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<ep-patent-document id="EP14761426B9W1" file="EP14761426W1B9.xml" lang="en" country="EP" doc-number="3030665" kind="B9" correction-code="W1" date-publ="20231004" status="c" dtd-version="ep-patent-document-v1-6">
<SDOBI lang="en"><B000><eptags><B001EP>ATBECHDEDKESFRGBGRITLILUNLSEMCPTIESILTLVFIROMKCYALTRBGCZEEHUPLSK..HRIS..MTNORS..SM..................</B001EP><B003EP>*</B003EP><B005EP>J</B005EP><B007EP>BDM Ver 2.0.24 -  2999001/0</B007EP><B050EP><B051EP>en</B051EP><B052EP>The complete document including Reference Table(s) and the Sequence Listing(s) can be downloaded from the EPO website</B052EP></B050EP></eptags></B000><B100><B110>3030665</B110><B120><B121>CORRECTED EUROPEAN PATENT SPECIFICATION</B121></B120><B130>B9</B130><B132EP>B1</B132EP><B140><date>20231004</date></B140><B150><B151>W1</B151><B154><B1541>de</B1541><B1542>Bemerkungen</B1542><B1541>en</B1541><B1542>Remarks</B1542><B1541>fr</B1541><B1542>Remarques</B1542><B1541>de</B1541><B1542>Sequenzliste ersetzt oder hinzugefügt</B1542><B1541>en</B1541><B1542>Sequence listing replaced or added</B1542><B1541>fr</B1541><B1542>Listage de séquence remplacé ou ajouté</B1542></B154><B155><B1551>de</B1551><B1552>Sequenzliste</B1552><B1551>en</B1551><B1552>Sequence listing</B1552><B1551>fr</B1551><B1552>Listage de séquence</B1552></B155></B150><B190>EP</B190></B100><B200><B210>14761426.7</B210><B220><date>20140805</date></B220><B240><B241><date>20160202</date></B241><B242><date>20180611</date></B242></B240><B250>en</B250><B251EP>en</B251EP><B260>en</B260></B200><B300><B310>13179254</B310><B320><date>20130805</date></B320><B330><ctry>EP</ctry></B330></B300><B400><B405><date>20231004</date><bnum>202340</bnum></B405><B430><date>20160615</date><bnum>201624</bnum></B430><B450><date>20230607</date><bnum>202323</bnum></B450><B452EP><date>20220909</date></B452EP><B480><date>20231004</date><bnum>202340</bnum></B480></B400><B500><B510EP><classification-ipcr sequence="1"><text>C12N  15/86        20060101AFI20150218BHEP        </text></classification-ipcr><classification-ipcr sequence="2"><text>A61K  48/00        20060101ALI20150218BHEP        </text></classification-ipcr><classification-ipcr sequence="3"><text>C07K  14/47        20060101ALI20150218BHEP        </text></classification-ipcr></B510EP><B520EP><classifications-cpc><classification-cpc sequence="1"><text>A61K  48/005       20130101 LI20140110BHEP        </text></classification-cpc><classification-cpc sequence="2"><text>C07K  14/47        20130101 LI20140110BHEP        </text></classification-cpc><classification-cpc sequence="3"><text>C12N  15/86        20130101 LI20140110BHEP        </text></classification-cpc><classification-cpc sequence="4"><text>C12N2750/14143     20130101 LA20140110BHEP        </text></classification-cpc><classification-cpc sequence="5"><text>C12N2750/14171     20130101 LA20140110BHEP        </text></classification-cpc><classification-cpc sequence="6"><text>A01K  67/0276      20130101 FI20160620BHEP        </text></classification-cpc><classification-cpc sequence="7"><text>A01K2217/075       20130101 LA20160620BHEP        </text></classification-cpc><classification-cpc sequence="8"><text>A01K2217/203       20130101 LA20160620BHEP        </text></classification-cpc><classification-cpc sequence="9"><text>A01K2227/105       20130101 LA20160620BHEP        </text></classification-cpc><classification-cpc sequence="10"><text>A01K2267/03        20130101 LA20160620BHEP        </text></classification-cpc><classification-cpc sequence="11"><text>C12N2830/48        20130101 LA20160620BHEP        </text></classification-cpc><classification-cpc sequence="12"><text>A61P  27/02        20180101 LI20200324BHEP        </text></classification-cpc></classifications-cpc></B520EP><B540><B541>de</B541><B542>REKOMBINANTE HOMOLOGE AAV-KRÜMEL-ZUSAMMENSETZUNG UND VERFAHREN ZUR BEHANDLUNG VON LCA-8 UND PROGRESSIVER RP</B542><B541>en</B541><B542>RECOMBINANT AAV-CRUMBS HOMOLOGUE COMPOSITION AND METHODS FOR TREATING LCA-8 AND PROGRESSIVE RP</B542><B541>fr</B541><B542>COMPOSITION HOMOLOGUE DE MIETTES AAV RECOMBINANTE ET PROCÉDÉS POUR TRAITER LE LCA-8 RP ET RP PROGRESSIF</B542></B540><B560><B562><text>ALVES CELSO HENRIQUE ET AL: "Loss of CRB2 in the mouse retina mimics human retinitis pigmentosa due to mutations in the CRB1 gene", HUMAN MOLECULAR GENETICS, vol. 22, no. 1, January 2013 (2013-01), pages 35-50, XP002718540, cited in the application</text></B562><B562><text>WIJNHOLDS, J. ET AL.: "AAV6 FOR TRANSDUCTION OF HUMAN AND MOUSE MÜLLER GLIA CELLS", GLIA, vol. 57, no. S13, P278, 24 August 2009 (2009-08-24), pages S93-S93, XP055068951, ISSN: 0894-1491, DOI: 10.1002/glia.20915</text></B562><B562><text>AARTSEN W M ET AL: "GFAP-driven GFP expression in activated mouse Müller glial cells aligning retinal blood vessels following intravitreal injection of AAV2/6 vectors", PLOS ONE, PUBLIC LIBRARY OF SCIENCE, US, vol. 5, no. 8, 24 August 2010 (2010-08-24) , pages e12387-1, XP002714130, ISSN: 1932-6203, DOI: 10.1371/JOURNAL.PONE.0012387 cited in the application</text></B562><B562><text>VAN DEN HURK JOSE A J M ET AL: "Characterization of the Crumbs homolog 2 (CRB2) gene and analysis of its role in retinitis pigmentosa and Leber congenital amaurosis", MOLECULAR VISION, vol. 11, no. 30-31, April 2005 (2005-04), pages 263-273, XP002718541, ISSN: 1090-0535 cited in the application</text></B562><B562><text>CREMERS F P M ET AL: "Molecular genetics of leber congenital amaurosis", HUMAN MOLECULAR GENETICS, OXFORD UNIVERSITY PRESS, SURREY, vol. 11, no. 10, 1 January 2002 (2002-01-01), pages 1169-1176, XP002954647, ISSN: 0964-6906, DOI: 10.1093/HMG/11.10.1169 cited in the application</text></B562><B562><text>BAINBRIDGE JAMES W B ET AL: "Effect of gene therapy on visual function in Leber's congenital amaurosis", NEW ENGLAND JOURNAL OF MEDICINE, vol. 358, no. 21, May 2008 (2008-05), pages 2231-2239, XP002718542, ISSN: 0028-4793 cited in the application</text></B562><B562><text>MICHAEL F. NASO ET AL: "Adeno-Associated Virus (AAV) as a Vector for Gene Therapy", BIODRUGS, vol. 31, no. 4, 1 July 2017 (2017-07-01), pages 317-334, XP055547503, NZ ISSN: 1173-8804, DOI: 10.1007/s40259-017-0234-5</text></B562></B560></B500><B700><B720><B721><snm>WIJNHOLDS, Jan</snm><adr><city>2215 ZA, Voorhout</city><ctry>NL</ctry></adr></B721><B721><snm>PELLISSIER, Lucie Pierrette Françoise</snm><adr><str>13 rue des Lys</str><city>F-37100 Tours</city><ctry>FR</ctry></adr></B721></B720><B730><B731><snm>Academisch Ziekenhuis Leiden H.O.D.N. 
Leids Universitair Medisch Centrum</snm><iid>101566983</iid><adr><str>Albinusdreef 2</str><city>2333 ZA Leiden</city><ctry>NL</ctry></adr></B731></B730><B740><B741><snm>Potter Clarkson</snm><iid>101340609</iid><adr><str>Chapel Quarter 
Mount Street</str><city>Nottingham NG1 6HQ</city><ctry>GB</ctry></adr></B741></B740></B700><B800><B840><ctry>AL</ctry><ctry>AT</ctry><ctry>BE</ctry><ctry>BG</ctry><ctry>CH</ctry><ctry>CY</ctry><ctry>CZ</ctry><ctry>DE</ctry><ctry>DK</ctry><ctry>EE</ctry><ctry>ES</ctry><ctry>FI</ctry><ctry>FR</ctry><ctry>GB</ctry><ctry>GR</ctry><ctry>HR</ctry><ctry>HU</ctry><ctry>IE</ctry><ctry>IS</ctry><ctry>IT</ctry><ctry>LI</ctry><ctry>LT</ctry><ctry>LU</ctry><ctry>LV</ctry><ctry>MC</ctry><ctry>MK</ctry><ctry>MT</ctry><ctry>NL</ctry><ctry>NO</ctry><ctry>PL</ctry><ctry>PT</ctry><ctry>RO</ctry><ctry>RS</ctry><ctry>SE</ctry><ctry>SI</ctry><ctry>SK</ctry><ctry>SM</ctry><ctry>TR</ctry></B840><B860><B861><dnum><anum>NL2014050549</anum></dnum><date>20140805</date></B861><B862>en</B862></B860><B870><B871><dnum><pnum>WO2015020522</pnum></dnum><date>20150212</date><bnum>201506</bnum></B871></B870></B800></SDOBI>
<description id="desc" lang="en"><!-- EPO <DP n="1"> -->
<heading id="h0001"><b>FIELD OF THE INVENTION</b></heading>
<p id="p0001" num="0001">This invention relates to the fields of molecular biology, virology and gene therapy. In particular, the invention relates to the treatment or prophylaxis of a retinal disorder due to mutations in Crumbs homologue-1 (CRB1) in a human subject, using a gene therapy vector comprising a nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein.</p>
<heading id="h0002"><b>BACKGROUND OF THE INVENTION</b></heading>
<p id="p0002" num="0002">Leber's congenital amaurosis (LCA) is the earliest and most severe group of inherited retinopathies, with an incidence of two to three in 100 000 people, and is the most common cause of congenital blindness in children. It is an autosomal recessive or dominant condition recognized in infants during the first months of life. LCA type 8 (LCA8) is inherited recessively. Symptoms of LCA8 patients include nystagmus, slow pupil response, retinal dysfunction, impaired vision and ultimately blindness. The eyes of these blind or severely visually impaired infants show an apparent normal fundus but lack of retinal activity as measured by electroretinography (ERG). At least some LCA8 patients show a thicker retina than normal or other LCA patients. LCA8 patients have mutations or DNA alterations in or affecting the CRB 1 gene locus. LCA8 patients account for 10-15% of all LCA patients.</p>
<p id="p0003" num="0003">Retinitis pigmentosa (RP) is an inherited and severe group of degenerative eye disease that occurs at 1 in 3 000 people and causes severe vision impairment and often results in complete blindness. Severe recessive progressive retinitis pigmentosa occurs in young children that have mutations or DNA alterations in or affecting the Crumbs homologue-1 (<i>CRB1</i>) gene locus. These young children become gradually blind before their twentieth birth day. There is no clear relation between genotype (type of mutation) and phenotype<!-- EPO <DP n="2"> --> (LCA or RP). RP due to mutations in the <i>CRB1</i> gene (RP12) account for 3-5% of all RP patients.</p>
<p id="p0004" num="0004">Mutations in <i>CRB1</i> cause recessive retinitis pigmentosa with para-arteriolar preservation of the RPE (PPRPE), recessive retinitis pigmentosa, recessive Leber congenital amaurosis, or dominant pigmented paravenous chorioretinal atrophy. The symptoms may include Coats-like exudative vasculopathy; mutations result in a thickened retina with abnormal lamination. Genetic analyses showed that LCA is mostly monogenic, but caused by more than 20 genes, including <i>CRB1</i> (∼10-15% of all cases), <i>CEP290</i> (∼20% of all cases), <i>GUCY2D</i> (∼15% of all cases), <i>IMPDH1</i> (∼10% of all cases), <i>RPE65</i> (∼5% of all cases), and the less frequently occurring <i>AIPL1, RPGRIP1, RDH12, NMNAT1, SPATA7, LCA5, CRX, TULPI, MERTK, LRAT, RD3, OTX, CABP4, KCNJ13, IQCB1</i> and others (<nplcit id="ncit0001" npl-type="s"><text>den Hollander et al., 2008. Prog Retin Eye Res. 27(4):391-419</text></nplcit>). Mutations in the <i>CRB1</i> gene are a leading cause of LCA (10-15% of all cases). Genetic analyses showed that RP is caused by more than 50 genes. Mutations in the <i>CRB1</i> gene account for 3-5% of all cases of RP (RP12). The number of patients with LCA8 or RP12 due to mutations in <i>CRB1</i> is about the same as patients with LCA1 due to mutations in the guanylate cyclase 2D (<i>GUCY2D</i>) gene and even twice that of patients with LCA2 due to mutations in the gene coding for retinal pigment epithelium 65 kD protein (RPE65).</p>
<p id="p0005" num="0005">It is estimated that more than 100 000 world citizens have type 8 Leber's congenital amaurosis or RP12. The <i>CRB1</i> gene encodes Crumbs homologue-1 (CRB1) which is expressed in the human retina in photoreceptors and Müller glia cells, as well as in retinal progenitor cells, and localizes adjacent to the adherens junction complex at the outer limiting membrane. CRB1 regulates directly or indirectly the physical interaction between retinal cell types. In the adult human retina, loss of CRB1 results in loss of adhesion between Müller glia cells and photoreceptors, resulting in structural changes such as loss of regular lamination. Ultimately, this leads to loss of rod photoreceptors followed by loss of cone photoreceptors by cell death. In the developing retina, loss of CRB 1 results in loss of adhesion between retinal progenitor cells and newly differentiated photoreceptors and Müller glia cells. Ultimately, the misplaced cells do not form a functional neuronal network and undergo cell death. Loss of CRB1 in the developing<!-- EPO <DP n="3"> --> retina also results in an increase in number of late born retinal cells (rod photoreceptors, Müller glia cells, bipolar cells, late born sub-types of amacrine cells) and an increase in mislocalized retinal cells causing an immature appearance of the retina.</p>
<p id="p0006" num="0006">Presently, there are no therapeutics or effective treatments available to prevent, delay or treat LCA8 or RP12 in humans. Therefore, there is a need in the art for methods and means for the treatment of retinal disorders due to mutations in CRB 1. Preferably, the methods and means have no toxicity or almost no toxicity. In particular, the present invention has sought to provide a gene therapy vector to be used for the treatment of retinal disorders due to mutations in CRB 1.</p>
<heading id="h0003"><b>SUMMARY OF THE INVENTION</b></heading>
<p id="p0007" num="0007">In a first aspect, the present invention relates to a gene therapy vector for use in treatment or prophylaxis of a retinal disorder due to mutations in <i>CRB1</i> gene in a human subject, wherein the gene therapy vector comprises a nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein.</p>
<p id="p0008" num="0008">In one embodiment, the retinal disorder is Leber's congenital amaurosis or retinitis pigmentosa, preferably LCA8 or RP12.</p>
<p id="p0009" num="0009">In one embodiment, the CRB2 protein is a eumetazoan CRB2 protein, preferably a CRB2 protein of human, non-human primate, murine, feline, canine, porcine, ovine, bovine, equine, caprine, or lupine origin, more preferably the CRB2 protein is a human CRB2 protein.</p>
<p id="p0010" num="0010">In one embodiment, the gene therapy vector is a recombinant parvoviral vector or a lentiviral vector, more preferably wherein the vector is a recombinant adeno-associated virus (rAAV) vector.</p>
<p id="p0011" num="0011">In one embodiment, the gene therapy vector is a recombinant adeno-associated virus vector selected from the group consisting of recombinant adeno-associated virus serotype 1 (rAAV1), recombinant adeno-associated virus serotype 2 (rAAV2), recombinant<!-- EPO <DP n="4"> --> adeno-associated virus serotype 3 (rAAV3), recombinant adenoassociated virus serotype 4 (rAAV4), recombinant adeno-associated virus serotype 5 (rAAV5), recombinant adeno-associated virus serotype 6 (rAAV6), recombinant adeno-associated virus serotype 7 (rAAV7), recombinant adeno-associated virus serotype 8 (rAAV8), recombinant adeno-associated virus serotype 9 (rAAV9), serotype variants, for example for enhanced transduction of Müller glia cells, such as rAAV6 ShH10 and ShH10Y, and combinations thereof.</p>
<p id="p0012" num="0012">In one embodiment, the CRB2 protein comprises or consists of an amino acid sequence that has at least 80% sequence identity with the amino acid sequences of any one of SEQ ID NO: 40-63 or 65-83, more preferably any one of SEQ ID NO: 40-42, and wherein preferably the CRB2 protein is functionally active as measured by electroretinography.</p>
<p id="p0013" num="0013">In one embodiment, the nucleotide sequence encoding CRB2 is operably linked to expression control elements comprising a promoter that produces sufficient expression of CRB2 to obtain a therapeutic effect, wherein the promoter preferably is selected from the group consisting of: truncated CMV promoter, CMV promoter, truncated human RLBP1 promoter, human photoreceptor specific rhodopsin kinase promoter, and human rod photoreceptor specific rhodopsin promoter, wherein preferably the promoter is selected from the group consisting of: CMV promoter according to SEQ ID NO: 121, truncated human RLBP1 promoter according to SEQ ID NO: 122, human photoreceptor specific rhodopsin kinase promoter according to SEQ ID NO: 123, human rod photoreceptor specific rhodopsin promoter according to SEQ ID NO: 124 and truncated CMV promoter according to SEQ ID NO: 133.</p>
<p id="p0014" num="0014">In a second aspect, the present invention relates to an AAV vector comprising a nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein and at least one parvoviral inverted terminal repeat (ITR) sequence, wherein the nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein is operably linked to expression control elements comprising a promoter that is capable of sufficient CRB2 protein expression to obtain a therapeutic effect.</p>
<p id="p0015" num="0015">It also relates to the AAV vector comprising a nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein and at least one parvoviral inverted terminal repeat (ITR)<!-- EPO <DP n="5"> --> sequence, for use as a medicament, wherein the nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein is operably linked to expression control elements comprising a promoter that is capable of sufficient CRB2 protein expression to obtain a therapeutic effect.</p>
<p id="p0016" num="0016">In a third aspect, the present invention relates to a virion comprising the AAV vector according to the invention.</p>
<p id="p0017" num="0017">In a fourth aspect, the present invention relates to a host cell comprising the AAV vector according to the invention.</p>
<p id="p0018" num="0018">In a fifth aspect, the present invention relates to a pharmaceutical composition comprising an AAV vector according to the invention, or a virion according to the invention, and a pharmaceutically acceptable excipient.</p>
<p id="p0019" num="0019">In a sixth aspect, the present invention relates to a kit comprising: (a) an AAV vector according to the invention, a virion according to the invention, or a pharmaceutical composition according to claim the invention; and, (b) optionally, instructions for using the AAV vector, virion or pharmaceutical composition according to (a) in the prevention, treatment, or amelioration of one or more symptoms of a retinal disorder due to mutations in <i>CRB1</i> gene.</p>
<heading id="h0004"><b>DESCRIPTION OF THE INVENTION</b></heading>
<heading id="h0005"><b><u>Definitions</u></b></heading>
<p id="p0020" num="0020">In this document and in its claims, the verb <b>"to comprise"</b> and its conjugations is used in its non-limiting sense to mean that items following the word are included, but items not specifically mentioned are not excluded. In addition, reference to an element by the indefinite article <b>"a"</b> or <b>"an"</b> does not exclude the possibility that more than one of the element is present, unless the context clearly requires that there be one and only one of the elements. The indefinite article <b>"a"</b> or <b>"an"</b> thus usually means <b>"at least one".</b><!-- EPO <DP n="6"> --></p>
<p id="p0021" num="0021">An <b>"insect cell",</b> as used herein, refers to an insect cell which allows for replication of a recombinant parvoviral (rAAV) vector and which can be maintained in culture. For example, the cell line used can be from <i>Spodoptera frugiperda, Drosophila</i> cell lines, or mosquito cell lines, <i>e.g., Aedes albopictus-derived</i> cell lines. Preferred insect cells or cell lines are cells from the insect species which are susceptible to baculovirus infection, including, <i>e.g.,</i> Se301, SeIZD2109, SeUCR1, Sf9, Sf900<sup>+</sup>, Sf21, BTI-TN-5B1-4, MG-1, Tn368, HzAm1, Ha2302, Hz2E5, High Five (Invitrogen, CA, USA) and <i>expres</i>SF<sup>+®</sup> (<patcit id="pcit0001" dnum="US6103526A"><text>US 6,103,526</text></patcit>; Protein Sciences Corp., CT, USA). Growing conditions for insect cells in culture, and production of heterologous products in insect cells in culture are well-known in the art and described, <i>e.g.,</i> in the following references on molecular engineering of insect cells. Methodology for molecular engineering and expression of polypeptides in insect cells is described, for example, in <nplcit id="ncit0002" npl-type="s"><text>Summers &amp; Smith (1987). A manual of methods for baculovirus vectors and insect culture procedures (Vol. 1555, Bulletin - Texas Agricultural Experimental Station). College Station, TX</text></nplcit>; <nplcit id="ncit0003" npl-type="b"><text>Luckow (1991). Cloning and expression of heterologous genes in insect cells with baculovirus vectors. InProkop et al., Recombinant DNA Technology &amp; Applications (pp. 97-152). New York, NY: McGraw-Hill, Inc.</text></nplcit>; <nplcit id="ncit0004" npl-type="b"><text>King &amp; Possee (1992). The baculovirus expression system - A laboratory guide. Chapman and Hall, Lond</text></nplcit>on; <nplcit id="ncit0005" npl-type="b"><text>O'Reilly, Miller &amp; Luckow (1992). Baculovirus expression vectors: A laboratory manual. New York, NY: Oxford University Press</text></nplcit>; <nplcit id="ncit0006" npl-type="b"><text>Freeman &amp; Richardson (1995). Baculovirus Expression Protocols (Vol. 39, Methods in molecular biology). Totawa, NJ: Humana Press</text></nplcit>; <patcit id="pcit0002" dnum="US4745051A"><text>US 4,745,051</text></patcit>; <patcit id="pcit0003" dnum="US20030148506A"><text>US 2003-0148506</text></patcit>; and <patcit id="pcit0004" dnum="WO2003074714A"><text>WO 2003/074714</text></patcit>.</p>
<p id="p0022" num="0022">As used herein, the term <b>"operably linked"</b> refers to a linkage of polynucleotide (or polypeptide) elements in a functional relationship. A nucleic acid is <b>"operably linked"</b> when it is placed into a functional relationship with another nucleic acid sequence. For instance, a transcription regulatory sequence is operably linked to a coding sequence if it affects the transcription of the coding sequence. Operably linked means that the DNA sequences being linked are typically contiguous and, where necessary to join two protein encoding regions, contiguous and in reading frame. The phrase <b>"under control of"</b> is used interchangeably herein.<!-- EPO <DP n="7"> --></p>
<p id="p0023" num="0023"><b>"Expression control sequence"</b> refers to a nucleic acid sequence that regulates the expression of a nucleotide sequence to which it is operably linked. An expression control sequence is "operably linked" to a nucleotide sequence when the expression control sequence controls and regulates the transcription and/or the translation of the nucleotide sequence. Thus, an expression control sequence can include promoters, enhancers, internal ribosome entry sites (IRES), transcription terminators, a start codon in front of a protein-encoding gene, splicing signal for introns, and stop codons. The term "expression control sequence" is intended to include, at a minimum, a sequence whose presence are designed to influence expression, and can also include additional advantageous components. For example, leader sequences and fusion partner sequences are expression control sequences. The term can also include the design of the nucleic acid sequence such that undesirable, potential initiation codons in and out of frame, are removed from the sequence. It can also include the design of the nucleic acid sequence such that undesirable potential splice sites are removed. It includes sequences or polyadenylation sequences (pA) which direct the addition of a polyA tail, <i>i.e.,</i> a string of adenine residues at the 3'end of a mRNA, sequences referred to as polyA sequences. It also can be designed to enhance mRNA stability. Expression control sequences which affect the transcription and translation stability, <i>e.g.</i>, promoters, as well as sequences which effect the translation, <i>e.g.,</i> Kozak sequences, are known in insect cells. Expression control sequences can be of such nature as to modulate the nucleotide sequence to which it is operably linked such that lower expression levels or higher expression levels are achieved.</p>
<p id="p0024" num="0024">As used herein, the terms <b>"promoter"</b> or <b>"transcription regulatory sequence"</b> refer to a nucleic acid fragment that functions to control the transcription of one or more coding sequences, and is located upstream with respect to the direction of transcription of the transcription initiation site of the coding sequence, and is structurally identified by the presence of a binding site for DNA-dependent RNA polymerase, transcription initiation sites and any other DNA sequences, including, but not limited to, transcription factor binding sites, repressor and activator protein binding sites, and any other sequences of nucleotides known to one of skill in the art to act directly or indirectly to regulate the amount of transcription from the promoter. A <b>"constitutive"</b> promoter is a promoter that is active in most tissues under most physiological and developmental conditions. An<!-- EPO <DP n="8"> --> <b>"inducible"</b> promoter is a promoter that is physiologically or developmentally regulated, <i>e.g.,</i> by the application of a chemical inducer. A <b>"tissue-specific"</b> promoter is only active in specific types of tissues or cells.</p>
<p id="p0025" num="0025">The terms <b>"substantially identical", "substantial identity", "% identity"</b> or <b>"essentially similar"</b> or <b>"essential similarity"</b> mean that two peptide or two nucleotide sequences, when optimally aligned, such as by the programs GAP or BESTFIT using default parameters, share at least a certain percentage of sequence identity as defined elsewhere herein. GAP uses the Needleman and Wunsch global alignment algorithm to align two sequences over their entire length, maximizing the number of matches and minimizes the number of gaps. Generally, the GAP default parameters are used, with a gap creation penalty = 50 (nucleotides) / 8 (proteins) and gap extension penalty = 3 (nucleotides) / 2 (proteins). For nucleotides, the default scoring matrix used is nwsgapdna and for proteins the default scoring matrix is Blosum62 (<nplcit id="ncit0007" npl-type="s"><text>Henikoff &amp; Henikoff, 1992. Proc Natl Acad Sci U S A. 89(22):915-919</text></nplcit>). It is clear than when RNA sequences are said to be essentially similar or have a certain degree of sequence identity with DNA sequences, thymine (T) in the DNA sequence is considered equal to uracil (U) in the RNA sequence. Sequence alignments and scores for percentage sequence identity may be determined using computer programs, such as the GCG Wisconsin Package, Version 10.3, available from Accelrys Inc., 9685 Scranton Road, San Diego, CA 92121-3752, USA or the open-source software Emboss for Windows (current version 2.7.1-07). Alternatively, percent similarity or identity may be determined by searching against databases such as FASTA, BLAST, etc.</p>
<p id="p0026" num="0026">As used herein, the term <b>"nucleic acid construct"</b> is intended to mean a nucleic acid molecule (typically comprised of DNA) operably linked to expression control elements, such as, for example, a promoter that is capable of expression of the nucleic acid molecule.</p>
<p id="p0027" num="0027">As used herein, the term <b>"gene therapy vector"</b> is generally intended to mean a nucleic acid molecule (typically comprised of DNA) capable of replication in a host cell and/or to which another nucleic acid segment can be operatively linked so as to bring about replication of the attached segment. A virus is a gene therapy vector. As used herein, the<!-- EPO <DP n="9"> --> term <b>"vector"</b> refers to a genetic construct that is composed of genetic material (<i>i.e.</i>, nucleic acids). Vectors may include one or more genetic elements as described herein arranged such that an inserted coding sequence can be transcribed and translated in a suitable expression cell. In addition, the vector may include one or more nucleic acid segments, genes, promoters, enhancers, activators, multiple cloning regions, or any combination thereof, including segments that are obtained from or derived from one or more natural and/or artificial sources. A gene therapy vector disclosed herein may be comprised within an infectious viral particle. The terms <b>"viral particle"</b> and <b>"virion"</b> are used interchangeably herein. Thus, the present invention also encompasses virions, as well as host cells that comprise a nucleic acid construct or a gene therapy vector of the invention.</p>
<p id="p0028" num="0028">As used herein, the terms <b>"protein", "polypeptide",</b> and <b>"peptide"</b> are used interchangeably, and include molecules that include at least one amide bond linking two or more amino acid residues together. Although used interchangeably, in general, a peptide is a relatively short (<i>e.g</i>., from 2 to about 100 amino acid residues in length) molecule, while a protein or a polypeptide is a relatively longer polymer (<i>e.g</i>., 100 or more residues in length). However, unless specifically defined by a chain length, the terms peptide, polypeptide, and protein are used interchangeably.</p>
<p id="p0029" num="0029">As used herein, the term <b>"subject"</b> (also interchangeably referred to as <b>"patient"</b>) refers to any subject that can serve as a recipient for a gene therapy vector, a pharmaceutical composition, or a virion of the present invention. In one embodiment, the subject is a human being). In certain embodiments, a <b>"patient"</b> refers to any animal host, including, but not limited to, human and non-human primates, bovines, canines, caprines, cavines, corvines, epines, equines, felines, hircines, lapines, leporines, lupines, murines, ovines, porcines, racines, vulpines, and the like, including, without limitation, domesticated livestock, herding or migratory animals, exotics or zoological specimens, as well as companion animals, pets, and any animal under the care of a veterinary practitioner.</p>
<p id="p0030" num="0030">As used herein, <b>"an effective amount"</b> would be understood by those of ordinary skill in the art to provide a therapeutic, prophylactic, or otherwise beneficial effect to a recipient subject.<!-- EPO <DP n="10"> --></p>
<p id="p0031" num="0031">The term <b>"isolated"</b> refers to material that is substantially, or essentially, free from components that normally accompany the material as it is found in its native state. Thus, isolated polynucleotides in accordance with the invention preferably do not contain materials normally associated with those polynucleotides in their natural, or <i>in situ,</i> environment.</p>
<heading id="h0006"><b><u>Detailed description of the invention</u></b></heading>
<p id="p0032" num="0032">The present invention relates to the treatment of a retinal disorder or a disorder associated with cellular changes in the retina, in particular changes due to one or more mutations in CRB1. More specifically, the present invention relates to the treatment of Leber's congenital amaurosis (LCA), in particular Leber's congenital amaurosis-8 (LCA8), and to the treatment of progressive retinitis pigmentosa (RP), in particular progressive retinitis pigmentosa 12 (RP12), or alternatively said early onset RP12. The invention provides a method for at least in part decreasing loss of retinal activity and structural integrity in an animal, wherein the loss of retinal activity and structural integrity comprising at least in part loss of Crumbs homologue (CRB) function in said animal. Said decreasing of loss of retinal activity and structural integrity is accomplished via a recombinant adenoassociated viral (rAAV) expression vector expressing a first nucleic acid segment encoding a first therapeutic gene product that express a biologically-functional Crumbs homologue (CRB) peptide, polypeptide, or protein for use in one or more investigative, diagnostic and/or therapeutic regimens, including for example, the treatment of one or more disorders or diseases of the mammalian eye, and in particular, for treating congenital retinal blindness including, retinal dystrophy such as Leber's congenital amaurosis type 8 (LCA8) and retinitis pigmentosa (RP) due to lack of sufficient biological Crumbs homologue (CRB) function, in humans. It is preferred that the treatment is not or almost not toxic.</p>
<p id="p0033" num="0033">In a first aspect, the present invention relates to a gene therapy vector for use in treatment or prophylaxis of a retinal disorder due to mutations in <i>CRB1</i> gene in a human subject, wherein the gene therapy vector comprises a nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein.<!-- EPO <DP n="11"> --></p>
<p id="p0034" num="0034">The full length <i>CRB1</i> (for example, SEQ ID NOs: 1-2) cannot usually be used in adenoassociated virus because of its size, although recently it has been shown that it is possible to express full length CRB 1 using AAV9 when using a small promoter, such as a truncated CMV (minimal CMV; preferably SEQ ID NO: 133) or hGRK1 promoter (<nplcit id="ncit0008" npl-type="s"><text>Pellissier et al., 2014. Mol Ther Methods Clin Dev. 1:14009</text></nplcit>). The size of normal full length CRB 1 cDNA is about 4.22 kb. A vector comprising this sequence and also comprising other expression elements such as a CMV promoter, inverted terminal repeats and 5' untranslated region would approximately be 5.2 kb. Since the normal genome of the preferred vector of this invention, AAV, is 4.7 kb, the recombinant genomes that are larger than 4.9 kb are not packaged correctly in the capsid, thereby often resulting in defective viruses. As a consequence, it was considered that also the shortened version of CRB1 may be useful in gene therapy, since the short variant occurs in several species and with respect to its protein structure resembles CRB2. However, the Inventors found unexpectedly that both the naturally occurring short variant of CRB 1 (lacking EGF domains as compared to full-length CRB 1; short CRB 1 or sCRB 1 is shown in SEQ ID NO: 3) and also CRB3A (SEQ ID NO: 84) were toxic (tested in AAV5 and AAV9 capsid, see Example 1 as presented herein, wherein it is shown that expression of short human CRB1 in immune naive CRB1 knockout retina is toxic). Therefore, it was preferred that the gene therapy vector of the present invention does not comprise a nucleotide sequence encoding naturally-occurring CRB 1 and/or CRB3 protein and does not comprise a nucleotide sequence encoding a naturally occurring short variant of CRB 1 (lacking EGF domains as compared to full-length CRB 1). Examples of these sequences are provided in the sequence listing (<i>e.g</i>., SEQ ID NO: 1-39 and 64 for CRB 1 and SEQ ID NO: 84-120 for CRB3). Even more surprisingly, the Inventors found that CRB2 did not result in a significant toxic effect as seen with the naturally occurring short variant of CRB 1 and with CRB3.</p>
<p id="p0035" num="0035">The Inventors' analysis of mice lacking CRB1, mice lacking CRB2, mice lacking CRB 1 with reduced levels of CRB2, mice lacking CRB2 with reduced levels of CRB 1, and mice lacking both CRB 1 and CRB2 suggest very similar functions for CRB 1 and CRB2. Similarly, the functions of Crumbs homologue (CRB) proteins are exchangeable <i>e.g.,</i> the human CRB1 protein can rescue partially the phenotype in fruit flies lacking Crumbs<!-- EPO <DP n="12"> --> (Crb) protein (<nplcit id="ncit0009" npl-type="s"><text>den Hollander et al., 2001. Hum Mol Genet. 10(24):2767-73</text></nplcit>), and the zebrafish CRB2B protein can rescue the phenotype in zebrafish lacking CRB2A protein (<nplcit id="ncit0010" npl-type="s"><text>Omori &amp; Malicki, 2006. Curr Biol. 16(10):945-57</text></nplcit>). Other advantages of endogenously or exogenously increasing levels of human CRB2 protein are the following:
<ol id="ol0001" compact="compact" ol-style="">
<li>A) human CRB2 cDNA is small, about 3.9 kb, resulting in an expression cassette comprising the CRB2 cDNA and expression elements of typically only about 4.9 kb. It was found that expression of human CRB2 using a parvoviral vector can be obtained in the retina.</li>
<li>B) Native CRB2 is present in the retina of mice both in photoreceptor cells and in Müller glia cells, and possibly also in retinal pigment epithelial cells. Also, in other species, native CRB2 is present and functional in photoreceptor cells. However, in humans, native CRB2 only is present in Müller glia cells, more specifically at the subapical region adjacent to adherens junctions at the outer limiting membrane in Müller glia cells, but not in photoreceptor cells. It is acknowledged that the situation between mice and man differs <b>(</b><figref idref="f0001"><b>Figs. 1</b></figref> <b>and</b> <figref idref="f0002"><b>2</b></figref><b>).</b> Several mouse models have been developed and experiments were performed in several mouse models. In the Examples presented herein, it has been illustrated that conditional knockout mice have been developed that have a similar phenotype as presented in humans suffering from RP12.</li>
<li>C) The immune system in humans who are deficient in CRB 1 may recognize recombinant CRB 1 as a non-self protein and possibly an immuno reaction against the recombinant CRB 1 is incurred. CRB2 is recognized as a self protein since it is already expressed and immune-tolerated in the retinas and epithelia of other organs of these patients and will not result in an immune response.</li>
</ol></p>
<p id="p0036" num="0036">The cause of the toxicity of full length and short CRB1 as referred to above is yet unknown and may be on the level of DNA, RNA or protein. Without wishing to be bound by any theory, it is for example possible that overexpression of short CRB1 protein scavenges essential proteins or that the RNA transcript of short CRB1 cDNA results in a disbalance in microRNAs.<!-- EPO <DP n="13"> --></p>
<p id="p0037" num="0037">Toxicity of CRB proteins was tested using human-derived retinal pigment epithelial cells as indicated in Example 3, or using electroretinography on mouse retinas as indicated in Example 6 presented herein.</p>
<p id="p0038" num="0038">In one embodiment, mutations in the <i>CRB1</i> gene result in loss of CRB 1 functional protein, as can be determined using electroretinography (ERG), multi-focal ERG, optical coherence tomography (OCT), microperimetry, visual evoked potention (VEP) test, functional magnetic resonance imaging test, or behaviour maze-test (see, for example: <nplcit id="ncit0011" npl-type="s"><text>Bainbridge et al., 2008. N Engl J Med. 358(21):2231-9</text></nplcit>; <nplcit id="ncit0012" npl-type="s"><text>Annear et al., 2011. Gene Ther. 18(1):53-61</text></nplcit>; <nplcit id="ncit0013" npl-type="s"><text>Maguire et al., 2008. N Engl J Med. 358(21):2240-8</text></nplcit>; <nplcit id="ncit0014" npl-type="s"><text>Testa et al., 2013. Ophthalmology. 120(6):1283-91</text></nplcit>; <nplcit id="ncit0015" npl-type="s"><text>Cideciyan et al., 2008. Proc Natl Acad Sci USA. 105(39):15112-7</text></nplcit>; <nplcit id="ncit0016" npl-type="s"><text>Watkins et al., 2012. Brain. 135(Pt 5):1566-77</text></nplcit>). These methods provide a quantifiable way to measure the regression or progression of retinal visual function in the examined eye. Preferably, the retinal disorder is Leber's congenital amaurosis or retinitis pigmentosa, more preferably LCA8 or RP12.</p>
<p id="p0039" num="0039">Retinitis pigmentosa (RP) is an autosomal recessive or dominant group of diseases that represent progressive or late severe forms of inherited retinal dystrophies affecting initially rod photoreceptors and subsequently cone photoreceptors. The twelveth gene, located on the long (q) arm of chromosome 1 between positions 31 and 32.1, implicated in the onset of this genetically and clinically heterogeneous, and therefore assigned to the RP12 gene locus (<nplcit id="ncit0017" npl-type="s"><text>van Soest et al., 1994. Genomics. 22(3):499-504</text></nplcit>), was Crumbs homologue-1 (CRB1) ( <nplcit id="ncit0018" npl-type="s"><text>den Hollander et al., 1999. Nat Genet. 23(2):217-21</text></nplcit>). The RP12 gene caused RP with preserved para-arteriolar retinal pigment epithelium (PPRPE) (<nplcit id="ncit0019" npl-type="s"><text>Heckenlively et al., 1982. Br J Ophthalmol. 66(1):26-30</text></nplcit>). Some genes that cause retinitis pigmentosa also cause Leber congenital amaurosis. The <i>CRB1</i> gene was also implicated in Leber congenital amaurosis (LCA) type 8 (LCA8) and progressive types of RP without PPRPE (<nplcit id="ncit0020" npl-type="s"><text>den Hollander et al., 2004. Hum Mutat. 24(5):355-69</text></nplcit>). LCA is an autosomal recessive or dominant group of diseases that represent the earliest and most severe form of all inherited retinal dystrophies. The RP12 or LCA8 gene encodes for Crumbs homologue-1 (CRB1) which is expressed predominantly in photoreceptors and Müller glia cells at a subapical region adjacent to adherens junctions at the outer limiting<!-- EPO <DP n="14"> --> membrane in the retina. CRB 1 plays a role in the formation and maintenance of adhesion between photoreceptors and Müller glia cells. Without CRB 1 protein, adhesion between these cells is weakened, leading to loss of normal retinal lamination. Without CRB1 protein, the subapical CRB 1/PALS 1/MUPP1 and CRB 1/PALS 1/PATJ protein complexes, required for maintaining cellular polarization and maintenance of adhesion between photoreceptors and Müller glia cells, are destabilized. Mutations in the <i>CRB1</i> gene reduce or abolish the ability of CRB 1 protein to maintain the subapical CRB 1/PALS 1/MUPP1 and CRB 1/PALS 1/PATJ protein complexes and to maintain the adhesion between photoreceptors and Müller glia cells, as in RP with mutations in the <i>CRB1</i> gene or LCA8. It is unclear why some people with <i>CRB1</i> gene mutations have severe, early visual impairment associated with Leber congenital amaurosis, and other people experience more gradual vision loss and other eye problems associated with retinitis pigmentosa. Other genetic factors (such as CRB2; <nplcit id="ncit0021" npl-type="s"><text>Alves et al., 2013. Hum Mol Genet. 22(1):35-50</text></nplcit>) may modify the effects of <i>CRB1</i> gene mutations to influence the severity of these conditions.</p>
<p id="p0040" num="0040">The first report of LCA was published in 1869 by <nplcit id="ncit0022" npl-type="s"><text>Theodor Leber (Leber, 1869. Albrecht von Graefes Arch Ophthal. 15:1-25</text></nplcit>). Currently, at least twenty genes have been reported to cause LCA. Mutations in <i>CRB1</i> account for -15% of all cases of LCA making it one of the leading causes of LCA. Diagnosis of LCA8 is typically made within the first few months of life in an infant with severely impaired vision or total blindness, a flat electroretinogram (ERG) and involuntary eye movements (nystagmus) (<nplcit id="ncit0023" npl-type="s"><text>Hufnagel et al., 2013. Graefes Arch Clin Exp Ophthalmol. 250(8):1117-28</text></nplcit>). Loss of normal retinal structure in LCA8 is unlike other forms of the disease which exhibit marked retinal thinning that generally worsens with age (<nplcit id="ncit0024" npl-type="s"><text>Pasadhika et al., 2010. Invest Ophthalmol Vis Sci. 51(5):2608-14</text></nplcit>) or exhibit preserved retinal structure with loss of retinal activity as is the case for LCA1 due to mutations in the <i>Gucy2d</i> gene. Using spectral-domain optical coherence tomography (SDOCT) to scan the central macular and perifoveal areas, a study revealed that LCA8 patients typically show a thicker retina with loss of the 6 retinal layers and immature appearance, compared to people without eye-disease or patients with other types of LCA such as LCA2 (<nplcit id="ncit0025" npl-type="s"><text>Jacobson et al., 2003. Hum Mol Genet. 12(9):1073-8</text></nplcit>).<!-- EPO <DP n="15"> --></p>
<p id="p0041" num="0041">Less severe retinal degeneration is observed in visually-impaired patients lacking a functional <i>CRB1</i> gene due to retinitis pigmentosa. Retinitis pigmentosa is the leading cause of inherited retinal degeneration-associated blindness. Retinitis pigmentosa (RP) is a disease condition that was first identified and named by Dr. Donders in 1857. Retinitis pigmentosa is a group of related conditions that are inherited, progressive and clinically distinctive and share a similar feature of dystrophy or damage to the photoreceptors of the retina and of the pigment epithelium underneath the photoreceptors. Currently, at least 50 genes have been reported to cause dominant or recessive RP. Around 30-40% are autosomal dominant, 50-60% are autosomal recessive and 5-15% are X-chromosome linked. The prevalence is 1 in 4 000 among all age groups and 1 in 3 000 persons in population younger than 65 years of age. Mutations in <i>CRB1</i> account for -3-5% of all cases of RP, making it one of the leading causes of RP. The number of patients affected by recessive mutations in the <i>CRB1</i> gene (RP and LCA) is approximately double that affected by mutations in the <i>RPE65</i> gene (LCA type 2 or LCA2), for which successful AAV-mediated gene therapy trials have been described. Diagnosis of RP patients is typically made within the first decades of life with initial vision problems especially in dim light. This manifests as a loss of vision around the peripheries, known as tunnel vision. The central vision is spared until the later stages of the disease. RP12 patients typically show preserved para-arteriole retinal pigment epithelium (PPRPE) (<nplcit id="ncit0026" npl-type="s"><text>Heckenlively, 1982. Br J Ophthalmol. 66(1):26-30</text></nplcit>). The preservation of retinal structure in patients with RP compared to patients with LCA8 due to mutations in the <i>CRB1</i> gene does suggest that they are better suited for future therapeutic strategies, but timely expression of the <i>CRB1</i> gene in LCA8 patients will rescue the structure and function of LCA8 retinas as well.</p>
<p id="p0042" num="0042">Loss of CRB1 function in humans leads to progressive RP12 or LCA8, though loss of CRB 1 function in mice leads to relative mild retinal disorganization and degeneration. It is unclear why some people with <i>CRB1</i> gene mutations have severe, early visual impairment associated with Leber congenital amaurosis, and other people experience more gradual but progressive early onset vision loss and other eye problems associated with retinitis pigmentosa. It is also unclear why mice lacking CRB 1 show a relative mild phenotype compared to humans lacking CRB1. Other genetic factors (such as CRB2;<!-- EPO <DP n="16"> --> <nplcit id="ncit0027" npl-type="s"><text>Alves et al., 2013. Hum Mol Genet. 22(1):35-50</text></nplcit>) may modify the effects of <i>Crb1</i> gene mutations to influence the severity of these conditions. Indeed, mice lacking CRB2 in the retina show a phenotype mimicking progressive RP detected in human patients lacking CRB1 (<nplcit id="ncit0028" npl-type="s"><text>Alves et al., 2013. Hum Mol Genet. 22(1):35-50</text></nplcit>), and mice lacking CRB2 and CRB1 mimic LCA8 detected in human patients lacking CRB1 (<nplcit id="ncit0029" npl-type="s"><text>Pellissier et al., 2013. PLoS Genet. 9(12):e1003976</text></nplcit>). Other factors involved are light exposure; exposure to moderate levels of white light significantly increased the level of retinal disorganization and degeneration in mice lacking CRB1 (<nplcit id="ncit0030" npl-type="s"><text>van de Pavert et al., 2004. J Cell Sci. 117(Pt 18):4169-77</text></nplcit>; <nplcit id="ncit0031" npl-type="s"><text>van de Pavert et al., 2007. J Neurosci. 27(3):564-73</text></nplcit>; <nplcit id="ncit0032" npl-type="s"><text>van de Pavert et al., 2007. Glia. 55(14): 1486-97</text></nplcit>).</p>
<p id="p0043" num="0043">In part, the phenotypes in mice and humans may differ because of different localization of CRB1 and CRB2 proteins. In the mouse retina, immuno electron microscopy showed that CRB1 localizes in the apical villi of Müller glia cells at the subapical region (SAR) adjacent to adherens junctions (AJ) at the outer limiting membrane (OLM). In the mouse retina, CRB2 localizes at two regions: the inner segments of photoreceptors at the subapical region (SAR) adjacent to adherens junctions (AJs) at the outer limiting membrane (OLM), as well as at the apical villi of Müller glia cells at the subapical region (SAR) adjacent to adherens junctions (AJs) at the outer limiting membrane (OLM) (<nplcit id="ncit0033" npl-type="s"><text>van Possum et al., 2006. Hum Mol Genet. 15(18):2659-72</text></nplcit>). Loss of CRB 1 in the mouse retina therefore leaves functional CRB2 protein in photoreceptors and Müller glia cells, resulting in a mild phenotype.</p>
<p id="p0044" num="0044">In the human retina, immuno electron microscopy showed that CRB2 localizes in the apical villi of Müller glia cells at the subapical region (SAR) adjacent to adherens junctions (AJ) at the outer limiting membrane (OLM). In the human retina, CRB 1 localizes at two regions: the inner segments of photoreceptors at the subapical region (SAR) adjacent to adherens junctions (AJs) at the outer limiting membrane (OLM), as well as at the apical villi of Müller glia cells at the subapical region (SAR) adjacent to adherens junctions (AJs) at the outer limiting membrane (OLM) (<nplcit id="ncit0034" npl-type="s"><text>Pellissier et al., 2014. Hum Mol Genet. 23(14):3759-71</text></nplcit>). Loss of CRB1 in the human retina therefore leaves<!-- EPO <DP n="17"> --> functional CRB2 protein at the SAR in Müller glia cells but not in photoreceptors, resulting in a severe phenotype.</p>
<p id="p0045" num="0045">Three mouse models carrying mutations in the <i>Crb1</i> gene have been described. Homozygote mice with the naturally occurring rd8 mutation in the <i>Crb1</i> gene <i>(Crb1</i><sup><i>rd8</i>/</sup><i><sup>rd8</sup>)</i> show mild retinal degeneration, preferentially in one quadrant of the retina, the inferior (ventral) nasal quadrant (<nplcit id="ncit0035" npl-type="s"><text>Aleman et al., 2011. Invest Ophthalmol Vis Sci. 52(9):6898-910</text></nplcit>; <nplcit id="ncit0036" npl-type="s"><text>Mehalow et al., 2003. Hum Mol Genet. 12(17):2179-89</text></nplcit>). Homozygote knock-out mice lacking any CRB 1 protein <i>(Crb1<sup>-l-</sup>)</i> show mild retinal degeneration, preferentially in one quadrant of the retina, the inferior (ventral) temporal quadrant (<nplcit id="ncit0037" npl-type="s"><text>van de Pavert et al., 2004. J Cell Sci. 117(Pt 18):4169-77</text></nplcit>; <nplcit id="ncit0038" npl-type="s"><text>van de Pavert et al., 2007. J Neurosci. 27(3):564-73</text></nplcit>). Heterozygote knock-in/heterozygote knock-out mice expressing no wild-type mouse CRB1 but expressing CRB1 with a substitution at position 249 of amino-acid tryptophane (W) for a cystein (C) (<i>Crb1</i><sup><i>C249W</i>/<i>-</i></sup>) show very late-stage mild retinal degeneration (<nplcit id="ncit0039" npl-type="s"><text>van de Pavert et al., 2007. Glia. 55(14):1486-97</text></nplcit>). <i>Crb1</i><sup><i>C249W</i>/</sup> mice were developed as a mouse model for RP12 patients with a C250W substitution in both alleles.</p>
<p id="p0046" num="0046">Importantly, in none of the 3 mouse models (<i>Crb1</i><sup><i>rd8</i>/</sup><i><sup>rd8</sup>, Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>,</i> or <i>Crb1</i><sup><i>C249W</i>/<i>-</i></sup>) was there a significant decrease in retinal function as measured by electroretinography (<nplcit id="ncit0040" npl-type="s"><text>Aleman et al., 2011. Invest Ophthalmol Vis Sci. 52(9):6898-910</text></nplcit>; <nplcit id="ncit0041" npl-type="s"><text>Mehalow et al., 2003. Hum Mol Genet. 12(17):2179-89</text></nplcit>; <nplcit id="ncit0042" npl-type="s"><text>van de Pavert et al., 2004. J Cell Sci. 117(Pt 18):4169-77</text></nplcit>; <nplcit id="ncit0043" npl-type="s"><text>van de Pavert et al., 2007. J Neurosci. 27(3):564-73</text></nplcit>; <nplcit id="ncit0044" npl-type="s"><text>van de Pavert et al., 2007. Glia. 55(14):1486-97</text></nplcit>). Therefore, these mice appeared not suitable for testing efficacy of CRB gene therapy vectors as measured by electroretinography.</p>
<p id="p0047" num="0047">Several other newly developed mouse models are useful for evaluating gene replacement therapy. First, the <i>Crb2</i> conditional knock-out mouse (<i>Crb2</i> cKO) lacking CRB2 in all retinal cells except the retinal pigment epithelium (<i>e.g.,</i> the <i>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>Chx10Cre</i>) (<nplcit id="ncit0045" npl-type="s"><text>Alves et al., 2013. Hum Mol Genet. 22(1):35-50</text></nplcit>). Second, the <i>Crb2</i> conditional knock-out mouse lacking CRB2 in photoreceptors (<i>e.g.,</i> the <i>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>CrxCre</i>) (<nplcit id="ncit0046" npl-type="s"><text>Alves et al., 2014. Hum Mol Genet. 23(13):3384-401</text></nplcit>). Third, the <i>Crb2</i> conditional knock-out mouse lacking CRB2 in Müller glia cells (<i>e.g., Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>PdgfrαCre</i>) (<nplcit id="ncit0047" npl-type="s"><text>Alves et al., 2014. Hum Mol Genet. 23(13):3384-401</text></nplcit>). Fourth, the homozygote Crbl/heterozygote <i>Crb2</i> conditional<!-- EPO <DP n="18"> --> knock-out mouse lacking CRB 1 in all retinal cells and having reduced expression of CRB2 in all retinal cells except the retinal pigment epithelium (<i>e.g., Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup> Crb2</i><sup><i>flox</i>/</sup><i><sup>+</sup>Chx10Cre</i>) (<nplcit id="ncit0048" npl-type="s"><text>Pellissier et al., 2014. Hum Mol Genet. 23(14):3759-71</text></nplcit>). Fifth, the homozygote <i>Crbl</i>/<i>heterozygote Crb2</i> conditional knock-out mouse lacking CRB 1 in all retinal cells and having reduced expression of CRB2 in photoreceptors (<i>e.g., Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup> Crb2</i><sup><i>flox</i>/</sup><i><sup>+</sup>CrxCre</i>)<i>.</i> Sixth, the homozygote <i>Crb1</i>/<i>heterozygote Crb2</i> conditional knock-out mouse lacking CRB 1 in all retinal cells and having reduced expression of CRB2 in Müller glia cells (<i>e.g., Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/</sup><i><sup>+</sup>PdgfraCre</i>). Seventh, the homozygote Crb1/homozygote <i>Crb2</i> conditional knock-out mouse lacking CRB 1 in all retinal cells and CRB2 in all retinal cells except the retinal pigment epithelium (<i>e.g., Crb1<sup>-l-</sup>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>Chx10Cre</i>) (<nplcit id="ncit0049" npl-type="s"><text>Pellissier et al., 2013. PLoS Genet. 9(12):e1003976</text></nplcit>). Eighth, the homozygote <i>Crbl</i>/<i>homozygote Crb2</i> conditional knock-out mouse lacking CRB1 in all retinal cells and CRB2 in photoreceptors (<i>e.g., Crbl</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>Crx10Cre</i>). Ninth, the homozygote <i>Crbl</i>/<i>homozygote Crb2</i> conditional knock-out mouse lacking CRB1 in all retinal cells and CRB2 in Müller glia cells (<i>e.g., Crbl</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>PdgfrαCre</i>).</p>
<p id="p0048" num="0048">The <i>Crb2</i> conditional knock-out mouse lacking CRB2 in all retinal cells except the retinal pigment epithelium (<i>e.g.,</i> the <i>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>Chx10Cre</i>) (<nplcit id="ncit0050" npl-type="s"><text>Alves et al., 2013. Hum Mol Genet. 22(1):35-50</text></nplcit>) was used to evaluate gene replacement therapy. The <i>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>Chx10Cre</i> exhibits progressive retinal degeneration and scotopic (rod-mediated) and photopic (cone-mediated) loss of retina function as measured by ERG from 1 to 6 months of age (<nplcit id="ncit0051" npl-type="s"><text>Alves et al., 2013. Hum Mol Genet. 22(1):35-50</text></nplcit>). The mouse is blind at 12-18 months of age. AAV-mediated transfer of CRB2 to <i>Crb2</i> cKO retina restored vision to these animals as evidenced by ERG. AAV-mediated transfer of CRB2 to the postnatal <i>Crb2</i> cKO retina expressed CRB2 in photoreceptors and Müller glia cells and caused preservation of retinal structure at the time of expression of CRB2. These experiments showed the feasibility of preserving retinal structure after a single dose of AAV-CRB2 even in severely degenerating <i>Crb2</i> cKO retinas.</p>
<p id="p0049" num="0049">For testing efficacy of a gene therapy vector of the invention in human patients, several standard as well as state of the art techniques are available, such as electroretinography, pupillometry, scanning laser ophthalmoscopy, optical coherence tomography, and<!-- EPO <DP n="19"> --> behavior tests. Especially, the use of functional magnetic resonance imaging (fMRI), as biomarker for early improvements in cortical visual function upon treatment of the retina with the AAV-CRB gene therapy vector, will be most useful for analyzing and interpreting different dosing regimes.</p>
<p id="p0050" num="0050">In one embodiment, a gene therapy vector of the present invention may be used in a combination therapy, for example in combination with:
<ol id="ol0002" compact="compact" ol-style="">
<li>a) addition of protective, nurturing or growth factors such as <i>e.g.,</i> GDNF or CTNF,</li>
<li>b) addition of drugs that normalize the intraocular pressure in eyes such as <i>e.g.,</i> eye drops containing prostaglandin analogs, beta blockers, alpha agonists, and/or carbonic anhydrase inhibitors,</li>
<li>c) addition of drugs or tools that decrease the light-sensitivity of eyes such as <i>e.g.,</i> prosthetic contact lenses,</li>
<li>d) addition of drugs that normalize the retinoid cyclus in the retina such as <i>e.g.,</i> retinoids,</li>
<li>e) addition of drugs that increase the strength of adherens junctions at the retinal outer limiting membrane such as <i>e.g.</i>, magnesium and calcium salts.</li>
</ol></p>
<p id="p0051" num="0051">In one embodiment, the gene therapy vector of the present invention may be applied only once to a subject suffering from the retinal disorder due to mutations in <i>CRB1</i> gene. Re-application of the same or a similar vector, for example with the same or another capsid, is expected to become advantageous with signs of decreased vision in the dark. The same or a similar vector may be re-applied, because injection of the AAV vector subretinally provokes low immune response. In contrast, intravitreal injection has been demonstrated to result in an immune response, but in such cases, another suitable vector may be used (<nplcit id="ncit0052" npl-type="s"><text>Li et al., 2008. Mol Vis. 14:1780-1789</text></nplcit>). It is envisioned that maze experiments, but preferentially fMRI experiments with visual tasks in dimmed light, by testing the visual cortex, will be most instrumental in determining the time point at which a re-application becomes advantageous.</p>
<p id="p0052" num="0052">According to the present invention, the subject suffering from the retinal disorder due to mutations in <i>CRB1</i> gene and to be treated using a gene therapy vector, an AAV vector, a<!-- EPO <DP n="20"> --> virion, a host cell or a pharmaceutically composition according to the present invention is a human.</p>
<p id="p0053" num="0053">In one embodiment, the CRB2 protein is a eumetazoan CRB2 protein, preferably a CRB2 protein of human, non-human primate, murine, feline, canine, porcine, ovine, bovine, equine, caprine, or lupine origin, more preferably the CRB2 protein is a human CRB2 protein.</p>
<p id="p0054" num="0054">In one embodiment, the gene therapy vector is a recombinant parvoviral vector or a lentiviral vector.</p>
<p id="p0055" num="0055">Viruses of the <i>Parvoviridae</i> family are small DNA animal viruses. The <i>Parvoviridae</i> family may be divided between two subfamilies: the <i>Parvovirinae,</i> which infect vertebrates, and the <i>Densovirinae,</i> which infect insects. Members of the <i>Parvovirinae</i> subfamily are herein referred to as the parvoviruses and include the genus <i>Dependovirus.</i> As may be deduced from the name of their genus, members of the <i>Dependovirus</i> genus are unique in that they usually require coinfection with a helper virus, such as adenovirus or herpes virus, for productive infection in cell culture.</p>
<p id="p0056" num="0056">The <i>Dependovirus</i> genus includes adeno-associated virus (AAV), which normally infects humans (<i>e.g</i>., serotypes 1, 2, 3A, 3B, 4, 5, and 6) or primates (<i>e.g.</i>, serotypes 1 and 4), and related viruses that infect other warm-blooded animals (<i>e.g</i>., bovine, canine, equine, and ovine adeno-associated viruses). Today, it is possible to differentiate between the serologically distinguishable types of at least AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8 and AAV9. AAV vectors constitute a single-stranded DNA with an outer icosahedral coat of structural protein having a diameter of 18 to 26 nm, typically about 25 nm. Further information on parvoviruses and other members of the <i>Parvoviridae</i> family is described in <nplcit id="ncit0053" npl-type="b"><text>Kenneth (1996). "Parvoviridae: the viruses and their replication". In Fields &amp; Knipe, Fields' virology (3rd ed.) New York, NY: Raven Press</text></nplcit>. For convenience, the present invention is further exemplified and described herein by reference to AAV. It is however understood that the invention is not limited to AAV but may equally be applied to other parvoviruses. It is also understood that the invention extends to AAV chimeric viruses, comprising chimeric capsid proteins and/or AAV<!-- EPO <DP n="21"> --> hybrid viruses (or pseudotyped viruses) that also have a similar size as found for the wild-type parvoviruses (18-26 nm diameter). A description and some examples are given in <patcit id="pcit0005" dnum="WO2000028004A"><text>WO 2000/028004</text></patcit>. Examples of AAV chimeric and/or hybrid viruses are, for example, AAV2/1, AAV2/3, AAV2/4, AAV2/5, AAV2/5.2, AAV2/6, AAV2/7, AAV2/8 and AAV2/9.</p>
<p id="p0057" num="0057">The AAV genome consists of <i>rep</i> genes encoding proteins required for replication of the virus and <i>cap</i> genes encoding the viral structural proteins. One or more of the <i>rep</i> genes which are required for replication (<i>e.g., rep40, rep52, rep68</i> and/or <i>rep78</i>) or the <i>cap</i> genes which are required for the capsid structure (<i>e.g</i>., VP-1, VP-2 and/or VP-3) can, for example, be replaced in the virus with a transgene when preparing adeno-associated vectors. The ITR regions which are still present at the 5' and 3' ends are needed, as <i>cis</i>active elements, for packaging the transgene into infectious, recombinant AAV particles and for the replication of the DNA of the recombinant AAV genome (<nplcit id="ncit0054" npl-type="s"><text>Kotin, 1994. Hum Gene Ther. 5(7):793-801</text></nplcit>). A "recombinant parvoviral or AAV vector" (or "rAAV vector") herein refers to a vector comprising one or more polynucleotide sequences of interest, genes of interest or "transgenes" that are flanked by parvoviral or AAV inverted terminal repeat sequences (ITRs). Such rAAV vectors can be replicated and packaged into infectious viral particles when present in an insect or mammalian host cell that is expressing AAV <i>rep</i> and <i>cap</i> gene products (<i>i.e.,</i> AAV Rep and Cap proteins). When an rAAV vector is incorporated into a larger nucleic acid construct (<i>e.g</i>., in a chromosome or in another vector, such as, a plasmid or baculovirus used for cloning or transfection), then the rAAV vector is typically referred to as a "pro-vector" which can be "rescued" by replication and encapsidation in the presence of AAV packaging functions and necessary helper functions.</p>
<p id="p0058" num="0058">Thus, in one embodiment, the gene therapy vector of the present invention is an rAAV vector. In one embodiment, the rAAV is selected from the group consisting of recombinant adeno-associated virus serotype 1 (rAAV1), recombinant adeno-associated virus serotype 2 (rAAV2), recombinant adeno-associated virus serotype 3 (rAAV3), recombinant adenoassociated virus serotype 4 (rAAV4), recombinant adeno-associated virus serotype 5 (rAAV5), recombinant adeno-associated virus serotype 6 (rAAV6),<!-- EPO <DP n="22"> --> recombinant adeno-associated virus serotype 7 (rAAV7), recombinant adeno-associated virus serotype 8 (rAAV8), recombinant adeno-associated virus serotype 9 (rAAV9), serotype variants, for example for enhanced transduction of Müller glia cells, such as rAAV6 ShH10 (<nplcit id="ncit0055" npl-type="s"><text>Klimczak et al., 2009. PLoS One. 4(10):e7467</text></nplcit>) and ShH10Y (<nplcit id="ncit0056" npl-type="s"><text>Dalkara et al., 2011. Mol Ther. 19(9):1602-8</text></nplcit>), and combinations thereof.</p>
<p id="p0059" num="0059">In one embodiment, the nucleotide sequence encodes for a CRB2 protein comprising an amino acid sequence that has at least 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% preferably at least 100% sequence identity with the amino acid sequences of any one of SEQ ID NO: 40-63 or 65-83, more preferably any one of SEQ ID NO: 40-42, most preferably SEQ ID NO: 40.</p>
<p id="p0060" num="0060">Such a CRB2 protein preferably has an intracellular domain of 37 amino acid residues or alternatively an intracellular domain plus transmembrane domain of 63 amino acid residues. Without wishing to be bound by any theory, these domains in particular are considered most relevant for membrane localization and formation of the Crumbs homologue (CRB) protein complex linked to the actin cytoskeleton of the cell, which are believed to be important to rescue the phenotype and non-toxicity.</p>
<p id="p0061" num="0061">In one embodiment, the nucleotide sequence encodes for a CRB2 protein consisting of an amino acid sequence that has at least 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% preferably at least 100% sequence identity with the amino acid sequences of any one of SEQ ID NO: 40-63 or 65-83, more preferably any one of SEQ ID NO: 40-42, most preferably SEQ ID NO: 40.</p>
<p id="p0062" num="0062">In one embodiment, the nucleotide sequence encodes for a CRB2 protein comprising or consisting of an amino acid sequence as shown in any one of SEQ ID NO: 40-63 or 65-83, more preferably any one of SEQ ID NO: 40-42, most preferably SEQ ID NO: 40.</p>
<p id="p0063" num="0063">In one embodiment, the CRB2 protein comprises a contiguous amino acid sequence that is at least 95% identical to the carboxy (C)-terminal region of 37 contiguous amino acids of a sequence as set forth in SEQ ID NO: 40-63 or 65-83, more preferably any one of SEQ ID NO: 40-42, even more preferably SEQ ID NO: 40.<!-- EPO <DP n="23"> --></p>
<p id="p0064" num="0064">In one embodiment, a CRB2 protein comprising or consisting of an amino acid sequence as defined herein is a functional or, alternatively said, active CRB2 protein. To test whether a protein comprising or consisting of an amino acid sequence as defined herein is a functional CRB2 protein, electroretinography is performed.</p>
<p id="p0065" num="0065">In short, an AAV vector, preferably AAV2/9 or AAV2/5, wherein the capsid is AAV9 or AAV5 and the ITRs are AAV2, is generated to allow expression of the CRB2 protein comprising or consisting of an amino acid sequence as defined herein operably linked to a CMV promoter. A construct can be made according to the Examples as presented herein. The AAV vector is administered subretinally to the retina of <i>Crb2</i> cKO mice (<i>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>) on postnatal day 14. The contralateral eye receives a control AAV vector which comprises GFP instead of the CRB2 protein to be tested. A positive control animal receives a recombinant AAV expressing CRB2 protein according to SEQ ID NOs: 40, 41 or 42. At 3 months of age or later, <i>i.e.,</i> at least 2.5 months after application of the virus, a-wave and b-wave electroretinograms are made as described in <nplcit id="ncit0057" npl-type="s"><text>Tanimoto et al. (2013. Methods Mol Biol. 935:69-78</text></nplcit>). Briefly, retinas of anesthetized mice are exposed to light flashes at different intensities (on the x-axis the light intensity expressed as log (cd<sup>∗</sup>s/m<sup>2</sup>)). A CRB2 protein comprising or consisting of an amino acid sequence as defined herein is considered to have CRB2 activity (or to be a functional CRB2 protein) if the maximal b-wave and/or a-wave amplitude (in microvolts) in the electroretinogram is increased by at least 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9 or 2.0-fold as compared to the AAV-GFP treated contralateral retina. More preferably, the AAV vector is administered not on postnatal day 14, but on postnatal day 3 or 4, since this may significantly increase the efficacy of treatment.</p>
<p id="p0066" num="0066">In one embodiment, in the gene therapy vector according to the invention, the nucleotide sequence encoding CRB2 is operably linked to expression control elements comprising a promoter that produces sufficient expression of CRB2to obtain a therapeutic effect, wherein the promoter preferably is selected from the group consisting of: CMV promoter, preferably according to SEQ ID NO: 121, CMV promoter, truncated CMV or minimal CMV promoter, truncated human RLBP1 promoter, human photoreceptor specific rhodopsin kinase promoter and human rod photoreceptor specific rhodopsin promoter.<!-- EPO <DP n="24"> --></p>
<p id="p0067" num="0067">The nucleic acid sequence of an illustrative human Müller glia specific retinaldehyde binding protein-1 (RLBP1) promoter (<nplcit id="ncit0058" npl-type="s"><text>Pellissier et al., 2014. Mol Ther Methods Clin Dev. 1:14009</text></nplcit>; similar in part to the published mouse RLBP1 promoter described in <nplcit id="ncit0059" npl-type="s"><text>Vazquez-Chona et al., 2009. Invest Ophthalmol Vis Sci. 50(8):3996-4003</text></nplcit>;<nplcit id="ncit0060" npl-type="s"><text> Vogel et al., 2007. Invest Ophthalmol Vis Sci. 48(8):3872-7</text></nplcit>) which is preferred for use in the present invention is shown in SEQ ID NO: 122.</p>
<p id="p0068" num="0068">The nucleic acid sequence of an illustrative human GRK1 specific promoter (<nplcit id="ncit0061" npl-type="s"><text>Khani et al., 2007. Invest Ophthalmol Vis Sci. 48(9):3954-61</text></nplcit>; <nplcit id="ncit0062" npl-type="s"><text>Boye et al., 2012. Hum Gene Ther. 23(10):1101-15</text></nplcit>) which is preferred for use in the present invention is shown in SEQ ID NO: 123.</p>
<p id="p0069" num="0069">The nucleic acid sequence of an illustrative human RHO specific promoter (<nplcit id="ncit0063" npl-type="s"><text>Pellissier et al., 2014. Mol Ther Methods Clin Dev. 1:14009</text></nplcit>) which is preferred for use in the present invention is shown in SEQ ID NO: 124.</p>
<p id="p0070" num="0070">The nucleic acid sequence of an illustrative truncated CMV promoter (<nplcit id="ncit0064" npl-type="s"><text>Pellissier et al., 2014. Mol Ther Methods Clin Dev. 1:14009</text></nplcit>) is shown in SEQ ID NO: 133.</p>
<p id="p0071" num="0071">Particularly preferred gene therapy constructs of the present invention are the following: AAV-hGRK1-CRB2 (specific for rod and cone photoreceptors); AAV-hRHO-CRB2 (specific for rod but not cone photoreceptors); AAV-CMV-CRB2 (allows expression in rod+cone photoreceptors, Müller glia cells, and retinal pigment epithelium); AAV-CMV-CRB2-miRT (that reduces transcription in retinal pigment epithelium); AAV-truncatedRLBP1-CRB2; AAV-truncatedCMV-CRB2. AAV-hGRK1-CRB2 (specific for rod and cone photoreceptors) and AAV-hRHO-CRB2 (specific for rod but not cone photoreceptors) and AAV-CMV-CRB2 are most preferred.</p>
<p id="p0072" num="0072">The nucleic acid sequence of illustrative microRNA target sites (miRT's) to lower the expression of AAV transcript containing the miRT sequence in retinal pigment epithelium cells (<nplcit id="ncit0065" npl-type="s"><text>Karali et al., 2011. PLoS One. 6(7):e22166</text></nplcit>) which can be used in combination with the present invention is shown in SEQ ID NOs: 125-127. These sequences are the predicted and functional target sites in <i>e.g.,</i> the AAV-CMV-CRB2-miRT vector, not the miRNA sequences themselves. miRNAs, that recognize and<!-- EPO <DP n="25"> --> interfere with the translation of, or degrade, the target CRB2-miRT mRNA transcript, are expressed in the RPE. The skilled person is capable of using such miRTs in the present invention (see, for example,<nplcit id="ncit0066" npl-type="s"><text> Karali et al., 2011. PLoS One. 6(7):e22166</text></nplcit>).</p>
<p id="p0073" num="0073">In one embodiment, recombinant CRB2 protein is expressed in rod and cone photoreceptor cells, but not in retinal pigment epithelium or Müller glia cells. This can be achieved, for example, by applying the human photoreceptor specific rhodopsin kinase promoter according to SEQ ID NO: 123. As a result, the retina is protected against degeneration. A preferred gene therapy vector of the invention is hGRK1-hCRB2(In5)-spA using AAV2 ITR and AAV5 capsid proteins.</p>
<p id="p0074" num="0074">In one embodiment, the gene therapy vector may further comprise, operably linked to the nucleotide sequence encoding the CRB2 protein, one or more of the following: inverted terminal repeats, such as, for example, of any wild-type or mutant AAV; a promoter/enhancer, such as, for example, the CMV promoter/enhancer; a wild-type or synthetic transcription splice donor/acceptor site, such as, for example, In5; a wild-type or synthetic transcription poly-adenylation site, such as, for example, spA; one or more micro RNA target sites to reduce transcriptional activity in retinal cell types, such as, for example, the retinal pigment epithelium. In one embodiment, the gene therapy vector according to the invention comprises a wild-type, mutant or codon-optimized DNA sequence encoding wild-type or mutant CRB2 proteins of any species.</p>
<p id="p0075" num="0075">In one embodiment, a wild-type or synthetic transcription splice donor/acceptor site, such as, for example, synthetic intron (In5) may be inserted in the gene therapy vector for stable transcript processing of CRB2. A preferred nucleic acid sequence of an illustrative synthetic intron (In5) in the coding sequence of the Crumbs homologue (CRB) gene is shown in SEQ ID NO: 128. The intron is preferably inserted into CRB2 cDNA between two adjacent exons with a sequence of exon NNNAG/intron/GNNN exon, where G, A, T, C stands for one of the four nucleotides, and N stands for any of the four nucleotides.</p>
<p id="p0076" num="0076">In one embodiment, the gene therapy vector according to the invention comprises a nucleotide sequence encoding a CRB2 protein comprising an amino acid sequence that has at least 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%<!-- EPO <DP n="26"> --> preferably at least 100% sequence identity with the amino acid sequence of SEQ ID NO: 40 and wherein the promoter is the CMV promoter according to SEQ ID NO: 121.</p>
<p id="p0077" num="0077">In one embodiment, the gene therapy vector according to the invention comprises a nucleotide sequence encoding a CRB2 protein comprising an amino acid sequence that has at least 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% preferably at least 100% sequence identity with the amino acid sequence of SEQ ID NO: 40 and wherein the promoter is the human photoreceptor specific rhodopsin kinase promoter according to SEQ ID NO: 123.</p>
<p id="p0078" num="0078">The similarity between the CRB family member sequences from different species is readily recognized by those with skills in the art of the field.</p>
<p id="p0079" num="0079">CRB homologue consensus regions, as illustrated by reference to amino acid positions of consensus sequence SEQ ID NO: 77, are: amino acid positions 265-1515, 1555-2068, and 2083-2146. CRB variable regions are amino acid positions 1-264, 1516-1554, and 2069-2082. Other notable regions of the CRB consensus alignment may or may not include:
<ol id="ol0003" compact="compact" ol-style="">
<li>(1) epidermal growth factor like domains at amino acid positions 265 to 301, 304 to 341, 346 to 384, 386 to 423, 425 to 461, 462 to 498, 499 to 530, 543 to 579, 580 to 609, 607 to 644, 646 to 683, 685 to 721, 723 to 759, 761 to 798, 800 to 836, 838 to 900, 902 to 938, 940 to 976, 978 to 1019, 1205 to 1241, 1479 to 1515, 1756 to 1792, 1794 to 1830, 1832 to 1868, 1871 to 1912, 1912 to 1948, 1950 to 1987, 1989 to 2027, 2028 to 2068 of the consensus sequence (known to be essential for activity in polarized cells such as photoreceptors and Müller glia cells - see, <i>e.g.,</i> <nplcit id="ncit0067" npl-type="s"><text>Richard et al., 2006. Hum Mol Genet. 15 Spec No 2:R235-43</text></nplcit>; <nplcit id="ncit0068" npl-type="s"><text>van de Pavert et al., 2007. Glia. 55(14):1486-97</text></nplcit>);</li>
<li>(2) laminin G-like domain at amino acid positions 1021 to 1203, 1248 to 1478, and 1555 to 1755 of the consensus sequence (known to be essential for cell adhesion, signalling, migration, assembly, and differentiation activity);</li>
<li>(3) a transmembrane domain at amino acid position 2083 to 2109;<!-- EPO <DP n="27"> --></li>
<li>(4) a highly conserved 37-amino acid C-terminal region containing a FERM-protein and C-terminal PDZ-protein binding motifs at amino acid position 2110 to 2146 (<nplcit id="ncit0069" npl-type="s"><text>Richard et al., 2006. Hum Mol Genet. 15 Spec No 2:R235-43</text></nplcit>).</li>
</ol></p>
<p id="p0080" num="0080">In a second aspect, the present invention relates to a nucleic acid construct, preferably an isolated nucleic acid construct, comprising a nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein and at least one parvoviral inverted terminal repeat (ITR) sequence, wherein the nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein is operably linked to expression control elements comprising a promoter that is capable of sufficient CRB2 protein expression to obtain a therapeutic effect.</p>
<p id="p0081" num="0081">In a third aspect, the present invention relates to a virion, comprising an AAV vector according to the present invention. In one embodiment, the virion is an AAV virion.</p>
<p id="p0082" num="0082">In a fourth aspect, the present invention relates to a host cell comprising an AAV vector according to the invention. In one embodiment, the host cell is a mammalian or an insect host cell as defined herein above. If the host cell is a mammalian host cell, then preferably that host cell is a human host cell.</p>
<p id="p0083" num="0083">In a fifth aspect, the present invention relates to a pharmaceutical composition comprising an AAV vector according to the invention, or a virion according to the invention, and a pharmaceutically acceptable excipient.</p>
<p id="p0084" num="0084">Pharmaceutically acceptable excipients are well-known by the person skilled in the art. Examples of pharmaceutically acceptable excipients are a buffer, a carrier, a vehicle or a diluent. Preferably, the pharmaceutical composition further comprises one or more of the following: a lipid, a liposome, a lipid complex, an ethosome, a niosome, a nanoparticle, a microparticle, a liposphere, a nanocapsule, or any combination thereof.</p>
<p id="p0085" num="0085">In one embodiment, the pharmaceutical composition may be formulated for administration to the human eye. Typically, the pharmaceutical composition is<!-- EPO <DP n="28"> --> administered by direct injection into the retina or the surrounding tissue. More specifically, the pharmaceutical composition needs to be suitable for subretinal or intravitreal injection and thus needs to be a sterile and isotonic fluid, using NaCl or sugars. In this regard, reference is made to International publications <patcit id="pcit0006" dnum="WO2012114090A"><text>WO 2012/114090</text></patcit> and <patcit id="pcit0007" dnum="WO2011133933A"><text>WO 2011/133933</text></patcit>.</p>
<p id="p0086" num="0086">In a sixth aspect, the invention relates to a kit comprising: (a) an AAV vector according to the present invention, a virion according to the present invention, or a pharmaceutical composition according to the present invention; and (b) instructions for using the AAV vector or pharmaceutical composition according to (a) in the prevention, treatment, or amelioration of one or more symptoms of a retinal disorder due to mutations in <i>CRB1</i> gene.
<tables id="tabl0001" num="0001">
<table frame="all">
<title><b>Table 1: List of SEQ ID NO's with species, genes and accession numbers</b></title>
<tgroup cols="4">
<colspec colnum="1" colname="col1" colwidth="16mm"/>
<colspec colnum="2" colname="col2" colwidth="48mm"/>
<colspec colnum="3" colname="col3" colwidth="43mm"/>
<colspec colnum="4" colname="col4" colwidth="60mm"/>
<thead valign="top">
<row>
<entry><b>SEQ ID NO:</b></entry>
<entry><b>Species</b></entry>
<entry><b>Gene</b></entry>
<entry><b>UniProtKB/Swiss-Prot accession number</b></entry></row></thead>
<tbody>
<row>
<entry>1</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB 1 isoform 1</entry>
<entry>P82279-1</entry></row>
<row>
<entry>2</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB 1 isoform 2</entry>
<entry>P82279-2</entry></row>
<row>
<entry>3<sup>1</sup></entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB 1 isoform 3</entry>
<entry>P82279-3</entry></row>
<row>
<entry>4</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB 1 isoform 4</entry>
<entry>P82279-4</entry></row>
<row>
<entry>5</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB 1 isoform 5</entry>
<entry>P82279-5</entry></row>
<row>
<entry>6</entry>
<entry><i>Mus musculus</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>Q8VHS2-1</entry></row>
<row>
<entry>7</entry>
<entry><i>Mus musculus</i></entry>
<entry>CRB 1 isoform 2</entry>
<entry>Q8VHS2-2</entry></row>
<row>
<entry>8<sup>2</sup></entry>
<entry><i>Mus musculus</i></entry>
<entry>CRB 1 isoform 3</entry>
<entry>Q8VHS2-3</entry></row>
<row>
<entry>9</entry>
<entry><i>Mus musculus</i></entry>
<entry>CRB 1 isoform 4</entry>
<entry>Q8VHS2-4</entry></row>
<row>
<entry>10</entry>
<entry><i>Rattus norvegicus</i></entry>
<entry>CRB 1 isoform 1</entry>
<entry>D3ZZL8</entry></row>
<row>
<entry>11</entry>
<entry><i>Spermophilus tridecemlineatus</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>I3MCW9</entry></row><!-- EPO <DP n="29"> -->
<row>
<entry>12</entry>
<entry><i>Pongo abelii<sup>3</sup></i></entry>
<entry>CRB1 isoform 1</entry>
<entry>H2N4A7</entry></row>
<row>
<entry>13</entry>
<entry><i>Pan troglodytes</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>H2R3X3</entry></row>
<row>
<entry>14<sup>4</sup></entry>
<entry><i>Nomascus leucogenys</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>G1S8V2</entry></row>
<row>
<entry>15</entry>
<entry><i>Gorilla gorilla</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>G3RZV2</entry></row>
<row>
<entry>16</entry>
<entry><i>Gorilla gorilla</i></entry>
<entry>CRB1 isoform 2</entry>
<entry>G3SK60</entry></row>
<row>
<entry>17</entry>
<entry><i>Macaca mulatta</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>H9FS33</entry></row>
<row>
<entry>18<sup>5</sup></entry>
<entry><i>Macaca mulatta</i></entry>
<entry>CRB1 isoform 3</entry>
<entry>F7DFY1</entry></row>
<row>
<entry>19</entry>
<entry><i>Equus caballus</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>F7CHP4</entry></row>
<row>
<entry>20</entry>
<entry><i>Ailuropoda melanoleuca</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>D2HBN8</entry></row>
<row>
<entry>21</entry>
<entry><i>Ailuropoda melanoleuca</i></entry>
<entry>CRB1 isoform 2</entry>
<entry>G1MGT9</entry></row>
<row>
<entry>22</entry>
<entry><i>Bos taurus</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>F1N3A5</entry></row>
<row>
<entry>23</entry>
<entry><i>Cavia porcellus</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>H0VFY3</entry></row>
<row>
<entry>24</entry>
<entry><i>Callithrix jacchus</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>F7IHH9</entry></row>
<row>
<entry>25</entry>
<entry><i>Callithrix jacchus</i></entry>
<entry>CRB1 isoform 2</entry>
<entry>F6ULV9</entry></row>
<row>
<entry>26</entry>
<entry><i>Callithrix jacchus</i></entry>
<entry>CRB1 isoform 3</entry>
<entry>F7IHI1</entry></row>
<row>
<entry>27</entry>
<entry><i>Gallus gallus</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>E1BT21</entry></row>
<row>
<entry>28</entry>
<entry><i>Taeniopygia guttata</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>H0Z1J9</entry></row>
<row>
<entry>29</entry>
<entry><i>Meleagris gallopavo</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>G1N252</entry></row>
<row>
<entry>30</entry>
<entry><i>Danio rerio</i></entry>
<entry>CRB1</entry>
<entry>Q1A5L3</entry></row>
<row>
<entry>31<sup>6</sup></entry>
<entry><i>Takifugu rubripes</i></entry>
<entry>CRB1</entry>
<entry>H2RRM4</entry></row>
<row>
<entry>32</entry>
<entry><i>Pelodiscus sinensis</i></entry>
<entry>CRB1</entry>
<entry>K7G2S0</entry></row>
<row>
<entry>33</entry>
<entry><i>Monodelphis domestica</i></entry>
<entry>CRB1</entry>
<entry>F6UYP3</entry></row>
<row>
<entry>34</entry>
<entry><i>Canis familiaris</i></entry>
<entry>CRB1</entry>
<entry>F1Q0H7</entry></row>
<row>
<entry>35</entry>
<entry><i>Oryctolagus cuniculus</i></entry>
<entry>CRB1</entry>
<entry>G1TAK8</entry></row>
<row>
<entry>36</entry>
<entry><i>Caenorhabditis elegans</i></entry>
<entry>CRB1</entry>
<entry>Q19350</entry></row><!-- EPO <DP n="30"> -->
<row>
<entry>37<sup>7</sup></entry>
<entry><i>Xenopus tropicalis</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>F6URK2</entry></row>
<row>
<entry>38<sup>8</sup></entry>
<entry><i>Xenopus tropicalis</i></entry>
<entry>secretory protein CRB1 isoform 2</entry>
<entry>Q9IBG4</entry></row>
<row>
<entry>39</entry>
<entry><i>Anolis carolinensis</i></entry>
<entry>CRB1</entry>
<entry>not yet known</entry></row>
<row>
<entry>40</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>Q5IJ48-1</entry></row>
<row>
<entry>41</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB2 isoform 2</entry>
<entry>Q5IJ48-2</entry></row>
<row>
<entry>42</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB2 isoform 3</entry>
<entry>Q5IJ48-3</entry></row>
<row>
<entry>43</entry>
<entry><i>Pan troglodytes</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>H2R133</entry></row>
<row>
<entry>44</entry>
<entry><i>Macaca mulatto</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>H9F357</entry></row>
<row>
<entry>45</entry>
<entry><i>Macaca mulatto</i></entry>
<entry>CRB2 isoform 2</entry>
<entry>F7H6F4</entry></row>
<row>
<entry>46</entry>
<entry><i>Sus scrofa</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>F1SKU3</entry></row>
<row>
<entry>47</entry>
<entry><i>Spermophilus tridecemlineatus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>I3NFS4</entry></row>
<row>
<entry>48</entry>
<entry><i>Otolemur garnettii</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>H0XLX5</entry></row>
<row>
<entry>49</entry>
<entry><i>Bos taurus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>F1N2V0</entry></row>
<row>
<entry>50</entry>
<entry><i>Bos taurus</i></entry>
<entry>CRB2 isoform 2</entry>
<entry>G3MYX7</entry></row>
<row>
<entry>51</entry>
<entry><i>Loxodonta africana</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>G3SL69</entry></row>
<row>
<entry>52</entry>
<entry><i>Loxodonta africana</i></entry>
<entry>CRB2 isoform 2</entry>
<entry>G3U9Y6</entry></row>
<row>
<entry>53</entry>
<entry><i>Callithrix jacchus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>F7H2F5</entry></row>
<row>
<entry>54</entry>
<entry><i>Callithrix jacchus</i></entry>
<entry>CRB2 isoform 2</entry>
<entry>F7H7L7</entry></row>
<row>
<entry>55</entry>
<entry><i>Cavia porcellus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>H0VG27</entry></row>
<row>
<entry>56</entry>
<entry><i>Gorilla gorilla</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>G3SAT2</entry></row>
<row>
<entry>57</entry>
<entry><i>Gorilla gorilla</i></entry>
<entry>CRB2 isoform 2</entry>
<entry>G3RKD4</entry></row>
<row>
<entry>58</entry>
<entry><i>Mus musculus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>Q80YA8</entry></row>
<row>
<entry>59</entry>
<entry><i>Rattus norvegicus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>D4A3W2</entry></row>
<row>
<entry>60</entry>
<entry><i>Ailuropoda melanoleuca</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>G1LX36</entry></row>
<row>
<entry>61</entry>
<entry><i>Myotis lucifugus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>G1Q9U3</entry></row>
<row>
<entry>62</entry>
<entry><i>Oryctolagus cuniculus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>G1SWT6</entry></row>
<row>
<entry>63</entry>
<entry><i>Monodelphis domesti</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>F6UYP3</entry></row><!-- EPO <DP n="31"> -->
<row>
<entry>64</entry>
<entry><i>Sarcophilus harrisii</i></entry>
<entry>CRB1 isoform 1</entry>
<entry>G3W2U0</entry></row>
<row>
<entry>65</entry>
<entry><i>Sarcophilus harrisii</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>G3WDZ2</entry></row>
<row>
<entry>66</entry>
<entry><i>Sarcophilus harrisii</i></entry>
<entry>CRB2 isoform 2</entry>
<entry>G3WDZ3</entry></row>
<row>
<entry>67</entry>
<entry><i>Otolemur garnettii</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>H0XLX5</entry></row>
<row>
<entry>68</entry>
<entry><i>Danio rerio</i></entry>
<entry>CRB2a</entry>
<entry>Q1A5L2</entry></row>
<row>
<entry>69</entry>
<entry><i>Danio rerio</i></entry>
<entry>CRB2b</entry>
<entry>I3VKD7</entry></row>
<row>
<entry>70</entry>
<entry><i>Latimeria chalumnae</i></entry>
<entry>CRB</entry>
<entry>H3BHZ4</entry></row>
<row>
<entry>71<sup>9</sup></entry>
<entry><i>Takifugu rubripes</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>H2UG 11</entry></row>
<row>
<entry>72</entry>
<entry><i>Gallus gallus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>F1P3N1</entry></row>
<row>
<entry>73</entry>
<entry><i>Gallus gallus</i></entry>
<entry>CRB2 isoform 2</entry>
<entry>E1BYW1</entry></row>
<row>
<entry>74</entry>
<entry><i>Taeniopygia guttata</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>H0Z9G5</entry></row>
<row>
<entry>75</entry>
<entry><i>Pelodiscus sinensis</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>K7FFW6</entry></row>
<row>
<entry>76<sup>10</sup></entry>
<entry><i>Xenopus tropicalis</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>F6QPR5</entry></row>
<row>
<entry>77</entry>
<entry><i>Drosophila melanogaster</i></entry>
<entry>CRB</entry>
<entry>P10040</entry></row>
<row>
<entry>78</entry>
<entry><i>Daphnia pulex</i></entry>
<entry>CRB</entry>
<entry>E9GB00</entry></row>
<row>
<entry>79</entry>
<entry><i>Acyrthosiphon pisum</i></entry>
<entry>CRB</entry>
<entry>J9JPN0</entry></row>
<row>
<entry>80</entry>
<entry><i>Acromyrmex echinatior</i></entry>
<entry>CRB</entry>
<entry>F4WXJ1</entry></row>
<row>
<entry>81</entry>
<entry><i>Branchiostoma floridae</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>C3Y2J2</entry></row>
<row>
<entry>82</entry>
<entry><i>Strongylocentrotus purpuratus</i></entry>
<entry>CRB2 isoform 1</entry>
<entry>H3J1J1</entry></row>
<row>
<entry>83</entry>
<entry><i>Anolis carolinensis</i></entry>
<entry>CRB2</entry>
<entry>not yet known</entry></row>
<row>
<entry>84</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB3 isoform A</entry>
<entry>Q9BUF7-1</entry></row>
<row>
<entry>85</entry>
<entry><i>Mus musculus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>Q8QZT4-1</entry></row>
<row>
<entry>86</entry>
<entry><i>Callithrix jacchus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>F7I870</entry></row>
<row>
<entry>87</entry>
<entry><i>Macaca mulatto</i></entry>
<entry>CRB3 isoform A</entry>
<entry>F6WKB4</entry></row>
<row>
<entry>88</entry>
<entry><i>Ailuropoda melanoleuca</i></entry>
<entry>CRB3 isoform A</entry>
<entry>G1LKJ7</entry></row><!-- EPO <DP n="32"> -->
<row>
<entry>89</entry>
<entry><i>Sus scrofa</i></entry>
<entry>CRB3 isoform A</entry>
<entry>F1SBS8</entry></row>
<row>
<entry>90</entry>
<entry><i>Sus scrofa</i></entry>
<entry>CRB2 isoform 3</entry>
<entry>F1SKU4</entry></row>
<row>
<entry>91</entry>
<entry><i>Otolemur garnettii</i></entry>
<entry>CRB3 isoform A</entry>
<entry>H0WXN3</entry></row>
<row>
<entry>92</entry>
<entry><i>Myotis lucifugus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>G1PSN7</entry></row>
<row>
<entry>93</entry>
<entry><i>Loxodonta africana</i></entry>
<entry>CRB3 isoform A</entry>
<entry>G3TBW3-1</entry></row>
<row>
<entry>94</entry>
<entry><i>Spermophilus tridecemlineatus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>I3M0B8</entry></row>
<row>
<entry>95</entry>
<entry><i>Homo sapiens</i></entry>
<entry>CRB3 isoform B</entry>
<entry>Q9BUF7-2</entry></row>
<row>
<entry>96</entry>
<entry><i>Equus caballus</i></entry>
<entry>CRB3 isoform A isoform 1</entry>
<entry>F6RUX8</entry></row>
<row>
<entry>97</entry>
<entry><i>Equus caballus</i></entry>
<entry>CRB3 isoform A isoform 2</entry>
<entry>F6Z0G7</entry></row>
<row>
<entry>98</entry>
<entry><i>Rattus norvegicus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>Q4V8I0</entry></row>
<row>
<entry>99</entry>
<entry><i>Cavia porcellus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>H0VZN0</entry></row>
<row>
<entry>100</entry>
<entry><i>Sarcophilus harrisii</i></entry>
<entry>CRB3 isoform A</entry>
<entry>G3WE86</entry></row>
<row>
<entry>101</entry>
<entry><i>Cricetulus griseus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>G3HCL1</entry></row>
<row>
<entry>102</entry>
<entry><i>Danio rerio</i></entry>
<entry>CRB3 isoform A isoform 1</entry>
<entry>Q1A5L0</entry></row>
<row>
<entry>103</entry>
<entry><i>Danio rerio</i></entry>
<entry>CRB3 isoform A isoform 2</entry>
<entry>Q1A5K9</entry></row>
<row>
<entry>104</entry>
<entry><i>Gasterosteus aculeatus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>G3P8A8</entry></row>
<row>
<entry>105<sup>11</sup></entry>
<entry><i>Xenopus tropicalis</i></entry>
<entry>CRB3 isoform A</entry>
<entry>Q5EGD4</entry></row>
<row>
<entry>106</entry>
<entry><i>Tetraodon nigroviridis</i></entry>
<entry>CRB3 isoform A</entry>
<entry>Q4SE18</entry></row>
<row>
<entry>107</entry>
<entry><i>Strongylocentrotus purpuratus</i></entry>
<entry>CRB3 isoform A</entry>
<entry>H3I971</entry></row>
<row>
<entry>108</entry>
<entry><i>Mus musculus</i></entry>
<entry>CRB3 isoform B</entry>
<entry>Q8QZT4-2</entry></row>
<row>
<entry>109</entry>
<entry><i>Callithrix jacchus</i></entry>
<entry>CRB3 isoform B</entry>
<entry>F6Z7P9</entry></row>
<row>
<entry>110</entry>
<entry><i>Macaca fascicularis</i></entry>
<entry>CRB3 isoform B</entry>
<entry>G8F358</entry></row>
<row>
<entry>111</entry>
<entry><i>Macaca mulatta</i></entry>
<entry>CRB3 isoform B</entry>
<entry>F6WKC2</entry></row>
<row>
<entry>112</entry>
<entry><i>Ailuropoda melanoleuca</i></entry>
<entry>CRB3 isoform B</entry>
<entry>D2HY77</entry></row><!-- EPO <DP n="33"> -->
<row>
<entry>113</entry>
<entry><i>Pan troglodytes</i></entry>
<entry>CRB3 isoform B</entry>
<entry>H2QF51</entry></row>
<row>
<entry>114<sup>12</sup></entry>
<entry><i>Nomascus leucogenys</i></entry>
<entry>CRB3 isoform B</entry>
<entry>G1S1D6</entry></row>
<row>
<entry>115</entry>
<entry><i>Gorilla gorilla</i></entry>
<entry>CRB3 isoform B</entry>
<entry>G3QVX7</entry></row>
<row>
<entry>116<sup>13</sup></entry>
<entry><i>Pongo abelii</i></entry>
<entry>CRB3 isoform B</entry>
<entry>H2NX84</entry></row>
<row>
<entry>117</entry>
<entry><i>Heterocephalus glaber</i></entry>
<entry>CRB3 isoform B</entry>
<entry>G5C4F3</entry></row>
<row>
<entry>118</entry>
<entry><i>Brugia malayi</i></entry>
<entry>CRB3</entry>
<entry>A8PUD4</entry></row>
<row>
<entry>119</entry>
<entry><i>Caenorhabditis elegans</i></entry>
<entry>CRB3</entry>
<entry>A0FLQ5</entry></row>
<row>
<entry>120</entry>
<entry><i>Caenorhabditis remanei</i></entry>
<entry>CRB3</entry>
<entry>E3MAT4</entry></row></tbody></tgroup>
<tgroup cols="4" rowsep="0">
<colspec colnum="1" colname="col1" colwidth="16mm" align="justify"/>
<colspec colnum="2" colname="col2" colwidth="48mm"/>
<colspec colnum="3" colname="col3" colwidth="43mm"/>
<colspec colnum="4" colname="col4" colwidth="60mm"/>
<tbody>
<row>
<entry namest="col1" nameend="col4"><sup>1</sup> Also known as: <i>short CRB1, sCRB1, CRB1dE3</i>/<i>4, CRB1Δ3</i>/<i>4, CRB1ΔE3</i>/<i>4</i> (<nplcit id="ncit0070" npl-type="s"><text>Kantardzhieva et al., 2005. Invest Ophthalmol Vis Sci. 46(6):2192-201</text></nplcit>)<br/>
<sup>2</sup> Also known as: Crb1s<br/>
<sup>3</sup> <i>Pongo pygmaeus abelii</i><br/>
<sup>4</sup> <i>Hylobates leucogenys</i><br/>
<sup>5</sup> Also known as: <i>short CRB1 or sCRB1 or CRB1dE3</i>/<i>4 or CRB1Δ3</i>/<i>4 or CRB1ΔE3</i>/<i>4</i><br/>
<sup>6</sup> <i>Fugu rubripes</i><br/>
<sup>7</sup> <i>Xenopus</i> sp.<br/>
<sup>8</sup> <i>Xenopus</i> sp.<br/>
<sup>9</sup> <i>Fugu rubripes</i><br/>
<sup>10</sup> <i>Xenopus</i> sp.<br/>
<sup>11</sup> <i>Xenopus</i> sp.<br/>
<sup>12</sup> <i>Hylobatus leucogenys</i><br/>
<sup>13</sup> <i>Pongo pygmaeus abelii</i></entry></row></tbody></tgroup>
</table>
</tables>
<tables id="tabl0002" num="0002">
<table frame="all">
<title><b>Table 2: List of SEQ ID NO's and their description</b></title>
<tgroup cols="2">
<colspec colnum="1" colname="col1" colwidth="31mm"/>
<colspec colnum="2" colname="col2" colwidth="135mm"/>
<thead valign="top">
<row>
<entry><b>SEQ ID NO:</b></entry>
<entry><b>Description</b></entry></row></thead>
<tbody>
<row>
<entry>121</entry>
<entry>CMV promoter flanked at the 5' end with a BglII restriction site (AGATCT)</entry></row>
<row>
<entry>122</entry>
<entry>Human RLBP1 promoter</entry></row>
<row>
<entry>123</entry>
<entry>Human GRK1 specific promoter</entry></row>
<row>
<entry>124</entry>
<entry>Human RHO specific promoter</entry></row>
<row>
<entry>125</entry>
<entry>miR-31-5p target sites</entry></row>
<row>
<entry>126</entry>
<entry>miR-126-3p target sites</entry></row>
<row>
<entry>127</entry>
<entry>miR-211 / miR-204 target sites</entry></row>
<row>
<entry>128</entry>
<entry>illustrative synthetic intron (ln5) in coding sequence of the CRB gene</entry></row>
<row>
<entry>129</entry>
<entry>illustrative synthetic polyadenylation region flanked at the 3' end with a BglII restriction site (AGATCT)</entry></row>
<row>
<entry>130</entry>
<entry>Illustrative 5' untranslated region</entry></row>
<row>
<entry>131</entry>
<entry>AAV2 inverted terminal repeat flanked at the 3' end with a BglII restriction site (AGATCT)</entry></row>
<row>
<entry>132</entry>
<entry>AAV2 inverted terminal repeat flanked at the 5' end with a BglII restriction site (AGATCT)</entry></row>
<row>
<entry>133</entry>
<entry>Truncated CMV promoter or minimal CMV promoter</entry></row></tbody></tgroup>
</table>
</tables><!-- EPO <DP n="34"> --></p>
<heading id="h0007"><b>DESCRIPTION OF THE FIGURES</b></heading>
<p id="p0087" num="0087">
<ul id="ul0001" list-style="none">
<li><figref idref="f0001"><b>Figure 1</b></figref><b>.</b> A representative presentation of the localization of CRB 1 in the human retina.</li>
<li><figref idref="f0002"><b>Figure 2</b></figref><b>.</b> A representative presentation of the localization of CRB 1 in the mouse retina.</li>
<li><figref idref="f0003"><b>Figure 3</b></figref><b>.</b> A representation of the mammalian Crumbs homologue protein family.</li>
<li><figref idref="f0004"><b>Figure 4</b></figref><b>.</b> Degeneration in the ventral but not in the dorsal retina of <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/+</sup> <i>Chx10Cre</i>/+ mice. A-E, Technovit sections. <b>Left panels,</b> dorsal (superior) retina. <b>Right panels,</b> ventral (inferior) retina.</li>
<li><figref idref="f0005 f0006"><b>Figure 5</b></figref><b>.</b> Electroretinogram b-waves of <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/</sup><i><sup>+</sup>Chx10Cre</i>/+ mice (on 50% C57BL/6J and 50% 129/Ola genetic background) showing loss of retinal activity at 3 months of age. Note that wild-type, <i>Crb1</i><sup><i>-</i>/<i>-</i></sup> and <i>Crbl<sup>-l-</sup>Crb2</i><sup><i>F</i>/<i>F</i></sup> mice (not containing <i>Chx10Cre</i>) do not show differences in retinal activity (data not shown). <b>Panel a,</b> scotopic ERG showing loss of rod photoreceptor activity in <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/</sup><i><sup>+</sup>Chx10Cre</i> retinas (light grey; lower line) vs. <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/<i>F</i></sup> retinas (dark grey; upper line). <b>Panel b,</b> photopic ERG showing loss of cone photoreceptor activity in <i>Crbl</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/</sup><i><sup>+</sup>Chx10Cre</i> retinas (light grey; lower line)) vs. <i>Crbl<sup>-l-</sup>Crb2</i><sup><i>F</i>/<i>F</i></sup> retinas (dark grey; upper line).</li>
<li><figref idref="f0007"><b>Figure 6</b></figref><b>.</b> Loss of a separate photoreceptor layer in <i>Crb1<sup>-l-</sup>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i> /+ retinas. A-E, Technovit sections. Left panels, control retina. Middle panels, <i>Crb1<sup>+l-</sup> Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>/+ retinas. Right panels, <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>/+ retinas showing absence of a separate photoreceptor layer and mislocalized retinal cells.</li>
<li><figref idref="f0008 f0009"><b>Figure 7</b></figref><b>.</b> Loss of retinal activity in <i>Crb1Crb2</i> cKO compared to <i>Crb1</i> and <i>Crb2</i> cKO retinas. <b>Panels a</b> and <b>c,</b> measured ERGs at 3 months of age. <b>Panels b</b> and <b>d</b>, measured ERGs at 1 months of age. <b>Panels a</b> and <b>b,</b> scotopic. <b>Panels c</b> and <b>d,</b> photopic. Note, at 3 months of age, the very good separation of confidence intervals in b-wave amplitude between <i>Crb1</i> KO and <i>Crb2</i> cKO retinas. The lines in the figures represent the following: the upper most line concerns <i>Crb1</i> KO, second from the top is <i>Crb2</i> KO, third from the top is <i>Crb1</i><sup><i>+</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i> (heterozygote <i>Crb1</i><sup>+<i>l-</i></sup> homozygote floxed <i>Crb2</i><sup><i>F</i>/<i>F</i></sup><!-- EPO <DP n="35"> --> heterozygote <i>ChxlOCre</i>)<i>,</i> the bottom line is <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i> (homozygote <i>Crb1</i><sup><i>-</i> /-</sup> homozygote floxed <i>Crb2</i><sup><i>F</i>/<i>F</i></sup> heterozygote <i>Chx10Cre</i>)<i>.</i></li>
<li><figref idref="f0010"><b>Figure 8</b></figref><b>.</b> Upon subretinal injection, AAV9-CMV-GFP and ShH10Y-CMV-GFP infect Müller glia cells and photoreceptors. Abbreviations: GCL, ganglion cells; PRC, photoreceptor cells; RPE, retinal pigment epithelium cells.</li>
<li><figref idref="f0011"><b>Figure 9</b></figref><b>.</b> Expression of short CRB 1 (SEQ ID NO: 3) in <i>Crb1</i> KO retinas using subretinal injection of AAV2/9-CMV-sCRB1 vectors. <b>Panel a</b>, control <i>Crb1</i> KO retina. <b>Panel b</b>, <i>Crb1</i> KO retina expressing sCRB1 upon transduction with AAV2/9-CMV-sCRB 1 viral particles. Abbreviations: OLM, outer limiting membrane; OPL, outer plexiform layer. Note: Expression of sCRB1 caused retinal degeneration in about half of the transduced retina (degeneration data not shown).</li>
<li><figref idref="f0011 f0012"><b>Figure 10</b></figref><b>.</b> Representative experiment showing rescue of loss of retinal activity. <i>Crb2</i> cKO retinas were injected at postnatal day 23 subretinally with 10<sup>10</sup> AAV2/ShH10Y-CMV-CRB2 or AAV2/ShH10Y-CMV-GFP viral particles and analyzed for ERG and immunohistochemistry at 3 months of age. <b>Panel a,</b> electroretinogram scotopic b-wave showing rescue of retinal activity in the right <i>Crb2</i> cKO eye transduced with AAV2/ShH10Y-CMV-CRB2 (dark line), compared to the left eye of the same <i>Crb2</i> cKO transduced with AAV2/ShH10Y-CMV-GFP (faint line). The scotopic a-wave is also rescued (data not shown). <b>Panel b,</b> immunohistochemistry showing expression of sCRB 1 in the right eye of the animal used in panel a. No expression of CRB2 was detected in the left eye of the same animal. Abbreviations: OLM, outer limiting membrane; RPE retinal pigment epithelium.</li>
<li><figref idref="f0012"><b>Figure 11</b></figref>. Specific transduction of Müller glia cells using 10<sup>10</sup> AAV2/6-RLBP1-GFP viral particles containing the human RLBP1 promoter (SEQ ID NO: 122) upon intravitreal injection (specific infection of Müller glia cells). Retinas were collected 3 weeks post-infection. <b>Panel a,</b> scanning-laser-ophtalmoscopy (SLO). <b>Panel b,</b> SLO showing fluorescent cells. <b>Panel c,</b> immunohistochemistry showing specific expression of GFP in Müller glia cells.<!-- EPO <DP n="36"> --></li>
<li><figref idref="f0013"><b>Figure 12</b></figref><b>.</b> AAV6 and ShH10Y capsids transduce adult human Müller glia cells. 1 µL 10<sup>13</sup> genome copies per mL of AAV2/6-CMV-GFP-WPRE-pA <b>(panel a)</b> or AAV6 variant AAV2/ShH10-CMV-GFP-WPRE-pA <b>(panel b)</b> was applied to pieces of cultured adult human retina. GFP expression was detected in Müller glia cells.</li>
<li><figref idref="f0013"><b>Figure 13</b></figref><b>.</b> GFP and CRB1 protein expression in cell lines. Western Blotting of HEK293T cell lysates transfected with the calcium phosphate method and 10 µg of pAAV-CMV-GFP-WPRE-pA or pAA V-CMV-hCRB1-pA vectors showed subsequent CRB 1 and GFP protein levels. However, whereas RPE-derived ARPE-19 cells expressed normal amount of GFP, CRB 1 protein is just above detection level in three times overloaded protein lysates.</li>
<li><figref idref="f0014 f0015 f0016 f0017"><b>Figure 14</b></figref><b>.</b> Rescue of loss of retinal function by <i>subretinal</i> injection of AAV2/9-CRB2 viral particles in <i>Crb</i> mutant mouse eyes; failure of rescue of retinal function by AAV2/9-CRB1 viral particles. <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/+</sup><i>Chx10Cre</i><sup><i>Tg</i>/+</sup> (<i>Crb1Crb2</i><sup><i>F</i>/+</sup> cKO; <b>a-f)</b> and <i>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i><sup><i>Tg</i>/+</sup> (<i>Crb2</i> cKO; <b>g-h</b>) mouse retinas injected subretinally at 2 weeks of age with 1 µL of 2 × 10<sup>10</sup> genome copies of 4.9 kb AAV2/9-CMV-CRB2-In5-spA (briefly AAV2/9-CRB2), <i>i.e.</i>, CRB2 flanked by AAV2 ITRs and packaged in AAV9 capsid proteins and in the contralateral control eye with AAV2/9-CMV-GFP (a-c, g-h), or with 1 µL of 1 × 10<sup>10</sup> genome copies of 4.8 kb AAV2-minimalCMV-CRB 1-spA (minimal CMV presented as SEQ ID NO: 133 in the sequence listing) containing AAV9 viral particles and in the contralateral control eye with AAV2/9-minCMV-GFP <b>(d-f),</b> and analyzed at 3 or 4 months of age by electroretinography under scotopic (dark-adapted; <b>a-b, d-e, g-h)</b> or photopic (light-adapted; <b>c, f</b>) conditions. Scotopic b-wave amplitudes <b>(a, d, g)</b> and a-wave amplitudes <b>(b, e, h),</b> and photopic b-wave amplitudes <b>(c, f)</b> are indicated. CRB2 vectors rescued loss of retinal function in two different <i>Crb</i> mutant mouse models <b>(a-c, g-h),</b> whereas CRB 1 vectors did not rescue loss of retinal function <b>(d-f).</b></li>
<li><figref idref="f0018 f0019 f0020"><b>Figure 15</b></figref><b>.</b> Toxicity of CRB proteins tested by intravitreal injection of AAV2/ShH10Y-minimalCMV-CRB 1-In5-spA or AAV2/ShH10Y-CMV-CRB2-In5-spA viral particles in <i>Crb</i> mutant mouse eyes, <i>i.e.,</i> CRB2 or CRB1 DNA operably linked to the promoter that is indicated, flanked by AAV2 ITRs and packaged in ShH10Y capsid proteins. <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup> Crb2</i><sup><i>F</i>/+</sup><i>Chx10Cre</i><sup><i>Tg</i>/+</sup> (<i>Crb1Crb2</i><sup><i>F</i>/+</sup> cKO; <b>a-e</b>) mouse retinas injected intravitreally at<!-- EPO <DP n="37"> --> 2 weeks of age with 1 µL of 10<sup>10</sup> genome copies of 4.9 kb AAV2/ShH10Y-CMV-CRB2-In5-spA and in the contralateral control eye with AAV2/ShH10Y-CMV-GFP <b>(a-b),</b> or with 1 µL of 5 × 10<sup>9</sup> genome copies 4.8 kb AAV2/ShH10Y-minimalCMV-CRB1-In5-spA containing ShH10Y viral particles and in the contralateral control eye with AAV2/ShH10Y-minimalCMV-GFP <b>(c-e).</b> The eyes were analyzed at 3 months of age by electroretinography under scotopic (dark-adapted; <b>a-b, c-d</b>) or photopic (light-adapted; <b>e)</b> conditions. Scotopic b-wave amplitudes <b>(a, c)</b> and a-wave amplitudes <b>(b, d),</b> and photopic b-wave amplitudes <b>(e)</b> are indicated. No statistically significant differences in retinal function were detected for intravitreally applied CRB2 vectors compared to GFP control vectors <b>(a-b).</b> Intravitreally applied CRB1 vectors showed strongly reduced retinal responses upon expression of CRB1 vectors, suggesting toxic effects by CRB1 vectors.</li>
</ul></p>
<heading id="h0008"><b>EXAMPLES</b></heading>
<heading id="h0009"><b><u>Description of the mouse models</u></b></heading>
<heading id="h0010"><i><u>Crb1</u></i><sup><u><i>-</i>/+</u></sup><i><u>Crb2</u></i><sup><u><i>F</i>/</u></sup><i><sup><u>F</u></sup></i><u><i>Chx10Cre</i>/+ and</u> <i><u>Crb1</u></i><sup><u><i>-</i>/</u></sup><i><sup><u>-</u></sup><u>Crb2</u></i><sup><u><i>F</i>/</u></sup><i><sup><u>F</u></sup></i><u><i>Chx10Cre</i>/+ mice</u></heading>
<p id="p0088" num="0088">Retinas of <i>Crbl</i><sup><i>-</i>/+</sup><i>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>/+ mice (heterozygote for <i>Crb1,</i> homozygote for floxed <i>Crb2</i>) show to some extent a similar but more severe phenotype than observed in <i>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>/+ retinas. Electroretinography showed a significant loss of retinal activity at 1 month of age that progressed quickly. The phenotype starts already at E15.5 (at this time point similar to E17.5 in <i>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>/+ retinas), with disruptions at the outer limiting membrane, and rosettes of retinal cells can be detected. A major difference of these mouse retinas compared to the <i>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>/+ retinas is the aberrant localization of several retinal cell types. <i>E.g.,</i> some amacrine cells ectopically localize in the photoreceptor layer, and some cone and rod photoreceptors ectopically localize at the ganglion cell layer. Nevertheless, in these retinas there is still three nuclear layers (outer and inner, and ganglion) and two plexiform layers (outer and inner) suggesting that the lamination of the retina is grossly normal.<!-- EPO <DP n="38"> --></p>
<p id="p0089" num="0089">Retinas of <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>/+ mice (homozygote for <i>Crb1,</i> homozygote for floxed <i>Crb2;</i> also indicated as <i>Crb1Crb2</i> cKO) show the most severe phenotype <b>(</b><figref idref="f0007"><b>Fig. 6</b></figref><b>).</b> Electroretinography showed a severe loss of vision at 1 month of age (though there is still some retinal activity; <figref idref="f0008 f0009"><b>Fig. 7</b></figref>). These retinas do not show a separate photoreceptor layer (no outer and inner segment, nuclear or outer plexiform layer) and no outer plexiform layer but a single broad nuclear layer, an inner plexiform layer, and a ganglion cell layer. The nuclear layer contains nuclei of rod and cone photoreceptors, bipolar, horizontal, amacrine and Müller glia cells, but surprisingly also nuclei of ganglion cells. The inner plexiform layer only occasionally contains cell nuclei. The ganglion cell layer that normally contains nuclei of ganglion and displaced amacrine cells contains in addition nuclei of rod photoreceptors, bipolar, horizontal, Müller glia cells. So, whereas there is a laminated retina, several early as well as late born cells localized ectopically. Furthermore, there was a significant increase in dividing retinal progenitor cells at E15.5, E17.5, P1 and P5. Concomitant, there is an increase in late born cell types such as rod photoreceptors, bipolar, Müller glia, and late-born amacrine cells, but not in early born cell types such as ganglion, cone photoreceptors, horizontal, and early born amacrine cells. Increased apoptosis was detected at E13.5, E17.5, P1, P5, P14 and at 3 months of age. These data suggest that CRB proteins (CRB2 and CRB1) play a role in suppressing proliferation of late born retinal progenitor cells or timely exiting the cell cycle, in addition to maintaining the adherens junctions between retinal progenitor cells, rod and cone photoreceptors, bipolar and Müller glia cells.</p>
<heading id="h0011"><i><u>Crb1</u></i><sup><u><i>-</i>/</u></sup><i><sup><u>-</u></sup><u>Crb2</u></i><sup><u><i>F</i>/+</u></sup><u><i>Chx10Cre</i>/+ mice</u></heading>
<p id="p0090" num="0090">In <i>Crbl-1-Crb2F1</i>+<i>ChxlOCre</i>/+ mice the morphological phenotype starts at P10 (<figref idref="f0004">Fig. 4</figref>), and a significantly decreased ERG is detected at 3 months of age (data not shown) and is very clear at 6 months of age (whereas no decrease is detected in <i>Crb1</i><sup><i>-</i>/<i>-</i></sup> retinas). In these retinas, the dorsal (superior) part of the retina does not show retinal degeneration, whereas the ventral (inferior temporal and nasal) part does. This is in part reminiscent to <i>Crb1</i><sup><i>-</i>/<i>-</i></sup> retinas in which only one quadrant (inferior temporal) and <i>Crb1</i><sup><i>rd8</i>/<i>rd8</i></sup> retinas in which only one quadrant (inferior nasal) part of the retina shows (limited) retinal degeneration. These mice are useful for functionally testing our AAV CRB gene therapy vectors by<!-- EPO <DP n="39"> --> electroretinography (ERG) since control double heterozygote <i>Crb1</i><sup>+/-</sup> <i>Crb2</i><sup><i>F</i>/+</sup><i>Chx10Cre</i>/+ retinas do not show a morphological or ERG phenotype. Unfortunately, the confidence intervals for control and mutant mice (on 50% C57BL/6J and 50% 129/Ola mixed genetic background) at 3 and 6 months of age are very close to each other, rendering the model difficult for interpreting (partial) rescue studies. <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup> Crb2</i><sup><i>F</i>/+</sup><i>Chx10Cre</i>/+ mice on 99.9% C57BL/6J background are being produced and will provide less inter-mouse variation. As described below, we consider <i>Crb2</i><sup><i>F</i>/</sup><i><sup>F</sup>Chx10Cre</i>/+ retinas, which mimic loss of CRB1 in retinitis pigmentosa patients, as the best for rescue studies since their electroretinograms are easier to interpret.</p>
<heading id="h0012"><b><u>EXAMPLE 1- EXPRESSION OF SHORT HUMAN CRB1 IN IMMUNE NAÏVE CRB1 KNOCKOUT RETINA IS TOXIC</u></b></heading>
<p id="p0091" num="0091">It is important to note that there are alternative transcripts of the human <i>CRB1</i> gene. One transcript, lacking exons 3 and 4 but maintaining the open reading frame, encodes a shorter form than full length CRB1 but is present in human (SEQ ID NO: 3), and <i>e.g.,</i> apes, monkeys, canine, equine, feline and many other species, however not in mice. Notably, the sequence of CRB2 (SEQ ID NO: 40) is very similar to the sequence of this naturally occurring short variant of CRB1 (sCRB1 or sCRB1ΔE3/4). In our initial trials we generated AAV vectors with the CMV promoter, the short CRB1, a synthetic intron (In5) in the short CRB 1 cDNA sequence, and a synthetic spA. Upon subretinal injection of this vector packaged in AAV serotype 9 (AAV9), we detected significant expression of short CRB 1 at the "outer limiting membrane" in Müller glia cells and photoreceptors. Similarly, results were obtained with vector packaged in AAV serotype 5 (AAV5). We subretinally injected 1 µL of AAV2/9-CMV-hCRB1ΔE3/4In5-spA (1.00 × 10<sup>10</sup> delivered vector genomes) plus a ten-fold lower dose of AAV2/9-CMV-GFP-WPRE-pA (1.00 × 10<sup>9</sup> delivered vector genomes) into the left eye of retinas lacking CRB1 with reduced levels of CRB2 (<i>Crb1</i><sup>-/-</sup><i>Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> retinas). The contralateral control eye received 1 µL of AAV2/9-CMV-GFP-WPRE-pA (1.00 × 10<sup>10</sup> delivered vector genomes). <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> retinas show progressive loss of retinal function from 1 to 3 to 6 months of age (data not shown). The treated eyes showed expression of short CRB 1 in a large region of the retina at the "outer liming membrane" of Müller glia<!-- EPO <DP n="40"> --> cells and photoreceptors, and in retinal pigment epithelium. However, using two independently generated batches of the viral particles, we detected loss of the photoreceptor layer as well as retinal pigment epithelium layer due to expression of the short variant of CRB 1 in Müller glia cells or photoreceptors or retinal pigment epithelium both by histochemistry and by immunohistochemistry. The cause of these toxic effects is to be further analysed and may for example be <i>e.g.,</i> an immune-response in the CRB1 naive <i>Crb1</i> knockout retina, ectopic expression effect, incompatibility of mouse and human CRB 1 protein, differences between short and full length CRB1, interference of short CRB 1 with the expression of other CRB 1 transcripts or proteins, dose-dependent toxicity, untimely expression of short CRB1), and it might be related to the inability in producing continuous high level expression of short (or full length) CRB 1 in cultured cell lines. Preliminary studies expressing the short CRB 1 in wild-type C57BL/6J retina showed toxicity as well, suggesting that the toxicity is not only due to the expression of short human CRB1 in immune-naive <i>Crb1</i> knockout retina. This urged us to test expression of CRB2 in a therapeutic vector, since CRB2 expression was well tolerated in cell lines. Expression of CRB2 in Müller glia cells or photoreceptor cells or retinal pigment epithelium did not result in toxic effects. More specifically, expression of CRB2 in Muller glia cells or photoreceptor cells or retinal pigment epithelium did not result in a detectable loss of the photoreceptor layer and/or the retinal pigment epithelium layer. This lack of toxic effects of CRB2 expression in Müller glia cells and photoreceptor cells and retinal pigment epithelium is relevant to the development of future clinical applications. Note that we used very high levels of AAV-CRB2 vector (10<sup>10</sup> delivered vector genomes) but toxic effects were not detected.</p>
<heading id="h0013"><b><u>EXAMPLE 2- AAV-MEDIATED GENE THERAPY RESTORES VISUAL</u> <u>FUNCTION AND BEHAVIOR IN A MOUSE MODEL OF RETINITIS</u> <u>PIGMENTOSA (RP) DUE TO LOSS OF CRUMBS HOMOLOGUE (CRB)</u> <u>FUNCTION</u></b></heading>
<p id="p0092" num="0092">In this example, the Inventors evaluated whether delivery of a species-specific version of Crumbs homologue (CRB) <i>(i.e.,</i> human) to Müller glia cells and photoreceptors of the postnatal Crb2 cKO mouse could restore function to these cells. Serotype 6 (variant<!-- EPO <DP n="41"> --> ShH10Y) AAV vectors were used to deliver human CRB2 subretinally to Müller glia cells and photoreceptors of postnatal day 23 (P23) <i>Crb2</i> cKO mice. Electroretinogram (ERG) and behavioral testing were used to assess visual function and immunocytochemistry was used to examine therapeutic transgene expression, Crumbs homologue (CRB) complex protein localization and preservation of retinal structure in treated and untreated eyes.</p>
<p id="p0093" num="0093">This example demonstrates that an AAV vector subretinally delivered to the left eyes of P23 <i>Crb2</i> cKO mice facilitated expression of wild-type CRB2, restoration of visual function and behavior, and preservation of rod and cone photoreceptors. Ten weeks following injection, retinal function (ERG) was analyzed in treated and untreated eyes. In some experiments, ERG was performed every two weeks after 4 weeks until 10 weeks post injection (the latest time point evaluated). At 10 weeks post injection, all animals were sacrificed and their treated and untreated retinas were evaluated for expression of CRB2 and localization of Crumbs homologue (CRB) complex proteins.</p>
<p id="p0094" num="0094">The results confirm that rod-mediated and cone-mediated function was restored to treated eyes of <i>Crb2</i> cKO mice (ERG a-wave and b-wave amplitudes were about twice better than in the untreated eyes). Moreover, the treatment effect was stable for at least 10 weeks post-administration. Histology revealed AAV-mediated CRB2 expression in Müller glia cells and photoreceptors and a restoration of Crumbs homologue (CRB) complex protein location in treated mice. In addition, cone cell densities were higher in treated eyes than untreated contralateral controls. This result suggests that treatment is capable of preserving cone and rod photoreceptors for at least 10 weeks post treatment. This is the first demonstration that postnatal gene therapy is capable of restoring visual function and behavior to, and preserving retinal structure in, a mammalian model of RP due to mutations in the Crumbs homologue gene. Importantly, results were obtained using a well characterized, clinically relevant AAV vector; the <i>in vivo</i> animal model data thus obtained provide the foundation for an AAV-based gene therapy vector for treatment of children affected with LCA8 and/or RP due to mutations in the CRB 1 gene.</p>
<heading id="h0014"><u>2.1. MATERIALS AND METHODS:</u></heading><!-- EPO <DP n="42"> -->
<heading id="h0015"><i>Experimental Animals</i></heading>
<p id="p0095" num="0095"><i>Crb2</i><sup><i>flox</i>/<i>flox</i></sup> mice were generated at the Inventor's facilities. <i>Chx10Cre</i> heterozygote embryos were obtained from a living stock at The Jackson Laboratory (Bar Harbor, ME, USA). Heterozygotes were mated at the Inventors' facilities to produce <i>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>Chx10Cre</i> homozygous mice and isogenic <i>Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> control offspring (both heterozygous for <i>Chx10Cre</i>)<i>.</i> All mice were bred and maintained in a centralized facility at the Inventors' institution under a 12 hr/12 hr light/dark cycle. Food and water were available <i>ad libitum.</i> All animal studies were approved by the local Institutional Animal Care and Use Committee and conducted in accordance with the ARVO Statement for the Use of Animals in Ophthalmic and Vision Research and KNAW (Koninklijke Nederlandse Akademie van Wetenschappen) regulations.</p>
<heading id="h0016"><i>Construction of AAV Vectors</i></heading>
<p id="p0096" num="0096">AAV vectors with serotype 6 variant ShH10Y capsid proteins and AAV2 ITR and Rep proteins (AAV2/ShH10Y) were used to deliver human CRB2 (hCRB2) as they have been shown to exhibit robust transduction efficiency and a faster onset of expression in retinal Müller glia cells as well as photoreceptors than other AAV serotypes. The serotype 6 variant ShH10Y AAV capsid was provided by Dr. John Flannery (University of California, Berkeley, CA, USA). AAV serotype 5 was obtained from Plasmid Factory. AAV serotype 9 was obtained from Dr. Joost Verhaagen (Netherlands Institute for Neuroscience). A ubiquitous cytomegalovirus (CMV) promoter was selected to drive expression of hCRB2. The nucleic acid sequence of an illustrative ubiquitous CMV promoter which was used in the studies is shown in SEQ ID NO: 121. The CMV promoter is flanked at the 5' sequence with a BglII restriction site (AGATCT). A synthetic intron (In5) inserted in the <i>CRB2</i> cDNA was used for stable transcript processing of CRB2. The nucleic acid sequence of an illustrative synthetic intron (In5) in the coding sequence of the Crumbs homologue (CRB) gene is shown in SEQ ID NO: 128. The intron was inserted into <i>CRB2</i> cDNA between two adjacent exons with a sequence of exon NNNAG/intron/GNNN exon, where G, A, T, C stands for one of the four nucleotides, and N stands for any of the four nucleotides. A synthetic poly-adenylation (spA) sequence was used for efficient termination of transcription. The nucleic acid<!-- EPO <DP n="43"> --> sequence of an illustrative synthetic polyadenylation region (<nplcit id="ncit0071" npl-type="s"><text>Levitt et al., 1989. Genes Dev. 3(7):1019-25</text></nplcit>) in between the stop codon behind the translated region of the Crumbs homologue (CRB) gene and the 3'flanking inverted terminal repeat which was used is shown in SEQ ID NO: 129. The synthetic polyadenylation site is flanked at the 3'sequence with a BglII restriction site (AGATCT). The nucleic acid sequence of an illustrative 5' untranslated region located in between the CMV promoter and the translated region of the Crumbs homologue (CRB) gene which was used is shown in SEQ ID NO: 130.</p>
<p id="p0097" num="0097">The CMV-hCRB2In5-spA fragment, containing BglII restriction sites at the 5' and 3' ends, with sequence identified in SEQ ID NO: 40 was synthesized by GenScript (Piscataway, NJ, USA). The BglII CMV-hCRB2In5-spA fragment was cloned into pUC57 (Thermo Fisher Scientific, Waltham, MA, USA) containing two inverted terminal repeats (ITRs) of AAV2 flanked by BglII restriction sites (SEQ ID NO: 131 and 132). The resulting AAV-hCRB2 plasmid of 4.9 kb contained the sequence identified in SEQ ID NO: 40 and was sequence verified.</p>
<p id="p0098" num="0098">AAV vectors were packaged and purified by iodixanol gradient ultra-centrifugation according to previously published methods (<nplcit id="ncit0072" npl-type="s"><text>Zolotukhin et al., 1999. Gene Ther. 6(6):973-85</text></nplcit>; <nplcit id="ncit0073" npl-type="s"><text>Hermens et al., 1999. Hum Gene Ther. 10(11):1885-91</text></nplcit>; <nplcit id="ncit0074" npl-type="s"><text>Ehlert et al., 2010. BMC Neurosci. 11:20</text></nplcit>). Viral particles were diluted, washed and concentrated using an Amicon 100 kDa MWCO Ultra-15 device (Millipore, Billerica, MA, USA) in Dulbecco's Balanced Salt Solution (Life Technologies, Bleiswijk, Netherlands) and titered by quantitative real-time PCR (<nplcit id="ncit0075" npl-type="s"><text>Aartsen et al., 2010. PLoS One. 5:e12387</text></nplcit>). Resulting titers were 1.00 × 10<sup>13</sup> viral genomes per mL (vg/mL) for AAV2/ShH10Y-CMV-hCRB2 or AAV2/9-CMV-hCRB2 (AAV2 ITR and Rep proteins; AAV9 capsid proteins) or AAV2/5-CMV-hCRB2 (AAV2 ITR and Rep proteins; AAV5 capsid proteins).</p>
<heading id="h0017"><i>Subretinal Injections</i></heading>
<p id="p0099" num="0099">In a typical experiment, 1 µL of AAV2/ShH10Y-CMV-hCRB2 (1.00 × 10<sup>10</sup> delivered vector genomes) plus a ten-fold lower dose of AAV2/ShH10Y-CMV-GFP-WPRE-pA (1.00 × 10<sup>9</sup> delivered vector genomes) was delivered subretinally at postnatal day 23<!-- EPO <DP n="44"> --> (P23) to the left eye of each <i>Crb2</i><sup><i>flox</i>/</sup><i><sup>flox</sup>Chx10Cre</i> mouse. The contralateral control right eye was injected with 1 µL of AAV2/ShH10Y-CMV-GFP-WPRE-pA (1.00 × 10<sup>10</sup> delivered vector genomes). Subretinal injections were performed as previously described (<nplcit id="ncit0076" npl-type="s"><text>Aartsen et al., 2010. PLoS One. 5:e12387</text></nplcit>). Further analysis was carried out on all animals, not only the ones which received comparable, successful injections (&gt; 60 % retinal detachment and minimal complications). It is well established that the area of retinal detachment corresponds to the area of viral transduction (<nplcit id="ncit0077" npl-type="s"><text>Cideciyan et al., 2008. Proc Natl Acad Sci U S A. 105(39):15112-7</text></nplcit>; <nplcit id="ncit0078" npl-type="s"><text>Timmers et al., 2001. Mol Vis. 7:131-7</text></nplcit>).</p>
<heading id="h0018"><i>Electroretinographic Analysis</i></heading>
<p id="p0100" num="0100">In a representative experiment, electroretinograms (ERGs) of treated <i>Crb2</i> cKO (n = 3) and isogenic controls (n = 2) were recorded using a PC-based control and recording unit (Toennies Multiliner Vision; Jaeger/Toennies, Hochberg, Germany) according to methods previously described with minor modifications (<nplcit id="ncit0079" npl-type="s"><text>Haire et al., 2006. Invest Ophthalmol Vis Sci. 47(9):3745-53</text></nplcit>). Initial ERG measurements were recorded at 4 weeks' postinjection, and each subsequent 2 weeks thereafter, until 10 weeks postinjection (the latest time point evaluated in the study). Age matched isogenic controls were recorded alongside treated animals at every time point. Mice were dark-adapted overnight (more than 12 hours) and anesthetized with a mixture of 100 mg/kg ketamine, 20 mg/kg xylazine and saline in a 1:1:5 ratio, respectively. Pupils were dilated with 1 % tropicamide and 2.5 % phenylephrine hydrochloride. A heated circulating water bath was used to maintain the body temperature at 38°C. Hydroxypropyl methylcellulose 2.5 % was applied to each eye to prevent corneal dehydration. Full-field ERGs were recorded using custom, gold wire loop corneal electrodes. Reference and ground electrodes were placed subcutaneously between the eyes and in the tail, respectively. Scotopic rod recordings were elicited with a series of white flashes of seven increasing intensities (0.1 mcds/m<sup>2</sup> to 1.5 cds/m<sup>2</sup>). Interstimulus intervals for low intensity stimuli were 1.1 second. At the three highest intensities (100 mcds/m<sup>2</sup>, 1 cds/m<sup>2</sup> and 5 cds/m<sup>2</sup>), interstimulus intervals were 2.5, 5.0 and 20.0 seconds, respectively. Ten responses were recorded and averaged at each intensity. Mice were then light adapted to a 100 cds/m<sup>2</sup> white background for 2 min. Photopic cone responses were elicited with a series of five<!-- EPO <DP n="45"> --> increasing light intensities (100 mcds/m<sup>2</sup> to 12 cds/m<sup>2</sup>). Fifty responses were recorded and averaged at each intensity. All stimuli were presented in the presence of the 100 cds/m<sup>2</sup> background. B-wave amplitudes were defined as the difference between the a-wave troughs to the positive peaks of each waveform.</p>
<p id="p0101" num="0101">Alternatively, ERGs recordings were elicited with a series of light pulses of increasing intensities (2.7 cds/m<sup>2</sup> to 25 cds/m<sup>2</sup>, logarithmically spread over 10 levels. Pulse lengths ranged from 0.5 to 5 msec. Between pulses there was a delay of approximately 2 seconds (0.5 Hz). Thirty responses were recorded and averaged at each intensity. No extra delay was introduced for the transition from one intensity level to the next. Between pulses, no background lighting was present. The a-wave trough was defined as the minimum response between 0 and 30 milliseconds after stimulus onset. The b-wave peak was defined as the maximum response between 15 and 100 milliseconds after stimulus onset. The a-wave amplitude was defined as the difference between the baseline and the a-wave trough, whereas the b-wave amplitude was defined as the difference between the b-wave peak and the a-wave trough.</p>
<p id="p0102" num="0102">Photopic b-wave maximum amplitudes (those generated at 12 cds/m<sup>2</sup>) of all CMV-hCRB2- treated (n = 3) <i>Crb2</i> cKO (both treated and untreated eyes) and isogenic control mice were averaged and used to generate standard errors. These calculations were made at every time point (4 weeks' to 10 weeks' post-injection). This data was imported into Sigma Plot for final graphical presentation. The paired <i>t-test</i> was used to calculate P-values between treated and untreated eyes within each group over time (4 weeks postinjection vs. 10 weeks post-injection). Significant difference was defined as a <i>P-</i>value &lt; 0.05.</p>
<heading id="h0019"><i>Tissue Preparation</i></heading>
<p id="p0103" num="0103">Ten weeks post-injection, P23-treated <i>Crb2</i> cKO mice and age matched isogenic controls were dark adapted for 2 hr. Immediately following dark adaptation, mice were sacrificed under dim red light (&gt; 650 nm). The limbus of injected and un-injected eyes was marked with a hot needle at the 12:00 position, facilitating orientation. Enucleation was performed under dim red light and eyes were placed immediately in 4 %<!-- EPO <DP n="46"> --> paraformaldehyde. Eyes that were to be used for cryo sectioning were prepared according to previously described methods (<nplcit id="ncit0080" npl-type="s"><text>Haire et al., 2006. Invest Ophthalmol Vis Sci. 47(9):3745-53</text></nplcit>). Briefly, corneas were removed from each eye, leaving the lens inside the remaining eye cup. A small "V" shaped cut was made into the sclera adjacent to the burned limbus to maintain orientation. After overnight fixation, the lens and vitreous were removed. The remaining retinal RPE-containing eyecup was placed in 30 % sucrose in PBS for at least 1 hr at 4°C. Eyecups were then placed in cryostat compound (Tissue Tek OCT 4583; Sakura Finetek, Inc., Torrance, CA, USA) and snap-frozen in a bath of dry ice/ethanol. Eyes were serially sectioned at 10 µm with a cryostat (Microtome HM550; Walldorf, Germany). Eyes that were to be used for whole mount analysis were prepared according to previously described methods (<nplcit id="ncit0081" npl-type="s"><text>van de Pavert et al., 2007. J Neurosci. 27(3):564-73</text></nplcit>). Orientation was achieved as previously mentioned. After overnight fixation, cornea, lens, vitreous and retinal pigment epithelia were removed from each eye without disturbing the retina. A cut was made in the superior (dorsal) portion of the retina adjacent to the original limbus bum to maintain orientation.</p>
<heading id="h0020"><i>Immunohistochemistry and Microscopy</i></heading>
<p id="p0104" num="0104">Retinal cryosections and whole mounts were washed 3 times in 1X PBS. Following these washes, samples were incubated in 0.5 % Triton X-100<sup>®</sup> for 1 hr in the dark at room temperature. Next, samples were blocked in a solution of 1 % bovine serum albumin (BSA) in PBS for 1 hr at room temperature. Retinal sections were incubated overnight at 37°C with a rabbit polyclonal CRB2 antibody EP13 or SK11 (1:1000 and 1:200, respectively; provided by Dr. Penny Rashbass, University of Sheffield, UK) diluted in 0.3 % Triton X-100<sup>®</sup>/1 % BSA. Following primary incubation, retinal sections and whole mounts were washed 3 times with 1X PBS.</p>
<p id="p0105" num="0105">Retinal sections were incubated for 1 hr at room temperature with IgG secondary antibodies tagged with Cyanine dye Cy5 (Molecular Probes, Eugene, OR, USA) diluted 1:500 in 1X PBS. Following incubation with secondary antibodies, sections and whole mounts were washed with 1X PBS. Retinal sections were counterstained with 4',6'-diamino-2-phenylindole (DAPI) for 5 min at room temperature. After a final rinse with 1X PBS and water, sections were mounted in an aqueous-based medium (DAKO) and<!-- EPO <DP n="47"> --> cover-slipped. Retinal whole mounts were oriented on slides with the superior (dorsal) portion of the retina positioned at the 12:00 position. Samples were mounted in DAKO and cover-slipped.</p>
<p id="p0106" num="0106">Retinal sections were analyzed with confocal microscopy (Leica TCS SP5 AOBS Spectral Confocal Microscope equipped with LCS Version 2.61, Build 1537 software, (Bannockburn, IL, USA). All images were taken with identical exposure settings at either 20x or 63x magnification. Excitation wavelengths used for DAPI and CRB2 stains were 405 nm and 650 nm, respectively. Emission spectra were 440-470 nm and 670 nm, respectively. Retinal whole mounts were analyzed with a widefield fluorescent microscope (Axioplan 2) (Zeiss, Thornwood, NY, USA) equipped with a QImaging Retiga 4000R Camera and QImaging QCapture Pro software (QImaging, Inc., Surrey, BC, Canada). Quadrants of each whole mount were imaged at 5x under identical exposure settings and then merged together in Photoshop<sup>®</sup> (Version 7.0) (Adobe, San Jose, CA, USA).</p>
<heading id="h0021"><u>2.2. RESULTS</u></heading>
<heading id="h0022"><i>Photoreceptor Function (ERG) was restored in AAV-Treated Crb2 cKO Mice:</i></heading>
<p id="p0107" num="0107">It was previously reported that rod and cone responses in the <i>Crb2</i> cKO mouse are significantly decreased at 1 month of age and progressively decreased at 3 months of age (<nplcit id="ncit0082" npl-type="s"><text>Alves et al., 2013. Hum Mol Genet. 22(1):35-50</text></nplcit>). Here, the inventors have shown that P23-treatment of this mouse with an AAV vector carrying the human CRB2 gene (SEQ ID NO:40) under the control of a ubiquitous (CMV) promoter led to substantial restoration of rod photoreceptor function as measured by electroretinography (ERG). Representative rod traces from CMV-hCRB2-treated and control CMV-GFP treated eyes showed that rod function in CMV-hCRB2 treated eyes was restored to approximately 40 % of normal at 10 weeks post-injection. Similar to previous reports, rod responses in contralateral, untreated eyes were about 20% of normal by this time point. Importantly, restoration of rod photoreceptor a-wave and b-wave function remained stable at 3 months (the latest time point evaluated in this study (see <figref idref="f0011 f0012"><b>Fig. 10</b></figref>). Rod retinal function (ERG) is partially preserved in the <i>Crb2</i> cKO mouse. Studies have shown that even very small<!-- EPO <DP n="48"> --> ERG amplitudes translate into robust visual behavior (<nplcit id="ncit0083" npl-type="s"><text>Williams et al., 2006. PLoS Med. 3(6):e201</text></nplcit>). In fact, LCA2 patients who received AAV-RPE65 therapy were found to exhibit behavioral restoration despite a complete lack of ERG response (<nplcit id="ncit0084" npl-type="s"><text>Maguire et al., 2008. N Engl J Med. 358(21):2240-8</text></nplcit>). So, the rescue of loss of retinal function in <i>Crb2</i> cKO retinas by the AAV-hCRB2 vector is very promising for future gene therapy studies. This is the first example of rescue of loss of retinal function in mammalians lacking Crumbs homologue (CRB) function using a candidate clinical gene therapy vector.</p>
<p id="p0108" num="0108">Analysis was carried out on all animals, not only the ones which received comparable, successful injections (&gt; 60 % retinal detachment and minimal complications). It is well established that the area of retinal detachment corresponds to the area of viral transduction (<nplcit id="ncit0085" npl-type="s"><text>Cideciyan et al., 2008. Proc Natl Acad Sci USA. 105(39):15112-7</text></nplcit>; <nplcit id="ncit0086" npl-type="s"><text>Timmers et al., 2001. Mol Vis. 7:131-7</text></nplcit>). Mice with unsuccessful subretinal injections showed lack or limited expression of hCRB2 and GFP in combination with lack of rescue of scotopic b-wave or a-wave ERG function (see <figref idref="f0011 f0012"><b>Fig. 10</b></figref>). Due to the inter-mouse variability in untreated <i>Crb2</i> cKO rod responses (60-80 % of WT by 3 months of age), statistical comparison of average rod responses of treated vs. untreated eyes is problematic. However, within an animal, rod ERG amplitudes are nearly equal between partner eyes, therefore we calculated the average intra-mouse rod a- and b-wave amplitude ratios for treated versus untreated eyes and then plotted these ratios over time.</p>
<heading id="h0023"><i>The Ubiquitous CMV Promoter Drives hCRB2 Transgene Expression in Müller glia cells and photoreceptors of Crb2 cKO Mice:</i></heading>
<p id="p0109" num="0109">CRB 1-deficiency affects both Müller glia and photoreceptors in LCA8 and RP patients due to mutations in the <i>CRB1</i> gene. The ubiquitous CMV promoter was therefore chosen for this study as a means of targeting both cell types. The AAV6 variant ShH10Y capsid was chosen because it infects upon subretinal injection efficiently <i>in vivo</i> mouse Müller glia and photoreceptors (and infects <i>e.g., in vitro</i> human retinal Müller glia cells, see <figref idref="f0013"><b>Fig. 12</b></figref>). Immunostaining of <i>Crb2</i> cKO retinas 10 weeks posttreatment with AAV-CMV-hCRB2 revealed that this promoter drove robust hCRB2 expression in inner segments of photoreceptors and apical villi of Müller glia cells. Typically, a retinal cross section from an eye injected with this therapeutic vector shows intense hCRB2 staining at the outer<!-- EPO <DP n="49"> --> limiting membrane whereas the contralateral, mock GFP treated eye from the same mouse lacks any hCRB2 expression. Levels of CMV-mediated hCRB2 expression approached that seen in isogenic control eyes. hCRB2 expression in CMV-hCRB2-treated neural retina was restricted to the outer limiting membrane. hCRB2 expression was occasionally found in the retinal pigment epithelium. In normal mammalian retinas, the retinal pigment epithelium also expresses Crumbs homologue (CRB) complex members such as PALS 1 (<nplcit id="ncit0087" npl-type="s"><text>Park et al., 2011. J Neurosci. 31(47):17230-41</text></nplcit>), albeit at lower levels than at the outer limiting membrane (<nplcit id="ncit0088" npl-type="s"><text>Pellissier et al., 2014. Hum Mol Genet. 23(14):3759-71</text></nplcit>). Overexpression of hCRB2 in the wild-type RPE cells in the <i>Crb2</i> cKO did not result in noticeable altered morphology or function of retinal pigment epithelium. Notably however, the CMV promoter construct did not drive therapeutic hCRB2 expression outside the photoreceptor cells, Müller glia cells and retinal pigment epithelium. This lack of off target expression is relevant to the development of future clinical applications. If required, overexpression in retinal pigment epithelium can be decreased by the use of micro-RNA target sites (miRT's) specific for miRNAs expressed in retinal pigment epithelium cells (<nplcit id="ncit0089" npl-type="s"><text>Karali et al., 2011. PLoS One. 6(7):e22166</text></nplcit>).</p>
<p id="p0110" num="0110">It is important to note that while CRB 1-deficiency in humans causes LCA8 and progressive RP very well detectable by ERG, CRB 1-deficiency in mice causes late-onset retinal degeneration and degeneration limited to one quadrant of the retina and not detectable by ERG. Our immuno-electron microscopy data showed that in mice CRB 1 is restricted to the "outer limiting membrane" of Müller glia cells, whereas in humans CRB 1 is localized to the "outer limiting membrane" of Müller glia cells and photoreceptors. Our immuno-electron microscopy data showed that in mice CRB2 is localized to the "outer limiting membrane" of Müller glia cells and photoreceptors, whereas in humans CRB2 is restricted to the "outer limiting membrane" of Müller glia cells. Our analysis of mice lacking CRB1, mice lacking CRB2, mice lacking CRB 1 with reduced levels of CRB2, mice lacking CRB2 with reduced levels of CRB 1, and mice lacking both CRB 1 and CRB2 suggest very similar functions for CRB 1 and CRB2. Similarly, the functions of Crumbs homologue (CRB) proteins are exchangeable <i>e.g.,</i> the human CRB 1 protein can rescue partially the phenotype in fruit flies lacking Crumbs (Crb) protein (<nplcit id="ncit0090" npl-type="s"><text>den Hollander et al., 2001. Hum Mol Genet. 10(24):2767-73</text></nplcit>), and the zebrafish CRB2B protein can rescue the<!-- EPO <DP n="50"> --> phenotype in zebrafish lacking CRB2A protein (<nplcit id="ncit0091" npl-type="s"><text>Omori &amp; Malicki, 2006. Curr Biol. 16(10):945-57</text></nplcit>).</p>
<heading id="h0024"><u>2.3. DISCUSSION</u></heading>
<p id="p0111" num="0111">Prior to Examples 1 and 2, several plasmids were transfected as naked plasmid DNA in cell lines (<i>e.g</i>., HEK293, MDCKII and ARPE19 cell lines) as described in section 3.1 MATERIALS AND METHODS. It was apparent that the transfected cell lines with short or full length <i>CRB1</i> cDNA consistently resulted in low CRB1 expression. Also, cell lines <i>(e.g.,</i> HEK293 and MDCKII cell lines) that stably express full length <i>CRB1</i> cDNA (SEQ ID NO: 1) or short <i>CRB1</i> cDNA (CRB1 lacking the entire extracellular domain; SEQ ID NO: 3) had a low expression. In contrast, cell lines expressing <i>CRB2</i> cDNA resulted in high expression of CRB2 protein. These observations indicate that cells handle increased expression of CRB2 better than increased expression of CRB 1.</p>
<p id="p0112" num="0112">Experiments have been carried out in several mouse models.</p>
<p id="p0113" num="0113">Short human CRB 1 was overexpressed in retinas lacking CRB1 protein expression and with reduced levels of CRB2 protein. Thus, these mice still have functional native CRB2 protein in Müller glia cells and photoreceptor cells since CRB2 in mouse retina is present in both cell types. It is conceivable that this remaining mouse CRB2 protein is capable of taking over the function of the CRB1 protein. These mice on 50 % C57BL/6J and 50 % 129/Ola genetic background were less suitable to test rescuing of the phenotype in the retina. Control mice and mutant mice are significantly different in retina activity as measured using electroretinography. However, there is quite some variation in experimental animals and as a consequence the confidence intervals are close to one another. As far as rescuing the phenotype is concerned, the mouse model is still suboptimal and could be further optimized by backcrossing to 99.9 % C57BL/6J. Recently, trials were initiated in mice (on 75 % C57BL/6J and 25 % 129/Ola genetic background) lacking CRB 1 and having reduced levels of CRB2 using human CRB2 in AAV9 conform to the experimental setting as outlined above. As with the described AAV2/ShH10Y-CMV-CRB2 experiments, ERG rescue results were obtained using AAV2/9-CMV-CRB2 (1.00 × 10<sup>10</sup> delivered vector genomes) viral particles subretinally<!-- EPO <DP n="51"> --> injected into P14 <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/+</sup><i>Chx10Cre</i> retinas (on 75 % C57BL/6J and 25 % 129/Ola genetic background) that were analyzed at 4 months of age.</p>
<p id="p0114" num="0114">Human CRB2 was overexpressed in retinas of mice lacking CRB2. These mice still have functional CRB1 protein in Müller glia cells, but lack functional CRB protein in photoreceptor cells. This situation most closely resembles the situation as seen in patients suffering from RP12 or LCA8. In these patients (lacking functional CRB1), CRB2 is present in Müller glia cells, but not in photoreceptor cells (see also <figref idref="f0001"><b>Figs. 1</b></figref> <b>and</b> <figref idref="f0002"><b>2</b></figref>). Retinas of Crb2 conditional knock-out mice show a big difference in retina activity at 1 and 3 months of age. The retinas of <i>Crb2</i> mutant mice are rescued phenotypically, and the confidence intervals are separated and well interpretable.</p>
<p id="p0115" num="0115">Human CRB2 was overexpressed in retinas of mice lacking CRB 1 and with reduced levels of CRB2 (<i>Crbl</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/+</sup><i>Chx10Cre</i>)<i>.</i> These mice lack CRB1 in the retina, but still have reduced levels of functional CRB2 protein in Müller glia cells and photoreceptor cells. This situation resembles mice lacking CRB 1 (on a genetic background with reduced levels of CRB2). Retinas of control <i>Crb2</i><sup><i>F</i>/+</sup> conditional knock-out mice on 75 % C57BL/6J and 25 % 129/Ola genetic background do not show loss of retina activity compared to wild-type mice. Retinas of <i>Crb1 Crb2</i><sup><i>F</i>/+</sup> conditional knock-out mice on 75 % C57BL/6J and 25 % 129/Ola genetic background show a big difference in retina activity at 3 months of age. The retinas of <i>Crb1 Crb2</i><sup><i>F</i>/+</sup> mutant mice are rescued phenotypically, and the confidence intervals are separated and well interpretable. These experiments show that CRB2 can rescue a CRB 1 phenotype in a mammalian disease model.</p>
<p id="p0116" num="0116">The present Example indicates that the phenotype, measured as retina activity using electroretinography, in the eyes that show expression of recombinant human CRB2 is rescued. In absence of expression of recombinant human CRB2 the phenotype is not rescued.</p>
<p id="p0117" num="0117">Experiments have been performed using several promoters. We have used the following promoter-gene constructs:
<ul id="ul0002" list-style="dash" compact="compact">
<li>full length CMV-CRB2 (in rescue experiments in <i>Crb2</i> cKO and <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO mice)<!-- EPO <DP n="52"> --></li>
<li>full length CMV-sCRB 1 (in rescue experiments in <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO mice)</li>
<li>full length CMV-GFP (in expression experiments)</li>
<li>truncated CMV-GFP (in expression experiments)</li>
<li>truncated CMV-CRB1 (in rescue and toxicity experiments in <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO mice)</li>
<li>hGRK1-CRB1 (in expression experiments in <i>Crb1</i> KO mice; the rescue and toxicity experiments will follow)</li>
<li>hRHO-CRB 1 (in expression experiments in <i>Crb2</i> KO mice; the rescue and toxicity experiments will follow)</li>
<li>hGRK1-CRB2 (in expression experiments in <i>Crb2</i> cKO mice; the rescue experiments will follow)</li>
<li>hRHO-CRB2 (in expression experiments in <i>Crb2</i> cKO mice; the rescue experiments will follow)</li>
<li>RLBP1-GFP (in expression experiments)</li>
</ul></p>
<heading id="h0025"><u>2.4. CONCLUSION</u></heading>
<p id="p0118" num="0118">Long-term therapy is achievable in a mammalian model of Crumbs homologue (CRB) deficiency, the <i>Crb2</i> cKO mouse, the <i>Crb1Crb2</i><sup><i>F</i>/+</sup> cKO mouse, using the rAAV vector CRB2 constructs disclosed herein. Importantly, these results could not be obtained by the use of short-CRB 1 or full-length CRB 1 constructs because of toxicity, whereas the results could be obtained with the non-toxic CRB2 constructs. Importantly, tools are present to test CRB2 gene therapy vectors in the mice lacking CRB1 and/or CRB2 which mimic different degrees of the LCA8 and RP due to loss of CRB1 phenotype. These results provide evidence for the successful use of rAAV-based CRB2 gene therapy vectors for treatment of retinal dystrophies, and LCA8 and RP due to loss of CRB1 in particular. Experiments have also been performed using AAV2/9-CMV-hCRB2-spA in rescue experiments, and AAV2/5-CMV-hRHO-CRB2-spA and AAV2/5-hGRK1-CRB2-spA in expression experiments, and also using the AAV2/9 vector, or hRHO or hGRK1 promoters, no toxicity was detected when overexpressing human CRB2, whereas overexpression of human short CRB 1 in AAV5 or in AAV9 vectors was toxic.<!-- EPO <DP n="53"> --></p>
<heading id="h0026"><b><u>EXAMPLE 3- TOXICITY TEST OF CRB PROTEINS IN THE ARPE-19 CELL LINE BY CELL COUNTING AND WESTERN BLOTTING</u></b></heading>
<heading id="h0027"><u>3.1. MATERIALS AND METHODS</u></heading>
<p id="p0119" num="0119">Toxicity of CRB proteins can be tested using human-derived retinal pigment epithelial cells according to the following Example.</p>
<p id="p0120" num="0120">ARPE19 cells (ATCC CRL-2302) are transfected with one of the different (modified) <i>CRB</i> constructs (<i>e.g</i>., CRB 1, sCRB 1, CRB2 isoform 1, CRB2 isoform 2, CRB2 isoform 3, CRB3, etc.) together with a control <i>GFP</i> construct (<nplcit id="ncit0092" npl-type="s"><text>Aartsen et al., 2010. PLoS One. 5:e12387</text></nplcit>; UniProtKB/Swiss-Prot sequence P42212) using the calcium phosphate method (described <i>e.g.,</i> in <nplcit id="ncit0093" npl-type="b"><text>Sambrook &amp; Russell (2001). Molecular cloning: a laboratory manual (3rd ed.), Cold Spring Harbor, NY: Cold Spring Harbor Laboratory</text></nplcit>). As a control, a CRB2 construct is used (CRB2 sequence: SEQ ID NO: 40). The CRB constructs are used in equimolar amounts and a total amount of 20 µg of DNA is added per petridish. CRB constructs are made as described in Example 2.1. Briefly, CRB constructs are made by chemical synthesis and subcloned into pUC57. These constructs comprise AAV2 ITRs (SEQ ID NO: 131 and 132), CMV promoter (SEQ ID NO: 121), CRB cDNA to be tested (<i>e.g</i>., SEQ ID NO: 40 or other CRB sequence, Intron 5 (SEQ ID NO: 128), and synthetic pA (SEQ ID NO: 130).</p>
<p id="p0121" num="0121">The GFP construct is used as internal transfection control in a fixed amount. For example, 18 µg of CRB construct plus 2 µg of GFP construct is used. In this way, a series of equimolar plasmid concentrations can be tested while adding the same amount of DNA, such as for example 2, 4, 8 or 16 µg of CRB construct, plus 18, 16, 12 or 4 µg of GFP construct, respectively.</p>
<p id="p0122" num="0122">On the day before transfection, ARPE19 cells are plated in duplicate at 30% of confluence in a 10 cm petridish in DMEM supplemented with 10% Fetal Bovine Serine and penicillin/streptomycin. After refreshing the medium 2 hours before transfection, the transfection mix is prepared with 20 µg of DNA in 500 µL of 0.25 M CaCl<sub>2</sub> and TE (10 mM Tris, 1 mM EDTA pH 8) buffer per dish. While constantly vortexing, 500 µL of 2X HBS (281 mM NaCl, 100 mM Hepes, 1.5 mM Na<sub>2</sub>HPO<sub>4</sub>, pH 7.12) are added drop<!-- EPO <DP n="54"> --> wise to the transfection mixture and the complete mix is directly added to the cells for overnight incubation. The medium is refreshed in the following morning. Two days later (<i>i.e</i>., 72 h after transfection), the attached and floating cells are harvested separately (one duplicate) and together (the second duplicate) and after centrifugation, resuspended in 1 mL of Phosphate Buffer Saline (137 mM NaCl, 2.7 mM KCl, 10 mM Na<sub>2</sub>HPO<sub>4</sub> and 1.76 mM KH<sub>2</sub>PO<sub>4</sub>). Subsequently, cells are tested for:
<ul id="ul0003" list-style="dash">
<li>cell number and viability with a Luna Automated Cell Counter (Logos Biosystems, Inc.; Annandale, USA). The counter determines the number of cells and via Trypan Blue staining discriminates between viable and non-viable cells. Trypan Blue staining was performed using the Standard protocol by Life Technologies as outlined below.</li>
<li>protein expression by Western Blotting. Proteins from the cell lysates are separated by SDS-page electrophoresis. After transfer to nitrocellulose membrane, the nitrocellulose membrane is immunostained for CRB, GFP and Actin proteins and analyzed by Odyssey Infrared Imaging System (LI-COR; Westburg BV, Leusden, the Netherlands). This method is described in the manual for Western Blot Analysis developed for Aerius, and Odyssey Family of Imagers by Li-Cor, published 2003, revised January 2012. As primary antibodies anti-CRB 1 (AK2, AK5 and AK7; <nplcit id="ncit0094" npl-type="s"><text>van de Pavert et al., 2004. J Cell Sci. 117(Pt 18):4169-77</text></nplcit>) and anti-CRB2 (SK II from Pen Rashbash, described in <nplcit id="ncit0095" npl-type="s"><text>van de Pavert et al., 2004. J Cell Sci. 117(Pt 18):4169-77</text></nplcit>) and anti-GFP (Becton Dickinson and Company) were used. Secondary antibodies (IRDye 800-CW goat anti chicken, mouse or rabbit, or donkey anti goat) were from Li-Cor.</li>
</ul></p>
<heading id="h0028"><i>Trypan blue staining using the Standard protocol by Life Technologies:</i></heading>
<p id="p0123" num="0123">The following procedure will enable you to accurately determine the cell viability. Cell viability is calculated as the number of viable cells divided by the total number of cells within the grids on the hemacytometer. If cells take up trypan blue, they are considered non-viable.
<ol id="ol0004" compact="compact" ol-style="">
<li>1. Determine the cell density of your cell line suspension using a hemacytometer.<!-- EPO <DP n="55"> --></li>
<li>2. Prepare a 0.4% solution of trypan blue in buffered isotonic salt solution, pH 7.2 to 7.3 (<i>i.e.</i>, phosphate-buffered saline).</li>
<li>3. Add 0.1 mL of trypan blue stock solution to 1 mL of cells.</li>
<li>4. Load a hemacytometer and examine immediately under a microscope at low magnification.</li>
<li>5. Count the number of blue staining cells and the number of total cells. <maths id="math0001" num=""><math display="block"><mi>%</mi><mspace width="1ex"/><mi>viable</mi><mspace width="1ex"/><mi>cells</mi><mo>=</mo><mfenced open="[" close="]" separators=""><mn>1.00</mn><mo>−</mo><mfenced separators=""><mi>Number</mi><mspace width="1ex"/><mi>of</mi><mspace width="1ex"/><mi>blue</mi><mspace width="1ex"/><mi>cells</mi><mo>÷</mo><mi>Number</mi><mspace width="1ex"/><mi>of</mi><mspace width="1ex"/><mi>total</mi><mspace width="1ex"/><mi>cells</mi></mfenced></mfenced><mo>×</mo><mn>100</mn></math><img id="ib0001" file="imgb0001.tif" wi="135" he="6" img-content="math" img-format="tif"/></maths></li>
</ol></p>
<p id="p0124" num="0124">To calculate the number of viable cells per mL of culture, use the following formula: <maths id="math0002" num=""><math display="block"><mi>Number</mi><mspace width="1ex"/><mi>of</mi><mspace width="1ex"/><mi>viable</mi><mspace width="1ex"/><mi>cells</mi><mo>×</mo><msup><mi>10</mi><mn>4</mn></msup><mo>×</mo><mn>1.1</mn><mo>=</mo><mi>cells</mi><mo>/</mo><mi>mL</mi><mspace width="1ex"/><mi>culture</mi></math><img id="ib0002" file="imgb0002.tif" wi="94" he="6" img-content="math" img-format="tif"/></maths> (Remember to correct for the dilution factor).</p>
<heading id="h0029"><u>3.2. RESULTS</u></heading>
<p id="p0125" num="0125">Transfection of full length CRB 1 in ARPE-19 cells lead to high number of detached/dead cells and resulted in less than 20% viable CRB1 transfected cells. Transfection of CRB2 in ARPE-19 cells resulted in more than 95% viable transfected cells. This indicates that full length CRB 1 is toxic and/or inhibits cell growth. The amount of CRB 1 expressed in the attached cells is almost undetectable by Western Blot in contrast to GFP in ARPE-19 or CRB 1 in HEK293T cells (<figref idref="f0013"><b>Fig. 13</b></figref>). Furthermore, even overloaded three times, the reference protein level (Actin) in CRB1-transfected ARPE-19 is still lower than GFP-transfected ARPE-19. This demonstrates that full length CRB 1 is toxic and/or inhibits cell growth.</p>
<p id="p0126" num="0126">For further analysing the toxicity effects by full length CRB 1 compared to CRB2, we use the following constructs: AAV-truncatedCMV-CRB1; AAV-hGRK1-CRB1; AAV-hGRK1-sCRB1; AAV-hRHO-sCRB1.</p>
<heading id="h0030"><b><u>EXAMPLE 4: GENE REPLACEMENT THERAPY IN</u> <i><u>Crb1</u></i><sup><u><i>-</i>/</u></sup><i><sup><u>-</u></sup><u>Crb2</u></i><sup><u><i>flox</i>/+</u></sup><u><i>Chx10Cre</i> AND</u> <i><u>Crb2</u></i><sup><u><i>flox</i>/</u></sup><i><sup><u>flox</u></sup></i><u><i>Chx10Cre</i> MICE USING AAV2/9-CMV-CRB2-In5</u></b></heading>
<p id="p0127" num="0127">The <i>Crb1Crb2</i><sup><i>ƒlox</i>/+</sup> conditional knock-out mouse lacking CRB 1 in all retinal cells and with reduced levels of CRB2 in all retinal cells except the retinal pigment epithelium<!-- EPO <DP n="56"> --> (<i>e.g</i>., the <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> on 75% C57BL/6J and 25% 129/Ola genetic background) and <i>Crb2</i> cKO mice (99.9% C57BL/6J background) were used to evaluate gene replacement therapy using AAV2/9-CMV-CRB2-In5. The <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup> Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> mice on 75% C57BL/6J and 25% 129/Ola genetic background exhibit progressive retinal degeneration and scotopic (rod-mediated) and photopic (cone-mediated) loss of retina function as measured by ERG from 3 to 6 months of age (<nplcit id="ncit0096" npl-type="s"><text>Pellissier et al., 2014. Hum Mol Genet. 23(14):3759-71</text></nplcit>). The mouse is blind at 12-18 months of age.</p>
<p id="p0128" num="0128">AAV-mediated transfer of CRB2 using AAV2/9-CMV-hCRB2-In5 to <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO retina restored vision to these animals as evidenced by ERG. AAV-mediated transfer of CRB2 to the postnatal <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO retina expressed CRB2 in photoreceptors and Müller glia cells and caused preservation of retinal structure at the time of expression of CRB2.</p>
<p id="p0129" num="0129">Subretinal AAV-mediated transfer of CRB2 using 1 µL of 2 × 10<sup>10</sup> genome copies of AAV9 viral particles containing 4.9 kb AAV2-CMV-hCRB2-In5 to <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO retina or Crb2 cKO retina restored vision to these animals as evidenced by ERG, <figref idref="f0014 f0015 f0016 f0017"><b>Fig. 14</b></figref> (<b>a-c</b>, <b>g-h</b>). Subretinal AAV9-mediated transfer of CRB2 to the postnatal <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO retina or Crb2 cKO retina expressed CRB2 in photoreceptors and Müller glia cells and caused preservation of retinal structure at the time of expression of CRB2.</p>
<p id="p0130" num="0130">These experiments showed the feasibility of preserving retinal structure after a single dose of AAV2/9-CMV-hCRB2-In5 (in short AAV-CRB2) even in severely degenerating <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO or Crb2 cKO retinas. These data demonstrate that loss of CRB1 in the <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>ƒlox</i>/+</sup><i>Chx10Cre</i> retinas can be compensated by rescue using AAV-CRB2. In other words, these data demonstrate that elevating levels of CRB2 by using AAV-CRB2 in the <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>ƒlox</i>/+</sup><i>Chx10Cre</i> retinas can rescue the degeneration phenotype in retinas lacking CRB 1 and having reduced levels of CRB2.</p>
<heading id="h0031"><b><u>EXAMPLE 5: LACK OF GENE REPLACEMENT THERAPY IN</u> <i><u>Crb1</u><sup><u>-l-</u></sup> <u>Crb2</u></i><sup><u><i>flox</i>/+</u></sup><u><i>Chx10Cre</i> USING AAV2/9-CMV-CRB1</u></b></heading><!-- EPO <DP n="57"> -->
<p id="p0131" num="0131">Subretinal AAV-mediated transfer of CRB 1 using 1 µL of 10<sup>10</sup> genome copies of AAV9 viral particles containing 4.8 kb AAV2-minimalCMV-hCRB1 expression vector (<i>i.e</i>., hCRB 1 operably linked to the minimalCMV promoter and flanked by AAV2 ITRs, packaged in AAV9 capsid proteins) to <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO retina (99.9% C57BL/6J background) did not restore vision to these animals as evidenced by ERG, <figref idref="f0014 f0015 f0016 f0017"><b>Fig. 14</b></figref> (<b>d-f</b>). As evidenced by immunohistochemistry experiments, subretinal AAV-mediated transfer of CRB 1 to the postnatal <i>Crb1Crb2</i><sup><i>flox</i>/+</sup> cKO retina expressed CRB 1 in photoreceptors and Müller glia cells but did not cause preservation of retinal structure at the time of expression of CRB1 (data not shown). These experiments showed the lack of capacity of wild type CRB1 in preserving retinal structure after a single dose of AAV-CRB1 in severely degenerating <i>Crb1Crb2</i><sup><i>ƒlox</i>/+</sup> cKO retinas. Example 4 showed that wild type CRB2 can work as a gene replacement therapy, whereas Example 5 demonstrated that wild type CRB 1 in the <i>Crbl</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> retinas cannot.</p>
<heading id="h0032"><b><u>EXAMPLE 6- TOXICITY TEST OF CRB PROTEINS IN</u> <i><u>Crb1</u></i><sup><u><i>-</i>/</u></sup><i><sup><u>-</u></sup><u>Crb2</u></i><sup><u><i>flox</i>+</u></sup><u><i>Chx10Cre</i> MICE</u></b></heading>
<p id="p0132" num="0132">Toxicity of CRB proteins can be tested using <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> mice according to the following Example.</p>
<heading id="h0033"><u>6.1. MATERIALS AND METHODS</u></heading>
<p id="p0133" num="0133"><i>Crb</i><sup><i>(-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> mouse retinas are intravitreally injected with a (modified) <i>CRB</i> construct (e.g., CRB1, short CRB 1, CRB2 isoform 1, CRB2 isoform 2, CRB2 isoform 3, CRB3 etc.) in a recombinant AAV expression vector in one eye, whereas the contralateral eye receives a control AAV-GFP construct (<nplcit id="ncit0097" npl-type="s"><text>Aartsen et al., 2010. PLoS One. 5:e12387</text></nplcit>; UniProtKB/Swiss-Prot sequence P42212). The eyes are treated with the vectors using the AAV transduction method (described <i>e.g.,</i> in <nplcit id="ncit0098" npl-type="s"><text>Aartsen et al., 2010. PLoS One. 5:e12387</text></nplcit>). Control animals receive an AAV-CRB2 construct in one eye and the control AAV-GFP construct in the contralateral eye (CRB2 sequence: SEQ ID NO: 40). The AAV-CRB constructs are intravitreally injected into the eyes of <i>Crbl</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>flox</i>/+</sup><i>Chx10Cre</i> mice in equimolar amounts and a total amount of 1 µL of 5 × 10<sup>9</sup> to 10<sup>10</sup> genome copies of AAV2/ShH10Y-(CMV or minimalCMV)-CRB and in the contralateral control eye with<!-- EPO <DP n="58"> --> the same amount of AAV2/ShH10Y-(CMV or minimalCMV)-GFP. AAV-CRB constructs are made as described in Example 2.1. Briefly, CRB constructs are made by chemical synthesis and subcloned into pUC57. These constructs comprise AAV2 ITRs (SEQ ID NO: 131 and 132), CMV promoter (SEQ ID NO: 121) or minimal CMV promoter, CRB cDNA to be tested (e.g., SEQ ID NO: 40 or other CRB sequence, synthetic pA (SEQ ID NO: 130) and an optional Intron 5 (SEQ ID NO: 128). The GFP construct is used as internal transduction control in a fixed amount. Plasmids are packaged in AAV serotype ShH10Y capsids. Intravitreal ShH10Y-mediated transfer of genes to the mouse retina expressed proteins in Müller glia cells and other inner retinal cell types (<nplcit id="ncit0099" npl-type="s"><text>Pellissier et al., 2014. Mol Ther Methods Clin Dev. 1:14009</text></nplcit>) as well as the retinal ciliary body.</p>
<p id="p0134" num="0134">Three to seven <i>Crb1</i><sup><i>-</i>/</sup><i><sup>-</sup>Crb2</i><sup><i>F</i>/+</sup><i>Chx10Cre</i><sup><i>Tg</i>/+</sup> (<i>Crb1Crb2</i><sup><i>F</i>/+</sup> cKO) are injected at 2 weeks of age intravitreally with 1 µL of 5 × 10<sup>9</sup> to 10<sup>10</sup> genome copies of CRB or control GFP viral particles. <i>In vivo</i> retinal function is to be analyzed at 3 to 5 months of age by electroretinography under scotopic (dark-adapted overnight) or photopic (light-adapted with a background illumination of 30 cd/m2 starting 10 minutes before recording) conditions. Mice are anaesthetized using ketamine (66.7 mg/kg body weight) and xylazine (11.7 mg/kg body weight). The pupils are dilated and single royal blue-flash stimuli range from -3 to 1.5 log cd s/m<sup>2</sup>. Twenty responses are averaged with inter-stimulus intervals of 2 s. A-wave responses revealed direct photoreceptor functions (rods and cones under scotopic and only from cones under photopic conditions) and B-waves revealed the retinal activities. A representative experiment is shown in <figref idref="f0018 f0019 f0020"><b>Fig. 15</b></figref>.</p>
<p id="p0135" num="0135">Potential toxicity (represented by a decreased retinal activity as determined by ERG) of CRB proteins is measured in comparison to GFP contralateral eyes. Significant reduction of the ERG average responses will be considered as toxicity. An example is shown in <figref idref="f0018 f0019 f0020"><b>Fig. 15</b></figref>, CRB1 protein showed signs of toxicity whereas CRB2 does not.</p>
<p id="p0136" num="0136">Retinal expression of CRB proteins upon intravitreal transduction in <i>Crb1Crb2</i><sup><i>F</i>/+</sup> cKO or <i>Crb2</i> cKO eyes is examined by standard immunohistochemistry using antibodies against the respective CRB proteins (e.g., anti-CRB2 or anti-CRB1 or anti-CRB3 as in <nplcit id="ncit0100" npl-type="s"><text>van de Pavert et al., 2004. J Cell Sci. 117(Pt 18):4169-77</text></nplcit>).<!-- EPO <DP n="59"> --></p>
<heading id="h0034"><u>6.2 RESULTS</u></heading>
<p id="p0137" num="0137">Intravitreal transduction of full length CRB 1 into <i>Crb1Crb2</i><sup><i>F</i>/+</sup> cKO eyes lead to a significant reduced b-wave and a-wave in electroretinograms. Similar experiments using full length CRB2 do not show decreases in b-waves of a-waves. This indicates that full length CRB 1 is toxic (reduces the a- and/or b-waves in electroretinograms) to the <i>Crb1Crb2</i><sup><i>F</i>/+</sup> cKO retina when applied intravitreally using 1 µL of 5 × 10<sup>9</sup> to 10<sup>10</sup> genome copies of capsid ShH10Y particles, whereas CRB2 is not toxic.</p>
</description>
<claims id="claims01" lang="en"><!-- EPO <DP n="60"> -->
<claim id="c-en-01-0001" num="0001">
<claim-text>A gene therapy vector for use in treatment or prophylaxis of a retinal disorder due to mutations in <i>CRB1</i> gene in a human subject, wherein the gene therapy vector comprises a nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein.</claim-text></claim>
<claim id="c-en-01-0002" num="0002">
<claim-text>The gene therapy vector for use according to claim <b>1</b>, wherein the retinal disorder is Leber's congenital amaurosis or retinitis pigmentosa, preferably LCA8 or RP12.</claim-text></claim>
<claim id="c-en-01-0003" num="0003">
<claim-text>The gene therapy vector for use according to any one of the preceding claims, wherein the CRB2 protein is a eumetazoan CRB2 protein, preferably a CRB2 protein of human, non-human primate, murine, feline, canine, porcine, ovine, bovine, equine, caprine, or lupine origin, more preferably the CRB2 protein is a human CRB2 protein.</claim-text></claim>
<claim id="c-en-01-0004" num="0004">
<claim-text>The gene therapy vector for use according to any one of the preceding claims, wherein the gene therapy vector is a recombinant parvoviral vector or a lentiviral vector, more preferably wherein the vector is a recombinant adeno-associated virus (rAAV) vector.</claim-text></claim>
<claim id="c-en-01-0005" num="0005">
<claim-text>The gene therapy vector for use according to claim <b>4</b>, wherein the gene therapy vector is a recombinant adeno-associated virus vector selected from the group consisting of recombinant adeno-associated virus serotype 1 (rAAV1), recombinant adeno-associated virus serotype 2 (rAAV2), recombinant adeno-associated virus serotype 3 (rAAV3), recombinant adeno-associated virus serotype 4 (rAAV4), recombinant adeno-associated virus serotype 5 (rAAV5), recombinant adeno-associated virus serotype 6 (rAAV6), recombinant adeno-associated virus serotype 7 (rAAV7), recombinant adeno-associated virus serotype 8 (rAAV8), recombinant adeno-associated virus serotype 9 (rAAV9), serotype variants, for example for enhanced transduction of Müller glia cells, such as rAAV6 ShH10 and ShH10Y, and combinations thereof.<!-- EPO <DP n="61"> --></claim-text></claim>
<claim id="c-en-01-0006" num="0006">
<claim-text>The gene therapy vector for use according to any one of the preceding claims, wherein the CRB2 protein comprises or consists of an amino acid sequence that has at least 80% sequence identity with the amino acid sequences of any one of SEQ ID NO: 40-63 or 65-83, more preferably any one of SEQ ID NO: 40-42, and wherein the CRB2 protein is functionally active as measured by electroretinography.</claim-text></claim>
<claim id="c-en-01-0007" num="0007">
<claim-text>The gene therapy vector for use according to any one of the preceding claims, wherein the nucleotide sequence encoding CRB2 is operably linked to expression control elements comprising a promoter that produces sufficient expression of CRB2 to obtain a therapeutic effect, wherein the promoter preferably is selected from the group consisting of: truncated CMV promoter, CMV promoter, truncated human RLBP1 promoter, human photoreceptor specific rhodopsin kinase promoter, and human rod photoreceptor specific rhodopsin promoter, wherein preferably the promoter is selected from the group consisting of: CMV promoter according to SEQ ID NO: 121, truncated human RLBP1 promoter according to SEQ ID NO: 122, human photoreceptor specific rhodopsin kinase promoter according to SEQ ID NO: 123, human rod photoreceptor specific rhodopsin promoter according to SEQ ID NO: 124 and truncated CMV promoter according to SEQ ID NO: 133.</claim-text></claim>
<claim id="c-en-01-0008" num="0008">
<claim-text>An AAV vector comprising a nucleotide sequence encoding a Crumbs homologue-2 (CRB2) protein and at least one parvoviral inverted terminal repeat (ITR) sequence, wherein the nucleotide sequence encoding the CRB2 protein is operably linked to expression control elements comprising a promoter that is capable of sufficient CRB2 protein expression to obtain a therapeutic effect.</claim-text></claim>
<claim id="c-en-01-0009" num="0009">
<claim-text>A virion comprising an AAV vector according to claim <b>8</b>.</claim-text></claim>
<claim id="c-en-01-0010" num="0010">
<claim-text>A host cell comprising the AAV vector according to claim <b>8</b>.</claim-text></claim>
<claim id="c-en-01-0011" num="0011">
<claim-text>A pharmaceutical composition comprising an AAV vector according to claim <b>8</b>, or a virion according to claim <b>9</b>, and a pharmaceutically acceptable excipient.<!-- EPO <DP n="62"> --></claim-text></claim>
<claim id="c-en-01-0012" num="0012">
<claim-text>A kit comprising:
<claim-text>(a) an AAV vector according to claim <b>8</b>, a virion according to claim <b>9</b>, or a pharmaceutical composition according to claim <b>11</b>; and,</claim-text>
<claim-text>(b) optionally, instructions for using the AAV vector, virion or pharmaceutical composition according to (a) in the prevention, treatment, or amelioration of one or more symptoms of a retinal disorder due to mutations in <i>CRB1</i> gene.</claim-text></claim-text></claim>
<claim id="c-en-01-0013" num="0013">
<claim-text>An AAV vector according to claim <b>8</b>, for use as a medicament.</claim-text></claim>
</claims>
<claims id="claims02" lang="de"><!-- EPO <DP n="63"> -->
<claim id="c-de-01-0001" num="0001">
<claim-text>Gentherapievektor zur Verwendung in der Behandlung oder Prophylaxe einer Netzhauterkrankung aufgrund von Mutationen im <i>CRB1</i>-Gen in einem menschlichen Subjekt, wobei der Gentherapievektor eine Nukleotidsequenz umfasst, die ein Crumbs-Homolog-2-(CRB2)-Protein kodiert.</claim-text></claim>
<claim id="c-de-01-0002" num="0002">
<claim-text>Gentherapievektor zur Verwendung nach Anspruch 1, wobei die Netzhauterkrankung Lebersche kongenitale Amaurose oder Retinitis pigmentosa ist, bevorzugt LCA8 oder RP12.</claim-text></claim>
<claim id="c-de-01-0003" num="0003">
<claim-text>Gentherapievektor zur Verwendung nach einem der vorherigen Ansprüche, wobei das CRB2-Protein ein eumetazoisches CRB2-Protein ist, bevorzugt ein CRB2-Protein menschlichen Ursprungs, nicht-menschlichen Primaten-, Mäuse-, Katzen-, Hunde-, Schweine-, Schaf-, Rinder-, Pferde-, Ziegen- oder Wolfursprungs, mehr bevorzugt das CRB2-Protein ein menschliches CRB2-Protein ist.</claim-text></claim>
<claim id="c-de-01-0004" num="0004">
<claim-text>Gentherapievektor zur Verwendung nach einem der vorherigen Ansprüche, wobei der Gentherapievektor ein rekombinanter parvoviraler Vektor oder ein lentiviraler Vektor ist, mehr bevorzugt, wobei der Vektor ein rekombinanter adeno-assoziierter Virus-(rAAV)-Vektor ist.</claim-text></claim>
<claim id="c-de-01-0005" num="0005">
<claim-text>Gentherapievektor zur Verwendung nach Anspruch 4, wobei der Gentherapievektor ein rekombinanter adeno-assoziierter<!-- EPO <DP n="64"> --> Virusvektor ist, ausgewählt aus der Gruppe bestehend aus rekombinantem adeno-assoziiertem Virus Serotyp 1 (rAAV1), rekombinantem adeno-assoziiertem Virus Serotyp 2 (rAAV2), rekombinantem adeno-assoziiertem Virus Serotyp 3 (rAAV3), rekombinantem adeno-assoziiertem Virus Serotyp 4 (rAAV4), rekombinantem adeno-assoziiertem Virus Serotyp 5 (rAAV5), rekombinantem adeno-assoziiertem Virus Serotyp 6 (rAAV6), rekombinantem adeno-assoziiertem Virus Serotyp 7 (rAAV7), rekombinantem adeno-assoziiertem Virus Serotyp 8 (rAAV8), rekombinantem adeno-assoziiertem Virus Serotyp 9 (rAAV9), Varianten des Serotyps, zum Beispiel zur verstärkten Transduktion von Müller-Gliazellen, wie rAAV6 ShH10 und ShH10Y, und Kombinationen davon.</claim-text></claim>
<claim id="c-de-01-0006" num="0006">
<claim-text>Gentherapievektor zur Verwendung nach einem der vorherigen Ansprüche, wobei das CRB2-Protein eine Aminosäuresequenz umfasst oder daraus besteht, die wenigstens 80 % Sequenzidentität mit den Aminosäuresequenz einer der SEQ ID NR: 40-63 oder 65-83, mehr bevorzugt einer der SEQ ID NR: 40-42 aufweist, und wobei das CRB2-Protein funktionell aktiv ist, gemessen durch Elektroretinographie.</claim-text></claim>
<claim id="c-de-01-0007" num="0007">
<claim-text>Gentherapievektor zur Verwendung nach einem der vorherigen Ansprüche, wobei die Nukleotidsequenz, die CRB2 kodiert, operabel mit Expressionskontrollelementen verbunden ist, die einen Promoter umfassen, der eine ausreichende CRB2-Expression erzeugt, um eine therapeutische Wirkung zu erhalten, wobei der Promoter bevorzugt ausgewählt ist aus der Gruppe bestehend aus: verkürztem CMV-Promotor, CMV-Promotor, verkürztem menschlichem RLBP1-Promotor, menschlichem Photorezeptor-spezifischem Rhodopsin-Kinase-Promotor und menschlichem Stäbchen-Photorezeptor-spezifischem Rhodopsin-Promotor, wobei der Promotor bevorzugt ausgewählt ist aus der Gruppe bestehend aus: CMV-Promotor nach SEQ ID NR: 121, verkürztem menschlichem RLBP1-Promotor nach SEQ ID NR: 122, menschlichem Photorezeptor-spezifischem Rhodopsin-Kinase-Promotor<!-- EPO <DP n="65"> --> nach SEQ ID NR: 123, menschlichem Stäbchen-Photorezeptor-spezifischem Rhodopsin-Promotor nach SEQ ID NR: 124 und verkürztem CMV-Promotor nach SEQ ID NR: 133.</claim-text></claim>
<claim id="c-de-01-0008" num="0008">
<claim-text>AAV-Vektor umfassend eine Nukleotidsequenz, die ein Crumbs-Homolog-2-(CRB2)-Protein und wenigstens eine parvovirale invertierte terminale (ITR) Sequenz kodiert, wobei die Nukleotidsequenz, die das CRB2-Protein kodiert, operabel mit Expressionskontrollelementen verbunden ist, die einen Promoter umfassen, der zu einer ausreichenden CRB2-Proteinexpression in der Lage ist, um eine therapeutische Wirkung zu erhalten.</claim-text></claim>
<claim id="c-de-01-0009" num="0009">
<claim-text>Virion umfassend einen AAV-Vektor nach Anspruch 8.</claim-text></claim>
<claim id="c-de-01-0010" num="0010">
<claim-text>Wirtszelle umfassend den AAV-Vektor nach Anspruch 8.</claim-text></claim>
<claim id="c-de-01-0011" num="0011">
<claim-text>Pharmazeutische Zusammensetzung umfassend einen AAV-Vektor nach Anspruch 8, oder ein Virion nach Anspruch 9, und einen pharmazeutisch akzeptablen Hilfsstoff.</claim-text></claim>
<claim id="c-de-01-0012" num="0012">
<claim-text>Kit umfassend:
<claim-text>(a) einen AAV-Vektor nach Anspruch 8, ein Virion nach Anspruch 9, oder eine pharmazeutische Zusammensetzung nach Anspruch 11; und,</claim-text>
<claim-text>(b) gegebenenfalls, Instruktionen zum Verwenden des AAV-Vektors, Virions oder der pharmazeutischen Zusammensetzung nach (a) in der Vorbeugung, Behandlung oder Linderung von einem oder mehreren Symptomen einer Netzhauterkrankung aufgrund von Mutationen im <i>CRB1</i>-Gen.</claim-text></claim-text></claim>
<claim id="c-de-01-0013" num="0013">
<claim-text>AAV-Vektor nach Anspruch 8, zur Verwendung als Medikament.</claim-text></claim>
</claims>
<claims id="claims03" lang="fr"><!-- EPO <DP n="66"> -->
<claim id="c-fr-01-0001" num="0001">
<claim-text>Vecteur de thérapie génique destiné à être utilisé dans le traitement ou la prophylaxie d'un trouble rétinien dû à des mutations du gène <i>CRB1</i> chez un sujet humain, dans lequel le vecteur de thérapie génique comprend une séquence nucléotidique codant pour une protéine Crumbs homologue-2 (CRB2).</claim-text></claim>
<claim id="c-fr-01-0002" num="0002">
<claim-text>Vecteur de thérapie génique destiné à être utilisé selon la revendication <b>1</b>, dans lequel le trouble rétinien est l'amaurose congénitale de Leber ou la rétinite pigmentaire, de préférence LCA8 ou RP12.</claim-text></claim>
<claim id="c-fr-01-0003" num="0003">
<claim-text>Vecteur de thérapie génique destiné à être utilisé selon l'une quelconque des revendications précédentes, dans lequel la protéine CRB2 est une protéine CRB2 eumétazoaire, de préférence une protéine CRB2 d'origine humaine, primate non humaine, murine, féline, canine, porcine, ovine, bovine, équine, caprine ou lupine, plus préférentiellement la protéine CRB2 est une protéine CRB2 humaine.</claim-text></claim>
<claim id="c-fr-01-0004" num="0004">
<claim-text>Vecteur de thérapie génique destiné à être utilisé selon l'une quelconque des revendications précédentes, dans lequel le vecteur de thérapie génique est un vecteur<!-- EPO <DP n="67"> --> parvoviral recombinant ou un vecteur lentiviral, plus préférablement dans lequel le vecteur est un vecteur de virus adéno-associé recombinant (rAAV).</claim-text></claim>
<claim id="c-fr-01-0005" num="0005">
<claim-text>Vecteur de thérapie génique destiné à être utilisé selon la revendication <b>4</b>, dans lequel le vecteur de thérapie génique est un vecteur de virus adéno-associé recombinant choisi dans le groupe constitué du virus adéno-associé recombinant de sérotype 1 (rAAV1), du virus adéno-associé recombinant de sérotype 2 (rAAV2), du virus adéno-associé recombinant de sérotype 3 (rAAV3), du virus adéno-associé recombinant de sérotype 4 (rAAV4), du virus adéno-associé recombinant de sérotype 5 (rAAV5), du virus adéno-associé recombinant de sérotype 6 (rAAV6), du virus adéno-associé recombinant de sérotype 7 (rAAV7), du virus adéno-associé recombinant de sérotype 8 (rAAV8), du virus adéno-associé recombinant de sérotype 9 (rAAV9), de variants de sérotype, par exemple pour la transduction améliorée des cellules gliales de Muller, tels que rAAV6 ShH10 et ShH10Y, et des combinaisons de ceux-ci.</claim-text></claim>
<claim id="c-fr-01-0006" num="0006">
<claim-text>Vecteur de thérapie génique destiné à être utilisé selon l'une quelconque des revendications précédentes, dans lequel la protéine CRB2 comprend ou est constitué d'une séquence d'acides aminés qui a au moins 80 % d'identité de séquence avec les séquences d'acides aminés de l'une quelconque de SEQ ID NO: 40 à 63 ou 65 à 83, plus préférablement l'une quelconque de SEQ ID NO: 40 à 42, et dans lequel la protéine CRB2 est active sur le plan fonctionnel comme mesuré par électrorétinographie.</claim-text></claim>
<claim id="c-fr-01-0007" num="0007">
<claim-text>Vecteur de thérapie génique destiné à être utilisé selon l'une quelconque des revendications précédentes, dans lequel la séquence nucléotidique codant pour CRB2<!-- EPO <DP n="68"> --> est liée de manière fonctionnelle à des éléments de contrôle de l'expression comprenant un promoteur qui produit une expression suffisante de CRB2 pour obtenir un effet thérapeutique, dans lequel le promoteur est de préférence choisi dans le groupe constitué de : un promoteur de CMV tronqué, un promoteur de CMV, un promoteur de RLBP1 humain tronqué, un promoteur de rhodopsine kinase spécifique du photorécepteur humain et un promoteur de rhodopsine spécifique du photorécepteur à bâtonnet humain, dans lequel de préférence le promoteur est choisi dans le groupe constitué de : un promoteur de CMV selon SEQ ID NO: 121, un promoteur de RLBP1 humain tronqué selon SEQ ID NO: 122, un promoteur de rhodopsine kinase spécifique du photorécepteur humain selon SEQ ID NO: 123, un promoteur de rhodopsine spécifique du photorécepteur à bâtonnet humain selon SEQ ID NO: 124 et un promoteur de CMV tronqué selon SEQ ID NO: 133.</claim-text></claim>
<claim id="c-fr-01-0008" num="0008">
<claim-text>Vecteur AAV comprenant une séquence nucléotidique codant pour une protéine Crumbs homologue-2 (CRB2) et au moins une séquence répétée terminale inversée (ITR) parvovirale, dans lequel la séquence nucléotidique codant pour la protéine CRB2 est liée de manière opérationnelle à des éléments de contrôle de l'expression comprenant un promoteur qui est capable d'exprimer suffisamment la protéine CRB2 pour obtenir un effet thérapeutique.</claim-text></claim>
<claim id="c-fr-01-0009" num="0009">
<claim-text>Virion comprenant un vecteur AAV selon la revendication <b>8.</b></claim-text></claim>
<claim id="c-fr-01-0010" num="0010">
<claim-text>Cellule hôte comprenant le vecteur AAV selon la revendication <b>8.</b><!-- EPO <DP n="69"> --></claim-text></claim>
<claim id="c-fr-01-0011" num="0011">
<claim-text>Composition pharmaceutique comprenant un vecteur AAV selon la revendication <b>8</b>, ou un virion selon la revendication <b>9</b>, et un excipient pharmaceutiquement acceptable.</claim-text></claim>
<claim id="c-fr-01-0012" num="0012">
<claim-text>Kit comprenant :
<claim-text>(a) un vecteur AAV selon la revendication <b>8</b>, un virion selon la revendication <b>9</b>, ou une composition pharmaceutique selon la revendication <b>11</b> ; et,</claim-text>
<claim-text>(b) éventuellement, des instructions pour l'utilisation du vecteur AAV, du virion ou de la composition pharmaceutique selon (a) dans la prévention, le traitement ou l'amélioration d'un ou plusieurs symptômes d'un trouble rétinien dû à des mutations dans le gène <i>CRB1.</i></claim-text></claim-text></claim>
<claim id="c-fr-01-0013" num="0013">
<claim-text>Vecteur AAV selon la revendication <b>8</b>, destiné à être utilisé comme médicament.</claim-text></claim>
</claims>
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<figure id="f0005" num="5a,"><img id="if0005" file="imgf0005.tif" wi="135" he="209" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="75"> -->
<figure id="f0006" num="5b"><img id="if0006" file="imgf0006.tif" wi="131" he="208" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="76"> -->
<figure id="f0007" num="6A,6B,6C,6D,6E"><img id="if0007" file="imgf0007.tif" wi="157" he="232" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="77"> -->
<figure id="f0008" num="7a,7b"><img id="if0008" file="imgf0008.tif" wi="125" he="226" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="78"> -->
<figure id="f0009" num="7c,7d"><img id="if0009" file="imgf0009.tif" wi="120" he="215" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="79"> -->
<figure id="f0010" num="8"><img id="if0010" file="imgf0010.tif" wi="132" he="188" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="80"> -->
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<figure id="f0012" num="10b,11a,11b,11c"><img id="if0012" file="imgf0012.tif" wi="161" he="215" img-content="drawing" img-format="tif"/></figure><!-- EPO <DP n="82"> -->
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<figure id="f0020" num="15e"><img id="if0020" file="imgf0020.tif" wi="123" he="110" img-content="drawing" img-format="tif"/></figure>
</drawings>
<ep-reference-list id="ref-list">
<heading id="ref-h0001"><b>REFERENCES CITED IN THE DESCRIPTION</b></heading>
<p id="ref-p0001" num=""><i>This list of references cited by the applicant is for the reader's convenience only. It does not form part of the European patent document. Even though great care has been taken in compiling the references, errors or omissions cannot be excluded and the EPO disclaims all liability in this regard.</i></p>
<heading id="ref-h0002"><b>Patent documents cited in the description</b></heading>
<p id="ref-p0002" num="">
<ul id="ref-ul0001" list-style="bullet">
<li><patcit id="ref-pcit0001" dnum="US6103526A"><document-id><country>US</country><doc-number>6103526</doc-number><kind>A</kind></document-id></patcit><crossref idref="pcit0001">[0021]</crossref></li>
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</ul></p>
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</ep-patent-document>
