SEQ ID NO. 14, SEQ ID NO. 9 paired with SEQ ID NO. 15, SEQ ID NO. 9 paired with
SEQ ID NO. 16, SEQ ID NO. 9 paired with SEQ ID NO. 17, SEQ ID NO. 9 paired with SEQ
ID NO. 18, SEQ ID NO. 10 paired with SEQ ID NO. 11, SEQ ID NO. 10 paired with SEQ
ID NO. 12, SEQ ID NO. 10 paired with SEQ ID NO. 13, SEQ ID NO. 10 paired with SEQ
ID NO. 14, SEQ ID NO. 10 paired with SEQ ID NO. 15, SEQ ID NO. 10 paired with SEQ
ID NO. 16, SEQ ID NO. 10 paired with SEQ ID NO. 17, or SEQ ID NO. 10 paired with SEQ
ID NO. 18.
[0028] In some embodiments, the antibody competes with the antibody secreted by hybridoma
ATCC accession No. HB-12126 for binding to PSMA. In another aspect, the antibody competes
with the antibody secreted by hybridoma ATCC accession No. HB-12109 for binding to
PSMA. In one embodiment the antibody binds PSMA with an association constant (K
a) no less than 2, 5 or 10-fold less than the antibody secreted by the hybridoma.
[0029] In one aspect the antibody is the antibody secreted by a hydridoma. In one embodiment
the hybridoma is ATCC accession No. HB-12126. In another embodiment the hybridoma
is ATCC accession No. HB-12109.
[0030] In some embodiments the antibody is the J415 antibody disclosed in
WO02/098897.
[0031] In some embodiments the antibody is the J519 antibody disclosed in
WO02/098897.
[0032] In aspect the antibody is an antibody as described herein which has been modified
(or further modified) as described below. In some embodiments the antibody is a humanised,
deimmunised or resurfaced version of an antibody disclosed herein. For example, a
humanised, deimmunised or resurfaced version of (i) the antibody comprising the VH
domain SEQ ID NO. 1 paired with the VL domain SEQ ID NO. 2, (ii) the J519 antibody
disclosed in
WO02/098897, (iii) the antibody secreted by the hybridoma ATCC accession No. HB-12109, (iv) the
antibody comprising the VH domain SEQ ID NO. 5 paired with the VL domain SEQ ID NO.
6, (v) the J415 antibody disclosed in
WO02/098897, (vi) the antibody secreted by the hybridoma ATCC accession No. HB-12126.
Terminology
[0033] The term "antibody" herein is used in the broadest sense and specifically covers
monoclonal antibodies, polyclonal antibodies, dimers, multimers, multispecific antibodies
(
e.g., bispecific antibodies), intact antibodies and antibody fragments, so long as they
exhibit the desired biological activity, for example, the ability to bind PSMA (
Miller et al (2003) Jour. of Immunology 170:4854-4861). Antibodies may be murine, human, humanized, chimeric, or derived from other species.
An antibody is a protein generated by the immune system that is capable of recognizing
and binding to a specific antigen. (
Janeway, C., Travers, P., Walport, M., Shlomchik (2001) Immuno Biology, 5th Ed., Garland
Publishing, New York). A target antigen generally has numerous binding sites, also called epitopes, recognized
by CDRs on multiple antibodies. Each antibody that specifically binds to a different
epitope has a different structure. Thus, one antigen may have more than one corresponding
antibody. An antibody includes a full-length immunoglobulin molecule or an immunologically
active portion of a full-length immunoglobulin molecule,
i.e., a molecule that contains an antigen binding site that immunospecifically binds an
antigen of a target of interest or part thereof, such targets including cancer cell
or cells that produce autoimmune antibodies associated with an autoimmune disease.
The immunoglobulin can be of any type (e.g. IgG, IgE, IgM, IgD, and IgA), class (e.g.
IgG1, IgG2, IgG3, IgG4, IgA1 and IgA2) or subclass, or allotype (e.g. human G1m1,
G1m2, G1m3, non-G1m1 [that, is any allotype other than G1m1], G1m17, G2m23, G3m21,
G3m28, G3m11, G3m5, G3m13, G3m14, G3m10, G3m15, G3m16, G3m6, G3m24, G3m26, G3m27,
A2m1, A2m2, Km1, Km2 and Km3) of immunoglobulin molecule. The immunoglobulins can
be derived from any species, including human, murine, or rabbit origin.
[0034] As used herein, "binds PSMA" is used to mean the antibody binds PSMA with a higher
affinity than a non-specific partner such as Bovine Serum Albumin (BSA, Genbank accession
no. CAA76847, version no. CAA76847.1 GI:3336842, record update date: Jan 7, 2011 02:30
PM). In some embodiments the antibody binds PSMA with an association constant (K
a) at least 2, 3, 4, 5, 10, 20, 50, 100, 200, 500, 1000, 2000, 5000, 10
4, 10
5 or 10
6-fold higher than the antibody's association constant for BSA, when measured at physiological
conditions. The antibodies of the invention can bind PSMA with a high affinity.
[0035] For example, in some embodiments the antibody can bind PSMA with a K
D equal to or less than about 10
-6 M, such as 1 x 10
-6, 10
-7, 10
-8, 10
-9,10
-10, 10
-11, 10
-12, 10-
13 or 10
-14.
[0036] As used herein, PSMA refers to Prostate-Specific Membrane Antigen. In one embodiment,
PSMA polypeptide corresponds to Genbank accession no. AAA60209, version no. AAA60209.1
GI:190664, record update date: Jun 23, 2010 08:48 AM. In one embodiment, the nucleic
acid encoding PSMA polypeptide corresponds to Genbank accession no. M99487, version
no. M99487.1 GI:190663, record update date: Jun 23, 2010 08:48 AM.
[0037] "Antibody fragments" comprise a portion of a full length antibody, generally the
antigen binding or variable region thereof. Examples of antibody fragments include
Fab, Fab', F(ab')
2, and scFv fragments; diabodies; linear antibodies; fragments produced by a Fab expression
library, anti-idiotypic (anti-Id) antibodies, CDR (complementary determining region),
and epitope-binding fragments of any of the above which immunospecifically bind to
cancer cell antigens, viral antigens or microbial antigens, single-chain antibody
molecules; and multispecific antibodies formed from antibody fragments.
[0038] The term "monoclonal antibody" as used herein refers to an antibody obtained from
a population of substantially homogeneous antibodies, i.e. the individual antibodies
comprising the population are identical except for possible naturally occurring mutations
that may be present in minor amounts. Monoclonal antibodies are highly specific, being
directed against a single antigenic site. Furthermore, in contrast to polyclonal antibody
preparations which include different antibodies directed against different determinants
(epitopes), each monoclonal antibody is directed against a single determinant on the
antigen. In addition to their specificity, the monoclonal antibodies are advantageous
in that they may be synthesized uncontaminated by other antibodies. The modifier "monoclonal"
indicates the character of the antibody as being obtained from a substantially homogeneous
population of antibodies, and is not to be construed as requiring production of the
antibody by any particular method. For example, the monoclonal antibodies to be used
in accordance with the present invention may be made by the hybridoma method first
described by
Kohler et al (1975) Nature 256:495, or may be made by recombinant DNA methods (see,
US 4816567). The monoclonal antibodies may also be isolated from phage antibody libraries using
the techniques described in
Clackson et al (1991) Nature, 352:624-628;
Marks et al (1991) J. Mol. Biol., 222:581-597 or from transgenic mice carrying a fully human immunoglobulin system (
Lonberg (2008) Curr. Opinion 20(4):450-459).
[0039] The monoclonal antibodies herein specifically include "chimeric" antibodies in which
a portion of the heavy and/or light chain is identical with or homologous to corresponding
sequences in antibodies derived from a particular species or belonging to a particular
antibody class or subclass, while the remainder of the chain(s) is identical with
or homologous to corresponding sequences in antibodies derived from another species
or belonging to another antibody class or subclass, as well as fragments of such antibodies,
so long as they exhibit the desired biological activity (
US 4816567; and
Morrison et al (1984) Proc. Natl. Acad. Sci. USA, 81:6851-6855). Chimeric antibodies include "primatized" antibodies comprising variable domain
antigen-binding sequences derived from a non-human primate (e.g. Old World Monkey
or Ape) and human constant region sequences.
[0040] An "intact antibody" herein is one comprising VL and VH domains, as well as a light
chain constant domain (CL) and heavy chain constant domains, CH1, CH2 and CH3. The
constant domains may be native sequence constant domains (e.g. human native sequence
constant domains) or amino acid sequence variant thereof. The intact antibody may
have one or more "effector functions" which refer to those biological activities attributable
to the Fc region (a native sequence Fc region or amino acid sequence variant Fc region)
of an antibody. Examples of antibody effector functions include C1q binding; complement
dependent cytotoxicity; Fc receptor binding; antibody-dependent cell-mediated cytotoxicity
(ADCC); phagocytosis; and down regulation of cell surface receptors such as B cell
receptor and BCR.
[0041] Depending on the amino acid sequence of the constant domain of their heavy chains,
intact antibodies can be assigned to different "classes." There are five major classes
of intact antibodies: IgA, IgD, IgE, IgG, and IgM, and several of these may be further
divided into "subclasses" (isotypes),
e.g., IgG1, IgG2, IgG3, IgG4, IgA, and IgA2. The heavy-chain constant domains that correspond
to the different classes of antibodies are called α, δ, ε, γ, and µ, respectively.
The subunit structures and three-dimensional configurations of different classes of
immunoglobulins are well known.
Modification of antibodies
[0042] The antibodies disclosed herein may be modified. For example, tomake them less immunogenic
to a human subject. This may be achieved using any of a number of techniques familiar
to the person skilled in the art. Some of these techniques are described in more detail
below.
Humanisation
[0043] Techniques to reduce the
in vivo immunogenicity of a non-human antibody or antibody fragment include those termed
"humanisation".
[0044] A "humanized antibody" refers to a polypeptide comprising at least a portion of a
modified variable region of a human antibody wherein a portion of the variable region,
preferably a portion substantially less than the intact human variable domain, has
been substituted by the corresponding sequence from a non-human species and wherein
the modified variable region is linked to at least another part of another protein,
preferably the constant region of a human antibody. The expression "humanized antibodies"
includes human antibodies in which one or more complementarity determining region
("CDR") amino acid residues and/or one or more framework region ("FW" or "FR") amino
acid residues are substituted by amino acid residues from analogous sites in rodent
or other non-human antibodies. The expression "humanized antibody" also includes an
immunoglobulin amino acid sequence variant or fragment thereof that comprises an FR
having substantially the amino acid sequence of a human immunoglobulin and a CDR having
substantially the amino acid sequence of a non-human immunoglobulin.
[0045] "Humanized" forms of non-human (e.g., murine) antibodies are chimeric antibodies
that contain minimal sequence derived from non-human immunoglobulin. Or, looked at
another way, a humanized antibody is a human antibody that also contains selected
sequences from non-human (e.g. murine) antibodies in place of the human sequences.
A humanized antibody can include conservative amino acid substitutions or non-natural
residues from the same or different species that do not significantly alter its binding
and/or biologic activity. Such antibodies are chimeric antibodies that contain minimal
sequence derived from non-human immunoglobulins.
[0046] There are a range of humanisation techniques, including 'CDR grafting', 'guided selection',
'deimmunization', 'resurfacing' (also known as 'veneering'), 'composite antibodies',
'Human String Content Optimisation' and framework shuffling.
CDR grafting
[0047] In this technique, the humanized antibodies are human immunoglobulins (recipient
antibody) in which residues from a complementary-determining region (CDR) of the recipient
antibody are replaced by residues from a CDR of a non-human species (donor antibody)
such as mouse, rat, camel, bovine, goat, or rabbit having the desired properties (in
effect, the non-human CDRs are 'grafted' onto the human framework). In some instances,
framework region (FR) residues of the human immunoglobulin are replaced by corresponding
non-human residues (this may happen when, for example, a particular FR residue has
significant effect on antigen binding).
[0048] Furthermore, humanized antibodies can comprise residues that are found neither in
the recipient antibody nor in the imported CDR or framework sequences. These modifications
are made to further refine and maximize antibody performance. Thus, in general, a
humanized antibody will comprise all of at least one, and in one aspect two, variable
domains, in which all or all of the hypervariable loops correspond to those of a non-human
immunoglobulin and all or substantially all of the FR regions are those of a human
immunoglobulin sequence. The humanized antibody optionally also will comprise at least
a portion of an immunoglobulin constant region (Fc), or that of a human immunoglobulin.
Guided selection
[0049] The method consists of combining the V
H or V
L domain of a given non-human antibody specific for a particular epitope with a human
V
H or V
L library and specific human V domains are selected against the antigen of interest.
This selected human VH is then combined with a VL library to generate a completely
human VHxVL combination. The method is described in
Nature Biotechnology (N.Y.) 12, (1994) 899-903.
Composite antibodies
[0050] In this method, two or more segments of amino acid sequence from a human antibody
are combined within the final antibody molecule. They are constructed by combining
multiple human VH and VL sequence segments in combinations which limit or avoid human
T cell epitopes in the final composite antibody V regions. Where required, T cell
epitopes are limited or avoided by, exchanging V region segments contributing to or
encoding a T cell epitope with alternative segments which avoid T cell epitopes. This
method is described in
US 2008/0206239 A1.
Deimmunization
[0051] This method involves the removal of human (or other second species) T-cell epitopes
from the V regions of the therapeutic antibody (or other molecule). The therapeutic
antibodies V-region sequence is analysed for the presence of MHC class II- binding
motifs by, for example, comparison with databases of MHC-binding motifs (such as the
"motifs" database hosted at www.wehi.edu.au). Alternatively, MHC class II- binding
motifs may be identified using computational threading methods such as those devised
by
Altuvia et al. (J. Mol. Biol. 249 244-250 (1995)); in these methods, consecutive overlapping peptides from the V-region sequences
are testing for their binding energies to MHC class II proteins. This data can then
be combined with information on other sequence features which relate to successfully
presented peptides, such as amphipathicity, Rothbard motifs, and cleavage sites for
cathepsin B and other processing enzymes.
[0052] Once potential second species (e.g. human) T-cell epitopes have been identified,
they are eliminated by the alteration of one or more amino acids. The modified amino
acids are usually within the T-cell epitope itself, but may also be adjacent to the
epitope in terms of the primary or secondary structure of the protein (and therefore,
may not be adjacent in the primary structure). Most typically, the alteration is by
way of substitution but, in some circumstances amino acid addition or deletion will
be more appropriate.
[0053] All alterations can be accomplished by recombinant DNA technology, so that the final
molecule may be prepared by expression from a recombinant host using well established
methods such as Site Directed Mutagenesis. However, the use of protein chemistry or
any other means of molecular alteration is also possible.
Resurfacing
[0054] This method involves:
- (a) determining the conformational structure of the variable region of the non-human
(e.g. rodent) antibody (or fragment thereof) by constructing a three-dimensional model
of the non-human antibody variable region;
- (b) generating sequence alignments using relative accessibility distributions from
x-ray crystallographic structures of a sufficient number of non-human and human antibody
variable region heavy and light chains to give a set of heavy and light chain framework
positions wherein the alignment positions are identical in 98% of the sufficient number
of non-human antibody heavy and light chains;
- (c) defining for the non-human antibody to be humanized, a set of heavy and light
chain surface exposed amino acid residues using the set of framework positions generated
in step (b);
- (d) identifying from human antibody amino acid sequences a set of heavy and light
chain surface exposed amino acid residues that is most closely identical to the set
of surface exposed amino acid residues defined in step (c), wherein the heavy and
light chain from the human antibody are or are not naturally paired;
- (e) substituting, in the amino acid sequence of the non-human antibody to be humanized,
the set of heavy and light chain surface exposed amino acid residues defined in step
(c) with the set of heavy and light chain surface exposed amino acid residues identified
in step (d);
- (f) constructing a three-dimensional model of the variable region of the non-human
antibody resulting from the substituting specified in step (e);
- (g) identifying, by comparing the three-dimensional models constructed in steps (a)
and (f), any amino acid residues from the sets identified in steps (c) or (d), that
are within 5 Angstroms of any atom of any residue of the complementarity determining
regions of the non-human antibodt to be humanized; and
- (h) changing any residues identified in step (g) from the human to the original non-human
amino acid residue to thereby define a non-human antibody humanizing set of surface
exposed amino acid residues; with the proviso that step (a) need not be conducted
first, but must be conducted prior to step (g).
Superhumanization
[0055] The method compares the non-human sequence with the functional human germline gene
repertoire. Those human genes encoding canonical structures identical or closely related
to the non-human sequences are selected. Those selected human genes with highest homology
within the CDRs are chosen as FR donors. Finally, the non-human CDRs are grafted onto
these human FRs. This method is described in patent
WO 2005/079479 A2.
Human String Content Optimization
[0056] This method compares the non-human (e.g. mouse) sequence with the repertoire of human
germline genes and the differences are scored as Human String Content (HSC) that quantifies
a sequence at the level of potential MHC/T-cell epitopes. The target sequence is then
humanized by maximizing its HSC rather than using a global identity measure to generate
multiple diverse humanized variants (described in
Molecular Immunology, 44, (2007) 1986-1998).
Framework Shuffling
[0057] The CDRs of the non-human antibody are fused in-frame to cDNA pools encompassing
all known heavy and light chain human germline gene frameworks. Humanised antibodies
are then selected by e.g. panning of the phage displayed antibody library. This is
described in
Methods 36, 43-60 (2005).
Conjugates
[0058] The present invention provides a conjugate comprising a PBD compound connected to
the antibody via a Linker Unit.
[0059] The linkers of the ADC preferably prevent aggregation of ADC molecules and keep the
ADC freely soluble in aqueous media and in a monomeric state.
[0060] The linkers of the ADC are preferably stable extracellularly. Before transport or
delivery into a cell, the antibody-drug conjugate (ADC) is preferably stable and remains
intact, i.e. the antibody remains linked to the drug moiety. The linkers are stable
outside the target cell and may be cleaved at some efficacious rate inside the cell.
An effective linker will: (i) maintain the specific binding properties of the antibody;
(ii) allow intracellular delivery of the conjugate or drug moiety; (iii) remain stable
and intact, i.e. not cleaved, until the conjugate has been delivered or transported
to its targetted site; and (iv) maintain a cytotoxic, cell-killing effect or a cytostatic
effect of the PBD drug moiety. Stability of the ADC may be measured by standard analytical
techniques such as mass spectroscopy, HPLC, and the separation/analysis technique
LC/MS.
Embodiments
[0061] Embodiments of the present invention include ConjA wherein the antibody is as defined
above.
[0062] Embodiments of the present invention include ConjB wherein the antibody is as defined
above.
[0063] Embodiments of the present invention include ConjC wherein the antibody is as defined
above.
[0064] Embodiments of the present invention include ConjD wherein the antibody is as defined
above.
[0065] Embodiments of the present invention include ConjE wherein the antibody is as defined
above.
Drug loading
[0066] The drug loading is the average number of PBD drugs per antibody, e.g. antibody.
Where the compounds of the invention are bound to cysteines, drug loading may range
from 1 to 8 drugs (D
L) per antibody, i.e. where 1, 2, 3, 4, 5, 6, 7, and 8 drug moieties are covalently
attached to the antibody. Compositions of conjgates include collections of antibodies,
conjugated with a range of drugs, from 1 to 8.
[0067] The average number of drugs per antibody in preparations of ADC from conjugation
reactions may be characterized by conventional means such as UV, reverse phase HPLC,
HIC, mass spectroscopy, ELISA assay, and electrophoresis. The quantitative distribution
of ADC in terms of p may also be determined. By ELISA, the averaged value of p in
a particular preparation of ADC may be determined (
Hamblett et al (2004) Clin. Cancer Res. 10:7063-7070;
Sanderson et al (2005) Clin. Cancer Res. 11:843-852). However, the distribution of p (drug) values is not discernible by the antibody-antigen
binding and detection limitation of ELISA. Also, ELISA assay for detection of antibody-drug
conjugates does not determine where the drug moieties are attached to the antibody,
such as the heavy chain or light chain fragments, or the particular amino acid residues.
In some instances, separation, purification, and characterization of homogeneous ADC
where p is a certain value from ADC with other drug loadings may be achieved by means
such as reverse phase HPLC or electrophoresis. Such techniques are also applicable
to other types of conjugates.
[0068] For some antibody-drug conjugates, p may be limited by the number of attachment sites
on the antibody. For example, an antibody may have only one or several cysteine thiol
groups, or may have only one or several sufficiently reactive thiol groups through
which a linker may be attached. Higher drug loading, e.g. p >5, may cause aggregation,
insolubility, toxicity, or loss of cellular permeability of certain antibody-drug
conjugates.
[0069] Typically, fewer than the theoretical maximum of drug moieties are conjugated to
an antibody during a conjugation reaction. An antibody may contain, for example, many
lysine residues that do not react with the drug-linker intermediate (D-L) or linker
reagent. Only the most reactive lysine groups may react with an amine-reactive linker
reagent. Also, only the most reactive cysteine thiol groups may react with a thiol-reactive
linker reagent. Generally, antibodies do not contain many, if any, free and reactive
cysteine thiol groups which may be linked to a drug moiety. Most cysteine thiol residues
in the antibodies of the compounds exist as disulfide bridges and must be reduced
with a reducing agent such as dithiothreitol (DTT) or TCEP, under partial or total
reducing conditions. The loading (drug/antibody ratio) of an ADC may be controlled
in several different manners, including: (i) limiting the molar excess of drug-linker
intermediate (D-L) or linker reagent relative to antibody, (ii) limiting the conjugation
reaction time or temperature, and (iii) partial or limiting reductive conditions for
cysteine thiol modification.
[0070] Certain antibodies have reducible interchain disulfides, i.e. cysteine bridges. Antibodies
may be made reactive for conjugation with linker reagents by treatment with a reducing
agent such as DTT (dithiothreitol). Each cysteine bridge will thus form, theoretically,
two reactive thiol nucleophiles. Additional nucleophilic groups can be introduced
into antibodies through the reaction of lysines with 2-iminothiolane (Traut's reagent)
resulting in conversion of an amine into a thiol. Reactive thiol groups may be introduced
into the antibody (or fragment thereof) by engineering one, two, three, four, or more
cysteine residues (e.g., preparing mutant antibodies comprising one or more non-native
cysteine amino acid residues).
US 7521541 teaches engineering antibodies by introduction of reactive cysteine amino acids.
[0071] Cysteine amino acids may be engineered at reactive sites in an antibody and which
do not form intrachain or intermolecular disulfide linkages (
Junutula, et al., 2008b Nature Biotech., 26(8):925-932;
Dornan et al (2009) Blood 114(13):2721-2729;
US 7521541;
US 7723485;
WO2009/052249). The engineered cysteine thiols may react with linker reagents or the drug-linker
reagents of the present invention which have thiol-reactive, electrophilic groups
such as maleimide or alpha-halo amides to form ADC with cysteine engineered antibodies
and the PBD drug moieties. The location of the drug moiety can thus be designed, controlled,
and known. The drug loading can be controlled since the engineered cysteine thiol
groups typically react with thiol-reactive linker reagents or drug-linker reagents
in high yield. Engineering an IgG antibody to introduce a cysteine amino acid by substitution
at a single site on the heavy or light chain gives two new cysteines on the symmetrical
antibody. A drug loading near 2 can be achieved with near homogeneity of the conjugation
product ADC.
[0072] Alternatively, site-specific conjugation can be achieved by engineering antibodies
to contain unnatural amino acids in their heavy and/or light chains as described by
Axup et al. ((2012), Proc Natl Acad Sci U S A. 109(40):16101-16116). The unnatural amino acids provide the additional advantage that orthogonal chemistry
can be designed to attach the linker reagent and drug.
[0073] Where more than one nucleophilic or electrophilic group of the antibody reacts with
a drug-linker intermediate, or linker reagent followed by drug moiety reagent, then
the resulting product is a mixture of ADC compounds with a distribution of drug moieties
attached to an antibody, e.g. 1, 2, 3, etc. Liquid chromatography methods such as
polymeric reverse phase (PLRP) and hydrophobic interaction (HIC) may separate compounds
in the mixture by drug loading value. Preparations of ADC with a single drug loading
value (p) may be isolated, however, these single loading value ADCs may still be heterogeneous
mixtures because the drug moieties may be attached, via the linker, at different sites
on the antibody.
[0074] Thus the antibody-drug conjugate compositions of the invention include mixtures of
antibody-drug conjugate compounds where the antibody has one or more PBD drug moieties
and where the drug moieties may be attached to the antibody at various amino acid
residues.
[0075] In one embodiment, the average number of dimer pyrrolobenzodiazepine groups per antibody
is in the range selected from 1 to 8, 2 to 8, 2 to 6, 2 to 4, and 4 to 8.
[0076] In some embodiments, there is one dimer pyrrolobenzodiazepine group per antibody.
Includes Other Forms
[0077] Unless otherwise specified, included in the above are the well known ionic, salt,
solvate, and protected forms of these substituents. For example, a reference to carboxylic
acid (-COOH) also includes the anionic (carboxylate) form (-COO
-), a salt or solvate thereof, as well as conventional protected forms. Similarly,
a reference to an amino group includes the protonated form (-N
+HR
1R
2), a salt or solvate of the amino group, for example, a hydrochloride salt, as well
as conventional protected forms of an amino group. Similarly, a reference to a hydroxyl
group also includes the anionic form (-O
-), a salt or solvate thereof, as well as conventional protected forms.
Salts
[0078] It may be convenient or desirable to prepare, purify, and/or handle a corresponding
salt of the active compound, for example, a pharmaceutically-acceptable salt. Examples
of pharmaceutically acceptable salts are discussed in
Berge, et al., J. Pharm. Sci., 66, 1-19 (1977).
[0079] For example, if the compound is anionic, or has a functional group which may be anionic
(e.g. -COOH may be -COO
-), then a salt may be formed with a suitable cation. Examples of suitable inorganic
cations include, but are not limited to, alkali metal ions such as Na
+ and K
+, alkaline earth cations such as Ca
2+ and Mg
2+, and other cations such as Al
+3. Examples of suitable organic cations include, but are not limited to, ammonium ion
(i.e. NH
4+) and substituted ammonium ions (e.g. NH
3R
+, NH
2R
2+, NHR
3+, NR
4+). Examples of some suitable substituted ammonium ions are those derived from: ethylamine,
diethylamine, dicyclohexylamine, triethylamine, butylamine, ethylenediamine, ethanolamine,
diethanolamine, piperazine, benzylamine, phenylbenzylamine, choline, meglumine, and
tromethamine, as well as amino acids, such as lysine and arginine. An example of a
common quaternary ammonium ion is N(CH
3)
4+.
[0080] If the compound is cationic, or has a functional group which may be cationic (e.g.
-NH
2 may be -NH
3+), then a salt may be formed with a suitable anion. Examples of suitable inorganic
anions include, but are not limited to, those derived from the following inorganic
acids: hydrochloric, hydrobromic, hydroiodic, sulfuric, sulfurous, nitric, nitrous,
phosphoric, and phosphorous.
[0081] Examples of suitable organic anions include, but are not limited to, those derived
from the following organic acids: 2-acetyoxybenzoic, acetic, ascorbic, aspartic, benzoic,
camphorsulfonic, cinnamic, citric, edetic, ethanedisulfonic, ethanesulfonic, fumaric,
glucheptonic, gluconic, glutamic, glycolic, hydroxymaleic, hydroxynaphthalene carboxylic,
isethionic, lactic, lactobionic, lauric, maleic, malic, methanesulfonic, mucic, oleic,
oxalic, palmitic, pamoic, pantothenic, phenylacetic, phenylsulfonic, propionic, pyruvic,
salicylic, stearic, succinic, sulfanilic, tartaric, toluenesulfonic, trifluoroacetic
acid and valeric. Examples of suitable polymeric organic anions include, but are not
limited to, those derived from the following polymeric acids: tannic acid, carboxymethyl
cellulose.
Solvates
[0082] It may be convenient or desirable to prepare, purify, and/or handle a corresponding
solvate of the active compound. The term "solvate" is used herein in the conventional
sense to refer to a complex of solute (e.g. active compound, salt of active compound)
and solvent. If the solvent is water, the solvate may be conveniently referred to
as a hydrate, for example, a mono-hydrate, a di-hydrate, a tri-hydrate, etc.
[0083] The invention includes compounds where a solvent adds across the imine bond of the
PBD moiety, which is illustrated below where the solvent is water or an alcohol (R
AOH, where R
A is C
1-4 alkyl):

These forms can be called the carbinolamine and carbinolamine ether forms of the PBD
(as described in the section relating to R
10 above). The balance of these equilibria depend on the conditions in which the compounds
are found, as well as the nature of the moiety itself.
[0084] These particular compounds may be isolated in solid form, for example, by lyophilisation.
Isomers
[0085] Certain compounds of the invention may exist in one or more particular geometric,
optical, enantiomeric, diasteriomeric, epimeric, atropic, stereoisomeric, tautomeric,
conformational, or anomeric forms, including cis- and trans-forms; E- and Z-forms;
c-, t-, and r- forms; endo- and exo-forms; R-, S-, and meso-forms; D- and L-forms;
d- and I-forms; (+) and (-) forms; keto-, enol-, and enolate-forms; syn- and anti-forms;
synclinal- and anticlinal-forms; α- and β-forms; axial and equatorial forms; boat-,
chair-, twist-, envelope-, and halfchair-forms; and combinations thereof, hereinafter
collectively referred to as "isomers" (or "isomeric forms").
[0086] The term "chiral" refers to molecules which have the property of non-superimposability
of the mirror image partner, while the term "achiral" refers to molecules which are
superimposable on their mirror image partner.
[0087] The term "stereoisomers" refers to compounds which have identical chemical constitution,
but differ with regard to the arrangement of the atoms or groups in space.
[0088] "Diastereomer" refers to a stereoisomer with two or more centers of chirality and
whose molecules are not mirror images of one another. Diastereomers have different
physical properties, e.g. melting points, boiling points, spectral properties, and
reactivities. Mixtures of diastereomers may separate under high resolution analytical
procedures such as electrophoresis and chromatography.
[0089] "Enantiomers" refer to two stereoisomers of a compound which are non-superimposable
mirror images of one another.
[0090] Stereochemical definitions and conventions used herein generally follow
S. P. Parker, Ed., McGraw-Hill Dictionary of Chemical Terms (1984) McGraw-Hill Book
Company, New York; and
Eliel, E. and Wilen, S., "Stereochemistry of Organic Compounds", John Wiley & Sons,
Inc., New York, 1994. The compounds of the invention may contain asymmetric or chiral centers, and therefore
exist in different stereoisomeric forms. It is intended that all stereoisomeric forms
of the compounds of the invention, including diastereomers, enantiomers and atropisomers,
as well as mixtures thereof such as racemic mixtures, form part of the present invention.
Many organic compounds exist in optically active forms, i.e., they have the ability
to rotate the plane of plane-polarized light. In describing an optically active compound,
the prefixes D and L, or
R and
S, are used to denote the absolute configuration of the molecule about its chiral center(s).
The prefixes d and I or (+) and (-) are employed to designate the sign of rotation
of plane-polarized light by the compound, with (-) or I meaning that the compound
is levorotatory. A compound prefixed with (+) or d is dextrorotatory. For a given
chemical structure, these stereoisomers are identical except that they are mirror
images of one another. A specific stereoisomer may also be referred to as an enantiomer,
and a mixture of such isomers is often called an enantiomeric mixture. A 50:50 mixture
of enantiomers is referred to as a racemic mixture or a racemate, which may occur
where there has been no stereoselection or stereospecificity in a chemical reaction
or process. The terms "racemic mixture" and "racemate" refer to an equimolar mixture
of two enantiomeric species, devoid of optical activity.
[0091] Note that, except as discussed below for tautomeric forms, specifically excluded
from the term "isomers", as used herein, are structural (or constitutional) isomers
(i.e. isomers which differ in the connections between atoms rather than merely by
the position of atoms in space). For example, a reference to a methoxy group, -OCH
3, is not to be construed as a reference to its structural isomer, a hydroxymethyl
group, -CH
2OH. Similarly, a reference to ortho-chlorophenyl is not to be construed as a reference
to its structural isomer, meta-chlorophenyl. However, a reference to a class of structures
may well include structurally isomeric forms falling within that class (e.g. C
1-7 alkyl includes n-propyl and iso-propyl; butyl includes n-, iso-, sec-, and tert-butyl;
methoxyphenyl includes ortho-, meta-, and para-methoxyphenyl).
[0092] The above exclusion does not pertain to tautomeric forms, for example, keto-, enol-,
and enolate-forms, as in, for example, the following tautomeric pairs: keto/enol (illustrated
below), imine/enamine, amide/imino alcohol, amidine/amidine, nitroso/oxime, thioketone/enethiol,
N-nitroso/hyroxyazo, and nitro/aci-nitro.

[0093] The term "tautomer" or "tautomeric form" refers to structural isomers of different
energies which are interconvertible via a low energy barrier. For example, proton
tautomers (also known as prototropic tautomers) include interconversions via migration
of a proton, such as keto-enol and imine-enamine isomerizations. Valence tautomers
include interconversions by reorganization of some of the bonding electrons.
[0094] Note that specifically included in the term "isomer" are compounds with one or more
isotopic substitutions. For example, H may be in any isotopic form, including
1H,
2H (D), and
3H (T); C may be in any isotopic form, including
12C,
13C, and
14C; O may be in any isotopic form, including
16O and
18O
[0095] Examples of isotopes that can be incorporated into compounds of the invention include
isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine, and chlorine,
such as
2H (deuterium, D),
3H (tritium),
11C,
13C,
14C,
15N,
18F,
31P,
32P,
35S,
36Cl, and
125I. Various isotopically labeled compounds of the present invention, for example those
into which radioactive isotopes such as 3H, 13C, and 14C are incorporated. Such isotopically
labelled compounds may be useful in metabolic studies, reaction kinetic studies, detection
or imaging techniques, such as positron emission tomography (PET) or single-photon
emission computed tomography (SPECT) including drug or substrate tissue distribution
assays, or in radioactive treatment of patients. Deuterium labelled or substituted
therapeutic compounds of the invention may have improved DMPK (drug metabolism and
pharmacokinetics) properties, relating to distribution, metabolism, and excretion
(ADME). Substitution with heavier isotopes such as deuterium may afford certain therapeutic
advantages resulting from greater metabolic stability, for example increased in vivo
half-life or reduced dosage requirements. An 18F labeled compound may be useful for
PET or SPECT studies. Isotopically labeled compounds of this invention and prodrugs
thereof can generally be prepared by carrying out the procedures disclosed in the
schemes or in the examples and preparations described below by substituting a readily
available isotopically labeled reagent for a non-isotopically labeled reagent. Further,
substitution with heavier isotopes, particularly deuterium (i.e., 2H or D) may afford
certain therapeutic advantages resulting from greater metabolic stability, for example
increased in vivo half-life or reduced dosage requirements or an improvement in therapeutic
index. It is understood that deuterium in this context is regarded as a substituent.
The concentration of such a heavier isotope, specifically deuterium, may be defined
by an isotopic enrichment factor. In the compounds of this invention any atom not
specifically designated as a particular isotope is meant to represent any stable isotope
of that atom.
[0096] Unless otherwise specified, a reference to a particular compound includes all such
isomeric forms, including (wholly or partially) racemic and other mixtures thereof.
Methods for the preparation (e.g. asymmetric synthesis) and separation (e.g. fractional
crystallisation and chromatographic means) of such isomeric forms are either known
in the art or are readily obtained by adapting the methods taught herein, or known
methods, in a known manner.
Biological Activity
In vitro cell proliferation assays
[0097] Generally, the cytotoxic or cytostatic activity of an antibody-drug conjugate (ADC)
is measured by: exposing mammalian cells having receptor proteins to the antibody
of the ADC in a cell culture medium; culturing the cells for a period from about 6
hours to about 5 days; and measuring cell viability. Cell-based
in vitro assays are used to measure viability (proliferation), cytotoxicity, and induction
of apoptosis (caspase activation) of an ADC of the invention.
[0098] The
in vitro potency of antibody-drug conjugates can be measured by a cell proliferation assay.
The CellTiter-Glo® Luminescent Cell Viability Assay is a commercially available (Promega
Corp., Madison, WI), homogeneous assay method based on the recombinant expression
of
Coleoptera luciferase (
US Patent Nos. 5583024;
5674713 and
5700670). This cell proliferation assay determines the number of viable cells in culture
based on quantitation of the ATP present, an indicator of metabolically active cells
(
Crouch et al (1993) J. Immunol. Meth. 160:81-88;
US 6602677). The CellTiter-Glo® Assay is conducted in 96 well format, making it amenable to
automated high-throughput screening (HTS) (
Cree et al (1995) AntiCancer Drugs 6:398-404). The homogeneous assay procedure involves adding the single reagent (CellTiter-Glo®
Reagent) directly to cells cultured in serum-supplemented medium. Cell washing, removal
of medium and multiple pipetting steps are not required. The system detects as few
as 15 cells/well in a 384-well format in 10 minutes after adding reagent and mixing.
The cells may be treated continuously with ADC, or they may be treated and separated
from ADC. Generally, cells treated briefly, i.e. 3 hours, showed the same potency
effects as continuously treated cells.
[0099] The homogeneous "add-mix-measure" format results in cell lysis and generation of
a luminescent signal proportional to the amount of ATP present. The amount of ATP
is directly proportional to the number of cells present in culture. The CellTiter-Glo®
Assay generates a "glow-type" luminescent signal, produced by the luciferase reaction,
which has a half-life generally greater than five hours, depending on cell type and
medium used. Viable cells are reflected in relative luminescence units (RLU). The
substrate, Beetle Luciferin, is oxidatively decarboxylated by recombinant firefly
luciferase with concomitant conversion of ATP to AMP and generation of photons.
[0100] The
in vitro potency of antibody-drug conjugates can also be measured by a cytotoxicity assay.
Cultured adherent cells are washed with PBS, detached with trypsin, diluted in complete
medium, containing 10% FCS, centrifuged, re-suspended in fresh medium and counted
with a haemocytometer. Suspension cultures are counted directly. Monodisperse cell
suspensions suitable for counting may require agitation of the suspension by repeated
aspiration to break up cell clumps.
[0101] The cell suspension is diluted to the desired seeding density and dispensed (100µl
per well) into black 96 well plates. Plates of adherent cell lines are incubated overnight
to allow adherence. Suspension cell cultures can be used on the day of seeding.
[0102] A stock solution (1ml) of ADC (20µg/ml) is made in the appropriate cell culture medium.
Serial 10-fold dilutions of stock ADC are made in 15ml centrifuge tubes by serially
transferring 100µl to 900µl of cell culture medium.
[0103] Four replicate wells of each ADC dilution (100µl) are dispensed in 96-well black
plates, previously plated with cell suspension (100µl), resulting in a final volume
of 200 µl. Control wells receive cell culture medium (100µl).
[0104] If the doubling time of the cell line is greater than 30 hours, ADC incubation is
for 5 days, otherwise a four day incubation is done.
[0105] At the end of the incubation period, cell viability is assessed with the Alamar blue
assay. AlamarBlue (Invitrogen) is dispensed over the whole plate (20µl per well) and
incubated for 4 hours. Alamar blue fluorescence is measured at excitation 570nm, emission
585nm on the Varioskan flash plate reader. Percentage cell survival is calculated
from the mean fluorescence in the ADC treated wells compared to the mean fluorescence
in the control wells.
Use
[0106] The conjugates of the invention may be used to provide a PBD compound at a target
location.
[0107] The target location is preferably a proliferative cell population. The antibody is
an antibody for an antigen present on a proliferative cell population.
[0108] In one embodiment the antigen is absent or present at a reduced level in a non-proliferative
cell population compared to the amount of antigen present in the proliferative cell
population, for example a tumour cell population.
[0109] At the target location the linker may be cleaved so as to release a compound RelA,
RelB, RelC, RelD or RelE. Thus, the conjugate may be used to selectively provide a
compound RelA, RelB, Rel C, RelD or RelE to the target location.
[0110] The linker may be cleaved by an enzyme present at the target location.
[0111] The target location may be
in vitro, in vivo or
ex vivo.
[0112] The antibody-drug conjugate (ADC) compounds of the invention include those with utility
for anticancer activity. In particular, the compounds include an antibody conjugated,
i.e. covalently attached by a linker, to a PBD drug moiety, i.e. toxin. When the drug
is not conjugated to an antibody, the PBD drug has a cytotoxic effect. The biological
activity of the PBD drug moiety is thus modulated by conjugation to an antibody. The
antibody-drug conjugates (ADC) of the invention selectively deliver an effective dose
of a cytotoxic agent to tumor tissue whereby greater selectivity, i.e. a lower efficacious
dose, may be achieved.
[0113] Thus, in one aspect, the present invention provides a conjugate compound as described
herein for use in therapy.
[0114] In a further aspect there is also provides a conjugate compound as described herein
for use in the treatment of a proliferative disease. A second aspect of the present
invention provides the use of a conjugate compound in the manufacture of a medicament
for treating a proliferative disease.
[0115] One of ordinary skill in the art is readily able to determine whether or not a candidate
conjugate treats a proliferative condition for any particular cell type. For example,
assays which may conveniently be used to assess the activity offered by a particular
compound are described in the examples below.
[0116] The term "proliferative disease" pertains to an unwanted or uncontrolled cellular
proliferation of excessive or abnormal cells which is undesired, such as, neoplastic
or hyperplastic growth, whether
in vitro or
in vivo.
[0117] Examples of proliferative conditions include, but are not limited to, benign, pre-malignant,
and malignant cellular proliferation, including neoplasms and tumours (e.g. histocytoma,
glioma, astrocyoma, osteoma), cancers (e.g. lung cancer, small cell lung cancer, gastrointestinal
cancer, bowel cancer, colon cancer, breast carinoma, ovarian carcinoma, prostate cancer,
testicular cancer, liver cancer, kidney cancer, bladder cancer, pancreas cancer, brain
cancer, sarcoma, osteosarcoma, Kaposi's sarcoma, melanoma), lymphomas, leukemias,
psoriasis, bone diseases, fibroproliferative disorders (e.g. of connective tissues),
and atherosclerosis. Cancers of particular interest include, but are not limited to,
leukemias and ovarian cancers.
[0118] Any type of cell may be treated, including lung, gastrointestinal (including, e.g.
bowel, colon), breast (mammary), ovarian, prostate, liver (hepatic), kidney (renal),
bladder, pancreas, brain, and skin.
[0119] Cancers of particular interest include, but are not limited to, prostate cancers.
[0120] PSMA has also shown to be widely expressed in the neovasculature of non-prostate
solid tumors including carcinomas of the colon, breast, bladder, pancreas, kidney
and melanoma, but not normal vasculature. Thus, a PSMA specific ADC can be used for
the treatment of non-prostate tumors with PSMA positive neovasculature.
[0121] It is contemplated that the antibody-drug conjugates (ADC) of the present invention
may be used to treat various diseases or disorders, e.g. characterized by the overexpression
of a tumor antigen. Exemplary conditions or hyperproliferative disorders include benign
or malignant tumors; leukemia, haematological, and lymphoid malignancies. Others include
neuronal, glial, astrocytal, hypothalamic, glandular, macrophagal, epithelial, stromal,
blastocoelic, inflammatory, angiogenic and immunologic, including autoimmune, disorders.
[0122] Generally, the disease or disorder to be treated is a hyperproliferative disease
such as cancer. Examples of cancer to be treated herein include, but are not limited
to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia or lymphoid malignancies.
More particular examples of such cancers include squamous cell cancer (e.g. epithelial
squamous cell cancer), lung cancer including small-cell lung cancer, non-small cell
lung cancer, adenocarcinoma of the lung and squamous carcinoma of the lung, cancer
of the peritoneum, hepatocellular cancer, gastric or stomach cancer including gastrointestinal
cancer, pancreatic cancer, glioblastoma, cervical cancer, ovarian cancer, liver cancer,
bladder cancer, hepatoma, breast cancer, colon cancer, rectal cancer, colorectal cancer,
endometrial or uterine carcinoma, salivary gland carcinoma, kidney or renal cancer,
prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma, anal carcinoma,
penile carcinoma, as well as head and neck cancer.
[0123] Autoimmune diseases for which the ADC compounds may be used in treatment include
rheumatologic disorders (such as, for example, rheumatoid arthritis, Sjögren's syndrome,
scleroderma, lupus such as SLE and lupus nephritis, polymyositis/dermatomyositis,
cryoglobulinemia, anti-phospholipid antibody syndrome, and psoriatic arthritis), osteoarthritis,
autoimmune gastrointestinal and liver disorders (such as, for example, inflammatory
bowel diseases (e.g. ulcerative colitis and Crohn's disease), autoimmune gastritis
and pernicious anemia, autoimmune hepatitis, primary biliary cirrhosis, primary sclerosing
cholangitis, and celiac disease), vasculitis (such as, for example, ANCA-associated
vasculitis, including Churg-Strauss vasculitis, Wegener's granulomatosis, and polyarteriitis),
autoimmune neurological disorders (such as, for example, multiple sclerosis, opsoclonus
myoclonus syndrome, myasthenia gravis, neuromyelitis optica, Parkinson's disease,
Alzheimer's disease, and autoimmune polyneuropathies), renal disorders (such as, for
example, glomerulonephritis, Goodpasture's syndrome, and Berger's disease), autoimmune
dermatologic disorders (such as, for example, psoriasis, urticaria, hives, pemphigus
vulgaris, bullous pemphigoid, and cutaneous lupus erythematosus), hematologic disorders
(such as, for example, thrombocytopenic purpura, thrombotic thrombocytopenic purpura,
post-transfusion purpura, and autoimmune hemolytic anemia), atherosclerosis, uveitis,
autoimmune hearing diseases (such as, for example, inner ear disease and hearing loss),
Behcet's disease, Raynaud's syndrome, organ transplant, and autoimmune endocrine disorders
(such as, for example, diabetic-related autoimmune diseases such as insulin-dependent
diabetes mellitus (IDDM), Addison's disease, and autoimmune thyroid disease (e.g.
Graves' disease and thyroiditis)). More preferred such diseases include, for example,
rheumatoid arthritis, ulcerative colitis, ANCA-associated vasculitis, lupus, multiple
sclerosis, Sjögren's syndrome, Graves' disease, IDDM, pernicious anemia, thyroiditis,
and glomerulonephritis.
Methods of Treatment
[0124] The conjugates of the present invention may be used in a method of therapy.
[0125] The actual amount administered, and rate and time-course of administration, will
depend on the nature and severity of what is being treated. Prescription of treatment,
e.g. decisions on dosage, is within the responsibility of general practitioners and
other medical doctors.
[0126] A compound of the invention may be administered alone or in combination with other
treatments, either simultaneously or sequentially dependent upon the condition to
be treated. Examples of treatments and therapies include, but are not limited to,
chemotherapy (the administration of active agents, including, e.g. drugs, such as
chemotherapeutics); surgery; and radiation therapy.
[0127] A "chemotherapeutic agent" is a chemical compound useful in the treatment of cancer,
regardless of mechanism of action. Classes of chemotherapeutic agents include, but
are not limited to: alkylating agents, antimetabolites, spindle poison plant alkaloids,
cytotoxic/antitumor antibiotics, topoisomerase inhibitors, antibodies, photosensitizers,
and kinase inhibitors. Chemotherapeutic agents include compounds used in "targeted
therapy" and conventional chemotherapy.
[0128] Examples of chemotherapeutic agents include: erlotinib (TARCEVA®, Genentech/OSI Pharm.),
docetaxel (TAXOTERE®, Sanofi-Aventis), 5-FU (fluorouracil, 5-fluorouracil,
CAS No. 51-21-8), gemcitabine (GEMZAR®, Lilly), PD-0325901 (
CAS No. 391210-10-9, Pfizer), cisplatin (cis-diamine, dichloroplatinum(II),
CAS No. 15663-27-1), carboplatin (
CAS No. 41575-94-4), paclitaxel (TAXOL®, Bristol-Myers Squibb Oncology, Princeton, N.J.), trastuzumab
(HERCEPTIN®, Genentech), temozolomide (4-methyl-5-oxo- 2,3,4,6,8-pentazabicyclo [4.3.0]
nona-2,7,9-triene- 9-carboxamide,
CAS No. 85622-93-1, TEMODAR®, TEMODAL®, Schering Plough), tamoxifen ((Z)-2-[4-(1,2-diphenylbut-1-enyl)phenoxy]-
N,
N-dimethylethanamine, NOLVADEX®, ISTUBAL®, VALODEX®), and doxorubicin (ADRIAMYCIN®),
Akti-1/2, HPPD, and rapamycin.
More examples of chemotherapeutic agents include: oxaliplatin (ELOXATIN®, Sanofi),
bortezomib (VELCADE®, Millennium Pharm.), sutent (SUNITINIB®, SU11248, Pfizer), letrozole
(FEMARA®, Novartis), imatinib mesylate (GLEEVEC®, Novartis), XL-518 (Mek inhibitor,
Exelixis,
WO 2007/044515), ARRY-886 (Mek inhibitor, AZD6244, Array BioPharma, Astra Zeneca), SF-1126 (PI3K
inhibitor, Semafore Pharmaceuticals), BEZ-235 (PI3K inhibitor, Novartis), XL-147 (PI3K
inhibitor, Exelixis), PTK787/ZK 222584 (Novartis), fulvestrant (FASLODEX®, AstraZeneca),
leucovorin (folinic acid), rapamycin (sirolimus, RAPAMUNE®, Wyeth), lapatinib (TYKERB®,
GSK572016, Glaxo Smith Kline), lonafarnib (SARASAR™, SCH 66336, Schering Plough),
sorafenib (NEXAVAR®, BAY43-9006, Bayer Labs), gefitinib (IRESSA®, AstraZeneca), irinotecan
(CAMPTOSAR®, CPT-11, Pfizer), tipifarnib (ZARNESTRA™, Johnson & Johnson), ABRAXANE™
(Cremophor-free), albumin-engineered nanoparticle formulations of paclitaxel (American
Pharmaceutical Partners, Schaumberg, II), vandetanib (rINN, ZD6474, ZACTIMA®, AstraZeneca),
chloranmbucil, AG1478, AG1571 (SU 5271; Sugen), temsirolimus (TORISEL®, Wyeth), pazopanib
(GlaxoSmithKline), canfosfamide (TELCYTA®, Telik), thiotepa and cyclosphosphamide
(CYTOXAN®, NEOSAR®); alkyl sulfonates such as busulfan, improsulfan and piposulfan;
aziridines such as benzodopa, carboquone, meturedopa, and uredopa; ethylenimines and
methylamelamines including altretamine, triethylenemelamine, triethylenephosphoramide,
triethylenethiophosphoramide and trimethylomelamine; acetogenins (especially bullatacin
and bullatacinone); a camptothecin (including the synthetic analog topotecan); bryostatin;
callystatin; CC-1065 (including its adozelesin, carzelesin and bizelesin synthetic
analogs); cryptophycins (particularly cryptophycin 1 and cryptophycin 8); dolastatin;
duocarmycin (including the synthetic analogs, KW-2189 and CB1-TM1); eleutherobin;
pancratistatin; a sarcodictyin; spongistatin; nitrogen mustards such as chlorambucil,
chlornaphazine, chlorophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine
oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide,
uracil mustard; nitrosoureas such as carmustine, chlorozotocin, fotemustine, lomustine,
nimustine, and ranimnustine; antibiotics such as the enediyne antibiotics (e.g. calicheamicin,
calicheamicin gamma1l, calicheamicin omegal1 (
Angew Chem. Intl. Ed. Engl. (1994) 33:183-186); dynemicin, dynemicin A; bisphosphonates, such as clodronate; an esperamicin; as
well as neocarzinostatin chromophore and related chromoprotein enediyne antibiotic
chromophores), aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin,
carabicin, carminomycin, carzinophilin, chromomycinis, dactinomycin, daunorubicin,
detorubicin, 6-diazo-5-oxo-L-norleucine, morpholino-doxorubicin, cyanomorpholino-doxorubicin,
2-pyrrolino-doxorubicin and deoxydoxorubicin), epirubicin, esorubicin, idarubicin,
nemorubicin, marcellomycin, mitomycins such as mitomycin C, mycophenolic acid, nogalamycin,
olivomycins, peplomycin, porfiromycin, puromycin, quelamycin, rodorubicin, streptonigrin,
streptozocin, tubercidin, ubenimex, zinostatin, zorubicin; anti-metabolites such as
methotrexate and 5-fluorouracil (5-FU); folic acid analogs such as denopterin, methotrexate,
pteropterin, trimetrexate; purine analogs such as fludarabine, 6-mercaptopurine, thiamiprine,
thioguanine; pyrimidine analogs such as ancitabine, azacitidine, 6-azauridine, carmofur,
cytarabine, dideoxyuridine, doxifluridine, enocitabine, floxuridine; androgens such
as calusterone, dromostanolone propionate, epitiostanol, mepitiostane, testolactone;
anti-adrenals such as aminoglutethimide, mitotane, trilostane; folic acid replenisher
such as frolinic acid; aceglatone; aldophosphamide glycoside; aminolevulinic acid;
eniluracil; amsacrine; bestrabucil; bisantrene; edatraxate; defofamine; demecolcine;
diaziquone; elfornithine; elliptinium acetate; an epothilone; etoglucid; gallium nitrate;
hydroxyurea; lentinan; lonidainine; maytansinoids such as maytansine and ansamitocins;
mitoguazone; mitoxantrone; mopidanmol; nitraerine; pentostatin; phenamet; pirarubicin;
losoxantrone; podophyllinic acid; 2-ethylhydrazide; procarbazine; PSK® polysaccharide
complex (JHS Natural Products, Eugene, OR); razoxane; rhizoxin; sizofiran; spirogermanium;
tenuazonic acid; triaziquone; 2,2',2"-trichlorotriethylamine; trichothecenes (especially
T-2 toxin, verracurin A, roridin A and anguidine); urethan; vindesine; dacarbazine;
mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine; arabinoside ("Ara-C");
cyclophosphamide; thiotepa; 6-thioguanine; mercaptopurine; methotrexate; platinum
analogs such as cisplatin and carboplatin; vinblastine; etoposide (VP-16); ifosfamide;
mitoxantrone; vincristine; vinorelbine (NAVELBINE®); novantrone; teniposide; edatrexate;
daunomycin; aminopterin; capecitabine (XELODA®, Roche); ibandronate; CPT-11; topoisomerase
inhibitor RFS 2000; difluoromethylornithine (DMFO); retinoids such as retinoic acid;
and pharmaceutically acceptable salts, acids and derivatives of any of the above.
[0129] Also included in the definition of "chemotherapeutic agent" are: (i) anti-hormonal
agents that act to regulate or inhibit hormone action on tumors such as anti-estrogens
and selective estrogen receptor modulators (SERMs), including, for example, tamoxifen
(including NOLVADEX®; tamoxifen citrate), raloxifene, droloxifene, 4-hydroxytamoxifen,
trioxifene, keoxifene, LY117018, onapristone, and FARESTON® (toremifine citrate);
(ii) aromatase inhibitors that inhibit the enzyme aromatase, which regulates estrogen
production in the adrenal glands, such as, for example, 4(5)-imidazoles, aminoglutethimide,
MEGASE® (megestrol acetate), AROMASIN® (exemestane; Pfizer), formestanie, fadrozole,
RIVISOR® (vorozole), FEMARA® (letrozole; Novartis), and ARIMIDEX® (anastrozole; AstraZeneca);
(iii) anti-androgens such as flutamide, nilutamide, bicalutamide, leuprolide, and
goserelin; as well as troxacitabine (a 1,3-dioxolane nucleoside cytosine analog);
(iv) protein kinase inhibitors such as MEK inhibitors (
WO 2007/044515); (v) lipid kinase inhibitors; (vi) antisense oligonucleotides, particularly those
which inhibit expression of genes in signaling pathways implicated in aberrant cell
proliferation, for example, PKC-alpha, Raf and H-Ras, such as oblimersen (GENASENSE®,
Genta Inc.); (vii) ribozymes such as VEGF expression inhibitors (e.g., ANGIOZYME®)
and HER2 expression inhibitors; (viii) vaccines such as gene therapy vaccines, for
example, ALLOVECTIN®, LEUVECTIN®, and VAXID®; PROLEUKIN® rIL-2; topoisomerase 1 inhibitors
such as LURTOTECAN®; ABARELIX® rmRH; (ix) anti-angiogenic agents such as bevacizumab
(AVASTIN®, Genentech); and pharmaceutically acceptable salts, acids and derivatives
of any of the above.
[0130] Also included in the definition of "chemotherapeutic agent" are therapeutic antibodies
such as alemtuzumab (Campath), bevacizumab (AVASTIN®, Genentech); cetuximab (ERBITUX®,
Imclone); panitumumab (VECTIBIX®, Amgen), rituximab (RITUXAN®, Genentech/Biogen Idec),
ofatumumab (ARZERRA®, GSK), pertuzumab (PERJETA™, OMNITARG™, 2C4, Genentech), trastuzumab
(HERCEPTIN®, Genentech), tositumomab (Bexxar, Corixia), and the antibody drug conjugate,
gemtuzumab ozogamicin (MYLOTARG®, Wyeth).
[0131] Humanized monoclonal antibodies with therapeutic potential as chemotherapeutic agents
in combination with the conjugates of the invention include: alemtuzumab, apolizumab,
aselizumab, atlizumab, bapineuzumab, bevacizumab, bivatuzumab mertansine, cantuzumab
mertansine, cedelizumab, certolizumab pegol, cidfusituzumab, cidtuzumab, daclizumab,
eculizumab, efalizumab, epratuzumab, erlizumab, felvizumab, fontolizumab, gemtuzumab
ozogamicin, inotuzumab ozogamicin, ipilimumab, labetuzumab, lintuzumab, matuzumab,
mepolizumab, motavizumab, motovizumab, natalizumab, nimotuzumab, nolovizumab, numavizumab,
ocrelizumab, omalizumab, palivizumab, pascolizumab, pecfusituzumab, pectuzumab, pertuzumab,
pexelizumab, ralivizumab, ranibizumab, reslivizumab, reslizumab, resyvizumab, rovelizumab,
ruplizumab, sibrotuzumab, siplizumab, sontuzumab, tacatuzumab tetraxetan, tadocizumab,
talizumab, tefibazumab, tocilizumab, toralizumab, trastuzumab, tucotuzumab celmoleukin,
tucusituzumab, umavizumab, urtoxazumab, and visilizumab.
[0132] Pharmaceutical compositions according to the present invention, and for use in accordance
with the present invention, may comprise, in addition to the active ingredient, i.e.
a conjugate compound, a pharmaceutically acceptable excipient, carrier, buffer, stabiliser
or other materials well known to those skilled in the art. Such materials should be
non-toxic and should not interfere with the efficacy of the active ingredient. The
precise nature of the carrier or other material will depend on the route of administration,
which may be oral, or by injection, e.g. cutaneous, subcutaneous, or intravenous.
[0133] Pharmaceutical compositions for oral administration may be in tablet, capsule, powder
or liquid form. A tablet may comprise a solid carrier or an adjuvant. Liquid pharmaceutical
compositions generally comprise a liquid carrier such as water, petroleum, animal
or vegetable oils, mineral oil or synthetic oil. Physiological saline solution, dextrose
or other saccharide solution or glycols such as ethylene glycol, propylene glycol
or polyethylene glycol may be included. A capsule may comprise a solid carrier such
a gelatin.
[0134] For intravenous, cutaneous or subcutaneous injection, or injection at the site of
affliction, the active ingredient will be in the form of a parenterally acceptable
aqueous solution which is pyrogen-free and has suitable pH, isotonicity and stability.
Those of relevant skill in the art are well able to prepare suitable solutions using,
for example, isotonic vehicles such as Sodium Chloride Injection, Ringer's Injection,
Lactated Ringer's Injection. Preservatives, stabilisers, buffers, antioxidants and/or
other additives may be included, as required.
Formulations
[0135] While it is possible for the conjugate compound to be used (e.g., administered) alone,
it is often preferable to present it as a composition or formulation.
[0136] In one embodiment, the composition is a pharmaceutical composition (e.g., formulation,
preparation, medicament) comprising a conjugate compound, as described herein, and
a pharmaceutically acceptable carrier, diluent, or excipient.
[0137] In one embodiment, the composition is a pharmaceutical composition comprising at
least one conjugate compound, as described herein, together with one or more other
pharmaceutically acceptable ingredients well known to those skilled in the art, including,
but not limited to, pharmaceutically acceptable carriers, diluents, excipients, adjuvants,
fillers, buffers, preservatives, anti-oxidants, lubricants, stabilisers, solubilisers,
surfactants (e.g., wetting agents), masking agents, colouring agents, flavouring agents,
and sweetening agents.
[0138] In one embodiment, the composition further comprises other active agents, for example,
other therapeutic or prophylactic agents.
[0139] Suitable carriers, diluents, excipients, etc. can be found in standard pharmaceutical
texts. See, for example,
Handbook of Pharmaceutical Additives, 2nd Edition (eds. M. Ash and I. Ash), 2001 (Synapse
Information Resources, Inc., Endicott, New York, USA),
Remington's Pharmaceutical Sciences, 20th edition, pub. Lippincott, Williams & Wilkins,
2000; and
Handbook of Pharmaceutical Excipients, 2nd edition, 1994.
[0140] Another aspect of the present invention pertains to methods of making a pharmaceutical
composition comprising admixing at least one [
11C]-radiolabelled conjugate or conjugate-like compound, as defined herein, together
with one or more other pharmaceutically acceptable ingredients well known to those
skilled in the art, e.g., carriers, diluents, excipients, etc. If formulated as discrete
units (e.g., tablets, etc.), each unit contains a predetermined amount (dosage) of
the active compound.
[0141] The term "pharmaceutically acceptable," as used herein, pertains to compounds, ingredients,
materials, compositions, dosage forms, etc., which are, within the scope of sound
medical judgment, suitable for use in contact with the tissues of the subject in question
(e.g., human) without excessive toxicity, irritation, allergic response, or other
problem or complication, commensurate with a reasonable benefit/risk ratio. Each carrier,
diluent, excipient, etc. must also be "acceptable" in the sense of being compatible
with the other ingredients of the formulation.
[0142] The formulations may be prepared by any methods well known in the art of pharmacy.
Such methods include the step of bringing into association the active compound with
a carrier which constitutes one or more accessory ingredients. In general, the formulations
are prepared by uniformly and intimately bringing into association the active compound
with carriers (e.g., liquid carriers, finely divided solid carrier, etc.), and then
shaping the product, if necessary.
[0143] The formulation may be prepared to provide for rapid or slow release; immediate,
delayed, timed, or sustained release; or a combination thereof.
[0144] Formulations suitable for parenteral administration (e.g., by injection), include
aqueous or non-aqueous, isotonic, pyrogen-free, sterile liquids (e.g., solutions,
suspensions), in which the active ingredient is dissolved, suspended, or otherwise
provided (e.g., in a liposome or other microparticulate). Such liquids may additional
contain other pharmaceutically acceptable ingredients, such as anti-oxidants, buffers,
preservatives, stabilisers, bacteriostats, suspending agents, thickening agents, and
solutes which render the formulation isotonic with the blood (or other relevant bodily
fluid) of the intended recipient. Examples of excipients include, for example, water,
alcohols, polyols, glycerol, vegetable oils Examples of suitable isotonic carriers
for use in such formulations include Sodium Chloride Injection, Ringer's Solution,
or Lactated Ringer's Injection. Typically, the concentration of the active ingredient
in the liquid is from about 1 ng/ml to about 10 µg/ml, for example from about 10 ng/ml
to about 1 µg/ml. The formulations may be presented in unit-dose or multi-dose sealed
containers, for example, ampoules and vials, and may be stored in a freeze-dried (lyophilised)
condition requiring only the addition of the sterile liquid carrier, for example water
for injections, immediately prior to use. Extemporaneous injection solutions and suspensions
may be prepared from sterile powders, granules, and tablets.
Dosage
[0145] It will be appreciated by one of skill in the art that appropriate dosages of the
conjugate compound, and compositions comprising the conjugate compound, can vary from
patient to patient. Determining the optimal dosage will generally involve the balancing
of the level of therapeutic benefit against any risk or deleterious side effects.
The selected dosage level will depend on a variety of factors including the activity
of the particular compound, the route of administration, the time of administration,
the rate of excretion of the compound, the duration of the treatment, other drugs,
compounds, and/or materials used in combination, the severity of the condition, and
the species, sex, age, weight, condition, general health, and prior medical history
of the patient. The amount of compound and route of administration will ultimately
be at the discretion of the physician, veterinarian, or clinician, although generally
the dosage will be selected to achieve local concentrations at the site of action
which achieve the desired effect without causing substantial harmful or deleterious
side-effects.
[0146] Administration can be effected in one dose, continuously or intermittently (e.g.,
in divided doses at appropriate intervals) throughout the course of treatment. Methods
of determining the most effective means and dosage of administration are well known
to those of skill in the art and will vary with the formulation used for therapy,
the purpose of the therapy, the target cell(s) being treated, and the subject being
treated. Single or multiple administrations can be carried out with the dose level
and pattern being selected by the treating physician, veterinarian, or clinician.
[0147] In general, a suitable dose of the active compound is in the range of about 100 ng
to about 25 mg (more typically about 1 µg to about 10 mg) per kilogram body weight
of the subject per day. Where the active compound is a salt, an ester, an amide, a
prodrug, or the like, the amount administered is calculated on the basis of the parent
compound and so the actual weight to be used is increased proportionately.
[0148] In one embodiment, the active compound is administered to a human patient according
to the following dosage regime: about 100 mg, 3 times daily.
[0149] In one embodiment, the active compound is administered to a human patient according
to the following dosage regime: about 150 mg, 2 times daily.
[0150] In one embodiment, the active compound is administered to a human patient according
to the following dosage regime: about 200 mg, 2 times daily.
[0151] However in one embodiment, the conjugate compound is administered to a human patient
according to the following dosage regime: about 50 or about 75 mg, 3 or 4 times daily.
[0152] In one embodiment, the conjugate compound is administered to a human patient according
to the following dosage regime: about 100 or about 125 mg, 2 times daily.
[0153] The dosage amounts described above may apply to the conjugate (including the PBD
moiety and the linker to the antibody) or to the effective amount of PBD compound
provided, for example the amount of compound that is releasable after cleavage of
the linker.
[0154] For the prevention or treatment of disease, the appropriate dosage of an ADC of the
invention will depend on the type of disease to be treated, as defined above, the
severity and course of the disease, whether the molecule is administered for preventive
or therapeutic purposes, previous therapy, the patient's clinical history and response
to the antibody, and the discretion of the attending physician. The molecule is suitably
administered to the patient at one time or over a series of treatments. Depending
on the type and severity of the disease, about 1 µg/kg to 15 mg/kg (e.g. 0.1-20 mg/kg)
of molecule is an initial candidate dosage for administration to the patient, whether,
for example, by one or more separate administrations, or by continuous infusion. A
typical daily dosage might range from about 1 µg/kg to 100 mg/kg or more, depending
on the factors mentioned above. An exemplary dosage of ADC to be administered to a
patient is in the range of about 0.1 to about 10 mg/kg of patient weight. For repeated
administrations over several days or longer, depending on the condition, the treatment
is sustained until a desired suppression of disease symptoms occurs. An exemplary
dosing regimen comprises a course of administering an initial loading dose of about
4 mg/kg, followed by additional doses every week, two weeks, or three weeks of an
ADC. Other dosage regimens may be useful. The progress of this therapy is easily monitored
by conventional techniques and assays.
Treatment
[0155] The term "treatment," as used herein in the context of treating a condition, pertains
generally to treatment and therapy, whether of a human or an animal (e.g., in veterinary
applications), in which some desired therapeutic effect is achieved, for example,
the inhibition of the progress of the condition, and includes a reduction in the rate
of progress, a halt in the rate of progress, regression of the condition, amelioration
of the condition, and cure of the condition. Treatment as a prophylactic measure (i.e.,
prophylaxis, prevention) is also included.
[0156] The term "therapeutically-effective amount," as used herein, pertains to that amount
of an active compound, or a material, composition or dosage from comprising an active
compound, which is effective for producing some desired therapeutic effect, commensurate
with a reasonable benefit/risk ratio, when administered in accordance with a desired
treatment regimen.
[0157] Similarly, the term "prophylactically-effective amount," as used herein, pertains
to that amount of an active compound, or a material, composition or dosage from comprising
an active compound, which is effective for producing some desired prophylactic effect,
commensurate with a reasonable benefit/risk ratio, when administered in accordance
with a desired treatment regimen.
Preparation of Drug conjugates
[0158] Antibody drug conjugates may be prepared by several routes, employing organic chemistry
reactions, conditions, and reagents known to those skilled in the art, including reaction
of a nucleophilic group of an antibody with a drug-linker reagent. This method may
be employed to prepare the antibody-drug conjugates of the invention.
[0159] Nucleophilic groups on antibodies include, but are not limited to side chain thiol
groups, e.g. cysteine. Thiol groups are nucleophilic and capable of reacting to form
covalent bonds with electrophilic groups on linker moieties such as those of the present
invention. Certain antibodies have reducible interchain disulfides, i.e. cysteine
bridges. Antibodies may be made reactive for conjugation with linker reagents by treatment
with a reducing agent such as DTT (Cleland's reagent, dithiothreitol) or TCEP (tris(2-carboxyethyl)phosphine
hydrochloride;
Getz et al (1999) Anal. Biochem. Vol 273:73-80; Soltec Ventures, Beverly, MA). Each cysteine disulfide bridge will thus form, theoretically,
two reactive thiol nucleophiles. Additional nucleophilic groups can be introduced
into antibodies through the reaction of lysines with 2-iminothiolane (Traut's reagent)
resulting in conversion of an amine into a thiol.
The Subject/Patient
[0160] The subject/patient may be an animal, mammal, a placental mammal, a marsupial (e.g.,
kangaroo, wombat), a monotreme (e.g., duckbilled platypus), a rodent (e.g., a guinea
pig, a hamster, a rat, a mouse), murine (e.g., a mouse), a lagomorph (e.g., a rabbit),
avian (e.g., a bird), canine (e.g., a dog), feline (e.g., a cat), equine (e.g., a
horse), porcine (e.g., a pig), ovine (e.g., a sheep), bovine (e.g., a cow), a primate,
simian (e.g., a monkey or ape), a monkey (e.g., marmoset, baboon), an ape (e.g., gorilla,
chimpanzee, orangutang, gibbon), or a human.
[0161] Furthermore, the subject/patient may be any of its forms of development, for example,
a foetus. In one preferred embodiment, the subject/patient is a human.
Examples
General Experimental Methods
[0162] Optical rotations were measured on an ADP 220 polarimeter (Bellingham Stanley Ltd.)
and concentrations (c) are given in g/100mL. Melting points were measured using a
digital melting point apparatus (Electrothermal). IR spectra were recorded on a Perkin-Elmer
Spectrum 1000 FT IR Spectrometer.
1H and
13C NMR spectra were acquired at 300 K using a Bruker Avance NMR spectrometer at 400
and 100 MHz, respectively. Chemical shifts are reported relative to TMS (δ = 0.0 ppm),
and signals are designated as s (singlet), d (doublet), t (triplet), dt (double triplet),
dd (doublet of doublets), ddd (double doublet of doublets) or m (multiplet), with
coupling constants given in Hertz (Hz). Mass spectroscopy (MS) data were collected
using a Waters Micromass ZQ instrument coupled to a Waters 2695 HPLC with a Waters
2996 PDA. Waters Micromass ZQ parameters used were: Capillary (kV), 3.38; Cone (V),
35; Extractor (V), 3.0; Source temperature (°C), 100; Desolvation Temperature (°C),
200; Cone flow rate (L/h), 50; De-solvation flow rate (L/h), 250. High-resolution
mass spectroscopy (HRMS) data were recorded on a Waters Micromass QTOF Global in positive
W-mode using metal-coated borosilicate glass tips to introduce the samples into the
instrument. Thin Layer Chromatography (TLC) was performed on silica gel aluminium
plates (Merck 60, F
254), and flash chromatography utilised silica gel (Merck 60, 230-400 mesh ASTM). Except
for the HOBt (NovaBiochem) and solid-supported reagents (Argonaut), all other chemicals
and solvents were purchased from Sigma-Aldrich and were used as supplied without further
purification. Anhydrous solvents were prepared by distillation under a dry nitrogen
atmosphere in the presence of an appropriate drying agent, and were stored over 4Å
molecular sieves or sodium wire. Petroleum ether refers to the fraction boiling at
40-60°C.
General LC/MS conditions:
Method 1 (default method, used unless stated otherwise)
[0163] The HPLC (Waters Alliance 2695) was run using a mobile phase of water (A) (formic
acid 0.1%) and acetonitrile (B) (formic acid 0.1%). Gradient: initial composition
5% B held over 1.0 min, then increase from 5% B to 95% B over a 3 min period. The
composition was held for 0.1 min at 95% B, then returned to 5% B in 0.03 minutes and
hold there for 0.87 min. Total gradient run time equals 5 minutes.
Method 2
[0164] The HPLC (Waters Alliance 2695) was run using a mobile phase of water (A) (formic
acid 0.1%) and acetonitrile (B) (formic acid 0.1%). Gradient: initial composition
5% B held over 1.0 minute, then increase from 5% B to 95% B over a 2.5 minute period.
The composition was held for 0.5 minutes at 95% B, then returned to 5% B in 0.1 minutes
and hold there for 0.9 min. Total gradient run time equals 5 minutes.
For both methods
[0165] Flow rate 3.0 mL/min, 400µL was split
via a zero dead volume tee piece which passes into the mass spectrometer. Wavelength
detection range: 220 to 400 nm. Function type: diode array (535 scans). Column: Phenomenex
Onyx Monolithic C18 50 x 4.60 mm.
[0166] The reverse phase flash purification conditions were as follows: The Flash purification
system (Varian 971-Fp) was run using a mobile phase of water (A) and acetonitrile
(B). Gradient: initial composition 5% B over 20 C.V. (Column Volume) then 5% B to
70% B within 60 C.V. The composition was held for 15 C.V. at 95% B, and then returned
to 5% B in 5 C.V. and held at 5%B for 10 C.V. Total gradient run time equals 120 C.V.
Flow rate 6.0 mL/min. Wavelength detection range: 254 nm. Column: Agilent AX1372-1
SF10-5.5gC8.
[0167] Preparative HPLC: Reverse-phase ultra-high-performance liquid chromatography (UPLC)
was carried out on Phenomenex Gemini NX 5µ C-18 columns of the following dimensions:
150 x 4.6 mm for analysis, and 150 x 21.20 mm for preparative work. All UPLC experiments
were performed with gradient conditions. Eluents used were solvent A (H
2O with 0.1% Formic acid) and solvent B (CH
3CN with 0.1% Formic acid). Flow rates used were 1.0 ml/min for analytical, and 20.0
ml/min for preparative HPLC. Detection was at 254 and 280 nm.
Synthesis of Intermediate 12
[0168]

(a) 1',3'-Bis[2-methoxy-4-(methoxycarbonyl)phenoxy]propane (3)
[0169] Diisopropyl azodicarboxylate (71.3 mL, 73.2 g, 362 mmol) was added drop-wise over
a period of 60 min to an overhead stirred solution of methyl vanillate
2 (60.0 g, 329 mmol) and Ph
3P (129.4 g, 494 mmol) in anhydrous THF (800 mL) at 0-5°C (ice/acetone) under a nitrogen
atmosphere. The reaction mixture was allowed to stir at 0-5°C for an additional 1
hour after which time a solution of 1,3-propanediol (11.4 mL, 12.0 g, 158 mmol) in
THF (12 mL) was added drop-wise over a period of 20 min. The reaction mixture was
allowed to warm to room temperature and stirred for 5 days. The resulting white precipitate
3 was collected by vacuum filtration, washed with THF and dried in a vacuum desiccator
to constant weight. Yield = 54.7 g (84% based on 1,3-propanediol). Purity satisfactory
by LC/MS (3.20 min (ES+)
m/
z (relative intensity) 427 ([
M + Na]
+., 10);
1H NMR (400 MHz, CDCl
3) δ 7.64 (dd, 2H,
J = 1.8, 8.3 Hz), 7.54 (d, 2H,
J = 1.8 Hz), 6.93 (d, 2H,
J = 8.5 Hz), 4.30 (t, 4H,
J = 6.1 Hz), 3.90 (s, 6H), 3.89 (s, 6H), 2.40 (p, 2H,
J = 6.0 Hz).
(b) 1',3'-Bis[2-methoxy-4-(methoxycarbonyl)-5-nitrophenoxy]propane (4)
[0170] Solid Cu(NO
3)
2.3H
2O (81.5 g, 337.5 mmol) was added slowly to an overhead stirred slurry of the bis-ester
3 (54.7 g, 135 mmol) in acetic anhydride (650 mL) at 0-5°C (ice/acetone). The reaction
mixture was allowed to stir for 1 hour at 0-5°C and then allowed to warm to room temperature.
A mild exotherm (ca. 40-50°C), accompanied by thickening of the mixture and evolution
of NO
2 was observed at this stage. Additional acetic anhydride (300 mL) was added and the
reaction mixture was allowed to stir for 16 hours at room temperature. The reaction
mixture was poured on to ice (∼ 1.5 L), stirred and allowed to return to room temperature.
The resulting yellow precipitate was collected by vacuum filtration and dried in a
desiccator to afford the desired
bis-nitro compound
4 as a yellow solid. Yield = 66.7 g (100%). Purity satisfactory by LC/MS (3.25 min
(ES+)
m/
z (relative intensity) 517 ([
M + Na]
+., 40);
1H NMR (400 MHz, CDCl
3) δ 7.49 (s, 2H), 7.06 (s, 2H), 4.32 (t, 4H,
J = 6.0 Hz), 3.95 (s, 6H), 3.90 (s, 6H), 2.45-2.40 (m, 2H).
(c) 1',3'-Bis(4-carboxy-2-methoxy-5-nitrophenoxy)propane (5)
[0171] A slurry of the methyl ester
4 (66.7 g, 135 mmol) in THF (700 mL) was treated with 1N NaOH (700 mL) and the reaction
mixture was allowed to stir vigorously at room temperature. After 4 days stirring,
the slurry became a dark coloured solution which was subjected to rotary evaporation
under reduced pressure to remove THF. The resulting aqueous residue was acidified
to pH 1 with concentrated HCI and the colourless precipitate
5 was collected and dried thoroughly in a vacuum oven (50 °C). Yield = 54.5 g (87%).
Purity satisfactory by LC/MS (2.65 min (ES+)
m/
z (relative intensity) 489 ([
M + Na]
+., 30));
1H NMR (400 MHz, DMSO-
d6) δ 7.62 (s, 2H), 7.30 (s, 2H), 4.29 (t, 4H,
J = 6.0 Hz), 3.85 (s, 6H), 2.30-2.26 (m, 2H).
(d) 1,1'-[[(Propane-1,3-diyl)dioxy]bis[(5-methoxy-2-nitro-1,4-phenylene)carbonyl]]bis[(2S,4R)-methyl-4-hydroxypyrrolidine-2-carboxylate]
(6)
[0172] Oxalyl chloride (24.5 mL, 35.6 g, 281 mmol) was added to a stirred suspension of
the nitrobenzoic acid
5 (43 g, 92.3 mmol) and DMF (6 mL) in anhydrous DCM (600mL). Following initial effervescence
the reaction suspension became a solution and the mixture was allowed to stir at room
temperature for 16 hours. Conversion to the acid chloride was confirmed by treating
a sample of the reaction mixture with MeOH and the resulting
bis-methyl ester was observed by LC/MS. The majority of solvent was removed by evaporation
under reduced pressure; the resulting concentrated solution was re-dissolved in a
minimum amount of dry DCM and triturated with diethyl ether. The resulting yellow
precipitate was collected by filtration, washed with cold diethyl ether and dried
for 1 hour in a vacuum oven at 40°C. The solid acid chloride was added portionwise
over a period of 25 min to a stirred suspension of (2
S,4
R)-methyl-4-hydroxypyrrolidine-2-carboxylate hydrochloride (38.1 g, 210 mmol) and TEA
(64.5 mL, g, 463 mmol) in DCM (400mL) at -40°C (dry ice/CH
3CN). Immediately, the reaction was complete as judged by LC/MS (2.47 min (ES+)
m/
z (relative intensity) 721 ([
M + H]
+., 100). The mixture was diluted with DCM (200 mL) and washed with 1N HCI (300 mL),
saturated NaHCO
3 (300 mL), brine (400 mL), dried (MgSO
4), filtered and the solvent evaporated
in vacuo to give the pure product
6 as an orange solid (66.7 g, 100%). [α]
22D = -46.1° (c = 0.47, CHCl
3);
1H NMR (400 MHz, CDCl
3) (rotamers) δ 7.63 (s, 2H), 6.82 (s, 2H), 4.79-4.72 (m, 2H), 4.49-4.28 (m, 6H), 3.96
(s, 6H), 3.79 (s, 6H), 3.46-3.38 (m, 2H), 3.02 (d, 2H,
J = 11.1 Hz), 2.48-2.30 (m, 4H), 2.29-2.04 (m, 4H);
13C NMR (100 MHz, CDCl
3) (rotamers) δ 172.4, 166.7, 154.6, 148.4, 137.2, 127.0, 109.7, 108.2, 69.7, 65.1,
57.4, 57.0, 56.7, 52.4, 37.8, 29.0; IR (ATR, CHCl
3) 3410 (br), 3010, 2953, 1741, 1622, 1577, 1519, 1455, 1429, 1334, 1274, 1211, 1177,
1072, 1050, 1008, 871 cm
-1; MS (ES+)
m/
z (relative intensity) 721 ([
M + H]
+., 47), 388 (80); HRMS [
M + H]
+. theoretical C
31H
36N
4O
16 m/
z 721.2199, found (ES
+)
m/
z 721.2227.
(e) 1,1'-[[(Propane-1,3-diyl)dioxy]bis(11aS,2R)-2-(hydroxy)-7-methoxy-1,2,3,10,11,11a-hexahydro-5H-pyrrolo[2,1-c][1,4]-benzodiazepin-5,11-dione]
(7)
[0173] Method A: A solution of the nitro-ester
6 (44 g, 61.1 mmol) in MeOH (2.8 L) was added to freshly purchased Raney® nickel (∼
50 g of a ∼ 50% slurry in H
2O) and anti-bumping granules in a 5L 3-neck round bottomed flask. The mixture was
heated at reflux and then treated dropwise with a solution of hydrazine hydrate (21.6
mL, 22.2 g, 693 mmol) in MeOH (200 mL) at which point vigorous effervescence was observed.
When the addition was complete (∼ 45 min) additional Raney® nickel was added carefully
until effervescence had ceased and the initial yellow colour of the reaction mixture
was discharged. The mixture was heated at reflux for a further 5 min at which point
the reaction was deemed complete by TLC (90:10 v/v CHCl
3/MeOH) and LC/MS (2.12 min (ES+)
m/
z (relative intensity) 597 ([
M + H]
+., 100)). The reaction mixture was filtered hot immediately through a sinter funnel
containing celite with vacuum suction. The filtrate was reduced in volume by evaporation
in vacuo at which point a colourless precipitate formed which was collected by filtration
and dried in a vacuum desiccator to provide
7 (31 g, 85%). [α]
27D = +404° (
c = 0.10, DMF);
1H NMR (400 MHz, DMSO-
d6) δ 10.2 (s, 2H, N
H), 7.26 (s, 2H), 6.73 (s, 2H), 5.11 (d, 2H,
J = 3.98 Hz, O
H), 4.32-4.27 (m, 2H), 4.19-4.07 (m, 6H), 3.78 (s, 6H), 3.62 (dd, 2H,
J = 12.1, 3.60 Hz), 3.43 (dd, 2H,
J = 12.0, 4.72 Hz), 2.67-2.57 (m, 2H), 2.26 (p, 2H,
J = 5.90 Hz), 1.99-1.89 (m, 2H);
13C NMR (100 MHz, DMSO-
d6) δ 169.1, 164.0, 149.9, 144.5, 129.8, 117.1, 111.3, 104.5, 54.8, 54.4, 53.1, 33.5,
27.5; IR (ATR, neat) 3438, 1680, 1654, 1610, 1605, 1516, 1490, 1434, 1379, 1263, 1234,
1216, 1177, 1156, 1115, 1089, 1038, 1018, 952, 870 cm
-1; MS (ES
+)
m/
z (relative intensity) 619 ([
M + Na]
+., 10), 597 ([
M + H]
+., 52), 445 (12), 326 (11); HRMS [
M + H]
+. theoretical C
29H
32N
4O
10 m/
z 597.2191, found (ES
+)
m/
z 597.2205.
[0174] Method B: A suspension of 10% Pd/C (7.5 g, 10% w/w) in DMF (40 mL) was added to a solution
of the nitro-ester
6 (75 g, 104 mmol) in DMF (360 mL). The suspension was hydrogenated in a Parr hydrogenation
apparatus over 8 hours. Progress of the reaction was monitored by LC/MS after the
hydrogen uptake had stopped. Solid Pd/C was removed by filtration and the filtrate
was concentrated by rotary evaporation under vacuum (below 10mbar) at 40°C to afford
a dark oil containing traces of DMF and residual charcoal. The residue was digested
in EtOH (500 mL) at 40°C on a water bath (rotary evaporator bath) and the resulting
suspension was filtered through celite and washed with ethanol (500 mL) to give a
clear filtrate. Hydrazine hydrate (10 mL, 321 mmol) was added to the solution and
the reaction mixture was heated at reflux. After 20 minutes the formation of a white
precipitate was observed and reflux was allowed to continue for a further 30 minutes.
The mixture was allowed to cool down to room temperature and the precipitate was retrieved
by filtration, washed with diethyl ether (2:1 volume of precipitate) and dried in
a vacuum desiccator to provide
7 (50 g, 81%). Analytical data for method B: Identical to those obtained for Method
A (optical rotation,
1H NMR, LC/MS and TLC).
(f) 1,1'-[[(Propane-1,3-diyl)dioxy]bis(11aS, 2R)-2-(tert-butyldimethylsilyloxy)-7-methoxy-1,2,3,10,11,11a-hexahydro-5H-pyrrolo[2,1-c][1,4]-benzodiazepin-5,11-dione]
(8)
[0175] TBSCI (27.6 g, 182.9 mmol) and imidazole (29.9 g, 438.8 mmol) were added to a cloudy
solution of the tetralactam
7 (21.8 g, 36.6 mmol) in anhydrous DMF (400 mL) at 0°C (ice/acetone). The mixture was
allowed to stir under a nitrogen atmosphere for 3 hours after which time the reaction
was deemed complete as judged by LC/MS (3.90 min (ES+)
m/
z (relative intensity) 825 ([
M + H]
+., 100). The reaction mixture was poured onto ice (∼ 1.75 L) and allowed to warm to
room temperature with stirring. The resulting white precipitate was collected by vacuum
filtration, washed with H
2O, diethyl ether and dried in the vacuum desicator to provide pure
8 (30.1 g, 99%). [α]
23D = +234° (
c = 0.41, CHCl
3);
1H NMR (400 MHz, CDCl
3) δ 8.65 (s, 2H, N
H), 7.44 (s, 2H), 6.54 (s, 2H), 4.50 (p, 2H,
J = 5.38 Hz), 4.21-4.10 (m, 6H), 3.87 (s, 6H), 3.73-3.63 (m, 4H), 2.85-2.79 (m, 2H),
2.36-2.29 (m, 2H), 2.07-1.99 (m, 2H), 0.86 (s, 18H), 0.08 (s, 12H);
13C NMR (100 MHz, CDCl
3) δ 170.4, 165.7, 151.4, 146.6, 129.7, 118.9, 112.8, 105.3, 69.2, 65.4, 56.3, 55.7,
54.2, 35.2, 28.7, 25.7, 18.0, -4.82 and -4.86; IR (ATR, CHCl
3) 3235, 2955, 2926, 2855, 1698, 1695, 1603, 1518, 1491, 1446, 1380, 1356, 1251, 1220,
1120, 1099, 1033 cm
-1; MS (ES
+)
m/
z (relative intensity) 825 ([
M + H]
+., 62), 721 (14), 440 (38); HRMS [
M + H]
+. theoretical C
41H
60N
4O
10Si
2 m/
z 825.3921, found (ES
+)
m/
z 825.3948.
(g) 1,1'-[[(Propane-1,3-diyl)dioxy]bis(11aS,2R)-2-(tert-butyldimethylsilyloxy)-7-methoxy-10-((2-(trimethylsilyl)ethoxy)methyl)-1,2,3,10,11,11a-hexahydro-5H-pyrrolo[2,1-c][1,4]-benzodiazepin-5,11-dione]
(9)
[0176] A solution of
n-BuLi (68.3 mL of a 1.6 M solution in hexane, 109 mmol) was added dropwise to a stirred
suspension of the tetralactam
8 (30.08 g, 36.4 mmol) in anhydrous THF (600 mL) at -30°C (dry ice/ethylene glycol)
under a nitrogen atmosphere. The reaction mixture was allowed to stir at this temperature
for 1 hour (now a reddish orange colour) at which point a solution of SEMCI (19.3
mL, 18.2 g, 109 mmol) in anhydrous THF (120 mL) was added dropwise. The reaction mixture
was allowed to slowly warm to room temperature and was stirred for 16 hours under
a nitrogen atmosphere. The reaction was deemed complete as judged by TLC (EtOAc) and
LC/MS (4.77 min (ES+)
m/
z (relative intensity) 1085 ([
M + H]
+., 100). The THF was removed by evaporation
in vacuo and the resulting residue dissolved in EtOAc (750 mL), washed with H
2O (250 mL), brine (250 mL), dried (MgSO
4) filtered and evaporated
in vacuo to provide the crude N10-SEM-protected tetralactam
9 as an oil (max
m 39.5 g, 100%). Product carried through to next step without purification. [α]
23D = +163° (
c = 0.41, CHCl
3);
1H NMR (400 MHz, CDCl
3) δ 7.33 (s, 2H), 7.22 (s, 2H), 5.47 (d, 2H,
J = 9.98 Hz), 4.68 (d, 2H,
J = 9.99 Hz), 4.57 (p, 2H,
J = 5.77 Hz), 4.29-4.19 (m, 6H), 3.89 (s, 6H), 3.79-3.51 (m, 8H), 2.87-2.81 (m, 2H),
2.41 (p, 2H,
J = 5.81 Hz), 2.03-1.90 (m, 2H), 1.02-0.81 (m, 22H), 0.09 (s, 12H), 0.01 (s, 18H);
13C NMR (100 MHz, CDCl
3) δ 170.0, 165.7, 151.2, 147.5, 133.8, 121.8, 111.6, 106.9, 78.1, 69.6, 67.1, 65.5,
56.6, 56.3, 53.7, 35.6, 30.0, 25.8, 18.4, 18.1, -1.24, -4.73; IR (ATR, CHCl
3) 2951, 1685, 1640, 1606, 1517, 1462, 1433, 1360, 1247, 1127, 1065 cm
-1; MS (ES
+)
m/
z (relative intensity) 1113 ([
M + Na]
+., 48), 1085 ([
M + H]
+., 100), 1009 (5), 813 (6); HRMS [
M + H]
+. theoretical C
53H
88N
4O
12Si
4 m/
z 1085.5548, found (ES
+)
m/
z 1085.5542.
(h) 1,1'-[[(Propane-1,3-diyl)dioxy]bis(11aS,2R)-2-hydroxy-7-methoxy-10-((2-(trimethylsilyl)ethoxy)methyl)-1,2,3,10,11,11a-hexahydro-5H-pyrrolo[2,1-c][1,4]-benzodiazepin-5,11-dione]
(10)
[0177] A solution of TBAF (150 mL of a 1.0 M solution in THF, 150 mmol) was added to a stirred
solution of the crude bis-silyl ether
9 [84.0 g (max
m 56.8 g), 52.4 mmol] in THF (800 mL) at room temperature. After stirring for 1 hour,
analysis of the reaction mixture by TLC (95:5 v/v CHCl
3/MeOH) revealed completion of reaction. The THF was removed by evaporation under reduced
pressure at room temperature and the resulting residue dissolved in EtOAc (500 mL)
and washed with NH
4Cl (300 mL). The combined organic layers were washed with brine (60 mL), dried (MgSO
4), filtered and evaporated under reduced pressure to provide the crude product. Purification
by flash chromatography (gradient elution: 100% CHCl
3 to 96:4 v/v CHCl
3/MeOH) gave the pure tetralactam
10 as a white foam (36.0 g, 79%). LC/MS 3.33 min (ES+)
m/
z (relative intensity) 879 ([
M + Na]
+., 100), 857 ([
M + H]
+., 40); [α]
23D = +202° (
c = 0.34, CHCl
3);
1H NMR (400 MHz, CDCl
3) δ 7.28 (s, 2H), 7.20 (s, 2H), 5.44 (d, 2H,
J = 10.0 Hz), 4.72 (d, 2H,
J = 10.0 Hz), 4.61-4.58 (m, 2H), 4.25 (t, 4H,
J = 5.83 Hz), 4.20-4.16 (m, 2H), 3.91-3.85 (m, 8H), 3.77-3.54 (m, 6H), 3.01 (br s,
2H, O
H), 2.96-2.90 (m, 2H), 2.38 (p, 2H,
J = 5.77 Hz), 2.11-2.05 (m, 2H), 1.00-0.91 (m, 4H), 0.00 (s, 18H);
13C NMR (100 MHz, CDCl
3) δ 169.5, 165.9, 151.3, 147.4, 133.7, 121.5, 111.6, 106.9, 79.4, 69.3, 67.2, 65.2,
56.5, 56.2, 54.1, 35.2, 29.1, 18.4, -1.23; IR (ATR, CHCl
3) 2956, 1684, 1625, 1604, 1518, 1464, 1434, 1361, 1238, 1058, 1021 cm
-1; MS (ES
+)
m/
z (relative intensity) 885 ([
M + 29]
+., 70), 857 ([
M + H]
+., 100), 711 (8), 448 (17); HRMS [
M + H]
+. theoretical C
41H
60N
4O
12Si
2 m/
z 857.3819, found (ES
+)
m/
z 857.3826.
(i) 1,1'-[[(Propane-1,3-diyl)dioxy]bis(11aS)-7-methoxy-2-oxo-10-((2-(trimethylsilyl)ethoxy)methyl)-1,2,3,10,11,11a-hexahydro-5H-pyrrolo[2,1-c][1,4]-benzodiazepin-5,11-dione]
(11)
[0178] Diol
10 (25.6 g, 30 mmol, 1 eq.), NaOAc (6.9 g, 84 mmol, 2.8 eq.) and TEMPO (188 mg, 1.2
mmol, 0.04 eq.) were dissolved in DCM (326 mL) under Ar. This was cooled to -8°C (internal
temperature) and TCCA (9.7 g, 42 mmol, 1.4 eq.) was added portionwise over 15 minutes.
TLC (EtOAc) and LC/MS [3.60 min. (ES+)
m/
z (relative intensity) 854.21 ([M + H]
+., 40), (ES-)
m/
z (relative intensity) 887.07 ([M - H + Cl]
-., 10)] after 30 minutes indicated that reaction was complete. Cold DCM (200 mL) was
added and the mixture was filtered through a pad of Celite before washing with a solution
of saturated sodium hydrogen carbonate/ sodium thiosulfate (1:1 v/v; 200 mL x 2).
The organic layer was dried with MgSO
4, filtered and the solvent removed
in vacuo to yield a yellow/orange sponge (25.4 g, 99%). LC/MS [3.60 min. (ES+)
m/
z (relative intensity) 854.21 ([M + H]
+., 40); [α]
20D = +291° (
c = 0.26, CHCl
3);
1H NMR (400 MHz, CDCl
3) δ 7.32 (s, 2H), 7.25 (s, 2H), 5.50 (d, 2H,
J = 10.1 Hz), 4.75 (d, 2H,
J = 10.1 Hz), 4.60 (dd, 2H,
J = 9.85, 3.07 Hz), 4.31-4.18 (m, 6H), 3.89-3.84 (m, 8H), 3.78-3.62 (m, 4H), 3.55 (dd,
2H,
J = 19.2, 2.85 Hz), 2.76 (dd, 2H,
J = 19.2, 9.90 Hz), 2.42 (p, 2H,
J = 5.77 Hz), 0.98-0.91 (m, 4H), 0.00 (s, 18H);
13C NMR (100 MHz, CDCl
3) δ 206.8, 168.8, 165.9, 151.8, 148.0, 133.9, 120.9, 111.6, 107.2, 78.2, 67.3, 65.6,
56.3, 54.9, 52.4, 37.4, 29.0, 18.4, -1.24; IR (ATR, CHCl
3) 2957, 1763, 1685, 1644, 1606, 1516, 1457, 1434, 1360, 1247, 1209, 1098, 1066, 1023
cm
-1; MS (ES
+)
m/
z (relative intensity) 881 ([
M + 29]
+., 38), 853 ([
M + H]
+., 100), 707 (8), 542 (12); HRMS [
M + H]
+. theoretical C
41H
56N
4O
12Si
2 m/
z 853.3506, found (ES
+)
m/
z 853.3502.
(j) 1,1'-[[(Propane-1,3-diyl)dioxy]bis(11aS)-7-methoxy-2-[[(trifluoromethyl)sulfonyl]oxy]-10-((2-(trimethylsilyl)ethoxy)methyl)-1,10,11,11a-tetrahydro-5H-pyrrolo[2,1-c][1,4]-benzodiazepin-5,11-dione]
(12)
[0179] Anhydrous 2,6-lutidine (5.15 mL, 4.74 g, 44.2 mmol) was injected in one portion to
a vigorously stirred solution of bis-ketone
11 (6.08 g, 7.1 mmol) in dry DCM (180 mL) at -45°C (dry ice/acetonitrile) under a nitrogen
atmosphere. Anhydrous triflic anhydride, taken from a freshly opened ampoule (7.2
mL, 12.08 g, 42.8 mmol), was injected rapidly dropwise, while maintaining the temperature
at -40°C or below. The reaction mixture was allowed to stir at - 45°C for 1 hour at
which point TLC (50/50 v/v
n-hexane/EtOAc) revealed the complete consumption of starting material. The cold reaction
mixture was immediately diluted with DCM (200 mL) and, with vigorous shaking, washed
with water (1 x 100 mL), 5% citric acid solution (1 x 200 mL) saturated NaHCO
3 (200 mL), brine (100 mL) and dried (MgSO
4). Filtration and evaporation of the solvent under reduced pressure afforded the crude
product which was purified by flash column chromatography (gradient elution: 90:10
v/v
n-hexane/EtOAc to 70:30 v/v
n-hexane/EtOAc) to afford bis-enol triflate
12 as a yellow foam (5.5 g, 70%). LC/MS 4.32 min (ES+)
m/
z (relative intensity) 1139 ([
M + Na]
+., 20); [α]
24D = +271° (
c = 0.18, CHCl
3);
1H NMR (400 MHz, CDCl
3) δ 7.33 (s, 2H), 7.26 (s, 2H), 7.14 (t, 2H,
J = 1.97 Hz), 5.51 (d, 2H,
J = 10.1 Hz), 4.76 (d, 2H,
J = 10.1 Hz), 4.62 (dd, 2H,
J = 11.0, 3.69 Hz), 4.32-4.23 (m, 4H), 3.94-3.90 (m, 8H), 3.81-3.64 (m, 4H), 3.16 (ddd,
2H,
J = 16.3, 11.0, 2.36 Hz), 2.43 (p, 2H,
J = 5.85 Hz), 1.23-0.92 (m, 4H), 0.02 (s, 18H);
13C NMR (100 MHz, CDCl
3) δ 167.1, 162.7, 151.9, 148.0, 138.4, 133.6, 120.2, 118.8, 111.9, 107.4, 78.6, 67.5,
65.6, 56.7, 56.3, 30.8, 29.0, 18.4, -1.25; IR (ATR, CHCl
3) 2958, 1690, 1646, 1605, 1517, 1456, 1428, 1360, 1327, 1207, 1136, 1096, 1060, 1022,
938, 913 cm
-1; MS (ES
+)
m/
z (relative intensity) 1144 ([
M + 28]
+., 100), 1117 ([
M + H]
+., 48), 1041 (40), 578 (8); HRMS [
M + H]
+. theoretical C
43H
54N
4O
16Si
2S
2F
6 m/
z 1117.2491, found (ES
+)
m/
z 1117.2465.
Example 1
[0180]

(a) (S)-8-(3-(((S)-2-(4-aminophenyl)-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl
trifluoromethanesulfonate (13)
[0181] Pd(PPh
3)
4 (116.9 mg, 0.101 mmol) was added to a stirred mixture of the bis-enol triflate
12 (5.65 g, 5.06 mmol), 4-Aminophenylboronic acid pinacol ester (1 g, 4.56 mmol), Na
2CO
3 (2.46 g, 23.2 mmol), MeOH (37 mL), toluene (74 mL) and water (37 mL). The reaction
mixture was allowed to stir at 30°C under a nitrogen atmosphere for 24 hours after
which time all the boronic ester has consumed. The reaction mixture was then evaporated
to dryness before the residue was taken up in EtOAc (150 mL) and washed with H
2O (2 x 100 mL), brine (150 mL), dried (MgSO
4), filtered and evaporated under reduced pressure to provide the crude product. Purification
by flash chromatography (gradient elution: 80:20 v/v Hexane/EtOAc to 60:40 v/v Hexane/EtOAc)
afforded product
13 as a yellowish foam (2.4 g, 45%). LC/MS 4.02 min (ES+)
m/
z (relative intensity) 1060.21 ([
M + H]
+., 100);
1H-NMR: (CDCl
3, 400 MHz) δ 7.40 (s, 1H), 7.33 (s, 1H), 7.27 (bs, 3H), 7.24 (d, 2H,
J = 8.5 Hz), 7.15 (t, 1H,
J = 2.0 Hz), 6.66 (d, 2H,
J = 8.5 Hz), 5.52 (d, 2H,
J = 10.0 Hz), 4.77 (d, 1H,
J = 10.0 Hz), 4.76 (d, 1H,
J = 10.0 Hz), 4.62 (dd, 1H,
J = 3.7, 11.0 Hz), 4.58 (dd, 1H,
J = 3.4, 10.6 Hz), 4.29 (t, 4H,
J = 5.6 Hz), 4.00-3.85 (m, 8H), 3.80 - 3.60 (m, 4H), 3.16 (ddd, 1H,
J = 2.4, 11.0, 16.3 Hz), 3.11 (ddd, 1H,
J = 2.2, 10.5, 16.1 Hz), 2.43 (p, 2H,
J = 5.9 Hz), 1.1-0.9 (m, 4H), 0.2 (s, 18H).
13C-NMR: (CDCl
3, 100 MHz) δ 169.8, 168.3, 164.0, 162.7, 153.3, 152.6, 149.28, 149.0, 147.6, 139.6,
134.8, 134.5, 127.9, 127.5, 125.1, 123.21, 121.5, 120.5, 120.1, 116.4, 113.2, 108.7,
79.8, 79.6, 68.7, 68.5, 67.0, 66.8, 58.8, 58.0, 57.6, 32.8, 32.0, 30.3, 19.7, 0.25.
(b) (S)-2-(4-Aminophenyl)-8-(3-(((S)-2-cyclopropyl-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-10-((2-(trimethylsilyl)ethoxy)methyl)-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-5,11(10H,11aH)-dione
(14)
[0182] Triphenylarsine (0.24 g, 0.8 mmol), silver (I) oxide (1.02 g, 4.4 mmol), cyclopropylboronic
acid (0.47 g, 5.5 mmol) and starting material
13 (1.15 g, 1.1 mmol) were dissolved in dioxane (30 mL) under an argon atmosphere. Potassium
phosphate tribasic (2.8 g, 13.2 mmol) was ground-up with a pestle and mortar and quickly
added to the reaction mixture. The reaction mixture was evacuated and flushed with
argon 3 times and heated to 71°C. Palladium (II)
bis (benzonitrile chloride) (84 mg, 0.22 mmol) was added and the reaction vessel was
evacuated and flushed with argon 3 times. After 10 minutes a small sample was taken
for analysis by TLC (80:20 v/v ethyl acetate/hexane) and LC/MS. After 30 minutes the
reaction had gone to completion (LC/MS analysis indicated complete consumption of
starting material) and the reaction was filtered through celite and the filter pad
washed with ethyl acetate (400 mL). The filtrate was washed with water (2 x 200 mL)
and brine (2 x 200 mL). The organic layer was dried with MgSO
4, filtered and the solvent removed
in vacuo. Purification by silica gel column chromatography (30:70 v/v Hexane/ Ethyl acetate)
afforded the product
14 as an orangey/yellow solid (0.66 g, 63%). Method 1, LC/MS (3.85 min (ES
+)
m/
z (relative intensity) 952.17 ([M + H]
+., 100).
1H NMR (400 MHz, CDCl
3) δ 7.36 (d, 2H,
J = 8.4 Hz), 7.30 (s, 1H), 7.25 - 7.19 (m, 4H), 6.68 (s, 1H), 6.62 (d, 2H,
J = 8.4 Hz), 5.49 (dd, 2H,
J = 5.6, 10.0 Hz), 4.73 (app. t, 2H,
J = 10.8 Hz), 4.54 (dd, 1H,
J = 3.2, 10.4 Hz), 4.40 (dd, 1H,
J = 3.2, 10.4 Hz), 4.29 - 4.23 (m, 4H), 3.91 - 3.85 (m, 7H), 3.80 - 3.71 (m, 2H), 3.70
- 3.61 (m, 2H), 3.38 - 3.32 (m, 1H), 3.12 - 3.01 (m, 1H), 2.50 - 2.69 (m, 1H), 2.40
(q, 2H,
J = 5.6 Hz), 1.50 - 1.43 (m, 1H), 0.99 - 0.71 (m, 6H), 0.54 - 0.59 (m, 2H), 0.00 (s,
18H) ppm.
(c) (S)-2-(4-Aminophenyl)-8-(3-(((S)-2-cyclopropyl-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-5(11aH)-one
(15)
[0183] SEM dilactam
14 (0.66 g, 0.69 mmol) was dissolved in THF (23 mL) and cooled to -78°C under an argon
atmosphere. Super-Hydride® solution (1.7 mL, 1 M in THF) was added drop wise over
5 minutes while monitoring the temperature. After 20 minutes a small sample was taken
and washed with water for LC/MS analysis. Water (50 mL) was added and the cold bath
was removed. The organic layer was extracted and washed with brine (60 mL). The combined
aqueous layers were washed with CH
2Cl
2/MeOH (90/10 v/v) (2 x 50 mL). The combined organic layers were dried with MgSO
4, filtered and the solvent removed
in vacuo. The crude product was dissolved in MeOH (48 mL), CH
2Cl
2 (18 mL) and water (6 mL) and sufficient silica gel was added to afford a thick suspension.
After 5 days stirring, the suspension was filtered through a sintered funnel and washed
with CH
2Cl
2/MeOH (9:1) (∼ 200 mL) until product ceased to be eluted. The organic layer was washed
with brine (2 x 70 mL), dried with MgSO
4, filtered and the solvent removed
in vacuo. Purification by silica gel column chromatography (100% CHCl
3 to 96/4 v/v CHCl
3/MeOH) afforded the product
15 as a yellow solid (302 mg, 66%). Method 1, LC/MS (2.42 min (ES
+)
m/
z (relative intensity) 660.74 ([M + H]
+., 30).
1H NMR (400 MHz, CDCl
3) δ 7.86 (d, 1H,
J = 3.6 Hz), 7.78 (d, 1H,
J = 3.6 Hz), 7.58 - 7.44 (m, 3H), 7.34 - 7.20 (m, 3H), 6.88 - 6.66 (m, 4H), 4.35 -
4.15 (m, 6H), 3.95 - 3.75 (m, 7H), 3.39 - 3.22 (m, 1H), 3.14 - 3.04 (m, 1H), 2.93
- 2.85 (m, 1H), 2.46 - 2.36 (m, 2H), 1.49 - 1.41 (m, 1H), 0.80 - 0.72 (m, 2H), 0.58
- 0.51 (app. s, 2H) ppm.
(d) Allyl ((2S)-1-(((2S)-1-((4-(8-(3-((2-cyclopropyl-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(16)
[0184] In a degassed round bottom flask filled with argon, HO-Ala-Val-alloc (149.6 mg, 0.549
mmol) and EEDQ (135.8 mg, 0.549 mmol) were dissolved in a 9:1 mixture of dry CH
2Cl
2/MeOH (5 mL). The flask was wrapped in aluminium foil and the reaction mixture was
allowed to stir at room temperature for 1 hour before starting material
15 (302 mg, 0.457 mmol) was added. The reaction mixture was left to stir for a further
40 hours at room temperature before the volatiles were removed by rotary evaporation
under reduced pressure (the reaction was followed by LC/MS, RT starting material 2.32
min, (ES
+ 660.29 ([
M+H]
+.,100)). The crude product was directly purified by silica gel chromatography column
(100% CHCl
3 to 90/10 v/v CHCl
3/MeOH) to afford the pure product (
16) in 42% yield (174 mg). Method 2 LC/MS (2.70 min (ES+)
m/
z (relative intensity) 914.73 ([
M+H]
+., 60), 660.43 (60), 184.31 (100)).
(e) (2S)-2-amino-N-((2S)-1-((4-(8-(3-((2-cyclopropyl-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide
(17)
[0185] The starting material
16 (170 mg, 0.185 mmol) was dissolved in dry CH
2Cl
2 (5 mL) in a round bottom flask filled with argon, before pyrrolidine (41 µL, 0.21
mmol) was added. The flask was purged/refilled three times with argon before Pd(PPh
3)
4 (14 mg, 0.084 mmol) was added and the flushing operation repeated. After 1 hour,
complete consumption of starting material was observed (the reaction was followed
by LC/MS) and Et
2O (50 mL) was added to the reaction mixture which was allowed to stir until all the
product had crashed out of solution. The solid was filtered through a sintered funnel
and washed twice with Et
2O (2 x 25 mL). The collecting flask was replaced and the isolated solid was dissolved
in CHCl
3 (100 mL or until all the product had passed through the sintered funnel). The volatiles
were then removed by rotary evaporation under reduced pressure to afford the crude
product
17 which was used directly in the next step (168 mg). LC/MS method 2 (2.70 min (ES+)
m/
z (relative intensity) 830.27 ([
M+H]
+., 50), 660.13 (80), 171.15 (100)).
(f) N-((R)-1-(((S)-1-((4-((S)-8-(3-(((S)-2-cyclopropyl-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)-1-(3-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)propanamido)-3,6,9,12,15,18,21,24-octaoxaheptacosan-27-amide
(18)
[0186] Starting material
17 (154 mg, 0.185 mmol) and EDCl.HCl (110 mg, 0.185 mmol) were solubilised in dry CH
2Cl
2 (5 mL) in a round bottom flask purged and filled with argon. The mixture was left
to stir at room temperature for 1 hour before PEG
8-maleimide (35.6 mg, 0.185 mmol) was added and the reaction mixture stirred for a
further 16 hours (or until the reaction is complete, monitered by LC/MS). The reaction
solution was diluted with CH
2Cl
2 (50 mL) and the organics were washed with H
2O (50 mL) and brine (50 mL) before being dried with MgSO
4, filtered and the solvent removed by rotary evaporation under reduced pressure to
afford the crude product. Purification on silica gel column chromatography (100% CHCl
3 to 85/15 v/v CHCl
3/MeOH) gave the desired product (135mg), however remaining traces of unreacted PEG
8-maleimide were observed (by LC/MS, 2.21 min, method 2). Automated reverse phase silica
gel chromatography (H
2O/CH
3CN) (see general information for conditions) successfully removed the impurity affording
pure final product (
18, 37mg of pure product starting from 110mg, 33%). Overall yield = 17%. Method 2 LC/MS
(2.58 min (ES+)
m/
z (relative intensity) 1404.03 ([
M+H]
+., 20), 702.63 (100)).
1H NMR (400 MHz, CDCl
3) δ 7.91 (t,
J = 3.5 Hz, 1H), 7.80 (d,
J = 4.0 Hz, 1H), 7.75 (d,
J = 8.8 Hz, 1H), 7.69 (d,
J = 8.7 Hz, 1H), 7.54 - 7.50 (m, 2H), 7.45 (s, 1H), 7.39 - 7.31 (m, 2H), 6.87 (d,
J = 10.5 Hz, 2H), 6.76 (s, 1H), 6.72 - 6.68 (m, 2H), 4.74 - 4.62 (m, 1H), 4.45 - 4.17
(m, 7H), 3.95 (s, 3H), 3.94 (s, 3H), 3.67 - 3.58 (m, 34H), 3.54 (m, 2H), 3.42 (dd,
J = 10.2, 5.2 Hz, 2H), 3.16 - 3.07 (m, 1H), 2.92 (dd,
J = 16.1, 4.1 Hz, 1H), 2.62 - 2.49 (m, 4H), 2.48 - 2.39 (m, 2H), 2.37 - 2.25 (m, 1H),
1.92 (s, 1H), 1.52 - 1.44 (m, 3H), 1.10 - 0.93 (m, 6H), 0.79 (dd,
J = 9.2, 5.3 Hz, 2H), 0.57 (dd,
J = 9.2, 5.3 Hz, 2H), NH were not observed.
Example 2
[0187]

(a) (R)-2-((R)-2-((((9H-fluoren-9-yl)methoxy)carbonyl)amino)-3-methylbutanamido) propanoic
acid (20b)
[0188] HO-Ala-Val-H
20a (350 mg, 1.86 mmol) and Na
2CO
3 (493 mg, 4.65 mmol) were dissolved in distilled H
2O (15 mL) and the mixture was cooled to 0°C before dioxane (15 mL) was added (partial
precipitation of the amino acid salt occurred). A solution of Fmoc-Cl (504 mg, 1.95
mmol) in dioxane (15 mL) was added dropwise with vigorous stirring over 10 minutes.
The resulting mixture was stirred at 0°C for 2 hours before the ice bath was removed
and stirring was maintained for 16 hours. The solvent was removed by rotary evaporation
under reduced pressure and the residue dissolved in water (150 mL). The pH was adjusted
from 9 to 2 with 1N HCI and the aqueous layer was subsequently extracted with EtOAc
(3x100 mL). The combined organics were washed with brine (100 mL), dried with MgSO
4, filtered and the volatiles removed by rotary evaporation under reduced pressure
to afford pure HO-Ala-Val-Fmoc
20b (746 mg, 97% yield). LC/MS 2.85 min (ES+)
m/
z (relative intensity) 410.60 ;
1H-NMR (400 MHz, CDCl
3) δ 7.79 (d,
J=7.77 Hz, 2H), 7.60(d,
J=7.77 Hz, 2H), 7.43(d,
J=7.5 Hz, 2H), 7.34 (d,
J=7.5 Hz, 2H), 6.30 (bs, 1H), 5.30 (bs, 1H), 4.71-7.56 (m, 1H), 4.54-4.36 (m, 2H),
4.08-3.91 (m, 1H), 2.21-2.07 (m, 1H), 1.50 (d,
J=7.1 Hz, 3H), 1.06-0.90 (m, 6H).
(b) (9H-fluoren-9-yl)methyl ((S)-3-methyl-1-oxo-1-(((S)-1-oxo-1-((4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)amino)propan-2-yl)amino)butan-2-yl)carbamate
(20)
[0189] 4-Aminophenylboronic acid pinacol ester was added (146.9 mg, 0.67 mmol) was added
to a solution of HO-Ala-Val-Fmoc
20b (330mg, 0.8 mmol), DCC (166 mg, 0.8 mmol) and DMAP (5 mg, cat.) in dry DCM (8 mL)
previously stirred for 30 minutes at room temperature in a flask flushed with argon.
The reaction mixture was then allowed to stir at room temperature overnight. The reaction
was followed by LCMS and TLC. The reaction mixture was diluted with CH
2Cl
2 and the organics were washed with H
2O and brine before being dried with MgSO
4, filtered and the solvent removed by rotary evaporation under reduced pressure. The
crude product was dryloaded on a silicagel chromatography column (Hexane/EtOAc, 6:4)
and pure product
20 was isolated as a white solid in 88% yield (360 mg).
(c) 8-(3-((2-(4-((S)-2-((S)-2-((((9H-fluoren-9-yl)methoxy)carbonyl)amino)-3-methylbutanamido)propanamido)phenyl)-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl
trifluoromethanesulfonate (21)
[0190] Bis-triflate
12 (2.03g, 1.81 mmol), boronic pinacol ester (1g, 1.63 mmol) and Na
2CO
3 (881 mg, 8.31 mmol) were dissolved in a mixture of toluene/MeOH/H
2O, 2:1:1 (40 mL). The reaction flask was purged and filled with argon three times
before
tetrakis(triphenylphosphine)palladium(0) (41 mg, 0.035 mmol) was added and the reaction mixture
heated to 30°C overnight. The solvents were removed under reduce pressure and the
residue was taken up in H
2O (100 mL) and extracted with EtOAc (3 x 100 mL). The combined organics were washed
with brine (100 mL), dried with MgSO
4, filtered and the volatiles removed by rotary evaporation under reduced pressure.
The crude product was purified by silica gel chromatography column (Hexane/EtOAc,
8:2 to 25:75) to afford pure
21 in 33% yield (885 mg). LC/MS 3.85 min (ES+)
m/
z (relative intensity) 1452.90 ;
1H NMR (400 MHz, CDCl
3) δ 7.78 - 7.16 (m, 17H), 7.13 (s, 1H), 6.51 - 6.24 (m, 1H), 5.51 (dd,
J = 10.0, 5.1 Hz, 2H), 5.36 - 5.11 (m, 1H), 4.74 (dd,
J = 10.1, 4.4 Hz, 2H), 4.70 - 4.53 (m, 2H), 4.47 (d,
J = 6.4 Hz, 1H), 4.37 (d,
J = 7.2 Hz, 1H), 4.27 (m, 4H), 4.20 - 4.14 (m, 1H), 3.90 (s, 3H), 3.89 (s, 3H), 3.77
(ddd,
J = 16.7, 9.0, 6.4 Hz, 3H), 3.71 - 3.61 (m, 2H), 3.24 - 2.91 (m, 3H), 2.55 - 2.33 (m,
2H), 2.22 - 2.07 (m, 1H), 1.52 - 1.37 (m, 3H), 1.04 - 0.86 (m, 10H), 0.00 (s, 18H).
(d) (9H-fluoren-9-yl)methyl((2S)-1-(((2S)-1-((4-(8-(3-((2-cyclopropyl-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(22)
[0191] Triphenylarsine (42 mg, 0.137 mmol) was added to a mixture of PBD-triflate
21 (250 mg, 0.172 mmol), cyclopropylboronic acid (73.9 mg, 0.86 mmol), silver oxide
(159 mg, 0.688 mmol) and potassium phosphate tribasic (438 mg, 2.06 mmol) in dry dioxane
(10 mL) under an argon atmosphere. The reaction was flushed with argon 3 times and
bis(benzonitrile)palladium(II) chloride (13.2 mg, 0.034 mmol) was added. The reaction
was flushed with Argon 3 more times before being warmed to 75°C and stirred for 10
minutes. The reaction mixture was filtered through a pad of celite which was subsequently
rinsed with ethyl acetate. The solvent was removed by rotary evaporation under reduced
pressure. The resulting residue was subjected to flash column chromatography (silica
gel; 1 % methanol/chloroform). Pure fractions were collected and combined, and excess
eluent was removed by rotary evaporation under reduced pressure to afford the desired
product
22 (132 mg, 50 % yield). LC/MS 3.83 min (ES+)
m/
z (relative intensity) 1345.91 ;
1H NMR (400 MHz, CDCl
3) δ 7.88 - 7.14 (m, 17H), 6.69 (s, 1H), 6.45 - 6.25 (m, 1H), 5.57 - 5.41 (m, 2H),
5.34 - 5.14 (m, 1H), 4.78 - 4.67 (m, 2H), 4.62 - 4.55 (m, 1H), 4.50 - 4.45 (m, 2H),
4.51 - 4.44 (m, 1H), 4.31 - 4.21 (m, 4H), 4.16 (m, 1H), 3.92 (s, 3H), 3.86 (s, 3H),
3.82 - 3.71 (m, 2H), 3.66 (m, 3H), 3.40 - 3.28 (m, 1H), 3.07 (m, 1H), 2.70 - 2.57
(m, 1H), 2.47 - 2.36 (m, 2H), 2.15 (m, 1H), 1.51 - 1.40 (m, 3H), 1.03 - 0.87 (m, 11H),
0.77 - 0.71 (m, 2H), 0.60 - 0.54 (m, 2H), 0.00 (t,
J = 3.0 Hz, 18H).
(e) (9H-fluoren-9-yl)methyl((2S)-1-(((2S)-1-((4-(8-(3-((2-cyclopropyl-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(23)
[0192] A solution of Super-Hydride® (0.5 mL, 1M in THF) was added dropwise to a solution
of SEM dilactam
22 (265 mg g, 0.19 mmol) in THF (10 mL) at -78°C under an argon atmosphere. The addition
was completed over 5 minutes in order to maintain the internal temperature of the
reaction mixture constant. After 20 minutes, an aliquot was quenched with water for
LC/MS analysis, which revealed that the reaction was complete. Water (20 mL) was added
to the reaction mixture and the cold bath was removed. The organic layer was extracted
with EtOAc (3 x 30 mL) and the combined organics were washed with brine (50 mL), dried
with MgSO
4, filtered and the solvent removed by rotary evaporation under reduced pressure. The
crude product was dissolved in MeOH (12 mL), CH
2Cl
2 (6 mL), water (2 mL) and enough silica gel to form a thick stirring suspension. After
5 days, the suspension was filtered through a sintered funnel and washed with CH
2Cl
2/MeOH (9:1) (200 mL) until the elution of the product was complete. The organic layer
was washed with brine (2 x 70 mL), dried with MgSO
4, filtered and the solvent removed by rotary evaporation under reduced pressure. Purification
by silica gel column chromatography (100% CHCl
3 to 96% CHCl
3/ 4% MeOH) afforded the product
23 as a yellow solid (162 mg, 78%). LC/MS 3.02 min (ES+)
m/
z (relative intensity) 1052.37.
(f) (2S)-2-amino-N-((2S)-1-((4-(8-(3-((2-cyclopropyl-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide
(17)
[0193] Excess piperidine was added (0.2 mL, 2 mmol) to a solution of SEM-dilactam
23 (76 mg, 0.073 mmol) in DMF (1 mL). The mixture was allowed to stir at room temperature
for 20 min, at which point the reaction had gone to completion (as monitored by LC/MS).
The reaction mixture was diluted with CH
2Cl
2 (75 mL) and the organic phase was washed with H
2O (3x75 mL) until complete piperidine removal. The organic phase was dried over MgSO
4, filtered and excess solvent removed by rotary evaporation under reduced pressure
to afford crude product
17 which was used as such in the next step. LC/MS 2.32 min (ES+)
m/
z (relative intensity) 830.00.
(g) N-((2S)-1-(((2S)-1-((4-(8-(3-((2-cyclopropyl-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)-1-(3-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)propanamido)-3,6,9,12,15,18,21,24-octaoxaheptacosan-27-amide
(18)
[0194] EDCI hydrochloride (14 mg, 0.0732 mmol) was added to a suspension of Maleimide-PEG
8-acid (43.4 mg, 0.0732 mmol) in dry CH
2Cl
2 (5 mL) under argon atmosphere. The mixture was stirred for 1 hour at room temperature
before PBD
17 (60.7 mg, 0.0732 mmol) was added. Stirring was maintained until the reaction was
complete (usually 5 hours). The reaction was diluted with CH
2Cl
2 and the organic phase was washed with H
2O and brine before being dried over MgSO
4, filtered and excess solvent removed by rotary evaporation under reduced pressure
by rotary evaporation under reduced pressure. The product was purified by careful
silica gel chromatography (slow elution starting with 100% CHCl
3 up to 9:1 CHCl
3/MeOH) followed by reverse phase chromatography to remove unreacted maleimide-PEG
8-acid. The product
18 was isolated in 17.6% (21.8 mg). LC/MS 2.57 min (ES+)
m/
z (relative intensity) 1405.30 ;
1H NMR (400 MHz, CDCl
3) δ 7.91 (t,
J = 3.5 Hz, 1H), 7.80 (d,
J = 4.0 Hz, 1H), 7.75 (d,
J = 8.8 Hz, 1H), 7.69 (d,
J = 8.7 Hz, 1H), 7.54 - 7.50 (m, 2H), 7.45 (s, 1H), 7.39 - 7.31 (m, 2H), 6.87 (d,
J = 10.5 Hz, 2H), 6.76 (s, 1H), 6.72 - 6.68 (m, 2H), 4.74 - 4.62 (m, 1H), 4.45 - 4.17
(m, 7H), 3.95 (s, 3H), 3.94 (s, 3H), 3.67 - 3.58 (m, 34H), 3.54 (m, 2H), 3.42 (dd,
J = 10.2, 5.2 Hz, 2H), 3.16 - 3.07 (m, 1H), 2.92 (dd,
J = 16.1, 4.1 Hz, 1H), 2.62 - 2.49 (m, 4H), 2.48 - 2.39 (m, 2H), 2.37 - 2.25 (m, 1H),
1.92 (s, 1H), 1.52 - 1.44 (m, 3H), 1.10 - 0.93 (m, 6H), 0.79 (dd,
J = 9.2, 5.3 Hz, 2H), 0.57 (dd,
J = 9.2, 5.3 Hz, 2H), NH were not observed.
Example 3
[0195]

(a) (S)-7-methoxy-8-(3-(((S)-7-methoxy-2-(4-(4-methylpiperazin-1-yl)phenyl)-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl
trifluoromethanesulfonate (24)
[0196] Pd(PPh
3)
4 (20.6 mg, 0.018 mmol) was added to a stirred mixture of the bis-enol triflate
12 (500 mg, 0.44 mmol), N-methyl piperazine boronic ester (100 mg, 0.4 mmol), Na
2CO
3 (218 mg, 2.05 mmol), MeOH (2.5 mL), toluene (5 mL) and water (2.5 mL). The reaction
mixture was allowed to stir at 30°C under a nitrogen atmosphere for 24 hours after
which time all the boronic ester has consumed. The reaction mixture was then evaporated
to dryness before the residue was taken up in EtOAc (100 mL) and washed with H
2O (2 x 50 mL), brine (50 mL), dried (MgSO
4), filtered and evaporated under reduced pressure to provide the crude product. Purification
by flash chromatography (gradient elution: 80:20 v/v Hexane/EtOAc to 60:40 v/v Hexane/EtOAc)
afforded product
24 as a yellowish foam (122.6 mg, 25%). LC/MS 3.15 min (ES+)
m/
z (relative intensity) 1144 ([
M + H]
+., 20%).
(b) (9H-fluoren-9-yl)methyl ((S)-1-(((S)-1-((4-((S)-7-methoxy-8-(3-(((S)-7-methoxy-2-(4-(4-methylpiperazin-1-yl)phenyl)-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(25)
[0197] PBD-triflate
24 (359 mg, 0.314 mmol), boronic pinacol ester
20 (250 mg, 0.408 mmol) and triethylamine (0.35 mL, 2.51 mmol) were dissolved in a mixture
of toluene/MeOH/H
2O, 2:1:1 (3 mL). The microwave vessel was purged and filled with argon three times
before
tetrakis(triphenylphosphine)palladium(0) (21.7 mg, 0.018 mmol) was added and the reaction
mixture placed in the microwave at 80°C for 10 minutes. Subsequently, CH
2Cl
2 (100 mL) was added and the organics were washed with water (2 x 50 mL) and brine
(50 mL) before being dried with MgSO
4, filtered and the volatiles removed by rotary evaporation under reduced pressure.
The crude product was purified by silica gel chromatography column (CHCl
3/MeOH, 100% to 9:1) to afford pure
25 (200 mg, 43% yield). LC/MS 3.27 min (ES+)
m/
z (relative intensity) 1478 ([
M + H]
+., 100%).
(c) (9H-fluoren-9-yl)methyl ((S)-1-(((S)-1-((4-((S)-7-methoxy-8-(3-(((S)-7-methoxy-2-(4-(4-methylpiperazin-1-yl)phenyl)-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(26)
[0198] A solution of Super-Hydride® (0.34 mL, 1M in THF) was added dropwise to a solution
of SEM-dilactam
25 (200 mg, 0.135 mmol) in THF (5 mL) at -78°C under an argon atmosphere. The addition
was completed over 5 minutes in order to maintain the internal temperature of the
reaction mixture constant. After 20 minutes, an aliquot was quenched with water for
LC/MS analysis, which revealed that the reaction was complete. Water (20 mL) was added
to the reaction mixture and the cold bath was removed. The organic layer was extracted
with EtOAc (3 x 30 mL) and the combined organics were washed with brine (50 mL), dried
with MgSO
4, filtered and the solvent removed by rotary evaporation under reduced pressure. The
crude product was dissolved in MeOH (6 mL), CH
2Cl
2 (3 mL), water (1 mL) and enough silica gel to form a thick stirring suspension. After
5 days, the suspension was filtered through a sintered funnel and washed with CH
2Cl
2/MeOH (9:1) (100 mL) until the elution of the product was complete. The organic layer
was washed with brine (2 x 50 mL), dried with MgSO
4, filtered and the solvent removed by rotary evaporation under reduced pressure. Purification
by silica gel column chromatography (100% CHCl
3 to 96% CHCl
3/ 4% MeOH) afforded the product
26 as a yellow solid (100 mg, 63%). LC/MS 2.67 min (ES+)
m/
z (relative intensity) 1186 ([
M + H]
+., 5%).
(d) (S)-2-amino-N-((S)-1-((4-((R)-7-methoxy-8-(3-(((R)-7-methoxy-2-(4-(4-methylpiperazin-1-yl)phenyl)-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide
(27)
[0199] Excess piperidine was added (0.1 mL, 1 mmol) to a solution of PBD
26 (36.4 mg, 0.03 mmol) in DMF (0.9 mL). The mixture was allowed to stir at room temperature
for 20 min, at which point the reaction had gone to completion (as monitored by LC/MS).
The reaction mixture was diluted with CH
2Cl
2 (50 mL) and the organic phase was washed with H
2O (3 x 50 mL) until complete piperidine removal. The organic phase was dried over
MgSO
4, filtered and excess solvent removed by rotary evaporation under reduced pressure
to afford crude product
27 which was used as such in the next step. LC/MS 2.20 min (ES+)
m/
z (relative intensity) 964 ([
M + H]
+., 5%).
(e) 6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-N-((S)-1-(((S)-1-((4-((S)-7-methoxy-8-(3-(((S)-7-methoxy-2-(4-(4-methylpiperazin-1-yl)phenyl)-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)hexanamide
(28)
[0200] EDCI hydrochloride (4.7 mg, 0.03 mmol) was added to a suspension of 6-maleimidohexanoic
acid (6.5 mg, 0.03 mmol) in dry CH
2Cl
2 (3 mL) under argon atmosphere. The mixture was stirred for 1 hour at room temperature
before PBD
27 (34 mg, crude) was added. Stirring was maintained until the reaction was complete
(6 hours). The reaction was diluted with CH
2Cl
2 and the organic phase was washed with H
2O and brine before being dried over MgSO
4, filtered and excess solvent removed by rotary evaporation under reduced pressure
by rotary evaporation under reduced pressure. The product was purified by careful
silica gel chromatography (slow elution starting with 100% CHCl
3 up to 9:1 CHCl
3/MeOH) followed by reverse phase chromatography to remove unreacted maleimide-PEG
8-acid. The product
28 was isolated in 41% over two steps (14.6 mg). LC/MS 2.40 min (ES+)
m/
z (relative intensity) 1157 ([
M + H]
+., 5%)
Example 4 - alternative synthesis of compound 25
[0201]

[0202] PBD-triflate
21 (469 mg, 0.323 mmol), boronic pinacol ester (146.5 mg, 0.484 mmol) and Na
2CO
3 (157 mg, 1.48 mmol) were dissolved in a mixture of toluene/MeOH/H
2O, 2:1:1 (10 mL). The reaction flask was purged with argon three times before
tetrakis(triphenylphosphine)palladium(0) (7.41 mg, 0.0064 mmol) was added and the reaction
mixture heated to 30°C overnight. The solvents were removed under reduced pressure
and the residue was taken up in H
2O (50 mL) and extracted with EtOAc (3 x 50 mL). The combined organics were washed
with brine (100 mL), dried with MgSO
4, filtered and the volatiles removed by rotary evaporation under reduced pressure.
The crude product was purified by silica gel column chromatography (CHCl
3 100% to CHCl
3/MeOH 95%:5%) to afford pure
25 in 33% yield (885 mg). LC/MS 3.27 min (ES+)
m/
z (relative intensity) 1478 ([
M + H]
+., 100%).
Example 5
[0203]

(a) (S)-2-(4-Aminophenyl)-8-(3-(((S)-2-(benzo[d][1,3]dioxol-5-yl)-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-7-methoxy-10-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,1-c][1,4]benzodiazepine-5,11(10H,11aH)-dione
(29)
[0204] 3, 4-(Methylenedioxy)phenyl boronic acid (356 mg, 2.1 mmol, 1.3 equiv.), TEA (1.8
mL, 12.9 mmol, 8 equiv.) and triflate/aniline
13 (1.75 g, 1.7 mmol, 1 equiv.) were dissolved in a mixture of ethanol (7 mL), toluene
(13 mL) and water (2 mL) under an Ar atmosphere. The reaction mixture was evacuated
and flushed with Ar 3 times, before addition of
tetrakis(triphenylphosphine)palladium(0) (114 mg, 0.1 mmol, 0.06 equiv.). The flask was again
evacuated and flushed with Ar 3 times and heated in a microwave at 80°C for 8 minutes
with 30 seconds pre-stirring time. Analysis by TLC (80:20 v/v ethyl acetate/hexane)
indicated complete consumption of starting material. The reaction mixture was diluted
with dichloromethane (50 mL) and washed with water (50 mL). The organic layer was
dried with MgSO
4, filtered and the solvent removed
in vacuo. Purification by silica gel column chromatography (60:40 to 20:80 v/v hexane/ ethyl
acetate) afforded the product
29 as a yellow solid (1.21 g, 71%). LC/MS (3.92 min (ES
+)
m/
z (relative intensity) 1032.44 ([
M + H]
+., 100).
(b) (S)-2-(4-Aminophenyl)-8-(3-(((S)-2-(benzo[d][1,3]dioxol-5-yl)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-7-methoxy-1H-pyrrolo[2,1-c][1,4]benzodiazepin-5(11aH)-one
(30)
[0205] SEM dilactam
29 (0.25 g, 0.24 mmol, 1 equiv.) was dissolved in THF (8 mL) and cooled to -78°C under
an Ar atmosphere. Super-Hydride® (0.6 mL, 1 M in THF, 2.5 equiv.) was added drop wise
over 5 minutes while monitoring the temperature. After 20 minutes a small sample was
taken and worked-up for LCMS analysis. Water (50 mL) was added, the cold bath was
removed and the solution washed with ethyl acetate (50 mL). The organic layer was
extracted and washed with brine (60 mL), dried with MgSO
4, filtered and the solvent removed
in vacuo. The crude product was dissolved in EtOH (15 mL), CH
2Cl
2 (7.5 mL) and water (2.5 mL) and enough silica gel was added until it was a thick
suspension. After 5 days stirring, it was filtered through a sintered funnel and washed
with CH
2Cl
2/MeOH (9:1) (100 mL) until product ceased to be eluted. The organic layer was washed
with brine (2 x 50 mL), dried with MgSO
4, filtered and the solvent removed
in vacuo. Purification by silica gel column chromatography (CHCl
3 with 1% to 4% MeOH gradient) afforded the product
30 as a yellow solid (94 mg, 53%). LC/MS (2.53 min (ES
+)
m/
z (relative intensity) 739.64 ([
M]
+., 70).
(c) Allyl ((S)-1-(((S)-1-((4-((S)-8-(3-(((S)-2-(benzo[d][1,3]dioxol-5-yl)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(31)
[0206] Under an Ar atmosphere, Alanine-Valine-Alloc (180 mg, 0.66 mmol, 1.2 equiv.) was
stirred with EEDQ (163 mg, 0.66 mmol, 1.2 equiv.) in anhydrous CH
2Cl
2 (21 mL) and methanol (1 mL) for 1 hour. The PBD
30 (407 mg, 0.55 mmol, 1 equiv.) was dissolved in anhydrous CH
2Cl
2 (21 mL) and methanol (1 mL) and added to the reaction. LC/MS after 5 days stirring
at room temperature showed majority product formation. The solvent was removed
in vacuo before purification by column chromatography (CH
2Cl
2 with 1% to 6% MeOH gradient) to yield the product
31 as a yellow solid (184 mg, 34%). LC/MS (2.95 min (ES
+)
m/
z (relative intensity) 994.95 ([
M + H]
+., 60).
(d) (S)-2-Amino-N-((S)-1-((4-((S)-8-(3-(((S)-2-(benzo[d][1,3]dioxol-5-yl)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)-3
methylbutanamide (32)
[0207] The imine
31 (100 mg, 0.1 mmol, 1 equiv.) was dissolved in anhydrous DCM (10 mL) (with the aid
of one drop of methanol to aid dissolution) under an Ar atmosphere. Pyrrolidine (30
µL, 0.15 mmol, 1.5 equiv.) was added drop wise before the flask was evacuated and
flushed with Ar three times. Pd(PPh
3)
4 (7 mg, 6 µmol, 0.06 equiv.) was added and the flask was evacuated and flushed with
Ar three times. LC/MS analysis after 1 hour indicated product formation and complete
loss of starting material. Et
2O (60 mL) was added to the reaction mixture and it was left to stir until all the
product had crashed out of solution. The precipitate was filtered through a sintered
funnel and washed twice with Et
2O (2 x 20 mL). The collection flask was replaced and the isolated solid was dissolved
and washed through the sinter with CHCl
3 (100 mL). The solvent was removed
in vacuo to afford the crude product
32 as a yellow solid which was used directly in the next step. LC/MS (1.14 min (ES
+)
m/
z (relative intensity) 910.40 ([
M + H]
+., 67).
(e) N-((S)-1-(((S)-1-((4-((S)-8-(3-(((S)-2-(Benzo[d][1,3]dioxol-5-yl)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yI)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)-1-(3-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)propanamido)-3,6,9,12,15,18,21,24-octaoxaheptacosan-27-amide
(33)
[0208] The imine
32 (92 mg, 0.1 mmol, 1.1 equiv.) was dissolved in CHCl
3 (6 mL) with one drop of anhydrous MeOH to aid dissolution. Maleimide-PEG
8-acid (53 mg, 0.09 mmol, 1 equiv.) was added followed by EEDQ (33 mg, 0.14 mmol, 1.5
equiv.). This was left to stir vigorously at room temperature under Ar for 4 days
until LC/MS analysis showed majority product formation. The solvent was removed in
vacuo and the crude product was partially purified by silica gel column chromatography
(CHCl3 with 1% to 10% MeOH gradient) yielding
33 (81mg). The material was purified further by preparative HPLC to give
33 as a yellow solid (26.3 mg, 18%). Fast Formic run: LC/MS (1.39 min (ES+) m/z (relative
intensity) 1485.00 ([M + H]+., 64).
Example 6
[0209]

(a) 9H-Fluoren-9-yl)methyl ((S)-1-(((S)-1-((4-((S)-8-(3-(((S)-2-(benzo[d][1,3]dioxol-5-yl)-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-7-methoxy-5,11-dioxo-10-((2-(trimethylsilyl)ethoxy)methyl)-5,10,11,11a-tetrahydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(34)
[0210] The triflate
21 (0.5 g, 0.35 mmol, 1 equiv.), 3, 4-(methylenedioxy)phenyl boronic acid (75 mg, 0.45
mmol, 1.3 equiv.) and Na
2CO
3(0.17 g, 1.6 mmol, 4.5 equiv.) were dissolved in toluene (11 mL), EtOH (5.5 mL) and
water (5.5 mL) under an Ar atmosphere. The flask was evacuated and flushed with Ar
three times. Pd(PPh
3)
4 (24 mg, 0.02 mmol, 0.06 equiv.) was added and again the flask was evacuated and flushed
with Ar three times. This was heated to 30°C and left stirring overnight. Analysis
by LC/MS showed complete loss of starting material. The solvent was removed
in vacuo and the residue dissolved in water (60 mL) before washing with ethyl acetate (60
mL x 3). The combined organic layers were washed with brine (50 mL), dried with MgSO
4, filtered and the solvent removed
in vacuo. Purification by column chromatography (50:50 to 25:75 v/v hexane/ ethyl acetate)
afforded the product
34 as a yellow solid (310 mg, 64%). LC/MS (1.44 min (ES
-)
m/
z (relative intensity) 1423.35 ([
M-H]
-., 79).
(b) (9H-Fluoren-9-yl)methyl ((S)-1-(((S)-1-((4-((S)-8-(3-(((S)-2-(benzo[d][1,3]dioxol-5-yl)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(35)
[0211] SEM dilactam
34 (0.31 g, 0.22 mmol, 1 equiv.) was dissolved in THF (10 mL) and cooled to -78°C under
an Ar atmosphere. Super-Hydride® (0.5 mL, 1 M in THF, 2.5 equiv.) was added drop wise
over 5 minutes while monitoring the temperature. After 30 minutes a small sample was
taken and worked-up for LC/MS analysis. Water (50 mL) was added, the cold bath was
removed and the solution washed with ethyl acetate (50 mL). The organic layer was
extracted and washed with brine (60 mL), dried with MgSO
4, filtered and the solvent removed
in vacuo. The crude product was dissolved in EtOH (13.2 mL), CH
2Cl
2 (6.6 mL) and water (2.2 mL) and enough silica gel was added until it was a thick
suspension. After 5 days stirring, it was filtered through a sintered funnel and washed
with CH
2Cl
2/MeOH (9:1) (100 mL) until product ceased to be eluted. The organic layer was washed
with brine (2 x 50 mL), dried with MgSO
4, filtered and the solvent removed
in vacuo. Purification by silica gel column chromatography (CHCl
3 with 1% to 4% MeOH gradient) afforded the pure product
35 as a yellow solid (185 mg, 75%). LC/MS (1.70 min (ES
+)
m/
z (relative intensity) 1132.85 ([
M + H]
+., 60).
(c) (S)-2-Amino-N-((S)-1-((4-((S)-8-(3-(((S)-2-(benzo[d][1,3]dioxol-5-yl)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-8-yl)oxy)propoxy)-7-methoxy-5-oxo-5,11a-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepin-2-yl)phenyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide
(32)
[0212] The imine
35 (82 mg, 0.07 mmol, 1 equiv.) was dissolved in DMF (1 mL) before piperidine (0.2 mL,
2 mmol, excess) was added slowly. This solution was left to stir at room temperature
for 20 minutes until LC/MS analysis showed complete consumption of starting material.
The reaction mixture was diluted with CH
2Cl
2 (50 mL), washed with water (50 mL x 4), dried with MgSO
4, filtered and the solvent removed
in vacuo. The product
33 was used without further purification in the next step. LC/MS (1.15 min (ES
+)
m/
z (relative intensity) 910.60 ([
M + H]
+., 58).
Example 7
(i) (S)-(2-amino-5-methoxy-4-((triisopropylsilyl)oxy)phenyl)(2-(((tertbutyldimethylsilyl)oxy)methyl)-4-methyl-2,3-dihydro-1H-pyrrol-1-yl)methanone
(49)
[0213]

(a) 5-methoxy-2-nitro-4-((triisopropylsilyl)oxy)benzaldehyde (42)
[0214] Neat triisopropylsilylchloride (56.4 mL, 262 mmol) was added to a mixture of imidazole
(48.7 g, 715.23 mmol) and 4-hydroxy-5-methoxy-2-nitrobenzaldehyde
41 (47 g, 238 mmol) (ground together). The mixture was heated until the phenol and imidazole
melted and went into solution (100 °C). The reaction mixture was allowed to stir for
15 minutes and was then allowed to cool, whereupon a solid was observed to form at
the bottom of the flask (imidazole chloride). The reaction mixture was diluted with
5% EtOAc/ hexanes and loaded directly onto silica gel and the pad was eluted with
5% EtOAc/ hexanes , followed by 10% EtOAc/hexanes (due to the low excess, very little
unreacted TIPSCI was found in the product). The desired product was eluted with 5
% ethyl acetate in hexane. Excess eluent was removed by rotary evaporation under reduced
pressure, followed by drying under high vacuum to afford a crystalline light sensitive
solid (74.4 g, 88 %). Purity satisfactory by LC/MS (4.22 min (ES+)
m/
z (relative intensity) 353.88 ([
M + H]
+., 100));
1H NMR (400 MHz, CDCl
3) δ 10.43 (s, 1H), 7.60 (s, 1H), 7.40 (s, 1H), 3.96 (s, 3H), 1.35 - 1.24 (m, 3H),
1.10 (m, 18H).
(b) 5-methoxy-2-nitro-4-((triisopropylsilyl)oxy)benzoic acid (43)
[0215] A solution of sodium chlorite (47.3 g, 523 mmol, 80 % technical grade) and sodium
dihydrogenphosphate monobasic (35.2 g, 293 mmol) (NaH
2PO
4) in water (800 mL) was added to a solution of compound
2 (74 g, 209 mmol) in tetrahydrofuran (500 mL) at room temperature. Hydrogen peroxide
(60 % w/w, 140 mL, 2.93 mol) was immediately added to the vigorously stirred biphasic
mixture. The reaction mixture evolved gas (oxygen), the starting material dissolved
and the temperature of the reaction mixture rose to 45°C. After 30 minutes LC/MS revealed
that the reaction was complete. The reaction mixture was cooled in an ice bath and
hydrochloric acid (1 M) was added to lower the pH to 3 (this step was found unnecessary
in many instances, as the pH at the end of the reaction is already acidic; please
check the pH before extraction). The reaction mixture was then extracted with ethyl
acetate (1 L) and the organic phases washed with brine (2 x 100 mL) and dried over
magnesium sulphate. The organic phase was filtered and excess solvent removed by rotary
evaporation under reduced pressure to afford the product
43 in quantitative yield as a yellow solid. LC/MS (3.93 min (ES-)
m/
z (relative intensity) 367.74 ([
M - H]
-., 100));
1H NMR (400 MHz, CDCl
3) δ 7.36 (s, 1H), 7.24 (s, 1H), 3.93 (s, 3H), 1.34 - 1.22 (m, 3H), 1.10 (m, 18H).
(c) ((2S,4R)-2-(((tert-butyldimethylsilyl)oxy)methyl)-4-hydroxypyrrolidin-1-yl)(5-methoxy-2-nitro-4-((triisopropylsilyl)oxy)phenyl)methanone
(45)
[0216] DCC (29.2 g, 141 mmol, 1.2 eq) was added to a solution of acid
3 (43.5 g, 117.8 mmol, 1eq), and hydroxybenzotriazole hydrate (19.8 g, 129.6 mmol,
1.1 eq) in dichloromethane (200 mL) at 0 °C. The cold bath was removed and the reaction
was allowed to proceed for 30 mins at room temperature, at which time a solution of
(
2S,4R)-2-
t-butyldimethylsilyloxymethyl-4-hydroxypyrrolidine
44 (30 g, 129.6 mmol, 1.1 eq) and triethylamine (24.66 mL, 176 mmol, 1.5 eq) in dichloromethane
(100 mL) was added rapidly at -10 °C under argon (on large scale, the addition time
could be shortened by cooling the reaction mixture even further. The reaction mixture
was allowed to stir at room temperature for 40 minutes to 1 hour and monitored by
LC/MS and TLC (EtOAc). The solids were removed by filtration over celite and the organic
phase was washed with cold aqueous 0.1 M HCI until the pH was measured at 4 or 5.
The organic phase was then washed with water, followed by saturated aqueous sodium
bicarbonate and brine. The organic layer was dried over magnesium sulphate, filtered
and excess solvent removed by rotary evaporation under reduced pressure. The residue
was subjected to column flash chromatography (silica gel; gradient 40/60 ethyl acetate/hexane
to 80/20 ethyl acetate/ hexane). Excess solvent was removed by rotary evaporation
under reduced pressure afforded the pure product
45, (45.5 g of pure product 66%, and 17 g of slightly impure product, 90% in total).
LC/MS 4.43 min (ES+)
m/
z (relative intensity) 582.92 ([
M + H]
+., 100);
1H NMR (400 MHz, CDCl
3) δ 7.66 (s, 1H), 6.74 (s, 1H), 4.54 (s, 1H), 4.40 (s, 1H), 4.13 (s, 1H), 3.86 (s,
3H), 3.77 (d,
J = 9.2 Hz, 1H), 3.36 (dd,
J = 11.3, 4.5 Hz, 1H), 3.14 - 3.02 (m, 1H), 2.38 - 2.28 (m, 1H), 2.10 (ddd,
J = 13.3, 8.4, 2.2 Hz, 1H), 1.36 - 1.19 (m, 3H), 1.15 - 1.05 (m, 18H), 0.91 (s, 9H),
0.17 - 0.05 (m, 6H), (presence of rotamers).
(d) (S)-5-(((tert-butyldimethylsilyl)oxy)methyl)-1-(5-methoxy-2-nitro-4-((triisopropylsilyl)oxy)benzoyl)pyrrolidin-3-one
(46)
[0217] TCCA (8.82 g, 40 mmol, 0.7 eq) was added to a stirred solution of
45 (31.7 g, 54 mmol, 1 eq) and TEMPO (0.85 g, 5.4 mmol, 0.1 eq) in dry dichloromethane
(250 mL) at 0 °C. The reaction mixture was vigorously stirred for 20 minutess, at
which point TLC (50/50 ethyl acetate/hexane) revealed complete consumption of the
starting material. The reaction mixture was filtered through celite and the filtrate
washed with aqueous saturated sodium bicarbonate (100 mL), sodium thiosulphate (9
g in 300 mL), brine (100 mL) and dried over magnesium sulphate. Rotary evaporation
under reduced pressure afforded product
46 in quantitative yield. LC/MS 4.52 min (ES+)
m/
z (relative intensity) 581.08 ([
M + H]
+., 100);
1H NMR (400 MHz, CDCl
3) δ 7.78 - 7.60 (m, 1H), 6.85 - 6.62 (m, 1H), 4.94 (dd,
J = 30.8, 7.8 Hz, 1H), 4.50 - 4.16 (m, 1H), 3.99 - 3.82 (m, 3H), 3.80 - 3.34 (m, 3H),
2.92 - 2.17 (m, 2H), 1.40 - 1.18 (m, 3H), 1.11 (t,
J = 6.2 Hz, 18H), 0.97 - 0.75 (m, 9H), 0.15 - -0.06 (m, 6H), (presence of rotamers).
(e) (S)-5-(((tert-butyldimethylsilyl)oxy)methyl)-1-(5-methoxy-2-nitro-4-((triisopropylsilyl)oxy)benzoyl)-4,5-dihydro-1H-pyrrol-3-yl
trifluoromethanesulfonate (47)
[0218] Triflic anhydride (27.7 mL, 46.4 g, 165 mmol, 3 eq) was injected (temperature controlled)
to a vigorously stirred suspension of ketone
46 (31.9 g, 55 mmol, 1 eq) in dry dichloromethane (900 mL) in the presence of 2,6-lutidine
(25.6 mL, 23.5 g, 220 mmol, 4 eq, dried over sieves) at -50 °C (acetone/dry ice bath).
The reaction mixture was allowed to stir for 1.5 hours when LC/MS, following a mini
work-up (water/dichloromethane), revealed the reaction to be complete. Water was added
to the still cold reaction mixture and the organic layer was separated and washed
with saturated sodium bicarbonate, brine and magnesium sulphate. The organic phase
was filtered and excess solvent was removed by rotary evaporation under reduced pressure.
The residue was subjected to column flash chromatography (silica gel; 10/90 v/v ethyl
acetate/hexane), removal of excess eluent afforded the product
47 (37.6 g, 96 %) LC/MS, method 2, 4.32 min (ES+)
m/
z (relative intensity) 712.89 ([
M + H]
+., 100);
1H NMR (400 MHz, CDCl
3) δ 7.71 (s, 1H), 6.75 (s, 1H), 6.05 (d,
J = 1.8 Hz, 1H), 4.78 (dd,
J = 9.8, 5.5 Hz, 1H), 4.15 - 3.75 (m, 5H), 3.17 (ddd,
J = 16.2, 10.4, 2.3 Hz, 1H), 2.99 (ddd,
J = 16.3, 4.0, 1.6 Hz, 1H), 1.45 - 1.19 (m, 3H), 1.15 - 1.08 (m, 18H), 1.05 (s, 6H),
0.95 - 0.87 (m, 9H), 0.15 - 0.08 (m, 6H).
(f) (S)-(2-(((tert-butyldimethylsilyl)oxy)methyl)-4-methyl-2,3-dihydro-1H-pyrrol-1-yl)(5-methoxy-2-nitro-4-((triisopropylsilyl)oxy)phenyl)methanone
(48)
[0219] Triphenylarsine (1.71 g, 5.60 mmol, 0.4 eq) was added to a mixture of triflate
47 (10.00 g, 14 mmol, 1eq), methylboronic acid (2.94 g, 49.1 mmol, 3.5 eq), silver oxide
(13 g, 56 mmol, 4 eq) and potassium phosphate tribasic (17.8 g, 84 mmol, 6 eq) in
dry dioxane (80 mL) under an argon atmosphere. The reaction was flushed with argon
3 times and bis(benzonitrile)palladium(II) chloride (540 mg, 1.40 mmol, 0.1 eq) was
added. The reaction was flushed with argon 3 more times before being warmed instantaneously
to 110°C (the drysyn heating block was previously warmed to 110°C prior addition of
the flask). After 10 mins the reaction was cooled to room temperature and filtered
through a pad celite. The solvent was removed by rotary evaporation under reduced
pressure. The resulting residue was subjected to column flash chromatography (silica
gel; 10 % ethyl acetate / hexane). Pure fractions were collected and combined, and
excess eluent was removed by rotary evaporation under reduced pressure afforded the
product
48 (4.5 g, 55 %). LC/MS, 4.27 min (ES+)
m/
z (relative intensity) 579.18 ([
M + H]
+., 100);
1H NMR (400 MHz, CDCl
3) δ 7.70 (s, 1H), 6.77 (s, 1H), 5.51 (d,
J = 1.7 Hz, 1H), 4.77 - 4.59 (m, 1H), 3.89 (s, 3H), 2.92 - 2.65 (m, 1H), 2.55 (d,
J = 14.8 Hz, 1H), 1.62 (d,
J = 1.1 Hz, 3H), 1.40 - 1.18 (m, 3H), 1.11 (s, 9H), 1.10 (s, 9H), 0.90 (s, 9H), 0.11
(d,
J = 2.3 Hz, 6H).
(g) (S)-(2-amino-5-methoxy-4-((triisopropylsilyl)oxy)phenyl)(2-(((tertbutyldimethylsilyl)oxy)methyl)-4-methyl-2,3-dihydro-1H-pyrrol-1-yl)methanone
(49)
[0220] Zinc powder (28 g, 430 mmol, 37 eq) was added to a solution of compound
48 (6.7 g, 11.58 mmol) in 5% formic acid in ethanol v/v (70 mL) at around 15°C. The
resulting exotherm was controlled using an ice bath to maintain the temperature of
the reaction mixture below 30°C. After 30 minutes the reaction mixture was filtered
through a pad of celite. The filtrate was diluted with ethyl acetate and the organic
phase was washed with water, saturated aqueous sodium bicarbonate and brine. The organic
phase was dried over magnesium sulphate, filtered and excess solvent removed by rotary
evaporation under reduced pressure. The resulting residue was subjected to flash column
chromatography (silica gel; 10 % ethyl acetate in hexane). The pure fractions were
collected and combined and excess solvent was removed by rotary evaporation under
reduced pressure to afford the product
49 (5.1 g, 80 %). LC/MS, 4.23 min (ES+)
m/
z (relative intensity) 550.21 ([
M + H]
+., 100);
1H NMR (400 MHz, CDCl
3) δ 7.28 (s, 1H), 6.67 (s, 1H), 6.19 (s, 1H), 4.64 - 4.53 (m,
J = 4.1 Hz, 1H), 4.17 (s, 1H), 3.87 (s, 1H), 3.77 - 3.69 (m, 1H), 3.66 (s, 3H), 2.71
- 2.60 (m, 1H), 2.53 - 2.43 (m, 1H), 2.04 - 1.97 (m,
J = 11.9 Hz, 1H), 1.62 (s, 3H), 1.26 - 1.13 (m, 3H), 1.08 - 0.99 (m, 18H), 0.82 (s,
9H), 0.03 - -0.03 (m,
J = 6.2 Hz, 6H).
(ii) (11S,11aS)-allyl 11-((tert-butyldimethylsilyl)oxy)-8-((5-iodopentyl)oxy)-7-methoxy-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
[0221]

(a) (S)-allyl (2-(2-(((tert-butyldimethylsilyl)oxy)methyl)-4-methyl-2,3-dihydro-1H-pyrrole-1-carbonyl)-4-methoxy-5-((triisopropylsilyl)oxy)phenyl)carbamate
(50)
[0222] Allyl chloroformate (0.30 mL, 3.00 mmol, 1.1 eq) was added to a solution of amine
49 (1.5 g, 2.73 mmol) in the presence of dry pyridine (0.48 mL, 6.00 mmol, 2.2 eq) in
dry dichloromethane (20 mL) at -78°C (acetone/dry ice bath). After 30 minutes, the
bath was removed and the reaction mixture was allowed to warm to room temperature.
The reaction mixture was diluted with dichloromethane and saturated aqueous copper
sulphate was added. The organic layer was then washed sequentially with saturated
aqueous sodium bicarbonate and brine. The organic phase was dried over magnesium sulphate,
filtered and excess solvent removed by rotary evaporation under reduced pressure to
afford the product
50 which was used directly in the next reaction. LC/MS, 4.45 min (ES+)
m/
z (relative intensity) 632.91 ([
M + H]
+., 100)
(b) (S)-allyl (2-(2-(hydroxymethyl)-4-methyl-2,3-dihydro-1H-pyrrole-1-carbonyl)-4-methoxy-5-((triisopropylsilyl)oxy)phenyl)carbamate
(51)
[0223] The crude
50 was dissolved in a 7:1:1:2 mixture of acetic acid/methanol/tetrahydrofuran/water
(28:4:4:8 mL) and allowed to stir at room temperature. After 3 hours, complete disappearance
of starting material was observed by LC/MS. The reaction mixture was diluted with
ethyl acetate and washed sequentially with water (2 x 500 mL), saturated aqueous sodium
bicarbonate (200 mL) and brine. The organic phase was dried over magnesium sulphate
filtered and excess ethyl acetate removed by rotary evaporation under reduced pressure.
The resulting residue was subjected to flash column chromatography (silica gel, 25%
ethyl acetate in hexane). Pure fractions were collected and combined and excess eluent
was removed by rotary evaporation under reduced pressure to afford the desired product
51 (1 g, 71 %). LC/MS, 3.70 min (ES+)
m/
z (relative intensity) 519.13 ([
M + H]
+., 95);
1H NMR (400 MHz, CDCl
3) δ 8.34 (s, 1H), 7.69 (s, 1H), 6.78 (s, 1H), 6.15 (s, 1H), 5.95 (ddt,
J = 17.2, 10.5, 5.7 Hz, 1H), 5.33 (dq,
J = 17.2, 1.5 Hz, 1H), 5.23 (ddd,
J = 10.4, 2.6, 1.3 Hz, 1H), 4.73 (tt,
J = 7.8, 4.8 Hz, 1H), 4.63 (dt,
J = 5.7, 1.4 Hz, 2H), 4.54 (s, 1H), 3.89 - 3.70 (m, 5H), 2.87 (dd,
J = 16.5, 10.5 Hz, 1H), 2.19 (dd,
J = 16.8, 4.6 Hz, 1H), 1.70 (d,
J = 1.3 Hz, 3H), 1.38 - 1.23 (m, 3H), 1.12 (s, 10H), 1.10 (s, 8H).
(c) (11S, 11aS)-allyl 11-hydroxy-7-methoxy-2-methyl-5-oxo-8-((triisopropylsilyl)oxy)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(52)
[0224] Dimethyl sulphoxide (0.35 mL, 4.83 mmol, 2.5 eq) was added dropwise to a solution
of oxalyl chloride (0.2 mL, 2.32 mmol, 1.2 eq) in dry dichloromethane (10 mL) at -78°C
(dry ice /acetone bath) under an atmosphere of argon. After 10 minutes a solution
of
51 (1 g, 1.93 mmol) in dry dichloromethane (8 mL) was added slowly with the temperature
still at -78°C. After 15 min triethylamine (1.35 mL, dried over 4Å molecular sieves,
9.65 mmol, 5 eq) was added dropwise and the dry ice/acetone bath was removed. The
reaction mixture was allowed to reach room temperature and was extracted with cold
hydrochloric acid (0.1 M), saturated aqueous sodium bicarbonate and brine. The organic
phase was dried over magnesium sulphate, filtered and excess dichloromethane was removed
by rotary evaporation under reduced pressure to afford product
52 (658 mg, 66%). LC/MS, 3.52 min (ES+)
m/
z (relative intensity) 517.14 ([
M + H]
+., 100);
1H NMR (400 MHz, CDCl
3) δ 7.20 (s, 1H), 6.75 - 6.63 (m,
J = 8.8, 4.0 Hz, 2H), 5.89 - 5.64 (m,
J = 9.6, 4.1 Hz, 2H), 5.23 - 5.03 (m, 2H), 4.68 - 4.38 (m, 2H), 3.84 (s, 3H), 3.83
- 3.77 (m, 1H), 3.40 (s, 1H), 3.05 - 2.83 (m, 1H), 2.59 (d,
J = 17.1 Hz, 1H), 1.78 (d,
J = 1.3 Hz, 3H), 1.33 - 1.16 (m, 3H), 1.09 (d,
J = 2.2 Hz, 9H), 1.07 (d,
J = 2.1 Hz, 9H).
(d) (11S,11aS)-allyl 11-((tert-butyldimethylsilyl)oxy)-7-methoxy-2-methyl-5-oxo-8-((triisopropylsilyl)oxy)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(53)
[0225] Tert-butyldimethylsilyltriflate (0.70 mL, 3.00 mmol, 3 eq) was added to a solution of
compound
52 (520 mg, 1.00 mmol) and 2,6-lutidine (0.46 mL, 4.00 mmol, 4 eq) in dry dichloromethane
(40 mL) at 0°C under argon. After 10 min, the cold bath was removed and the reaction
mixture was stirred at room temperature for 1 hour. The reaction mixture was extracted
with water, saturated aqueous sodium bicarbonate and brine. The organic phase was
dried over magnesium sulphate, filtered and excess was removed by rotary evaporation
under reduced pressure. The resulting residue was subjected to flash column chromatography
(silica gel; gradient, 10 % ethyl acetate in hexane to 20 % ethyl acetate in hexane).
Pure fractions were collected and combined and excess eluent was removed by rotary
evaporation under reduced pressure to give the product
53 (540 mg, 85 %). LC/MS, 4.42 min (ES+)
m/
z (relative intensity) 653.14 ([
M + Na]
+., 100);
1H NMR (400 MHz, CDCl
3) δ 7.20 (s, 1H), 6.71 - 6.64 (m,
J = 5.5 Hz, 2H), 5.83 (d,
J = 9.0 Hz, 1H), 5.80 - 5.68 (m,
J = 5.9 Hz, 1H), 5.14 - 5.06 (m, 2H), 4.58 (dd,
J = 13.2, 5.2 Hz, 1H), 4.36 (dd,
J = 13.3, 5.5 Hz, 1H), 3.84 (s, 3H), 3.71 (td,
J = 10.1, 3.8 Hz, 1H), 2.91 (dd,
J = 16.9, 10.3 Hz, 1H), 2.36 (d,
J = 16.8 Hz, 1H), 1.75 (s, 3H), 1.31 - 1.16 (m, 3H), 1.12 - 1.01 (m,
J = 7.4, 2.1 Hz, 18H), 0.89 - 0.81 (m, 9H), 0.25 (s, 3H), 0.19 (s, 3H).
(e) (11S, 11aS)-allyl 11-((tert-butyldimethylsilyl)oxy)-8-hydroxy-7-methoxy-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(54)
[0226] Lithium acetate (87 mg, 0.85 mmol) was added to a solution of compound
53 (540 mg, 0.85 mmol) in wet dimethylformamide (6 mL, 50:1 DMF/water). After 4 hours,
the reaction was complete and the reaction mixture was diluted with ethyl acetate
(25 mL) and washed with aqueous citric acid solution (pH ∼ 3), water and brine. The
organic layer was dried over magnesium sulphate filtered and excess ethyl acetate
was removed by rotary evaporation under reduced pressure. The resulting residue was
subjected to flash column chromatography (silica gel; gradient, 25% to 75% ethyl acetate
in hexane). Pure fractions were collected and combined and excess eluent was removed
by rotary evaporation under reduced pressure to give the product
54 (400 mg, quantitative). LC/MS, (3.33 min (ES+)
m/
z (relative intensity) 475.26 ([M+H]
+, 100).
(f) (11S,11aS)-allyl 11-((tert-butyldimethylsilyl)oxy)-8-((5-iodopentyl)oxy)-7-methoxy-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(55)
[0227] Diiodopentane (0.63 mL, 4.21 mmol, 5 eq) and potassium carbonate (116 mg, 0.84 mmol,
1 eq) were added to a solution of phenol
54 (400 mg, 0.84 mmol) in acetone (4 mL, dried over molecular sieves). The reaction
mixture was then warmed to 60°C and stirred for 6 hours. Acetone was removed by rotary
evaporation under reduced pressure. The resulting residue was subjected to flash column
chromatography (silica gel; 50/50, v/v, hexane/ethyl acetate,). Pure fractions were
collected and combined and excess eluent was removed to provide
55 in 90% yield. LC/MS, 3.90 min (ES+)
m/
z (relative intensity) 670.91 ([M]
+, 100).
1H NMR (400 MHz, CDCl
3) δ 7.23 (s, 1H), 6.69 (s, 1H), 6.60 (s, 1H), 5.87 (d,
J = 8.8 Hz, 1H), 5.83 - 5.68 (m,
J = 5.6 Hz, 1H), 5.15 - 5.01 (m, 2H), 4.67 - 4.58 (m, 1H), 4.45 - 4.35 (m, 1H), 4.04
- 3.93 (m, 2H), 3.91 (s, 3H), 3.73 (td,
J = 10.0, 3.8 Hz, 1H), 3.25 - 3.14 (m,
J = 8.5, 7.0 Hz, 2H), 2.92 (dd,
J = 16.8, 10.3 Hz, 1H), 2.38 (d,
J = 16.8 Hz, 1H), 1.95 - 1.81 (m, 4H), 1.77 (s, 3H), 1.64 - 1.49 (m, 2H), 0.88 (s,
9H), 0.25 (s, 3H), 0.23 (s, 3H).
(iii) (11S,11aS)-4-(2-(1-((1-(allyloxy)-4-methyl-1,2-dioxopentan-3-yl)amino)-1-oxopropan-2-yl)hydrazinyl)benzyl
11-((tert-butyldimethylsilyl)oxy)-8-hydroxy-7-methoxy-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(70)
[0228]

(a) Allyl 3-(2-(2-(4-((((2-((S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-4-methyl-2,3-dihydro-1H-pyrrole-1-carbonyl)-4-methoxy-5-((triisopropylsilyl)oxy)phenyl)carbamoyl)oxy)methyl)phenyl)hydrazinyl)propanamido)-4-methyl-2-oxopentanoate
(56)
[0229] Triethylamine (2.23 mL, 18.04 mmol, 2.2 eq) was added to a stirred solution of the
amine
49 (4 g, 8.20 mmol) and triphosgene (778 mg, 2.95 mmol, 0.36 eq) in dry tetrahydrofuran
(40 mL) at 5 °C (ice bath). The progress of the isocyanate reaction was monitored
by periodically removing aliquots from the reaction mixture and quenching with methanol
and performing LC/MS analysis. Once the isocyanate formation was complete a solution
of the alloc-Val-Ala-PABOH (4.12 g, 12.30 mmol, 1.5 eq) and triethylamine (1.52 mL,
12.30 mmol, 1.5 eq) in dry tetrahydrofuran (40 mL) was rapidly added by injection
to the freshly prepared isocyanate. The reaction mixture was allowed to stir at 40
°C for 4 hours. Excess solvent was removed by rotary evaporation under reduced pressure.
The resulting residue was subjected to flash column chromatography (silica gel; gradient,
1 % methanol to 5% methanol in dichloromethane). (Alternative chromatography conditions
using EtOAc and Hexane have also been successful). Pure fractions were collected and
combined and excess eluent was removed by rotary evaporation under reduced pressure
to give the product
56 (3.9 g, 50%). LC/MS, 4.23 min (ES+)
m/
z (relative intensity) 952.36 ([
M + H]
+., 100);
1H NMR (400 MHz, CDCl
3) δ 8.62 (br s, 1H), 8.46 (s, 1H), 7.77 (br s, 1H), 7.53 (d,
J = 8.4 Hz, 2H), 7.32 (d,
J = 8.5 Hz, 2H), 6.76 (s, 1H), 6.57 (d,
J = 7.6 Hz, 1H), 6.17 (s, 1H), 6.03 - 5.83 (m, 1H), 5.26 (dd,
J = 33.8, 13.5 Hz, 3H), 5.10 (s, 2H), 4.70 - 4.60 (m, 2H), 4.58 (dd,
J = 5.7, 1.3 Hz, 2H), 4.06 - 3.99 (m, 1H), 3.92 (s, 1H), 3.82 - 3.71 (m, 1H), 3.75
(s, 3H), 2.79 - 2.64 (m, 1H), 2.54 (d,
J = 12.9 Hz, 1H), 2.16 (dq,
J = 13.5, 6.7 Hz, 1H), 1.67 (s, 3H), 1.46 (d,
J = 7.0 Hz, 3H), 1.35 - 1.24 (m, 3H), 1.12 (s, 9H), 1.10 (s, 9H), 0.97 (d,
J = 6.8 Hz, 3H), 0.94 (d,
J = 6.8 Hz, 3H), 0.87 (s, 9H), 0.07 - -0.02 (m, 6H).
(b) Allyl 3-(2-(2-(4-((((2-((S)-2-(hydroxymethyl)-4-methyl-2,3-dihydro-1H-pyrrole-1-carbonyl)-4-methoxy-5-((triisopropylsilyl)oxy)phenyl)carbamoyl)oxy)methyl)phenyl)hydrazinyl)propanamido)-4-methyl-2-oxopentanoate
(57)
[0230] The TBS ether
56 (1.32 g, 1.38 mmol) was dissolved in a 7:1:1:2 mixture of acetic acid/methanol/tetrahydrofuran/water
(14:2:2:4 mL) and allowed to stir at room temperature. After 3 hours no more starting
material was observed by LC/MS. The reaction mixture was diluted with ethyl acetate
(25 mL) and washed sequentially with water, saturated aqueous sodium bicarbonate and
brine. The organic phase was dried over magnesium sulphate filtered and excess ethyl
acetate removed by rotary evaporation under reduced pressure. The resulting residue
was subjected to flash column chromatography (silica gel, 2% methanol in dichloromethane).
Pure fractions were collected and combined and excess eluent was removed by rotary
evaporation under reduced pressure to afford the desired product
57 (920 mg, 80%). LC/MS, 3.60 min (ES+)
m/
z (relative intensity) 838.18 ([M+H]
+., 100).
1H NMR (400 MHz, CDCl
3) δ 8.55 (s, 1H), 8.35 (s, 1H), 7.68 (s, 1H), 7.52 (d,
J = 8.1 Hz, 2H), 7.31 (d,
J = 8.4 Hz, 2H), 6.77 (s, 1H), 6.71 (d,
J = 7.5 Hz, 1H), 6.13 (s, 1H), 5.97 - 5.82 (m,
J = 5.7 Hz, 1H), 5.41 - 5.15 (m, 3H), 5.10 (d,
J = 3.5 Hz, 2H), 4.76 - 4.42 (m, 5H), 4.03 (t,
J = 6.6 Hz, 1H), 3.77 (s, 5H), 2.84 (dd,
J = 16.7, 10.4 Hz, 1H), 2.26 - 2.08 (m, 2H), 1.68 (s, 3H), 1.44 (d,
J = 7.0 Hz, 3H), 1.30 (dt,
J = 14.7, 7.4 Hz, 3H), 1.12 (s, 9H), 1.10 (s, 9H), 0.96 (d,
J = 6.8 Hz, 3H), 0.93 (d,
J = 6.8 Hz, 3H).
(c) (11S,11as)-4-(2-(1-((1-(allyloxy)-4-methyl-1,2-dioxopentan-3-yl)amino)-1-oxopropan-2-yl)hydrazinyl)benzyl
11-hydroxy-7-methoxy-2-methyl-5-oxo-8-((triisopropylsilyl)oxy)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(58)
[0231] Dimethyl sulphoxide (0.2 mL, 2.75 mmol, 2.5 eq) was added dropwise to a solution
of oxalyl chloride (0.11 mL, 1.32 mmol, 1.2 eq) in dry dichloromethane (7 mL) at -78°C
(dry ice /acetone bath) under an atmosphere of argon. After 10 minutes a solution
of
57 (920 mg, 1.10 mmol) in dry dichloromethane (5 mL) was added slowly with the temperature
still at - 78°C. After 15 min triethylamine (0.77 mL, dried over 4Å molecular sieves,
5.50 mmol, 5 eq) was added dropwise and the dry ice/acetone bath was removed. The
reaction mixture was allowed to reach room temperature and was extracted with cold
hydrochloric acid (0.1 M), saturated aqueous sodium bicarbonate and brine. The organic
phase was dried over magnesium sulphate, filtered and excess dichloromethane was removed
by rotary evaporation under reduced pressure. The resulting residue was subjected
to column flash chromatography (silica gel; gradient 2% methanol to 5 % methanol in
dichloromethane). Pure fractions were collected and combined and removal of excess
eluent by rotary evaporation under reduced pressure afforded the product
58 (550 mg, 60%). LC/MS, 3.43 min (ES+)
m/
z (relative intensity) 836.01 ([M]
+., 100).
1H NMR (400 MHz, CDCl
3) δ 8.39 (s, 1H), 7.52 - 7.40 (m, 2H), 7.21 - 7.08 (m,
J = 11.5 Hz, 2H), 6.67 (s, 1H), 6.60 - 6.47 (m,
J = 7.4 Hz, 1H), 5.97 - 5.83 (m, 1H), 5.79 - 5.66 (m, 1H), 5.38 - 4.90 (m, 6H), 4.68
- 4.52 (m,
J = 18.4, 5.5 Hz, 4H), 4.04 - 3.94 (m,
J = 6.5 Hz, 1H), 3.87 - 3.76 (m, 5H), 3.00 - 2.88 (m, 1H), 2.66 - 2.49 (m, 2H), 2.21
- 2.08 (m, 2H), 1.76 (s, 3H), 1.45 (d,
J = 7.0 Hz, 3H), 1.09 - 0.98 (m,
J = 8.9 Hz, 18H), 0.96 (d,
J = 6.7 Hz, 3H), 0.93 (d,
J = 6.9 Hz, 3H).
(d) (11S,11aS)-4-(2-(1-((1-(Allyloxy)-4-methyl-1,2-dioxopentan-3-yl)amino)-1-oxopropan-2-yl)hydrazinyl)benzyl
11-((tert-butyldimethylsilyl)oxy)-7-methoxy-2-methyl-5-oxo-8-((triisopropylsilyl)oxy)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(59)
[0232] Tert-butyldimethylsilyltriflate (0.38 mL, 1.62 mmol, 3 eq) was added to a solution
of compound
58 (450 mg, 0.54 mmol) and 2,6-lutidine (0.25 mL, 2.16 mmol, 4 eq) in dry dichloromethane
(5 mL) at 0°C under argon. After 10 min, the cold bath was removed and the reaction
mixture was stirred at room temperature for 1 hour. The reaction mixture was extracted
with water, saturated aqueous sodium bicarbonate and brine. The organic phase was
dried over magnesium sulphate, filtered and excess solvent was removed by rotary evaporation
under reduced pressure. The resulting residue was subjected to column flash chromatography
(silica gel; 50/50 v/v hexane/ethyl acetate). Pure fractions were collected and combined
and excess eluent was removed by rotary evaporation under reduced pressure to give
the product
59 (334 mg, 65%). LC/MS, 4.18 min (ES+)
m/
z (relative intensity) 950.50 ([M]
+., 100).
1H NMR (400 MHz, CDCl
3) δ 8.53 (s, 1H), 8.02 (s, 1H), 7.44 (d,
J = 7.6 Hz, 2H), 7.21 (s, 1H), 7.08 (d,
J = 8.2 Hz, 2H), 6.72 - 6.61 (m,
J = 8.9 Hz, 2H), 6.16 (s, 1H), 5.97 - 5.79 (m,
J = 24.4, 7.5 Hz, 2H), 5.41 - 5.08 (m, 5H), 4.86 (d,
J = 12.5 Hz, 1H), 4.69 - 4.60 (m, 1H), 4.57 (s, 1H), 4.03 (t,
J = 6.7 Hz, 1H), 3.87 (s, 3H), 3.74 (td,
J = 9.6, 3.6 Hz, 1H), 2.43 - 2.09 (m,
J = 34.8, 19.4, 11.7 Hz, 3H), 1.76 (s, 3H), 1.43 (d,
J = 6.9 Hz, 3H), 1.30 - 1.21 (m, 3H), 0.97 (d,
J = 6.7 Hz, 3H), 0.92 (t,
J = 8.4 Hz, 3H), 0.84 (s, 9H), 0.23 (s, 3H), 0.12 (s, 3H).
(e) (11S,11aS)-4-(2-(1-((1-(Allyloxy)-4-methyl-1,2-dioxopentan-3-yl)amino)-1-oxopropan-2-yl)hydrazinyl)benzyl
11-((tert-butyldimethylsilyl)oxy)-8-hydroxy-7-methoxy-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(60)
[0233] Lithium acetate (50 mg, 0.49 mmol) was added to a solution of compound
59 (470 mg, 0.49 mmol) in wet dimethylformamide (4 mL, 50:1 DMF/water). After 4 hours,
the reaction was complete and the reaction mixture was diluted with ethyl acetate
and washed with citric acid (pH ∼ 3), water and brine. The organic layer was dried
over magnesium sulphate filtered and excess ethyl acetate was removed by rotary evaporation
under reduced pressure. The resulting residue was subjected to column flash chromatography
(silica gel; gradient, 50/50 to 25/75 v/v hexane/ethyl acetate). Pure fractions were
collected and combined and excess eluent was removed by rotary evaporation under reduced
pressure to give the product
60 (400 mg, quantitative). LC/MS, 3.32 min (ES+)
m/
z (relative intensity) 794.18 ([M+H]
+., 100).
1H NMR (400 MHz, CDCl
3) δ 8.53 (s, 1H), 8.02 (s, 1H), 7.44 (d,
J = 7.6 Hz, 2H), 7.21 (s, 1H), 7.08 (d,
J = 8.2 Hz, 2H), 6.72 - 6.61 (m,
J = 8.9 Hz, 2H), 6.16 (s, 1H), 5.97 - 5.79 (m,
J = 24.4, 7.5 Hz, 2H), 5.41 - 5.08 (m, 5H), 4.86 (d,
J = 12.5 Hz, 1H), 4.69 - 4.60 (m, 1H), 4.57 (s, 1H), 4.03 (t,
J = 6.7 Hz, 1H), 3.87 (s, 3H), 3.74 (td,
J = 9.6, 3.6 Hz, 1H), 2.43 - 2.09 (m,
J = 34.8, 19.4, 11.7 Hz, 3H), 1.76 (s, 3H), 1.43 (d,
J = 6.9 Hz, 3H), 1.30 - 1.21 (m, 3H), 0.97 (d,
J = 6.7 Hz, 3H), 0.92 (t,
J = 8.4 Hz, 3H), 0.84 (s, 9H), 0.23 (s, 3H), 0.12 (s, 3H).
(iv) (11S,11aS)-4-((2S,5S)-37-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-5-isopropyl-2-methyl-4,7,35-trioxo-10,13,16,19,22,25,28,31-octaoxa-3,6,34-triazaheptatriacontanamido)benzyl
11-hydroxy-7-methoxy-8-((5-(((S)-7-methoxy-2-methyl-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)pentyl)oxy)-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(64)
[0234]

(a) (11S)-allyl 8-((5-(((11S)-10-(((4-(2-(1-((1-(allyloxy)-4-methyl-1,2-dioxopentan-3-yl)amino)-1-oxopropan-2-yl)hydrazinyl)benzyl)oxy)carbonyl)-11-((tert-butyldimethylsilyl)oxy)-7-methoxy-2-methyl-5-oxo-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)pentyl)oxy)-11-((tert-butyldimethylsilyl)oxy)-7-methoxy-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(61)
[0235] Potassium carbonate (70 mg, 0.504 mmol, 1 eq) was added to a solution of
55 (370 mg, 0.552 mmol, 1.2 eq) and phenol
60 (400 mg, 0.504 mmol) in dry acetone (25 mL). The reaction was stirred 8 hours at
70°C. The LC/MS showed that all the starting material was not consumed, so the reaction
was allowed to stir overnight at room temperature and stirred for an additional 2
hours the next day. Acetone was removed by rotary evaporation under reduced pressure.
The resulting residue was subjected to flash column chromatography (silica gel; 80%
ethyl acetate in hexane to 100% ethyl acetate). Pure fractions were collected and
combined and excess eluent was removed by rotary evaporation under reduced pressure
to give the product
61 (385 mg, 57%). LC/MS, 4.07 min (ES+)
m/
z (relative intensity) 1336.55 ([M+H]
+., 50).
(b) (11S)-allyl 8-((5-(((11S)-10-(((4-(2-(1-((1-(allyloxy)-4-methyl-1,2-dioxopentan-3-yl)amino)-1-oxopropan-2-yl)hydrazinyl)benzyl)oxy)carbonyl)-11-hydroxy-7-methoxy-2-methyl-5-oxo-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)pentyl)oxy)-11-hydroxy-7-methoxy-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(62)
[0236] Tetra-
n-butylammonium fluoride (1M, 0.34 mL, 0.34 mmol, 2 eq) was added to a solution of
61 (230 mg, 0.172 mmol) in dry tetrahydrofuran (3 mL). The starting material was totally
consumed after 10 minutes. The reaction mixture was diluted with ethyl acetate (30
mL) and washed sequentially with water and brine. The organic phase was dried over
magnesium sulphate filtered and excess ethyl acetate removed by rotary evaporation
under reduced pressure. The resulting residue
62 was used as a crude mixture for the next reaction. LC/MS, 2.87 min (ES+)
m/
z (relative intensity) 1108.11 ([M+H]
+., 100).
(c) (11S)-4-(2-(1-((1-amino-3-methyl-1-oxobutan-2-yl)amino)-1-oxopropan-2-yl)hydrazinyl)benzyl
11-hydroxy-7-methoxy-8-((5-((7-methoxy-2-methyl-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)pentyl)oxy)-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(63)
[0237] Tetrakis(triphenylphosphine)palladium(0) (12 mg, 0.01 mmol, 0.06 eq) was added to a solution
of crude
62 (0.172 mmol) and pyrrolidine (36 µL, 0.43 mmol, 2.5 eq) in dry dichloromethane (10
mL). The reaction mixture was stirred 20 minutes and diluted with dichloromethane
and washed sequentially with saturated aqueous ammonium chloride and brine. The organic
phase was dried over magnesium sulphate filtered and excess dichloromethane removed
by rotary evaporation under reduced pressure. The resulting residue
63 was used as a crude mixture for the next reaction. LC/MS, 2.38 min (ES+)
m/
z (relative intensity) 922.16 ([M+H]
+., 40).
(d) (11S,11aS)-4-((2S,5S)-37-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-5-isopropyl-2-methyl-4,7,35-trioxo-10,13,16,19,22,25,28,31-octaoxa-3,6,34-triazaheptatriacontanamido)benzyl
11-hydroxy-7-methoxy-8-((5-(((S)-7-methoxy-2-methyl-5-oxo-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)pentyl)oxy)-2-methyl-5-oxo-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(64)
[0238] 1-ethyl-3-(3'-dimethylaminopropyl)carbodiimide (EDCI, 33 mg, 0.172 mmol) was added
to a solution of crude
63 (0.172 mmol) and Mal-(PEG)
8-acid (100 mg, 0.172 mmol) in dry dichloromethane (10 mL). The reaction was stirred
for 2 hours and the presence ofstarting material was no longer observed by LC/MS.
The reaction was diluted with dichloromethane and washed sequentially with water and
brine. The organic phase was dried over magnesium sulphate filtered and excess dichloromethane
removed by rotary evaporation under reduced pressure. The resulting residue was subjected
to flash column chromatography (silica gel; 100% chloroform to 10% methanol in chloroform).
Pure fractions were collected and combined and excess eluent was removed by rotary
evaporation under reduced pressure to give
64 (E) (60 mg, 25% over 3 steps).
Example 8
[0239]

(11S)-4-(1-iodo-20-isopropyl-23-methyl-2,18,21-trioxo-6,9,12,15-tetraoxa-3,19,22-triazatetracosanamido)benzyl
11-hydroxy-7-methoxy-8-(3-((7-methoxy-5-oxo-2-((E)-prop-1-en-1-yl)-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yl)oxy)propoxy)-5-oxo-2-((E)-prop-1-en-1-yl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(66)
[0241] N,N'-diisopropylcarbodiimide (DIC, 4.71 µL, 0.0304 mmol) was added to a solution of amine
65 (0.0276 mmol) and Iodo-(PEG)
4-acid (13.1 mg, 0.0304 mmol) in dry dichloromethane (0.8 mL). The reaction was stirred
for 3 hours and the presence of starting material was no longer observed by LC/MS.
The reaction mixture was directly loaded onto a thin-layer chromatography (TLC) plate
and purified by prep-TLC (10% methanol in chloroform). Pure bands were scraped off
the TLC plate, taken up in 10% methanol in chloroform, filtered and excess eluent
removed by rotary evaporation under reduced pressure to give
66 (D) (20.9 mg, 56%). LC/MS, method 2, 3.08 min (ES+)
m/
z (relative intensity) 1361.16 ([M+H]
+, 100).
General Experimental Methods for Example 9
[0242] LCMS data were obtained using an Agilent 1200 series LC/MS with an Agilent 6110 quadrupole
MS, with Electrospray ionisation. Mobile phase A - 0.1% Acetic acid in water. Mobile
Phase B - 0.1% in acetonitrile. Flow rate of 1.00ml/min. Gradient from 5% B rising
up to 95% B over 3 minutes, remaining at 95% B for 1 minute and then back down to
5% B over 6 seconds. The total run time is 5 minutes. Column: Phenomenex Gemini-NX
3µm C18, 30 x 2.00mm. Chromatograms based on UV detection at 254nm. Mass Spectra were
achieved using the MS in positive mode. Proton NMR chemical shift values were measured
on the delta scale at 400 MHz using a Bruker AV400. The following abbreviations have
been used: s, singlet; d, doublet; t, triplet; q, quartet; m, multiplet; br, broad.
Coupling constants are reported in Hz. Unless otherwise stated, column chromatography
(by the flash procedure) were performed on Merck Kieselgel silica (Art. 9385). Mass
spectroscopy (MS) data were collected using a Waters Micromass LCT instrument coupled
to a Waters 2795 HPLC separations module. Thin Layer Chromatography (TLC) was performed
on silica gel aluminium plates (Merck 60, F
254). All other chemicals and solvents were purchased from Sigma-Aldrich or Fisher Scientific
and were used as supplied without further purification.
[0243] Optical rotations were measured on an ADP 220 polarimeter (Bellingham Stanley Ltd.)
and concentrations (
c) are given in g/100mL. Melting points were measured using a digital melting point
apparatus (Electrothermal). IR spectra were recorded on a Perkin-Elmer Spectrum 1000
FT IR Spectrometer.
1H and
13C NMR spectra were acquired at 300 K using a Bruker Avance NMR spectrometer at 400
and 100 MHz, respectively. Chemical shifts are reported relative to TMS (δ = 0.0 ppm),
and signals are designated as s (singlet), d (doublet), t (triplet), dt (double triplet),
dd (doublet of doublets), ddd (double doublet of doublets) or m (multiplet), with
coupling constants given in Hertz (Hz). Mass spectroscopy (MS) data were collected
using a Waters Micromass ZQ instrument coupled to a Waters 2695 HPLC with a Waters
2996 PDA. Waters Micromass ZQ parameters used were: Capillary (kV), 3.38; Cone (V),
35; Extractor (V), 3.0; Source temperature (°C), 100; Desolvation Temperature (°C),
200; Cone flow rate (L/h), 50; De-solvation flow rate (L/h), 250. High-resolution
mass spectroscopy (HRMS) data were recorded on a Waters Micromass QTOF Global in positive
W-mode using metal-coated borosilicate glass tips to introduce the samples into the
instrument. Thin Layer Chromatography (TLC) was performed on silica gel aluminium
plates (Merck 60, F
254), and flash chromatography utilised silica gel (Merck 60, 230-400 mesh ASTM). Except
for the HOBt (NovaBiochem) and solid-supported reagents (Argonaut), all other chemicals
and solvents were purchased from Sigma-Aldrich and were used as supplied without further
purification. Anhydrous solvents were prepared by distillation under a dry nitrogen
atmosphere in the presence of an appropriate drying agent, and were stored over 4Å
molecular sieves or sodium wire. Petroleum ether refers to the fraction boiling at
40-60°C.
[0244] General LC/MS conditions: The HPLC (Waters Alliance 2695) was run using a mobile
phase of water (A) (formic acid 0.1%) and acetonitrile (B) (formic acid 0.1%). Gradient:
initial composition 5% B over 1.0 min then 5% B to 95% B within 3 min. The composition
was held for 0.5 min at 95% B, and then returned to 5% B in 0.3 minutes. Total gradient
run time equals 5 min. Flow rate 3.0 mL/min, 400µL was split
via a zero dead volume tee piece which passes into the mass spectrometer. Wavelength
detection range: 220 to 400 nm. Function type: diode array (535 scans). Column: Phenomenex®
Onyx Monolithic C18 50 x 4.60 mm
Example 9
(i) Key Intermediates
(a)
[0245]

(a-i) (S)-2-(allyloxycarbonylamino)-3-methylbutanoic acid (I2)
[0246] Allyl chloroformate (36.2 ml, 340.59 mmol, 1.2 eq) was added dropwise to a stirred
solution of L-valine (
I1)(33.25 g, 283.82 mmol, 1.0 eq) and potassium carbonate (59.27 g, 425.74 mmol, 1.5
eq) in water (650 mL) and THF (650 mL). The reaction mixture was stirred at room temperature
for 18 hours, then the solvent was concentrated under reduced pressure and the remaining
solution extracted with diethyl ether (3 x 100 mL). The aqueous portion was acidified
to pH 2 with conc. HCI and extracted with DCM (3 x 100 mL). The combined organics
were washed with brine, dried over MgSO
4, filtered and concentrated under reduced pressure to afford the product as a colourless
oil (57.1 g, assumed 100% yield). LC/MS (1.966 min (ES
+)),
m/
z: 202.1 [M+H]
+.
1H NMR (400 MHz, DMSO-d
6) δ 12.57 (br s, 1H), 7.43 (d, 1H,
J = 8.6 Hz), 5.96 - 5.86 (m, 1H), 5.30 (ddd, 1H,
J = 17.2, 3.4, 1.7 Hz), 5.18 (ddd, 1H,
J = 10.4, 2.9, 1.6 Hz), 4.48 (dt, 2H,
J = 5.3, 1.5 Hz), 3.85 (dd, 1H,
J = 8.6, 6.0 Hz), 2.03 (oct, 1H,
J = 6.6 Hz), 0.89 (d, 3H,
J = 6.4 Hz), 0.87 (d, 3H,
J = 6.5 Hz).
(a-ii) (S)-2,5-dioxopyrrolidin-1-yl 2-(allyloxycarbonylamino)-3-methylbutanoate (I3)
[0247] To a stirred solution of the protected acid
I2 (60.6 g, 301.16 mmol, 1.0 eq) and N-hydroxysuccinimide (34.66 g, 301.16 mmol, 1.0
eq) in dry THF (800 mL) was added dicyclohexylcarbodiimide (62.14 g, 301.16 mmol,
1 eq). The reaction was stirred for 18 hours at room temperature. The reaction mixture
was then filtered, the solid washed with THF and the combined filtrate was concentrated
under reduced pressure. The residue was redissolved in DCM and left to stand at 0°C
for 30 minutes. The suspension was filtered and washed with cold DCM. Concentration
of the filtrate under reduced pressure afforded the product as a viscous colourless
oil (84.7 g, assumed 100% yield) which was used in the next step without further purification.
LC/MS (2.194 min (ES
+)),
m/
z: 321.0 [M+Na]
+.
1H NMR (400 MHz, DMSO-d
6) δ 8.0 (d, 1H,
J = 8.3 Hz), 5.97 - 5.87 (m, 1H), 5.30 (ddd, 1H,
J = 17.2, 3.0, 1.7 Hz), 5.19 (ddd, 1H,
J = 10.4, 2.7, 1.4 Hz), 4.52 (dt, 2H,
J = 5.3, 1.4 Hz), 4.32 (dd, 1H,
J = 8.3, 6.6 Hz), 2.81 (m, 4H), 2.18 (oct, 1H,
J = 6.7 Hz), 1.00 (d, 6H,
J = 6.8 Hz),
(a-iii) (S)-2-((S)-2-(allyloxycarbonylamino)-3-methylbutanamido)propanoic acid (I4)
[0248] A solution of succinimide ester
I3(12.99 g, 43.55 mmol, 1.0 eq) in THF (50 mL) was added to a solution of L-alanine
(4.07 g, 45.73 mmol, 1.05 eq) and NaHCO
3 (4.02 g, 47.90 mmol, 1.1 eq) in THF (100 mL) and H
2O (100 mL). The mixture was stirred at room temperature for 72 hours when the THF
was removed under reduced pressure. The pH was adjusted to 3-4 with citric acid to
precipitate a white gum. After extraction with ethyl acetate (6 x 150 mL), the combined
organics were washed with H
2O (200 mL), dried over MgSO
4, filtered and concentrated under reduced pressure. Trituration with diethyl ether
afforded the product as a white powder which was collected by filtration and washed
with diethyl ether (5.78 g, 49%). LC/MS (1.925 min (ES
+)),
m/
z: 273.1 [M+H]
+.
1H NMR (400 MHz, DMSO-d
6) δ 12.47 (br s, 1H), 8.17 (d, 1H,
J = 6.8 Hz), 7.16 (d, 1H,
J = 9.0 Hz), 5.95 - 5.85 (m, 1H), 5.29 (dd, 1H,
J = 17.2, 1.7 Hz), 5.17 (dd, 1H,
J = 10.4, 1.5 Hz), 4.46 (m, 2H), 4.18 (quin, 1H,
J = 7.2 Hz), 3.87 (dd, 1H,
J = 9.0, 7.1 Hz), 1.95 (oct, 1H,
J = 6.8 Hz), 1.26 (d, 3H,
J = 7.3 Hz), 0.88 (d, 3H,
J = 6.8 Hz), 0.83 (d, 3H,
J = 6.8 Hz).
(a-iv) Allyl (S)-1-((S)-1-(4-(hydroxymethyl)phenylamino)-1-oxopropan-2-ylamino)-3-methyl-1-oxobutan-2-ylcarbamate
(I5)
[0249] EEDQ (5.51 g, 22.29 mmol, 1.05 eq) was added to a solution of p-aminobenzyl alcohol
(2.74 g, 22.29 mmol, 1.05 eq) and acid
I4 (5.78 g, 21.23 mmol, 1 eq) in dry THF (100 mL). and stirred at room temperature for
72 hours. The reaction mixture was then concentrated under reduced pressure and the
resulting brown solid was triturated with diethyl ether and filtered with subsequent
washing with an excess of diethyl ether to afford the product as an off-white solid
(7.1 g, 88 %). LC/MS (1.980 min (ES
+)),
m/
z: 378.0 [M+H]
+.
1H NMR (400 MHz, DMSO-d
6) δ 9.89 (br s, 1H), 8.13 (d, 1H,
J = 7.0 Hz), 7.52 (d, 2H,
J = 8.5 Hz), 7.26 (m, 1H), 7.23 (d, 2H,
J = 8.5 Hz), 5.91 (m, 1H), 5.30 (m, 1H), 5.17 (m, 1H), 4.46 (m, 2H), 5.09 (t, 1H,
J = 5.6 Hz), 4.48 (m, 2H), 4.42 (m, 3H), 3.89 (dd, 1H,
J = 8.6, 6.8 Hz), 1.97 (m, 1H), 1.30 (d, 3H,
J = 7.1 Hz), 0.88 (d, 3H,
J = 6.8 Hz), 0.83 (d, 3H,
J = 6.7 Hz).
(b)
[0250]

1-iodo-2-oxo-6,9,12,15-tetraoxa-3-azaoctadecan-18-oic acid (I7)
[0251] A solution of iodoacetic anhydride (0.250 g, 0.706 mmol, 1.1 eq) in dry DCM (1 mL)
was added to amino-PEG(
4)-acid
I6 (0.170 g, 0.642 mmol, 1.0 eq) in DCM (1 mL). The mixture was stirred in the dark
at room temperature overnight. The reaction mixture was washed with 0.1 M HCl, water,
dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 3% MeOH and 0.1% formic acid in chloroform to 10% MeOH
and 0.1% formic acid in chloroform) to afford the product as an orange oil (0.118
g, 42%). LC/MS (1.623 min (ES
+)),
m/
z: 433..98 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 8.069 (s, 1H), 7.22 (br s, 1H), 3.79 (t, 2H,
J = 5.8 Hz), 3.74 (s, 2H), 3.72 - 3.58 (m, 14H), 3.50 - 3.46 (m, 2H), 2.62 (t, 2H,
J = 5.8 Hz).
(ii) (11S,11aS)-allyl 11-(tert-butyldimethylsilyloxy)-8-(3-iodopropoxy)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(74)
[0252]

(a) (S)-5-((tert-butyldimethylsilyloxy)methyl)-1-(5-methoxy-2-nitro-4-(triisopropylsilyloxy)benzoyl)-4,5-dihydro-1H-pyrrol-3-yl
trifluoromethanesulfonate (47)
[0253] Triflic anhydride (28.4 g, 100.0 mmol, 3.0 eq) was added dropwise, over 25 mins,
to a vigorously stirred solution of the ketone
46 (19.5 g, 30.0 mmol, 1.0 eq) in DCM (550 mL) containing 2,6-lutidine (14.4 g, 130.0
mmol, 4.0 eq) at -50°C. The reaction mixture was stirred for 1.5 hours when LC/MS
indicated complete reaction. The organic phase was washed successively with water
(100 mL), saturated sodium bicarbonate (150 mL), brine (50 mL), and the organic phase
was dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 90/10 v/v
n-hexane/EtOAc) to afford the product as a pale yellow oil (19.5 g, 82 %). LC/MS (4.391
min (ES
+)),
m/
z: 713.25 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 7.68 (s, 1H), 6.72 (s, 1H), 6.02 (t, 1H,
J = 1.9 Hz), 4.75 (m, 1H), 4.05 (m, 2H), 3.87 (s, 3H), 3.15 (ddd, 1H,
J = 16.2, 10.3, 2.3 Hz), 2.96 (ddd, 1H,
J = 16.2, 4.0, 1.6 Hz), 1.28 - 1.21 (m, 3H), 1.07 (d, 18H,
J = 7.2 Hz), 0.88 (s, 9H), 0.09 (s, 3H), 0.08 (s, 3H).
(b) (S,E)-(2-((tert-butyldimethylsilyloxy)methyl)-4-(prop-1-enyl)-2,3-dihydro-1H-pyrrol-1-yl)(5-methoxy-2-nitro-4-(triisopropylsilyloxy)phenyl)methanone
(67)
[0254] Tetrakis(triphenylphosphine)palladium(0) (0.41 g, 0.35 mmol, 0.03 eq) was added to
a mixture of the triflate
47 (8.4 g, 11.8 mmol, 1.0 eq),
E-1-propene-1-ylboronic acid (1.42 g, 16.5 mmol, 1.4 eq) and potassium phosphate (5.0
g, 23.6 mmol, 2.0 eq) in dry dioxane (60 mL) under a nitrogen atmosphere. The mixture
was stirred at 25°C for 120 mins when LC/MS indicated complete reaction. Ethyl acetate
(120 mL) and water (120 mL) were added, the organic phase was removed, washed with
brine (20 mL), dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 95/5 v/v
n-hexane/EtOAc to 90/10 v/v
n-hexane/EtOAc) to afford the product as a yellow foam (4.96 g, 70 %). LC/MS (4.477
min (ES
+)),
m/
z: 605.0 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 7.67 (s, 1H), 6.74 (s, 1H), 5.93 (d, 1H,
J = 15.4 Hz), 5.67 (s, 1H), 4.65 (m, 1H), 4.04 (m, 2H), 3.86 (s, 3H), 2.85 (m, 1H),
2.71 (m, 1H), 1.72 (dd, 3H,
J = 6.8, 1.0 Hz), 1.30 - 1.22 (m, 3H), 1.07 (d, 18H,
J = 7.2 Hz), 0.87 (s, 9H), 0.08 (s, 3H), 0.07 (s, 3H).
(c) (S,E)-(2-amino-5-methoxy-4-(triisopropylsilyloxy)phenyl)(2-((tert-butyldimethylsilyloxy)methyl)-4-(prop-1-enyl)-2,3-dihydro-1H-pyrrol-1-yl)methanone
(68)
[0255] Zinc dust (22.0 g, 0.33 mol, 37 eq) was added, in portions over 20 mins, to a solution
of the propenyl intermediate
67 (5.5 g, 9.1 mmol, 1.0 eq) in 5% v/v formic acid / ethanol (55 mL), using an ice bath
to maintain the temperature between 25-30°C. After 30 mins, the reaction mixture was
filtered through a short bed of celite®. The celite® was washed with ethyl acetate
(65 mL) and the combined organics were washed successively with water (35 mL), saturated
sodium bicarbonate (35 mL) and brine (10 mL). The organic phase was dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 90/10 v/v
n-hexane/EtOAc) to afford the product as a pale yellow oil (3.6 g, 69.0 %). LC/MS (4.439
min (ES
+)),
m/
z: 575.2 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 6.75 (m, 1H), 6.40 (br s, 1H), 6.28 (m, 1H), 6.11 (d, 1H,
J = 15.4 Hz), 5.53 (m, 1H), 4.67 (m, 1H), 4.36 (m, 2H), 3.93 (br s, 1H), 3.84 (br s,
1H), 3.73 (s, 3H), 2.86 (dd, 1H,
J = 15.7, 10.4 Hz), 2.73 (dd, 1H,
J = 15.9, 4.5 Hz), 1.80 (dd, 3H,
J = 6.8, 1.3 Hz), 1.35- 1.23 (m, 3H), 1.12 (d, 18H,
J = 7.3 Hz), 0.89 (s, 9H), 0.08 (s, 3H), 0.07 (s, 3H).
(d) (S,E)-allyl 2-(2-((tert-butyldimethylsilyloxy)methyl)-4-(prop-1-enyl)-2,3-dihydro-1H-pyrrole-1-carbonyl)-4-methoxy-5-(triisopropylsilyloxy)phenylcarbamate
(69)
[0256] Allyl chloroformate (0.83 g, 6.88 mmol, 1.1 eq) was added to a solution of the amine
68 (3.6 g, 6.26 mmol, 1.0 eq) in dry DCM (80 mL) containing dry pyridine (1.09 g, 13.77
mmol, 2.2 eq) at -78°C. The dry ice was removed and the reaction mixture allowed to
warm to room temperature. After stirring for a further 15 minutes, LC/MS indicated
complete reaction. The organic phase was washed successively with 0.01N HCI (50 mL),
saturated sodium bicarbonate (50 mL), brine (10 mL), dried over MgSO
4, filtered and concentrated under reduced pressure to leave a pale yellow oil which
was used in the next step without further purification (4.12g, assumed 100% yield).
LC/MS (4.862 min (ES
+)),
m/
z: 659.2 [M+H]
+.
(e)(S,E)-allyl 2-(2-(hydroxymethyl)-4-(prop-1-enyl)-2,3-dihydro-1H-pyrrole-1-carbonyl)-4-methoxy-5-(triisopropylsilyloxy)phenylcarbamate
(70)
[0257] The crude intermediate
69 (assumed 100% yield, 4.12 g, 6.25 mmol, 1.0 eq) was dissolved in a mixture of acetic
acid (70 mL), methanol (10 mL), THF (10 mL) and water (20 mL) and allowed to stir
at room temperature. After 6 hours the reaction mixture was diluted with ethyl acetate
(500 mL) and washed successively with water (2 x 500 mL), saturated sodium bicarbonate
(300 mL) and brine (50 mL). The organic phase was dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 1/99 v/v methanol/DCM to 5/95 v/v methanol/DCM) to afford
the product as a yellow oil and a further 1 g of unreacted starting material was recovered.
This material was subjected to the same reaction conditions as above, but was left
stirring for 16 h. After work up and purification, additional product was isolated
(2.7 g, 79%, 2 steps) LC/MS (3.742 min (ES
+)),
m/
z: 545.2 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 8.38 (m, 1H), 7.72 (m, 1H), 6.81 (s, 1H), 6.37 (m, 1H), 6.10 (d, 1H,
J = 15.8 Hz), 5.97 (m, 1H), 5.53 (m, 1H), 5.36 (ddd, 1H,
J = 17.2, 3.1, 1.5 Hz), 5.25 (ddd, 1H,
J = 10.4, 2.5, 1.3 Hz), 4.78 (m, 1H), 4.65 (dt, 2H,
J = 5.7, 1.3 Hz), 3.84 (m, 3H), 3.79 (s, 3H), 3.04 (dd, 1H,
J = 16.7, 10.5 Hz), 2.40 (dd, 1H,
J = 16.0, 4.5 Hz), 1.82 (dd, 3H,
J = 6.8, 1.0 Hz), 1.36 - 1.26 (m, 3H), 1.14 (d, 18H,
J = 7.3 Hz).
(f) (11S,11aS)-allyl 11-hydroxy-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-8-(triisopropylsilyloxy)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(71)
[0258] Dry dimethyl sulfoxide (1.16 g, 14.87 mmol, 3.0 eq) was added dropwise to a solution
of oxalyl chloride (0.94 g, 7.43 mmol, 1.5 eq) in DCM (25 mL) at -78°C under an atmosphere
of nitrogen. Maintaining the temperature at -78°C, after 10 mins a solution of the
primary alcohol
70 (2.7 g, 4.96 mmol, 1.0 eq) in DCM (20 mL) was added dropwise. After a further 15
mins, dry triethylamine (2.5g, 24.78 mmol, 5.0 eq) was added, and the reaction mixture
allowed to warm to room temperature. The reaction mixture was washed successively
with cold 0.1N HCI (50 mL), saturated sodium hydrogen carbonate (50 mL) and brine
(10 mL) and the organic layer was dried over MgSO
4, filtered and concentrated under reduced pressure to afford the product as a yellow
oil which was used in the next step without further purification (2.68g, assumed 100%
yield). LC/MS (3.548 min (ES
+)),
m/
z: 543.2 [M+H]
+.
(g) (11S,11aS)-allyl 11-(tert-butyldimethylsilyloxy)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-8-(triisopropylsilyloxy)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(72)
[0259] Tert-butyldimethylsilyltrifluoromethane sulfonate (3.93 g, 14.87 mmol, 3.0 eq) was
added to a solution of the carbinolamine
71 (assumed 100% yield, 2.68 g, 4.96 mmol, 1.0 eq) and 2,6-lutidine (2.12 g, 19.83 mmol,
4.0 eq) in dry DCM (40 mL) at 0°C under an atmosphere of nitrogen. After 10 minutes,
the reaction mixture was allowed to warm to room temperature and stirred for a further
60 minutes. The organic phase was washed successively with water (10 mL), saturated
sodium bicarbonate (10 mL) and brine (5 mL), dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, chloroform to 2/98 v/v Methanol/chloroform) to afford
the product as a yellow oil (2.0g, 63%, 2 steps). LC/MS (4.748 min (ES
+)),
m/
z: 657.2 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 7.19 (s, 1H), 6.86 (m, 1H), 6.66 (s, 1H), 6.22 (d, 1H,
J = 15.4 Hz), 5.81 (d, 1H,
J = 8.8 Hz), 5.78 (m, 1H), 5.48 (m, 1H), 5.11 (d, 1H,
J = 5.0 Hz), 5.08 (m, 1H), 4.58 (dd, 1H,
J = 13.4, 5.4 Hz), 4.35 (dd, 1H,
J = 13.2, 5.7 Hz), 3.83 (s, 3H), 3.76 (s, 1H), 3.00 (dd, 1H,
J = 15.6, 11.0 Hz), 2.53 (m, 1H), 1.81 (dd, 3H,
J = 6.8, 0.9 Hz), 1.30 - 1.18 (m, 3H), 1.08 (d, 9H,
J = 2.3 Hz), 1.06 (d, 9H,
J = 2.3 Hz), 0.86 (s, 9H), 0.25 (s, 3H), 0.18 (s, 3H).
(h) (11S,11aS)-allyl 11-(tert-butyldimethylsilyloxy)-8-hydroxy-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(73)
[0260] Lithium acetate dihydrate (0.31 g, 3.04 mmol, 1.0 eq) was added to a solution of
the diazepine
72 (2.0 g, 3.04 mmol, 1.0 eq) in wet DMF (20 mL) at 25°C and stirred for 4 hours. The
reaction mixture was diluted with ethyl acetate (200 mL) and washed successively with
0.1M citric acid (50 mL, pH 3), water (50 mL) and brine (10 mL), dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 50/50 v/v
n-hexane/EtOAc to 25/75 v/v
n-hexane/EtOAc) to afford the product as a pale yellow solid (0.68g, 45 %). LC/MS (3.352
min (ES
+)),
m/
z: 501.1 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 7.02 (s, 1H), 6.66 (m, 1H), 6.53 (s, 1H), 6.03 (d, 1H,
J = 15.5 Hz), 5.80 (s, 1H), 5.63 (d, 1H,
J = 8.9 Hz), 5.55 (m, 1H), 5.29 (m, 1H), 4.87 (m, 2H), 4.39 (dd, 1H,
J = 13.5, 4.2 Hz), 4.20 (dd, 1H,
J = 13.2, 5.7 Hz), 3.73 (s, 3H), 3.59 (m, 1H), 2.81 (dd, 1H,
J = 16.1, 10.5 Hz), 2.35 (d, 1H,
J = 15.7 Hz), 1.61 (d, 3H,
J = 6.4 Hz), 0.67 (s, 9H), 0.05 (s, 3H), 0.00 (s, 3H).
(i) (11S,11aS)-allyl 11-(tert-butyldimethylsilyloxy)-8-(3-iodopropoxy)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(74)
[0261] Diiodopropane (0.295 g, 1.00 mmol, 5.0 eq) and potassium carbonate (0.028 g, 0.20
mmol, 1.0 eq) were added to a solution of the phenol
33 (0.100 g, 0.020 mmol, 1.0 eq) in dry acetone (5 mL). The reaction mixture was heated
at 60°C for 6 hours when LC/MS showed complete reaction. The reaction mixture was
concentrated to dryness under reduced pressure and the residue was purified by flash
chromatography (silica gel, 75/25 v/v
n-hexane/EtOAc to 50/50 v/v
n-hexane/EtOAc) to afford the product as a colourless oil (0.074 g, 56%). LC/MS (3.853
min (ES
+)),
m/
z: 669.0 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 7.26 (s, 1H), 6.90 (s, 1H), 6.68 (s, 1H), 6.24 (d, 1H,
J = 15.3 Hz), 5.87 (d, 1H,
J = 8.9 Hz), 5.78 (m, 1H), 5.53 (m, 1H), 5.12 (m, 2H), 4.65 (m, 2H), 4.41 (m, 1H),
4.11 (m, 1H), 3.93 (s, 3H), 3.81 (m, 1H), 3.40 (t, 2H,
J = 6.7 Hz), 3.05 (dd, 1H,
J = 16.3, 10.1 Hz), 2.57 (m, 1H), 2.34 (m, 2H), 1.84 (d, 3H,
J = 6.6 Hz), 0.92 (s, 9H), 0.28 (s, 3H), 0.26 (s, 3H).
(iii) (11S,11aS)-4-((S)-2-((S)-2-(allyloxycarbonylamino)-3-methylbutanamido)propanamido)benzyl
11-(tert-butyldimethylsilyloxy)-8-hydroxy-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
79)
[0262]

(a) Allyl ((S)-1-(((S)-1-((4-((((2-((S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-4-((E)-prop-1-en-1-yl)-2,3-dihydro-1H-pyrrole-1-carbonyl)-4-methoxy-5-((triisopropylsilyl)oxy)phenyl)carbamoyl)oxy)methyl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(75)
[0263] Triethylamine (0.256 mL, 1.84 mmol, 2.2 eq) was added to a stirred solution of the
amine
68 (0.480 g, 0.835 mmol, 1.0 eq) and triphosgene (0.089 g, 0.301 mmol, 0.36 eq) in dry
THF (15 mL) at 5°C (ice bath). The progress of the isocyanate reaction was monitored
by periodically removing aliquots from the reaction mixture and quenching with methanol
and performing LCMS analysis. Once the isocyanate reaction was complete a solution
of Alloc-Val-Ala-PABOH
I5 (0.473 g, 1.25 mmol, 1.5 eq) and triethylamine (0.174 mL, 1.25 mmol, 1.5 eq) in dry
THF (10 mL) was rapidly added by injection to the freshly prepared isocyanate. The
reaction was allowed to stir at 40°C for 4 hours followed by stirring at room temperature
overnight. The mixture was concentrated under reduced pressure, and purified by flash
chromatography (silica gel, 20/80 v/v
n-hexane/EtOAc to 50/50 v/v
n-hexane/EtOAc, then 1/99 v/v DCM/MeOH to 5/95 v/v DCM/MeOH) to afford the product
as a yellow solid (0.579 g, 71%). LC/MS (4.468 min (ES
+)),
m/
z: 978.55 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 8.63 (br s, 1H), 8.42 (s, 1H), 7.78 (br s, 1H), 7.53 (d, 2H,
J = 8.1 Hz), 7.31 (d, 2H,
J = 8.6 Hz), 6.76 (s, 1H), 6.59 (d, 1H,
J = 7.6 Hz), 6.36 (br s, 1H), 6.04 (d, 1H,
J = 15.9 Hz), 5.90 (m, 1H), 5.55 (m, 1H), 5.33 - 5.21 (m, 3H), 5.10 (s, 2H), 4.66 (m,
2H), 4.57 (dd, 2H,
J = 5.6, 1.0 Hz), 3.98 (dd, 1H,
J = 7.3, 6.8 Hz), 3.90 (m, 1H), 3.81 (m, 1H), 3.78 (s, 3H), 2.82 (dd, 1H,
J = 15.4, 9.6 Hz), 2.72 (dd, 1H,
J = 15.9, 3.5 Hz), 2.17 (m, 1H), 1.78 (dd, 3H,
J = 6.5, 0.8 Hz), 1.46 (d, 3H,
J = 7.1 Hz), 1.29 (m, 3H), 1.11 (d, 18H,
J = 7.1 Hz), 0.97 (d, 3H,
J = 6.8 Hz), 0.92 (d, 3H,
J = 6.8 Hz), 0.83 (s, 9H), 0.04 (s, 3H), 0.01 (s, 3H).
(b) Allyl ((S)-1-(((S)-1-((4-((((2-((S)-2-(hydroxymethyl)-4-((E)-prop-1-en-1-yl)-2,3-dihydro-1H-pyrrole-1-carbonyl)-4-methoxy-5-((triisopropylsilyl)oxy)phenyl)carbamoyl)oxy)methyl)phenyl)amino)-1-oxopropan-2-yl)amino)-3-methyl-1-oxobutan-2-yl)carbamate
(76)
[0264] The silyl ether
75 (1.49 g, 1.52 mmol, 1.0 eq) was dissolved in a 7:1:1:2 mixture of acetic acid/ methanol/
tetrahydrofuran/ water (14:2:2:4 mL) and allowed to stir at room temperature. After
2 hours the reaction was diluted with EtOAc (100 mL), washed sequentially with water,
aq. sodium bicarbonate then brine. The organic phase was then dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 100/0 then 99/1 to 92/8 v/v DCM/ MeOH) to afford the product
as an orange solid (1.2 g, 92%). LC/MS (3.649 min (ES
+)),
m/
z: 865.44 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 8.44 (s, 1H), 8.35 (s, 1H), 7.69 (br s, 1H), 7.53 (d, 2H,
J = 8.7 Hz), 7.32 (d, 2H,
J = 8.3 Hz), 6.78 (s, 1H), 6.56 (m, 2H), 6.32 (br s, 1H), 6.05 (d, 1H,
J = 14.9 Hz), 5.90 (m, 1H), 5.56 (m, 1H), 5.30 (m, 2H), 5.22 (m, 1H), 5.10 (d, 2H,
J = 3.1 Hz), 4.73 (m, 1H), 4.64 (m, 1H), 4.57 (d, 2H,
J = 5.8 Hz), 4.01 (m, 1H), 3.79 (m, 2H), 3.76 (s, 3H), 2.98 (dd, 1H,
J = 16.3, 10.2 Hz), 2.38 (dd, 1H,
J = 16.6, 4.1 Hz), 2.16 (m, 1H), 1.78 (dd, 3H,
J = 6.8, 0.9 Hz), 1.46 (d, 3H,
J = 7.1 Hz), 1.29 (m, 3H), 1.11 (d, 18H,
J = 7.4 Hz), 0.97 (d, 3H,
J = 6.7 Hz), 0.92 (d, 3H,
J = 6.8 Hz).
(c) (11S,11aS)-4-((S)-2-((S)-2-(allyloxycarbonylamino)-3-methylbutanamido)propanamido)benzyl
11-hydroxy-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-8-(triisopropylsilyloxy)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(77)
[0265] Dry dimethyl sulfoxide (0.180 g, 2.3 mmol, 3.0 eq) was added dropwise to a solution
of oxalyl chloride (0.147 g, 1.1mmol, 1.5 eq) in DCM (10 mL) at -78°C under an atmosphere
of nitrogen. Maintaining the temperature at -78°C, after 20 minutes, a solution of
the primary alcohol
76 (0.666 g, 0.77 mmol, 1.0 eq) in DCM (10 mL) was added dropwise. After a further 15
minutes, dry triethylamine (0.390 g, 3.85 mmol, 5.0 eq) was added, and the reaction
mixture allowed to warm to room temperature. The reaction mixture was washed successively
with cold 0.1N HCI (10 mL), saturated sodium hydrogen carbonate (10 mL) and brine
(5 mL). The organic layer was then dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was then purified
by flash chromatography (silica gel, 50/50 v/v
n-hexane/EtOAc to 25/75 v/v
n-hexane/EtOAc) to afford the product as a white solid (0.356g, 54 %). LC/MS (3.487
min (ES
+)),
m/
z: 862.2 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 8.34 (br s, 1H), 7.47 (d, 2H,
J = 7.6 Hz), 7.17 (s, 1H), 7.14 (d, 2H,
J = 7.5 Hz), 6.86 (br s, 1H), 6.65 (br s, 1H), 6.42 (d, 1H,
J = 7.6 Hz), 6.22 (d, 1H,
J = 14.4 Hz), 5.80 (m, 1H), 5.40 (m, 1H), 5.53 (m, 1H), 5.32 (m, 1H), 5.21 (d, 2H,
J = 9.6 Hz), 5.06 (d, 1H,
J = 12.3 Hz), 4.90 (m, 1H), 4.58 (m, 3H), 3.98 (m, 1H), 3.84 (m, 1H), 3.81 (s, 3H),
3.50 (m, 1H), 3.05 (dd, 1H,
J = 16.0, 10.3 Hz), 2.76 (m, 1H), 2.15(m, 1H), 1.80 (dd, 3H,
J = 6.7, 0.8 Hz), 1.44 (d, 3H,
J = 7.1 Hz), 1.16 (m, 3H), 1.01 (d, 18H,
J = 6.6 Hz), 0.96 (d, 3H,
J = 6.8 Hz), 0.92 (d, 3H,
J = 6.8 Hz).
(d) (11S,11aS)-4-((S)-2-((S)-2-(allyloxycarbonylamino)-3-methylbutanamido)propanamido)benzyl
11-(tert-butyldimethylsilyloxy)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-8-(triisopropylsilyloxy)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(78)
[0266] Tert-butyldimethylsilyltrifluoromethane sulfonate (0.46 g, 1.74mmol, 3.0 eq) was
added to a solution of secondary alcohol
77 (0.5 g, 0.58 mmol, 1.0 eq) and 2,6-lutidine (0.25 g, 2.32 mmol, 4.0 eq) in dry DCM
(10 mL) at 0°C under an atmosphere of nitrogen. After 10 minutes, the reaction mixture
was allowed to warm to room temperature and stirred for a further 120 mins. The organic
phase was then washed successively with water (10 mL), saturated sodium bicarbonate
(10 mL) and brine (5 mL), dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 50/50 v/v
n-hexane/EtOAc) to afford the product as a white solid (0.320 g, 57 %). LC/MS (4.415
min (ES
+)),
m/
z: 976.52 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 8.31 (br s, 1H), 7.48 (d, 2H,
J = 8.0 Hz), 7.21 (s, 1H), 7.14 (d, 2H,
J = 8.3 Hz), 6.89 (s, 1H), 6.65 (s, 1H), 6.38 (d, 1H,
J = 7.3 Hz), 6.25 (d, 1H,
J = 14.6 Hz), 5.93 (m, 1H), 5.85 (d, 1H,
J = 8.8 Hz), 5.50 (m, 1H), 5.34 (m, 1H), 5.24 (m, 2H), 5.15 (d, 1H,
J = 12.5 Hz), 4.86 (d, 1H,
J = 12.2 Hz), 4.62 (m, 3H), 4.01 (m, 1H), 3.86 (s, 3H), 3.78 (m, 1H), 3.04 (m, 1H),
2.56 (m, 1H), 2.20 (m, 1H), 1.84 (dd, 3H,
J = 6.6, 0.7 Hz), 1.48 (d, 3H,
J = 6.8 Hz), 1.20 (m, 3H), 1.05 (d, 9H,
J = 2.9 Hz), 1.03 (d, 9H,
J = 2.9 Hz), 0.99 (d, 3H,
J = 6.8 Hz), 0.95 (d, 3H,
J = 6.8 Hz), 0.88 (s, 9H), 0.27 (s, 3H), 0.14 (s, 3H).
(e) (11S,11aS)-4-((S)-2-((S)-2-(allyloxycarbonylamino)-3-methylbutanamido)propanamido)benzyl
11-(tert-butyldimethylsilyloxy)-8-hydroxy-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(79)
[0267] Lithium acetate dihydrate (0.010 g, 0.10 mmol, 1.0 eq) was added to a solution of
the silyl ether
78 (0.100 g, 0.10 mmol, 1.0 eq) in wet DMF (2 mL) at 25°C for 3 hours. The reaction
mixture was then diluted with ethyl acetate (20 mL) and washed successively with 0.1M
citric acid (20 mL, pH 3), water (20 mL) and brine (5 mL), dried over MgSO
4, filtered and concentrated under reduced pressure. The residue was purified by flash
chromatography (silica gel, 5/95 v/v methanol/DCM) to afford the product as a pale
yellow oil (0.070 g, 83 %). LC/MS (3.362 min (ES
+)),
m/
z: 820.2 [M+H]
+.
1H NMR (400 MHz, CDCl
3) δ 8.39 (s, 1H), 7.48 (d, 2H,
J = 8.2 Hz), 7.25 (s, 1H), 7.12 (d, 2H,
J = 8.1 Hz), 6.88 (s, 1H), 6.68 (s, 1H), 6.47 (d, 1H,
J = 7.6 Hz), 6.24 (d, 1H,
J = 15.2 Hz), 6.03 (s, 1H), 5.92 (m, 1H), 5.84 (d, 1H,
J = 8.9 Hz), 5.50 (m, 1H), 5.34 (m, 1H), 5.26 (m, 2H), 5.18 (d, 1H,
J = 12.3 Hz), 4.80 (d, 1H,
J = 12.4 Hz), 4.66 - 4.60 (m, 3H), 4.02 (m, 1H), 3.95 (s, 3H), 3.81 (m, 1H), 3.03 (m,
1H), 2.57 (m, 1H), 2.19 (m, 1H), 1.84 (dd, 3H,
J = 6.8, 0.8 Hz), 1.48 (d, 3H,
J = 7.1 Hz), 1.00 (d, 3H,
J = 6.8 Hz), 0.95 (d, 3H,
J = 6.8 Hz), 0.87 (s, 9H), 0.26 (s, 3H), 0.12 (s, 3H).
(iv) (11S,11aS)-4-((20S,23S)-1-iodo-20-isopropyl-23-methyl-2,18,21-trioxo-6,9,12,15-tetraoxa-3,19,22-triazatetracosanamido)benzyl
11-hydroxy-7-methoxy-8-(3-((S)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yloxy)propoxy)-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(66, D)
[0268]

(a) (11S,11aS)-allyl 8-(3-((11S,11aS)-10-((4-((R)-2-((R)-2-(allyloxycarbonylamino)-3-methylbutanamido)propanamido)benzyloxy)carbonyl)-11-(tert-butyldimethylsilyloxy)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yloxy)propoxy)-11-(tert-butyldimethylsilyloxy)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(80)
[0269] Potassium carbonate (0.030 g, 0.21 mmol, 1.0 eq) was added to a solution of the phenol
79 (0.175 g, 0.21 mmol, 1.0 eq) and the iodo linker
74 (0.214 g, 0.32 mmol, 1.5 eq) in acetone (10 mL). The reaction mixture was heated
under a nitrogen atmosphere at 75°C in a sealed flask for 17 hours. The reaction mixture
was concentrated to dryness under reduced pressure and purified by flash chromatography
(silica gel, 2/98 v/v methanol/DCM to 5/95 v/v methanol/DCM) to afford the product
as a pale yellow solid (0.100 g, 35%). LC/MS (4.293 min (ES
+)),
m/
z: 1359.13 [M]
+.
(b) (11S,11as)-allyl 8-(3-((11S,11aS)-10-((4-((R)-2-((R)-2-(allyloxycarbonylamino)-3-methylbutanamido)propanamido)benzyloxy)carbonyl)-11-hydroxy-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-5,10,11,11a-tetrahydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yloxy)propoxy)-11-hydroxy-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(81)
[0270] Tetra-n-butylammonium fluoride (1M, 0.22 mL, 0.22 mmol, 2.0 eq) was added to a solution
of silyl ether
80 (0.150 g, 0.11 mmol, 1.0 eq) in dry THF (2 mL). The reaction mixture was stirred
at room temperature for 20 minutes, after which LC/MS indicated complete reaction.
The reaction mixture was diluted with ethyl acetate (10 mL) and washed sequentially
with water (5 mL) and brine (5 mL). The organic phase was dried over MgSO
4, filtered and concentrated under reduced pressure to leave a yellow solid. Purification
by flash chromatography (silica gel, 6/94 v/v methanol/DCM to 10/90 v/v methanol/DCM)
afforded the product as a pale yellow solid (0.090 g, 73%). LC/MS (2.947 min (ES
+)),
m/
z: 1154.0 [M+Na]
+.
1H NMR (400 MHz, CDCl
3) δ 8.39 (br s, 1H), 7.39 (d, 2H,
J = 7.6 Hz), 7.18 (d, 2H,
J = 10.6 Hz), 7.10 (m, 3H), 6.86 (d, 2H,
J = 10.0 Hz), 6.74 (s, 1H), 6.55 (s, 1H), 6.22 (dd, 2H,
J = 15.3, 6.6 Hz), 5.85 (m, 2H), 5.74 (m, 3H), 5.52 (m, 2H), 5.22 (m, 1H), 5.00 (m,
2H), 4.57 (m, 6H), 4.41 (m, 2H), 4.09 (m, 4H), 3.85 (m, 11H), 3.06 (m, 2H), 2.76 (m,
2H), 2.20 (m, 2H), 2.08 (m, 1H), 1.79 (d, 6H,
J = 6.4 Hz), 1.40 (d, 3H,
J = 6.1 Hz), 0.90 (m, 6H).
(c) (11S,11aS)-4-((R)-2-((R)-2-amino-3-methylbutanamido)propanamido)benzyl 11-hydroxy-7-methoxy-8-(3-((S)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yloxy)propoxy)-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(65)
[0271] Tetrakis(triphenylphospene)palladium(0) (0.005 g, 0.005 mmol, 0.06 eq) was added
to a solution of the bis-carbinolamine
81 (0.090 g, 0.08 mmol, 1.0 eq) and pyrrolidine (16 µL, 0.20 mmol, 2.5 eq) in dry DCM
(5 mL). After 20 minutes, the reaction mixture was diluted with DCM (10 mL) and washed
sequentially with saturated ammonium chloride (5 mL) and brine (5 mL), dried over
MgSO
4, filtered and the solvent was removed under reduced pressure to leave the crude product
as a pale yellow solid which was used in the next step without further purification
(0.075 g, assumed 100% yield). LC/MS (2.060 min (ES
+)),
m/
z: 947.2 [M+H]
+.
(d) (11S,11aS)-4-((20S,23S)-1-iodo-20-isopropyl-23-methyl-2,18,21-trioxo-6,9,12,15-tetraoxa-3,19,22-triazatetracosanamido)benzyl
11-hydroxy-7-methoxy-8-(3-((S)-7-methoxy-5-oxo-2-((E)-prop-1-enyl)-5,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepin-8-yloxy)propoxy)-5-oxo-2-((E)-prop-1-enyl)-11,11a-dihydro-1H-benzo[e]pyrrolo[1,2-a][1,4]diazepine-10(5H)-carboxylate
(66, D)
[0272] EDCI (0.015 g, 0.08 mmol, 1.0 eq) was added to a solution of amine
65 (assumed 100% yield 0.075 g, 0.08 mmol, 1.0 eq) and iodoacetamide-PEG
4-acid
I7 (0.034 g, 0.08 mmol, 1.0 eq) in dry dichloromethane (5 mL) and the reaction was stirred
in the dark. After 50 minutes, a further amount of iodoacetamide-PEG
4-acid
I7 (0.007 g, 0.016 mmol, 0.2 eq) was added along with a further amount of EDCI (0.003
g, 0.016 mmol, 0.2 eq). After a total of 2.5 hours, the reaction mixture was diluted
with dichloromethane (15 mL) and washed sequentially with water (10 mL) and brine
(10 mL). The organic phase was dried over MgSO
4, filtered and concentrated under reduced pressure. The resulting residue was purified
by flash chromatography (silica gel, Chloroform 100% to 90:10 v/v Chloroform:Methanol).
Pure fractions were combined to afford the product (0.0254 g, 23%, 2 steps). The crude
fractions were collected and purified by preparative TLC (silica gel, 90:10 v/v Chloroform:Methanol)
to afford a second batch of product (0.0036 g, 3%, 2 steps). LC/MS (2.689 min (ES
+)),
m/
z: 681.0 1/2[M+2H]
+.
Example 10: Activity of released compounds
K562 assay
[0273] K562 human chronic myeloid leukaemia cells were maintained in RPM1 1640 medium supplemented
with 10% fetal calf serum and 2 mM glutamine at 37°C in a humidified atmosphere containing
5% CO
2 and were incubated with a specified dose of drug for 1 hour or 96 hours at 37°C in
the dark. The incubation was terminated by centrifugation (5 min, 300 g) and the cells
were washed once with drug-free medium. Following the appropriate drug treatment,
the cells were transferred to 96-well microtiter plates (10
4 cells per well, 8 wells per sample). Plates were then kept in the dark at 37°C in
a humidified atmosphere containing 5% CO
2. The assay is based on the ability of viable cells to reduce a yellow soluble tetrazolium
salt, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2
H-tetrazolium bromide (MTT, Aldrich-Sigma), to an insoluble purple formazan precipitate.
Following incubation of the plates for 4 days (to allow control cells to increase
in number by approximately 10 fold), 20 µL of MTT solution (5 mg/mL in phosphate-buffered
saline) was added to each well and the plates further incubated for 5 h. The plates
were then centrifuged for 5 min at 300 g and the bulk of the medium pipetted from
the cell pellet leaving 10-20 µL per well. DMSO (200 µL) was added to each well and
the samples agitated to ensure complete mixing. The optical density was then read
at a wavelength of 550 nm on a Titertek Multiscan ELISA plate reader, and a dose-response
curve was constructed. For each curve, an IC
50 value was read as the dose required to reduce the final optical density to 50% of
the control value.
[0274] Compound ReIC has an IC
50 of less than 0.1 pM in this assay.
[0275] Compound ReIE has an IC
50 of 0.425 nM in this assay.
Example 11: Formation of conjugates
General antibody conjugation procedure
[0276] Antibodies are diluted to 1-5 mg/mL in a reduction buffer (examples: phosphate buffered
saline PBS, histidine buffer, sodium borate buffer,TRIS buffer). A freshly prepared
solution of TCEP (tris(2-carboxyethyl)phosphine hydrochloride) is added to selectively
reduce cysteine disulfide bridges. The amount of TCEP is proportional to the target
level of reduction, within 1 to 4 molar equivalents per antibody, generating 2 to
8 reactive thiols. After reduction for several hours at 37°C, the mixture is cooled
down to room temperature and excess drug-linker (
A, B, C, D, E) added as a diluted DMSO solution (final DMSO content of up to 10% volume/volume
of reaction mixture). The mixture was gently shaken at either 4°C or room temperature
for the appropriate time, generally 1-3 hours. Excess reactive thiols can be reacted
with a 'thiol capping reagent' like N-ethyl maleimide (NEM) at the end of the conjugation.
Antibody-drug conjugates are concentrated using centrifugal spin-filters with a molecular
weight cut-off of 10 kDa or higher, then purified by tangential flow filtration (TFF)
or Fast Protein Liquid Chromatography (FPLC). Corresponding antibody-drug conjugates
can be determined by analysis by High-Performance Liquid Chromatography (HPLC) or
Ultra-High-Performance Liquid Chromatography (UHPLC) to assess drug-per-antibody ratio
(DAR) using reverse-phase chromatography (RP) or Hydrophobic-Interaction Chromatography
(HIC), coupled with UV-Visible, Fluorescence or Mass-Spectrometer detection; aggregate
level and monomer purity can be analysed by HPLC or UHPLC using size-exclusion chromatography
coupled with UV-Visible, Fluorescence or Mass-Spectrometer detection. Final conjugate
concentration is determined by a combination of spectroscopic (absorbance at 280,
214 and 330 nm) and biochemical assay (bicinchonic acid assay BCA;
Smith, P.K., et al. (1985) Anal. Biochem. 150 (1): 76-85; using a known-concentration IgG antibody as reference). Antibody-drug conjugates
are generally sterile filtered using 0.2 µm filters under aseptic conditions, and
stored at +4°C, -20°C or -80°C.
DAR Determination
[0277] Antibody or ADC (ca. 35 µg in 35 µL) was reduced by addition of 10 µL borate buffer
(100 mM, pH 8.4) and 5 µL DTT (0.5 M in water), and heated at 37°C for 15 minutes.
The sample was diluted with 1 volume of acetonitrile: water: formic acid (49%: 49%:
2% v/v), and injected onto a Widepore 3.6µ XB-C18 150 x 2.1 mm (P/N 00F-4482-AN) column
(Phenomenex Aeris) at 80°C, in a UPLC system (Shimadzu Nexera) with a flow rate of
1 ml/min equilibrated in 75% Buffer A (Water, Trifluoroacetic acid (0.1% v/v) (TFA),
25% buffer B (Acetonitrile: water: TFA 90%: 10%: 0.1% v/v). Bound material was eluted
using a gradient from 25% to 55% buffer B in 10 min. Peaks of UV absorption at 214
nm were integrated. The following peaks were identified for each ADC or antibody:
native antibody light chain (L0), native antibody heavy chain (H0), and each of these
chains with added drug-linkers (labelled L1 for light chain with one drug and H1,
H2, H3 for heavy chain with 1, 2 or 3 attached drug-linkers). The UV chromatogram
at 330 nm was used for identification of fragments containing drug-linkers (i.e.,
L1, H1, H2, H3).
[0278] A PBD/protein molar ratio was calculated for both light chains and heavy chains:

[0279] Final DAR is calculated as:

[0280] DAR measurement is carried out at 214 nm because it minimises interference from drug-linker
absorbance.
Generation of ADCs against PSMA
[0281] Antibody A (comprising a variable domain which is SEQ ID NO. 3 paired with SEQ ID
NO. 4) was conjugated with drug linker A to give Conj A-A, and the DAR was measured
to be 2.62.
[0282] Antibody A (comprising a variable domain which is SEQ ID NO. 3 paired with SEQ ID
NO. 4) was conjugated with drug linker B to give Conj A-B, and the DAR was measured
to be 2.43.
[0283] Antibody A (comprising a variable domain which is SEQ ID NO. 3 paired with SEQ ID
NO. 4) was conjugated with drug linker D to give Conj A-D, and the DAR was measured
to be 2.35.
[0284] Antibody A (comprising a variable domain which is SEQ ID NO. 3 paired with SEQ ID
NO. 4) was conjugated with drug linker E to give Conj A-E, and the DAR was measured
to be 2.34.
[0285] Additional ADCs are described below.
[0286] deJ591 is an anti-PSMA antibody comprising a VH domain having the sequence according
to SEQ ID NO. 3 and a VL domain having the sequence according to SEQ ID NO. 4.
[0287] ADCs targeted to PSMA were generated by conjugating deJ591 antibodies to the drug
linker A, E or D. The resulting ADCs are listed in the table below, alongside the
measured DAR. B12 anti-HIV gp120 antibody was used to generate control non-PSMA targeted
ADCs.
ADC |
DAR |
Concentration [mg/ml] |
Yield [%] |
deJ591-A |
2.35 |
2.72 |
66 |
deJ591-E |
2.76 |
2.65 |
72 |
deJ591-D |
2.0 |
1.42 |
59 |
B12-A |
2.06 |
1.47 |
49 |
B12-E |
1.88 |
1.34 |
68 |
B12-D |
2.26 |
1.17 |
48 |
EXAMPLE 12: in vitro cytotoxicity of ADCs
Cell Culture
[0288] LNCaP and PC3 cells were a generous gift from Professor John Hartley (UCL) Cell culture
medium was RPMI 1640 supplemented with L-Glutamine and 10% FBS. Cells were grown at
37°C, 5% CO
2, in a humidified incubator.
Cytotoxicity assay
[0289] The concentration and viability of cultures of suspended cells (at up to 1 × 10
6/ml) were determined by mixing 1:1 with Trypan blue and counting clear (live)/blue
(dead) cells with a haemocytometer. The cell suspension was diluted to the required
seeding density (generally 10
5/ml) and dispensed into 96-well flat bottomed plates. For Alamar blue assay, 100 µl/well
was dispensed in black-well plates. For MTS assay, 50 µl/well was dispensed in clear-well
plates. A stock solution (1 ml) of ADC (20 µg/ml) was made by dilution of filter-sterile
ADC into cell culture medium. A set of 8 x 10-fold dilutions of stock ADC were made
in a 24 well plate by serial transfer of 100 µl onto 900 µl of cell culture medium.
Each ADC dilution (100 µl/well for Alamar blue, 50 µl/well for MTS) was dispensed
into 4 replicate wells of the 96-well plate, containing cell suspension. Control wells
received the same volume of culture medium only. After incubation for 4 days, cell
viability was measured by either Alamar blue or MTS assay.
[0290] AlamarBlue® (Invitrogen, catalogue number DAL1025) was dispensed (20 µl per well)
into each well and incubated for 4 hours at 37°C in the CO
2-gassed incubator. Well fluorescence was measured at excitation 570 nm, emission 585
nm. Cell survival (%) was calculated from the ratio of mean fluorescence in the 4
ADC-treated wells compared to the mean fluorescence in the 4 control wells (100%).
[0291] MTS (Promega, catalogue number G5421) was dispensed (20 µl per well) into each well
and incubated for 4 hours at 37°C in the CO
2-gassed incubator. Absorbance was measured at 490 nm. Cell survival (%) was calculated
from the mean absorbance in the 4 ADC-treated wells compared to the mean absorbance
in the 4 control wells (100%). Dose response curves were generated from the mean data
of 3 replicate experiments and the EC
50 was determined by fitting data to a sigmoidal dose-response curve with variable slope
using Prism (GraphPad, San Diego, CA).
In vitro cytotoxicity
[0292] The efficacy of the above deJ591 ADCs was tested against LNCaP cells. As a PSMA-negative
control, PC3 cells were used.
[0293] Figure 1 shows the
in vitro efficacy of deJ591 ADCs in LNCaP cells. Serial 10-fold dilutions (µg/mL) of the deJ591
ADCs were incubated with LNCap cells. The Alamar Blue assay was performed at the end
of the incubation period and cell survival calculated. Graphs represent the average
of three replicate experiments.
[0294] All three of the tested deJ591 ADCs showed significant cytotoxicity against LNCaP
cells (Figure 1):
|
deJ591-A |
deJ591-E |
deJ591-D |
EC50 µg/mL |
0.01856 |
0.006856 |
0.004897 |
[0295] The same experiment repeated with the PSMA -ve cells, PC3, showed no concentration
dependent cytotoxicity (Figure 2).
[0296] Anti-HIV gp120 antibody, B12, linked to the same warheads were used as negative control
ADCs. As above, serial 10-fold dilutions (µg/mL) of the B12 ADCs were incubated with
LNCap cells. The Alamar Blue assay was performed at the end of the incubation period
and cell survival calculated. Graphs in Figures 3 and 4 represent the average of three
replicate experiments.
[0297] The three non-binding B12 ADCs conjugates showed significantly less potency than
the equivalent deJ591 conjugates with A, E and D respectively (Figure 3). The same
experiment repeated with the PSMA -ve cells, PC3, again showed no concentration dependent
cytotoxicity (Figure 4).
EXAMPLE 13 - in vivo anti-tumour activity of ADCs
[0298] The PSMA +(ve) human prostate cancer-derived cell line LNCaP was used to assess the
in vivo efficacy of the deJ591-A ADC in a mouse xenograft model. As non-PSMA-binding controls,
the anti-HIV gp120 antibody, B12, linked to the same drug linker was used.
Study design
[0299] Drugs and treatment:
Group No |
Animals per group |
ADC |
Dose level (mg/kg) |
Dose volume (ml/kg) |
1 |
10 |
[vehicle only] |
- |
- |
2 |
10 |
deJ591-A |
0.3 |
10 |
3 |
10 |
deJ591-A |
1.0 |
10 |
4 |
10 |
B12-A |
0.3 |
10 |
5 |
10 |
B12-A |
1.0 |
10 |
Procedures:
[0300]
- Set up CR female NCr nu/nu mice with I xl LNCaP-SPN tumor cells in 0%
Matrigel sc in flank.
- Cell Injection Volume is 0.1 mL/mouse.
- Age at Start Date: 8 to 12 weeks.
- Perform a pair match when tumors reach an average size of 100 - 150 mm3 and begin treatment.
- Body Weight: qd x 5 then bi-wk to end
- Caliper Measurement: bi-wk to end
- Report any adverse reactions or death immediately.
- Any individual animal with a single observation of >30% body weight loss or three
consecutive measurements of >25% body weight loss will be euthanized.
- Any group with two measurements of mean body weight loss of >20% or > 10% mortality
will stop dosing. The group is not euthanized and recovery is allowed. Within a group
with >20% weight loss, individuals hitting the individual body weight loss endpoint
will be euthanized. If the group treatment related body weight loss is recovered to
within 10% of the original weights, dosing may resume at a lower dose or less frequent
dosing schedule. Exceptions to non-treatment body weight% recovery may be allowed
on a case-by-case basis.
- Endpoint TGD. Animals are to be monitored individually. The endpoint of the experiment
is a tumor volume of 2000mm3 or 60 days, whichever comes first. Responders can be followed longer. When the endpoint
is reached, the animals are to be euthanized.
General methodological approach
[0301] For the calculation of group mean tumor volumes the following rule was applied: when
an animal exited the study due to tumor size, the final tumor volume recorded for
the animal was included with the data used to calculate the mean volume at subsequent
time points. Error bars indicate standard error of the mean (SEM). Tumor volumes values
were not used to calculate group mean tumor volumes when fewer than 50% of the animals
in a group remained in the study. Prism (GraphPad, San Diego, CA) was used for graphical
presentations and statistical analyses.
Results
[0302] Figure 5 shows deJ591-A in a LNCaP xenograft model. Mice were dosed when the mean
tumor volume per experimental group reached 0.1 cm
3 and they were treated with a single dose of the ADCs at 0.3 and 1 mg/kg via IV in
the tail vein. Data represent the mean tumour volume (+/- SEM) from ten mice in each
group.
[0303] deJ591-A at both concentrations exhibited potent anti-tumor activity (Figure 5).
The deJ591-A showed significantly greater anti-tumor activity than the non-binding
ADC control (B12-A).
Abbreviations
[0304]
- Ac
- acetyl
- Acm
- acetamidomethyl
- Alloc
- allyloxycarbonyl
- Boc
- di-tert-butyl dicarbonate
- t-Bu
- tert-butyl
- Bzl
- benzyl, where Bzl-OMe is methoxybenzyl and Bzl-Me is methylbenzene
- Cbz or Z
- benzyloxy-carbonyl, where Z-Cl and Z-Br are chloro- and bromobenzyloxy carbonyl respectively
- DMF
- N,N-dimethylformamide
- Dnp
- dinitrophenyl
- DTT
- dithiothreitol
- Fmoc
- 9H-fluoren-9-ylmethoxycarbonyl
- imp
- N-10 imine protecting group: 3-(2-methoxyethoxy)propanoate-Val-Ala-PAB
- MC-OSu
- maleimidocaproyl-O-N-succinimide
- Moc
- methoxycarbonyl
- MP
- maleimidopropanamide
- Mtr
- 4-methoxy-2,3,6-trimethtylbenzenesulfonyl
- PAB
- para-aminobenzyloxycarbonyl
- PEG
- ethyleneoxy
- PNZ
- p-nitrobenzyl carbamate
- Psec
- 2-(phenylsulfonyl)ethoxycarbonyl
- TBDMS
- tert-butyldimethylsilyl
- TBDPS
- tert-butyldiphenylsilyl
- Teoc
- 2-(trimethylsilyl)ethoxycarbonyl
- Tos
- tosyl
- Troc
- 2,2,2-trichlorethoxycarbonyl chloride
- Trt
- trityl
- Xan
- xanthyl
SEQUENCES