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(11) | EP 3 099 692 B9 |
| (12) | CORRECTED EUROPEAN PATENT SPECIFICATION |
| Note: Bibliography reflects the latest situation |
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BIFUNCTIONAL CYTOTOXIC AGENTS BIFUNKTIONELLE ZYTOSTATIKA AGENTS CYTOTOXIQUES BIFONCTIONNELS |
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| Note: Within nine months from the publication of the mention of the grant of the European patent, any person may give notice to the European Patent Office of opposition to the European patent granted. Notice of opposition shall be filed in a written reasoned statement. It shall not be deemed to have been filed until the opposition fee has been paid. (Art. 99(1) European Patent Convention). |
FIELD OF THE INVENTION
BACKGROUND
SUMMARY OF THE INVENTION
F1 and F2 are each independently selected from ring systems A, B, C and D:
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, -C1-C5 alkyl for each ring system in which W1 and W2 appear;
each X is independently -OH, -O-acyl, azido, halo, cyanate, thiocyanate, isocyanate,
thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from the group consisting of H, -C1-C6 alkyl-RA, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -PO(ORA)2, for each ring system in which Y appears, wherein each RA is independently selected from the group consisting of H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2, wherein said -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2 are optionally substituted with 1 to 3 subsitutents independently selected from R;
each Z is independently selected from the group consisting of H, and -C1-C8 alkyl and wherein said C1-C8 are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond;
T is selected from:
-C(A1)X1-T2-X1C(B1)-, where T2 is:
wherein each X1 is independently a bond, wherein A1 and B1 are each independently =O wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1)pentane or cubane, where said bicyclo(1.1.1) pentane or cubane are optionally substituted with -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE or -N(R)C(O)ORE, and D is additionally optionally substituted by 1 to 2 R, and
wherein each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R.
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears; each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, -C1-C5 alkyl for each ring system in which W1 and W2 appear;
each X is independently selected from -OH, -O-acyl, azido, halo, cyanate, thiocyanate,
isocyanate, thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from a bond, H, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -P(O)(ORA)2 for each ring system in which Y appears, wherein each RA is independently selected from H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C1-C20 alkylN(R)2, -C1-C20 alkylene, -C1-C8 heteroalkylene, -C6-C14 arylene, aralkylene, -C1-C10 heterocyclo, -C3-C8 carbocyclo and -C1-C20 alkylN(R)-, and RF where said RA is optionally substituted with 1 to 3 subsituents independently selected from R, and wherein one Y is divalent and is bonded to L,
RF is -N(R6)QN(R5)C(O)- and is bonded to L at the carbonyl adjacent N(R5), wherein R5 and R6 are each independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, -aralkyl, -C1-C10 heterocyclyl and -C3-C8 carbocyclyl, or R5 or R6 joins with a substituted carbon on Q to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring, or R5 and R6 join together to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring system, and where Q is -C1-C8 alkylene-, -C1-C8 heteroalkylene-, -C6-C14 arylene-, -aralkylene-, -C1-C10 heterocyclo- or -C3-C8 carbocyclo-, wherein Q, R5 and R6 are each independently optionally substituted with 1 to 3 subsituents independently selected from R;
each Z is independently selected from the group consisting of H, -C1-C8 alkyl and wherein said C1-C8 alkyl, are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently selected from a direct bond
T is selected from:
-C(A1)X1-T2-X1C(B1)-, where T2 is:
wherein each X1 is independently a bond wherein A1 and B1 are each independently =O wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1)pentane or cubane where said bicyclo(1.1.1)pentane or cubane is optionally substituted with -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE or -N(R)C(O)ORE, and D is additionally optionally substituted by 1 to 2 R, and
wherein each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C-1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R,
L is LA-LB-(LC)-1-3, wherein LA is selected from the group consisting of -halo, -N(R)2, -CON(R)2, -S-aryl optionally substituted with -NO2 or -CON(R)2, -S-heteroaryl optionally substituted with -NO2, alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3 wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)-,
-C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S- , -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20,
wherein LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20,
LB3 is -PABA-, -PABC- or absent;
LC is absent or independently selected from the group consisting of -C1-C6alkylene-, -NRC3-C8-heterocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylene-, -S-, -NR-, -NRNR-, -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylenephenyleneNR-, -NRC1-C6alkylenephenyleneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
and
XA is CR or N ,
XB is CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) or N,
each XC is R,
each XD is -(CH2)1-5-, or is absent;
XE is O, S, C(R)2, C(R)(C(R)2)1-3-NR2 or NR and
each XF is (C(R)2)1-3-NR or C(R)2-(C(R)2)1-3-O.
AB is an antibody;
P is:
F1-L1-T-L2-F2
wherein:
F1 and F2 are each independently selected from ring systems A, B, C and D:
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, -C1-C5 alkyl for each ring system in which W1 and W2 appear;
each X is independently selected from -OH, -O-acyl, azido, halo, cyanate, thiocyanate,
isocyanate, thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from a bond, H, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -P(O)(ORA)2 for each ring system in which Y appears, wherein each RA is independently selected from H, -CrC20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C1-C20 alkylN(R)2, -C1-C20 alkylene, -C1-C8 heteroalkylene, -C6-C14 arylene, aralkylene, -C1-C10 heterocyclo, -C3-C8 carbocyclo and -CrC20 alkylN(R)-, and RF where said RA is optionally substituted with 1 to 3 subsituents independently selected from R, and wherein one Y is divalent and is bonded to L,
RF is -N(R6)QN(R5)C(O)- and is bonded to L at the carbonyl adjacent N(R5), wherein R5 and R6 are each independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, -aralkyl, -C1-C10 heterocyclyl and -C3-C8 carbocyclyl, or R5 or R6 joins with a substituted carbon on Q to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring, or R5 and R6 join together to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring system, and where Q is -C1-C8 alkylene-, -C1-C8 heteroalkylene-, -C6-C14 arylene-, -aralkylene-, -C1-C10 heterocyclo- or -C3-C8 carbocyclo-, wherein Q, R5 and R6 are each independently optionally substituted with 1 to 3 subsituents independently selected from R;
each Z is independently selected from the group consisting of H, -C1-C8 alkyl and wherein said C1-C8 alkyl, are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond
T is selected from:
-C(A1)X1-T2-X1C(B1)-, where T2 is:
wherein each X1 is independently a bond, wherein A1 and B1 are each independently =O wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1)pentane or cubane, where said bicyclo(1.1.1)pentane or cubane are optionally substituted with -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE or -N(R)C(O)ORE, and D is additionally optionally substituted by 1 to 2 R, and
wherein each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R,
L is LA-LB-(LC)1-3;
LA is selected from: a bond to AB, -NR-(bond to AB), alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3
wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)- ,-C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(0)Ci.C6a!ky!-NRC(0)Ci.6a!ky!-, -N=CR-phenyl-O-C1-C6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20;
LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20,
LB3 is -PABA-, -PABC- or is absent,
LC is absent or is independently selected from the group consisting of -C1-C6alkylene-, -NRC3-C8-heterocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylene-, -S-, -NR-, -NRNR- , -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylenephenyleneNR-, -NRC1-C6alkylenephenyleneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
and
XA is CR or N,
XB is CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) or N,
each XC is R;
each XD is -(CH2)1-5-, or is absent;
XE is O, S, C(R)2, C(R)(C(R)2)1-3-NR2 or NR, and
each XF is (C(R)2)1-3-NR or C(R)2-(C(R)2)1-3-O.
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, -C1-C5 alkyl for each ring system in which W1 and W2 appear; each X is independently -OH, -O-acyl, azido, halo, cyanate, thiocyanate,
isocyanate, thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from the group consisting of H, -C1-C6 alkyl-RA -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(R A)2, -C(S)N(RA)2, glycosyl, -NO2 and -PO(ORA)2, for each ring system in which Y appears, wherein each RA is independently selected from the group consisting of H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2, wherein said -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2 are optionally substituted with 1 to 3 subsitutents independently selected from R;
each Z is independently selected from the group consisting of H, -C1-C8 alkyl and wherein said C1-C8 alkyl, are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond
T is selected from:
-C(A1)X1-T2-X1C(B1)-, where T2 is:
wherein each X1 is independently a bond, wherein A1 and B1 are each independently =O, wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1)pentane or cubane where said bicyclo(1.1.1)pentane or cubane are substituted with one member of the group selected from N(RE)C(O)- where the carbonyl is bonded to L, and -C(O)- where the carbonyl is bonded to L, and additionally optionally substituted by 1 to 2 R;
where each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R;
L is LA-LB-(LC)1-3;
LA is selected from -halo, -N(R)2, -CON(R)2, -S-aryl optionally substituted with -NO2 or -CONR2, -S-heteroaryl optionally substituted with -NO2, alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3
wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)- , -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20;
LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20,
LB3 is -PABA-, -PABC- or is absent;
LC is absent or is independently selected from the group consisting of -C1-C6alkylene-, -NRC3-C8-heterocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylene-, -S-, -NR-, -NRNR-, -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylenephenyleneNR-, -NRC1-C6alkylenephenyleneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
and
XA is CR or N,
XB is CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) or N;
each XC is R;
each XD is -(CH2)1-5-, or is absent;
XE is O, S, C(R)2, C(R)(C(R2)1-3-NR2 or NR, and
each XF is (C(R)2)1-3-NR or C(R)2-(C(R)2)1-3-O.
AB is an antibody;
F1 and F2 are each independently selected from ring systems A, B, C and D:
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein
said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected
from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, -C1-C5 alkyl for each ring system in which W1 and W2 appear;
each X is independently -OH, -O-acyl, azido, halo, cyanate, thiocyanate, isocyanate,
thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from the group consisting of H, -C1-C6 alkyl-RA-C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -PO(ORA)2, for each ring system in which Y appears, wherein each RA is independently selected from the group consisting of H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2, wherein said -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2 are optionally substituted with 1 to 3 subsitutents independently selected from R;
each Z is independently selected from the group consisting of H, -C1-C8 alkyl and wherein said C1-C8 alkyl, are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond
T is selected from:
-C(A1)X1-T2-X1C(B1)-,
where T2 is:
wherein each X1 is independently a bond wherein A1 and B1 are each independently =O wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1)pentane or cubane where said bicyclo(1.1.1)pentane or cubane are substituted with one member of the group selected from N(RE)C(O)- where the carbonyl is bonded to L, and -C(O)- where the carbonyl is bonded to L, and additionally optionally substituted by 1 to 2 R;
where each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R;
L is LA-LB-(LC)1-3;
LA is selected from: a bond to AB, -NR-(bond to AB), alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3
wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20;
LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20,
LB3 is -PABA-, -PABC- or is absent;
Lc is absent or is independently selected from the group consisting of -C1-C6alkylene-, -NRC3-C8-heterocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylene-, -S-, -NR-, -NRNR-, -O(CR2)1-4-S(CR2)1-4N(R)-, -NRC1-C6-alkylenephenyleneNR-, -NRC1-C6alkylenephenyleneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
and
XA is CR or N,
XB is CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) or N;
each XC is R;
each XD is -(CH2)1-5-, or is absent;
XE is O, S, C(R)2, C(R)(C(R)2)1-3-NR2 or NR, and
each XF is (C(R)2)1-3-NR or C(R)2-(C(R)2)1-3-O.
LB is LB1-LB2-LB3 wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)-, -C(S)- , -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20, wherein LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20, and LB3 is -PABA-, -PABC- or is absent; and
LC is absent.
LB is LB1-LB2-LB3 wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)- , -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20, wherein LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20, and LB3 is -PABA-, -PABC- or absent; and
LC is absent.
DETAILED DESCRIPTION
Definitions and Abbreviations
The Antibody Unit (A, Ab or AB)
The Linker Unit (L)
Synthesis of Compounds and Antibody Drug Conjugates Thereof
Conjugation with Transglutaminase
Conjugation to the Human Light Chain Kappa Domain Constant Region
Compositions and Methods of Administration
Therapeutics Uses of Compounds and Antibody Drug Conjugates Thereof
Exemplification of Payloads and Linker-Payloads
Preparation of (S)-8-(chloromethyl)-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-ol
Preparation of Reference Example (S)-furan-2,5-diylbis(((S)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)methanone) (13)
Preparation of Reference Example (S)-((1R,3S)-cyclohexane-1,3-diyl)bis(((S)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)met hanone) (16)
Step 1: Cis-cyclohexane-1,3-dicarboxylic acid (14, 10 mg, 0.058 mmol) was dissolved in THF (2 mL), added oxalyl chloride (2M in CH2Cl2, 0.09 mL, 0.17 mmol) and DMF (2 drops) at 0°C. The mixture was stirred at 0°C for 5 min, then at room temperature for 1 h. Concentrated in vacuo to give the corresponding acid chloride 15 as off-white solid, which was used in next step without further purification.
Step 2: The above compound 15 was dissolved in DMF (2 ml) at 0°C, added (S)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-ol HCl salt (4, 25 mg, 0.093 mmol), followed by pyridine (0.029 mL, 0.36 mmol). The mixture was stirred at room temperature for overnight. DMF was removed under reduced pressure, and the residue was purified by ISCO using MeOH/DCM (0-20%) to give the product 16 as dark blue solid (8.5 mg, 31%). LC-MS: m/z 603.4 [M + H], retention time = 1.03 min. 1H NMR (400 MHz, DMSO-d6), δ 10.36 (s), 8.09 (d), 8.03 (s), 7.80 (t), 7.53 (t), 7.33 (t), 4.44 (m), 4.33 (d), 4.18 (s), 4.02 (m), 3.85 (m), 2.88 (m), 2.04 - 1.90 (m), 1.74 (q), 1.52 - 1.45 (m).
Preparation of Reference Example (S)-pyridine-2,6-diylbis(((S)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)methanone) (18)
Preparation of Reference Example (S)-1,3-phenylenebis(((S)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)methanone) [20]
Preparation of Reference Example (S)-3,3'-thiobis(1-((S)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)propan-1-one) (23)
Step 1: 3,3'-thiodipropanoic acid (21, 8 mg, 0.04 mmol) was dissolved in THF (2 mL), added oxalyl chloride (2M in CH2Cl2, 0.4 mL, 0.2 mmol) and DMF (2 drops) at 0°C. The mixture was stirred at 0°C for 5 min, then at room temperature for 1 h. Concentrated in vacuo to give the corresponding acid chloride 22 that was used in next step without further purification.
Step 2: The above compound 22 was dissolved in DMF (2 ml) at 0°C, added (S)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-ol HCI salt (6) (25 mg, 0.09 mmol), followed by pyridine (0.022 mL, 0.27 mmol). The mixture was stirred at room temperature for overnight. DMF was removed under reduced pressure, and the residue was purified by ISCO using MeOH/DCM (0-10%) to give the product 23 as off-white solid (15 mg, 50%). LC-MS (Protocol B): m/z 609.1 [M + H], retention time = 1.0 min. 1H NMR (400 MHz, DMSO-d6), δ 10.36 (s), 8.09 (d), 7.99 (s), 7.79 (d), 7.50 (t), 7.33 (t), 4.37 (m), 4.19 (m), 3.99 (d), 3.82 (m), 2.90 -2.82 (m).
Preparation of Reference Example (S)-pyridine-3,5-diylbis(((S)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)methanone) (26)
Step 1; Pyridine-3,5-dicarboxylic acid (24, 7 mg, 0.04 mmol) was added 2 mL of DCM, followed by 2M oxalyl chloride (0.2 mL, 0.4 mmol), and DMF (2 drops). The clear solution was stirred at room temperature for 2 h, and concentrated to give the corresponding acid chloride 25 as yellow solid.
Step 2; The above solid 25 was dissolved in DMF (0.2 mL), and the solution was added to a solution of (S)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-ol HCI salt (4)(25 mg, 0.09 mmol) in DMF (1 mL), followed by pyridine (0.02 mL, 0.25 mmol). The mixture was stirred at room temperature for overnight. The solvent was removed in vacuo, and the residue was purified by using ISCO (MeOH/DCM = 0-10%) to give the product 26 as grey solid (20 mg, 80%). LC-MS (Protocol B): m/z 598.1 [M + H], retention time = 0.95 min.1H NMR (400 MHz, DMSO-d6), δ 10.55 (s), 9.00 (s), 8.2 (s), 7.97 (s), 7.84 (d), 7.53 (t), 7.36 (t), 4.50 (s), 4.10 (s), 3.98 (s), 3.86 (s).
Preparation of Reference Example (S)-thiophene-2,5-diylbis(((S)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)methanone) (29) and (S)-5-(1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e] indole-3-carbonyl)thiophene-2-carboxylic acid (30)
Preparation of Reference Example (S)-(1H-pyrrole-2,5-diyl)bis(((S)-1-(chloromethyl)-5-hydroxy-1h-benzo[e]indol-3(2H)-yl)methanone) (32)
Preparation of Reference Example (5)-thiophene-2,4-diylbis(((5)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)methanone) (35)
Step 1: 2,4-Thiophenedicarboxylic acid (33, 100 mg, 0.58 mmol) was dissolved in THF (5 mL), cooled to 0°C with ice bath. Oxalyl chloride (0.75 mL, 2M in CH2Cl2, 1.5 mmol) was added, followed by 2 drops of DMF. The resulting mixture was allowed to warm to room temperature, and stirred for 1 h. Some white precipitates can be observed during this period. The mixture was concentrated in vacuo to give thiophene-2,4-dicarbonyl dichloride (34) as off-white solid (122 mg, 100%).
Step 2: (S)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-ol [4] (81 mg, HCI salt, 0.3 mmol) was dissolved in THF (3 mL), and added Et3N (0.125 mL, 0.9 mmol) at 0C, followed by a solution of thiophene-2,4-dicarbonyl dichloride (24, 31.4 mg, 0.15 mmol) in CH2Cl2 (1 mL). The mixture was stirred at 0°C for 5 min, and then stirred at room temperature for 2 h. The reaction mixture was reduced down, and the residue was treated with MeOH, and the resulting yellow solid was collected by filtration to give the crude product. The crude was purified by Gislon HPLC (ACN/water, 0.02%TFA) to give the product 35 as yellow solid (40 mg, 44%). LC-MS (Protocol B): m/z 603.3 [M + H], retention time = 1.96 min.1H NMR (400 MHz, DMSO-d6), δ 10.46 (d), 8.41 (s), 8.13 (d), 8.05 (s), 7.87 (t), 7.54 (t), 7.39 (m), 4.81 (t), 4.61 (s), 4.46(d), 4.21 (m), 4.18 (m), 4.00 (m), 3.98 - 3.86 (m).
Preparation of Reference Example (S)-(1-methyl-1H-pyrrole-2,5-diyl)bis(((S)-1-(chloromethyl)-5-hydroxy-1H-benzo[e]indol-3(2H)-yl)met hanone) (38)
Step 1: 1-Methyl-1H-pyrrole-2,5-dicarboxylic acid (36, 20 mg, 0.12 mmol) was dissolved in THF (2 mL), added oxalyl chloride (2M in CH2Cl2, 0.18 mL, 0.35 mmol) and DMF (2 drops) at 0°C. The mixture was stirred at 0°C for 5 min, then at room temperature for 1 h. Concentrated in vacuo to give the corresponding acid chloride 37 as off-white solid, which was used in next step without further purification.
Step 2: The above compound 37 was dissolved in THF (2 ml) at 0°C, added (S)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-ol HCI salt [4] (65 mg, 0.24 mmol), followed by Et3N (0.1 mL, 0.71 mmol). The mixture was stirred at 0°C for 5 min, then at room temperature for 1 h. The mixture was concentrated in vacuo, and the residue was purified by Gilson HPLC (0.02% TFA) to give the product 38 as off-white solid (31 mg, 44%). LC-MS: m/z 600.5 [M + H], retention time = 1.04 min.1H NMR (400 MHz, DMSO-d6), δ 10.44 (s), 8.13 (d), 7.84 (d), 7.75 (s), 7.53 (t), 7.38 (t), 6.78 (s), 4.60 (t), 4.30 (d), 4.08 (s), 4.02 (d), 3.9 (s), 3.87 (d).
Preparation of Reference Example 3-Amino-1,5-bis-((S)-1-chloromethyl-5-hydroxy-1,2-dihydro-enzo[e]indol-3-yl)-pentane-1,5-dione (40).
Step 1: In a round bottom flask purged with N2, containing 3-(9H-Fluoren-9-ylmethoxycarbonylamino)-pentanedioic acid (918 mg, 2.48 mmol) in 20 mL of anhydrous dichloromethane was added Oxalyl Chloride (5.22 mmol, 0.469 mL). To this solution was added 1 drop of N, N-dimethylformamide. The reaction mixture was stirred for 3 hours and concentrated in vacuo to a crude residue. The residue was taken up in dichloromethane (10 mL) and added drop wise to a round bottom flask containing (2) (1610 mg, 4.97 mmol) in 25 mL of dichloromethane and triethylamine (2.08 mL). The crude reaction mixture was concentrated in vacuo and taken back up in 25 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), Water (3x), and Brine (2x). Dried organic layer over sodium sulfate, filtered and concentrated the filtrate to a crude solid. Silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing (39) (2.103g, 86%) as a pale white solid. LC-MS (Protocol B): m/z 982 [M+H+], retention time = 2.81 minutes.
Step 2: A stirring solution of 39, {3-((S)-5-Benzyloxy-1-chloromethyl-1,2-dihydro-benzo[e]indol-3-yl)-1-[2-((S)-5-benzyloxy-1-chlorome thyl-1,2-dihydro-benzo[e]indol-3-yl)-2-oxo-ethyl]-3-oxo-ropyl}-carbamic acid 9H-fluoren-9-ylmethyl ester, (92 mg, 0.104 mmol) in 10 mL of tetrahydrofuran under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (16 mg, 0.15mmol) was then added followed by the slow drop wise addition of 1 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 5 hours. The reaction was then filtered through a pad of celite and the filtrate was then concentrated in vacuo. The crude residue was taken up in dichloromethane and washed with water. The dichloromethane layer was concentrated and 2 mL of 1 M HCI (aq) was added and concentrated. The residue was taken up in ethyl acetate and the solids were filtered to afford 40 as a white solid (52 mg, 51%). LC-MS (Protocol B): m/z 578 [M+H+], retention time = 1.42 minutes.
Preparation of Reference Example 3-(3-Amino-phenyl)-1,5-bis-((S)-1-chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indol-3-yl)-pentane-1,5-dione (44)
Step 1: In a round bottom flask purged with N2, containing 3-(3-Nitro-phenyl)-pentanedioic acid (3, 330 mg, 1.30 mmol) in 15 mL of anhydrous dichloromethane was added Oxalyl Chloride (2.6 mmol, 0.24 mL). To this solution was added 1 drop of N, N-dimethylformamide. The reaction mixture was stirred for 3 hours and concentrated in vacuo to afford 42 as a white solid (378 mg, 1.30 mmol, quantitative).
Step 2: In a round bottom flask containing 2 (124 mg,0.344 mmol) in 15 mL of dichloromethane was added 3-(3-Nitro-phenyl)-pentanedioyl dichloride (42) (42 mg, 0.172 mmol). Triethylamine (0.08 mL) was then added and the system was stirred for 1 hour at room temperature. The crude reaction mixture was concentrated in vacuo and taken back up in 25 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude solid. The crude solid was taken up in 10% MeOH in EtOAc and the white solids were filtered to give desired product 43 (120 mg, 0.172 mmol, 80%). LC-MS (Protocol B): m/z 864 [M+H+], retention time = 2.75 minutes.
Step 3: A stirring solution of 43 (85 mg, 0.098 mmol) in 10 mL of tetrahydrofuran under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (16 mg, 0.15mmol) was then added followed by the slow drop wise addition of 2 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 5 hours. The reaction was then filtered through a pad of celite and the filtrate was then concentrated in vacuo. The crude residue was taken up in dichloromethane and washed with water. The dichloromethane layer was concentrated and 2 mL of 1 M HCI (aq) was added and concentrated. The residue was taken up in ethyl acetate and the solids were filtered to afford (44) as a white solid. (35 mg, 52%). LC-MS: m/z 654 [M+H+], retention time = 1.93 minutes.
Preparation of Reference Example 3-(4-Amino-phenyl)-1,5-bis-((S)-1-chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indol-3-yl)-pentane-1,5-dione 48
Step 1: In a round bottom flask purged with N2, containing 3-(4-Nitro-phenyl)-pentanedioic acid (45, 110 mg, 0.434 mmol) in 5 mL of anhydrous DCM was added Oxalyl Chloride (0.911 mmol, 0.082 mL). To this solution was added 1 drop of N, N-dimethylformamide. The reaction mixture was stirred for 3 hours and concentrated in vacuo to afford (46) as a white solid (125 mg, 0.434 mmol, quantitative). LCMS, taken in methanol: m/z 282. 0 [M+H+, for bis methanolysis product]. retention time = 1.38 minutes. (7) (Commercial and Literature Known : Tetrahedron, 63(39), 9741-9745; 2007
Step 2: In a round bottom flask containing 2 (111 mg,0.344 mmol) in 15 mL of dichloromethane was added 3-(4-Nitro-phenyl)-pentanedioyl dichloride (46) (50 mg, 0.172 mmol). Triethylamine (0.144 mL) was then added and the system was stirred for 1 hour at room temperature. The crude reaction mixture was concentrated in vacuo and taken back up in 25 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude solid. The crude solid was taken up in 10% MeOH in EtOAc and the white solids were filtered to give desired product (47) (101 mg, 0.115 mmol, 68%). LC-MS: m/z 864 [M+H+], retention time = 2.72 minutes.
Step 3: (10). A stirring solution of (47), 3-(4-nitro-phenyl)-1,5-bis-((S)-1-chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indol-3-yl)-pentane-1, 5-dione (90 mg, 0.1 mmol) in 10 mL of tetrahydrofuran under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (17 mg, 0.16 mmol) was then added followed by the slow drop wise addition of 1 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 5 hours. The reaction was then filtered through a pad of celite and the filtrate was then concentrated in vacuo. The crude residue was taken up in dichloromethane and washed with water. The dichloromethane layer was concentrated and 2 mL of 1 M HCI (aq) was added and concentrated. The residue was taken up in ethyl acetate and the solids were filtered to afford 48 as a white solid. (44 mg, 61%). LC-MS: m/z 654 [M+H+], retention time = 1.73 minutes.
Preparation of Acetic acid Reference Example (S)-3-{2-[2-((S)-5-acetoxy-1-chloromethyl-1,2-dihydro-benzo[e]indol-3-yl)-2-oxo-ethylamino]-acetyl}-1-chloromethyl-2,3-dihydro-1H-benzo[e]indol-5-l ester (53).
Step 1: In a round bottom flask purged with N2, containing 3 [Carboxymethyl-(9H-fluoren-9-ylmethoxycarbonyl)-amino]-acetic acid (49, 300 mg, 0.844 mmol) in 5 mL of anhydrous DCM was added Oxalyl Chloride (1.94 mmol, 0.175 mL). To this solution was added 1 drop of N, N-dimethylformamide. The reaction mixture was stirred for 3 hours and concentrated in vacuo to afford (50) as a white solid (330 mg, 0.844 mmol, quantitative). LCMS, taken in methanol: m/z 384. 0 [M+H+,for bis methanolysis product]. Retention time = 1.91 minutes.
Step 2: In a round bottom flask containing 2 (76 mg,0.21 mmol) in 5 mL of dichloromethane, was added 50 (41 mg, 0.105 mmol). Triethylamine (0.088 mL) was then added and the system was stirred for 1 hour at room temperature. The crude reaction mixture was concentrated in vacuo and taken back up in 25 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude solid. Silica chromatography was then preformed (Gradient: 0%-75% Ethyl Acetate in heptanes) producing (51) (91 mg, 90%) as a pale white solid. LC-MS: m/z 966 [M+H+], retention time = 2.91 minutes.
Step 3: A stirring solution of 51 (40 mg, 0.041 mmol0) in 10 mL of tetrahydrofuran under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (10 mg, 0.09 mmol) was then added followed by the slow drop wise addition of 1 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 5 hours. The reaction was then filtered through a pad of celite and the filtrate was then concentrated in vacuo. The crude residue was taken up in dichloromethane and acetyl chloride (1 mL) was added and the reaction was then concentrated in vacuo. The residue was taken back up in 15 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), water (3x), and brine (2x). Dried organic layer over sodium sulfate, filtered and concentrated the filtrate to a crude solid. Silica chromatography was then preformed (Gradient: 0%-100% Ethyl Acetate in Heptanes) producing (52) (27 mg, 76%) as a white solid. LC-MS: m/z 870 [M+H+], retention time = 2.51 minutes.
Step 4: In a round-bottom flask equipped with a stir bar containing 52 (25 mg, 0.29 mmol) was added 5 mL of dichloromethane and 5 mL of diethyl amine. The solution was stirred for 3 hours. The reaction mixture was concentrated in vacuo and taken up in 50% dichloromethane and heptane and concentrated in vacuo again. This was repeated 3 times. The crude solid was taken up in 50% tetrahydrofuran and 1 M HCI (aq). The white solids was taken up in ether and filtered to afford (15) as a white solid (14 mg, 70%). LC-MS: m/z 648 [M+H+], retention time = 1.78 minutes.
Preparation of Reference Example 3-(4-Amino-phenyl)-N,N-bis-[2-((S)-1-chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indol-3-yl)-2-oxoethyl]-propionamide (56)
Step 1: In a round-bottom flask equipped with a stir bar containing 51 (300 mg, 0.310 mmol) was added 5 mL of dichloromethane and 5 mL of diethyl amine. The solution was stirred for 3 hours. The reaction mixture was concentrated in vacuo and taken up in 50% dichloromethane and heptane and concentrated in vacuo again. This was repeated 3 times to afford (54) as a white solid. (216 mg, 93%). LC-MS: m/z 744 [M+H+], retention time = 2.26 minutes.
Step 2: In a round bottom flask purged with N2, containing 54 (100 mg, 0.134 mmol) in 5 mL of anhydrous dichloromethane was 3-[4-(9H-Fluoren-9-ylmethoxycarbonylamino)-phenyl]-propionic acid (52 mg, 0.134 mmol). To this solution was added (Dimethylamino)-N,N-dimethyl(3H-[1,2,3]triazolo[4,5-b]pyridine-3-yloxy)methaniminium hexafluorophosphate (52 mg, 0.134 mmol) and triethylamine (0.05 mL). The reaction mixture was stirred for 3 hours and concentrated in vacuo to a crude residue. The residue was taken back up in 25 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude solid. Silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing (55) (130 mg, 87%) as a pale white solid. LC-MS: m/z 1113 [M+H+], retention time = 2.771 minutes.
Step 3: A stirring solution of 55 (115 mg, 0.103 mmol) in 10 mL of tetrahydrofuran under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (10 mg, 0.1 mmol) was then added followed by the slow drop wise addition of 1 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 5 hours. The reaction was then filtered through a pad of celite and the filtrate was then concentrated in vacuo. The crude residue was taken up in dichloromethane and washed with water. The dichloromethane layer was concentrated and 2 mL of 1 M HCI (aq) was added and concentrated. The residue was taken up in ethyl acetate and the solids were filtered to afford (56) as a white solid. (26 mg, 34%). LC-MS: m/z 711 [M+H+], retention time = 1.6 minutes.
Preparation of Reference Example [(S)-1-((S)-1-Chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indole-3-carbonyl)-4-((S)-1-chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indol-3-yl)-4-oxo-butyl]-carbamic acid 9H-fluoren-9-ylmethyl ester 60
Step 1: In a round bottom flask purged with N2, containing (S)-2-(9H-Fluoren-9-ylmethoxycarbonylamino)-pentanedioic acid 57 (400 mg, 1.08 mmol) in 15 mL of anhydrous dichloromethane was added Oxalyl Chloride (2.27 mmol, 0.205 mL). To this solution was added 1 drop of N, N-dimethylformamide. The reaction mixture was stirred for 3 hours and concentrated in vacuo to a crude residue 58. The residue was taken up in dichloromethane (10 mL) and added drop wise to a round bottom flask containing 2 (700 mg, 2.17 mmol) in 10 mL of dichloromethane and triethylamine (0.905 mL). The crude reaction mixture was concentrated in vacuo and taken back up in 25 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude solid. Silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing (59,) (260 mg, 24%) as a pale white solid. LC-MS: m/z 980 [M+H+], retention time = 2.84 minutes.
Step 2: A stirring solution of (59), (250 mg, 0.255 mmol) in 10 mL of tetrahydrofuran under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (64 mg, 12.8 mmol) was then added followed by the slow drop wise addition of 2.1 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 30 min. The reaction was then filtered through a pad of celite and the filtrate was then concentrated in vacuo. The crude residue was taken up in dichloromethane and washed with water. Silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing (60) (121 mg, 59%) as a pale white solid. LC-MS: m/z 800 [M+H+], retention time = 2.25 minutes.
Preparation of Reference Example (S)-1-Chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indole-3-carboxylic acid [3-((S)-1-chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indol-3-yl)-3-oxo-propyl]-amide (31). A stirring solution of (65)
Step 1: To a round bottom flask containing (2)(200 mg, 0.555mmol) in dichloromethane (10 mL) was added drop wise, 3-lsocyanato-propionic acid methyl ester 61 (79mg, 0.555 mmol) and triethylamine (0.5 mL). The reaction was stirred for 3 hours. The crude reaction mixture was concentrated in vacuo and taken back up in 25 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude solid. Silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing (62) (0.231 mg, 89%) as a pale white solid. LC-MS: m/z 467 [M+H+], retention time = 2.11 minutes. NMR yes
Step 2: In a round-bottom flask equipped with a stir bar containing 62 (230 mg, 0.493 mmol) was added 5 mL of 1M HCI (aq) in 5 mL of tetrahydrofuran. The solution was stirred for 3 hours at 70 °C. The reaction mixture was concentrated in vacuo and taken up in 50% dichloromethane in heptane and concentrated in vacuo. This was repeated 3 times to afford (63)(180 mg, 83 %) as a white solid upon concentrating. LC-MS: m/z 439 [M+H+], retention time = 1.83 minutes.
Step 3: In a round bottom flask purged with N2, containing (63) (110 mg, 0.250 mmol) in 5 mL of anhydrous DCM was added Oxalyl Chloride (0.250 mmol, 0.02 mL). To this solution was added 1 drop of N, N-dimethylformamide. The reaction mixture was stirred for 3 hours and concentrated in vacuo to a crude residue. The residue was taken up in dichloromethane (10 mL) and added drop wise to a round bottom flask containing 2 (90 mg, .250 mmol) in 10 mL of dichloromethane and triethylamine (0.5 mL). The crude reaction mixture was concentrated in vacuo and taken back up in 15 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCI (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude solid. Silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing (64) (80g, 43%) as a pale white solid. LC-MS: m/z 744 [M+H+], retention time = 2.60 minutes.
Step 4:, 64 (75 mg, 0.100 mmol) in 10 mL of tetrahydrofuran under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (25 mg, 0.24 mmol) was then added followed by the slow drop wise addition of 1 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 5 hours. The reaction was then filtered through a pad of celite and the filtrate was then concentrated in vacuo. The crude residue was taken up in dichloromethane and washed with water. The dichloromethane layer was concentrated and 2 mL of 1 M HCI (aq) was added and concentrated. The residue was taken up in ethyl acetate and the solids were filtered to afford (65 as a white solid. (15 mg, 26%). LC-MS: m/z 564 [M+H+], retention time = 1.88 minutes.
Preparation of Reference Example (1S,1'S)-3,3'-(1H-pyrrole-2,5-dicarbonyl)bis(1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indole-5,3-diyl) diacetate [68]
Step 1: 1H-pyrrole-2,5-dicarboxylic acid (32, 50 mg, 0.3 mmol) was dissolved in THF (5 mL) at 0°C, oxalyl chloride (0.4 mL, 2M in CH2Cl2, 0.8 mmol) was added, followed by 2 drops of DMF. The mixture was stirred at 0°C for 5 min, then room temperature for 2 h. Concentrated in vacuo to give 1H-pyrrole-2,5-dicarbonyl dichloride (33) as a yellow solid, which used in the next step without further purification.
Step 2: It was dissolved in THF (12 mL) at 0°C, 1H-pyrrole-2,5-dicarbonyl dichloride (33, from step 2) was added, followed by Et3N (0.28 mL). The mixture was stirred at 0°C for 5 min, the room temperature for 3 h. The mixture was concentrated in vacuo, and the residue was treated with MeOH to give a grey solid. The solid was collected by filtration to give the crude product as grey solid. The crude was purified by Gilson HPLC (ACN/water, 0.02% TFA) to give the pure product (1S,1'S)-3,3'-(1H-pyrrole-2,5-dicarbonyl)bis(1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indole-5,3-diyl) diacetate as off-white solid (34, 60 mg, 30%). LC-MS: m/z 670.4 [M + H], retention time = 2.20 min. 1H NMR (400 MHz, DMSO-d6), δ 11.77 (s), 8.17 (s), 8.06 (d), 7.92 (d), 7.65 (t), 7.52 (t), 4.80 (t), 4.5 (d), 4.41 (s), 4.10 (d), 4.02 (m), 2.10 (s).
Preparation of Reference Example (1S,1'5)-3,3'-(thiazole-2,5-dicarbonyl)bis(1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indole-5,3-diyl) diacetate [71]
Step 1: Diethyl thiazole-2,5-dicarboxylate (35, 348 mg, 1.5 mmol) was dissolved in THF (10 mL), added a solution of LiOH·H2O (383 mg, 9.0 mmol) in water (5 mL) at 0°C. The mixture was stirred at 0°C for 30 min, then room temperature for 4 h. Concentrated in vacuo to remove THF, and residue was acidified by addition of 1M HCI aq aolution to pH around 4-5. The resulting solid was collected by filtration to give the thiazole-2,5-dicarboxylic acid as white solid (63 mg, 24%). Thiazole-2,5-dicarboxylic acid (20 mg, 0.12 mmol) was dissolved in THF (2 mL), added oxalyl chloride (0.18 mL, 2M in DCM) at 0°C, followed by 2 drops of DMF. The mixture was stirred at 0°C for 5 min, then at room temperature for 1 h. Concentrated in vacuo to give the corresponding acid chloride 70 as white solid.
Step 2: The yellow solid 5 was suspended in THF (3 mL), added the acid chloride from step 2, followed by Et3N (0.05 mL, 0.4 mmol) at 0°C. The mixture was stirred at 0°C for 5 min, and then room temperature for 1 h. The reaction mixture was concentrated in vacuo, and the residue was purified by Gilson HPLC to give the desired compound 71 as yellow solid (3.6 mg, 3.9%). LC-MS: m/z 688.5 [M + H], retention time = 2.27 min.1H NMR (400 MHz, DMSO-d6), δ 8.81 (s), 8.41 (s), 8.27 (s), 8.16 (m), 8.04 (m), 7.74 (m), 7.64 (m), 5.25 (d), 4.94 (q), 4.53 (m), 4.21- 4.08 (m), 2.63 (s).
Preparation of acetic acid Reference Example (S)-3-[5-((S)-5-acetoxy-1-chloromethyl-1,2-dihydro-benzo[e]indole-3-carbonyl)-1-methyl-1H-pyrazole -3-carbonyl]-1-chloromethyl-2,3-dihydro-1H-benzo[e]indol-5-yl ester (74).
Preparation of Reference Example 7-azabicyclo[2.2.1]heptane-1,4-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate 79
Step 1: A mixture of 7-benzyl 1,4-dimethyl 7-azabicyclo[2.2.1]heptane-1,4,7-tricarboxylate (3.20 g, 9.21 mmol) [prepared as described in Chem. Eur. J. 2012, 18, 1127-1141] in the presence of Pd/C (10%, 1000 mg) was hydrogenated at the pressure of a balloon at room temperature for ∼2 hours. The reaction was filtered through a pad of celite and the cake was washed with a solution of 40 mL of methanol and 40 mL of dichloromethane. The organics were combined and concentrated in vacuo to afford a light yellow solid. The a stirring solution of this crude solid in 40 mL of acetone at 0°C, aq. NaHCO3 (1 M, 65 mL, 64.6 mmol) was added followed by the drop wise addition of Fmoc-CI (3.34 g, 12.9 mmol) as a solution in 40 mL of acetone. The reaction was diluted with 100 mL of water and extracted with ethyl acetate (100 mL, 3x). The organics where combined was with water, brine, dried over sodium sulfate, and concentrated in vacuo. Silica gel chromatography was then preformed (Gradient: 12.5% to 17% ethyl acetate in petroleum ether). Appropriate test tubes where combined and concentrated in vacuo yielding a white solid. Crude material was then suspended in aq. HCI (3 M, 60 mL) and 80 mL of dioxane. The reaction was heated to reflux and then allowed to stir at reflux for ∼16 hours. The reaction was then concentrated in vacuo to remove most of the dioxane. The aq. phase was then extracted with ethyl acetate (100 mL, 2x). The organics where combined, washed with brine, dried over sodium sulfate, and concentrated in vacuo. Silica gel chromatography was then preformed (Gradient: 8.3% to 25% methanol in dichloromethane). Appropriate test tubes where combined and concentrated in vacuo and then purified again by preparative HPLC (method M, using gradient 50% B to 80% B over 30 minutes, then 95% over 5 minutes) to provide 76 (400 mg, 12%, 3 steps) as a white solid. 1H NMR (400 MHz, DMSO-d6): δ 7.81-7.79 (d, 2H), 7.72-7.71 (d, 2H), 7.42-7.38 (m, 2H), 7.34-7.31 (m, 2H), 4.35-4.33-7.33 (d, 2H), 4.22-4.19 (m, 1H), 2.28-2.26 (d, 4H), 1.93-1.91 (d, 2H).
Step 2: Following general procedure A using 76 (90 mg, 0.40 mmol), oxalyl chloride (0.033 mL, 0.39 mmol), THF (8 mL) and 1 drop of DMF, 77 was prepared as an off white solid (79 mg, quant.). Crude 77 was used immediately in the next step as is.
Step 3: Following general procedure B using 6 (103 mg, 0.331 mmol), 77 (70 mg, 0.16 mmol), pyridine (0.051 mL, 0.63 mmol) and THF (12 mL) crude material was prepared. The reaction concentrated in vacuo dissolved in DMSO and injected onto a 12g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 30% to 95% acetonitrile in water with 0.02% TFA in each phase). Appropriate test tubes where concentrated using a genevac producing 78 (23 mg, 16%) as a light brown solid. LC-MS (Protocol B): m/z 922.0 [M+H]+, retention time = 2.59 minutes.
Step 4: To a stirring solution of 78 (17.9 mg, 0.019 mmol) in 1.0 mL of DMF, DMAP (47.4 mg, 0.388 mmol) was added. The reaction was allowed to stir at room temperature for ∼60 minutes. Crude reaction was injected onto a 5g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 30% to 95% acetonitrile in water with 0.02% TFA in each phase). Appropriate test tubes where concentrated using a genevac producing 79 (6.1 mg, 39%) as a light brown solid. LC-MS (Protocol B): m/z 700.1 [M+H]+, retention time = 1.47 minutes. 1H NMR (400 MHz, DMSO-d6): δ 10.26-10.17 (m, 2H), 8.28-8.24 (m, 2H), 8.11-8.06 (d, 2H), 8.00-7.95 (d, 2H), 7.71-7.64 (t, 2H), 7.60-7.53 (t, 2H), 4.56-4.37 (m, 6H), 4.18-4.05 (m, 4H),2.83-2.59 (m, 8H), 2.49-2.37 (m, 6H).
Preparation of (1S,4S)-bicyclo[2.1.1]hexane-1,4-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate 82.
Step 1: Following general procedure A using bicyclo[2.1.1]hexane-1,4-dicarboxylic acid 80 (30 mg, 0.18 mmol), oxalyl chloride (0.0303 mL, 0.353 mmol), THF (4 mL) and 1 drop of DMF, 81 was prepared as an off white solid (39 mg, quant.). Crude 81 was used immediately in the next step as is.
Step 2: Following general procedure B using 6 (106 mg, 0.338 mmol), 81 (35 mg, 0.17 mmol), pyridine (0.0545 mL, 0.676 mmol) and THF (8 mL), and purification using medium pressure reverse phase C18 chromatography (Gradient: 10% to 75% acetonitrile in water with 0.02% TFA in each phase), 82 (52 mg, 45%) was produced as a white solid. LC-MS (Protocol B): m/z 685.2 [M+H]+, retention time = 2.16 minutes. 1H NMR (400 MHz, DMSO-d6): δ 8.23 (s, 2H), 8.03-7.99 (d, 2H), 7.92-7.87 (d, 2H), 7.63-7.57 (t, 2H), 7.51-7.44 (t, 2H), 4.47-4.25 (m, 6H), 4.13-3.98 (m, 4H), 2.47 (s, 6H), 2.27-2.07 (m, 8H).
Preparation of bicyclo[2.2.2]octane-1,4-diylbis[carbonyl(1S)-1-(chloromethyl)-8-methyl-1,6-dihydropyrrolo[3,2-e]indole-3,5(2H)-diyl] diacetate 85.
Step 1: Following general procedure A using bicyclo[2.2.2]octane-1,4-dicarboxylic acid 83 (16 mg, 0.081 mmol), oxalyl chloride (0.015 mL, 0.17 mmol), THF (5 mL) and 1 drop of DMF, 84 was prepared as an off white solid (19 mg, quant.). Crude 84 was used immediately in the next step as is.
Step 2: Following general procedure B using 189 (50.9 mg, 0.145 mmol), 84 (17.0 mg, 0.0723 mmol), pyridine (0.0233 mL, 0.289 mmol) and THF (4 mL), and purification using medium pressure reverse phase C18 chromatography (Gradient: 10% to 75% acetonitrile in water with 0.02% TFA in each phase), 85 (21.6 mg, 32%) was produced as a white solid. LC-MS (Protocol B): m/z 719.3 [M+H]+, retention time = 2.27 minutes. 1H NMR (400 MHz, DMSO-d6): δ 11.00 (s, 2H), 7.79 (s, 2H), 7.19 (s, 2H), 4.68-4.62 (m, 2H), 4.27-4.19 (m, 2H), 4.06-3.94 (m, 4H), 3.65-3.57 (m, 2H), 2.42-2.32 (m, 12H), 2.12-1.96 (m, 12H).
Preparation of bicyclo[2.2.1]heptane-1,4-diylbis[carbonyl(1S)-1-(chloromethyl)-8-methyl-1,6-dihydropyrrolo[3,2-e]indole-3,5(2H)-diyl] diacetate 88.
Step 1: Following general procedure A using bicyclo[2.2.1]heptane-1,4-dicarboxylic acid 86 (16 mg, 0.087 mmol), oxalyl chloride (0.016 mL, 0.18 mmol), THF (5 mL) and 1 drop of DMF, 87 was prepared as an off white solid (19 mg, 99%). Crude 87 was used immediately in the next step as is.
Step 2: Following general procedure B using 189 (54.1 mg, 0.154 mmol), 87 (17.0 mg, 0.0769 mmol), pyridine (0.0248 mL, 0.308 mmol) and THF (4 mL), and purification using medium pressure reverse phase C18 chromatography (Gradient: 10% to 75% acetonitrile in water with 0.02% TFA in each phase), 88 (13.6 mg, 19%) was produced as an light brown solid. LC-MS (Protocol B): m/z 705.3 [M+H]+, retention time = 2.32 minutes. 1H NMR (400 MHz, DMSO-d6): δ 11.02 (s, 2H), 7.82 (s, 2H), 7.19 (s, 2H), 4.50-4.45 (d, 2H), 4.26-4.16 (m, 2H), 4.10-4.02 (m, 2H), 3.98-3.92 (m, 2H), 3.65-3.58 (m, 2H), 2.41-2.33 (m, 12H), 2.22-2.03 (m, 10H).
Preparation of bicyclo[1.1.1]pentane-1,3-diylbis[carbonyl(1S)-1-(chloromethyl)-8-methyl-1,6-dihydropyrrolo[3,2-e]indole-3,5(2H)-diyl] diacetate 91.
Step 1: Following general procedure A using bicyclo[1.1.1]pentane-1,3-dicarboxylic acid 89 (31 mg, 0.20 mmol), oxalyl chloride (0.025 mL, 0.40 mmol), THF (8 mL) and 1 drop of DMF, 90 was prepared as an off white solid (40 mg, quant.). Crude 90 was used immediately in the next step as is.
Step 2: Following general procedure B using 189 (142 mg, 0.404 mmol), 90 (39 mg, 0.20 mmol), pyridine (0.065 mL, 0.81 mmol) and THF (12 mL), and purification using medium pressure reverse phase C18 chromatography (Gradient: 10% to 75% acetonitrile in water with 0.02% TFA in each phase), 91 (45.5 mg, 30%) was produced as an light gray solid. LC-MS (Protocol B): m/z 677.2 [M+H]+, retention time = 1.89 minutes. 1H NMR (400 MHz, DMSO-d6): δ 11.04 (s, 2H), 7.78 (s, 2H), 7.20 (s, 2H), 4.47-4.39 (m, 2H), 4.36-4.26 (m, 2H), 4.18-4.08 (m, 2H), 4.03-3.94 (m, 2H), 3.77-3.66 (m, 2H), 2.56 (s, 6H), 2.41-2.31 (m, 12H).
Preparation of (8S)-6-[(3-{[(1S)-5-(acetyloxy)-1-(chloromethyl)-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)acetyl]-8-(chloromethyl)-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl acetate 97.
Step 1: Following general procedure A using 3-(2-tert-butoxy-2-oxoethyl)bicyclo[1.1.1]pentane-1-carboxylic acid 92 [prepared as described in Bioorg. Med. Chem. 2009, 17, 242-250.] (90 mg, 0.40 mmol), oxalyl chloride (0.041 mL, 0.477 mmol), THF (8 mL) and 1 drop of DMF, 93 was prepared as an off white solid (103 mg, quant.). Crude 93 was used immediately in the next step as is.
Step 2: Following general procedure B using 11 (141 mg, 0.40 mmol), 93 (98 mg, 0.40 mmol), triethylamine (0.168 mL, 1.20 mmol) and THF (30 mL), and purification using silica gel chromatography (Gradient: 0% to 35% acetone in heptane), 94 (188 mg, 96%) was produced as an off white solid. LC-MS (Protocol B): m/z 487.2 [M+H]+, retention time = 2.04 minutes.
Step 3: To a stirring solution of 94 (184 mg, 0.378 mmol), in 8 mL of dichloromethane, TFA (4.0 mL, 52 mmol) was added. The reaction was allowed to stir at room temperature for ∼45 minutes. Reaction was concentrated in vacuo and placed underneath high vacuum producing 95 (164 mg, 80%) as a light gray solid, which was used in the next step without purification. LC-MS (Protocol B): m/z 431.7 [M+H]+, retention time = 1.39 minutes.
Step 4: Following general procedure A using 95 (55 mg, 0.101 mmol), oxalyl chloride (0.0104 mL, 0.121 mmol), THF (3 mL), dichloromethane (1 mL) and 1 drop of DMF, 96 was prepared as an off white solid (46 mg, quant.). Crude 96 was used immediately in the next step as is.
Step 5: Following general procedure B using 11 (31.3 mg, 0.089 mmol), 96 (40 mg, 0.089 mmol), pyridine (0.0215 mL, 0.267 mmol) and THF (8.0 mL), and purification using medium pressure reverse phase C18 chromatography (Gradient: 10% to 70% acetonitrile in water with 0.02% TFA in each phase), 97 (10.1 mg, 12%) was produced as an light gray solid. LC-MS (Protocol B): m/z 691.3 [M+H]+, retention time = 1.93 minutes. 1H NMR (400 MHz, DMSO-d6): δ 11.02 (s, 2H), 7.86-7.72 (d, 2H), 7.19 (s, 2H), 4.43-4.36 (m, 1H), 4.28-4.14 (m, 3H), 4.13-4.05 (m, 2H), 3.96-3.89 (m, 2H), 3.68-3.60 (m, 2H), 2.89-2.82 (m, 2H), 2.73-2.66 (m, 2H), 2.40-2.30 (m, 12H), 2.24-2.15 (m, 6H).
Preparation of tert-butyl (1S)-8-amino-5-(benzyloxy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3-carboxylate 99 and tert-butyl (1R)-8-amino-5-(benzyloxy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3-carboxylate 98.
Preparation of tert-butyl (1R)-8-(acetylamino)-5-(acetyloxy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3-carboxylate 102
Step 1:To a stirring solution of 99 (60 mg, 0.14 mmol) in 6 mL of dichloromethane at 0ºC, acetyl chloride (0.015 mL, 0.206 mmol) was added followed by triethylamine (0.029 mL, 0.206 mmol). The reaction was allowed to stir at 0ºC for ∼1 minute and then allowed to warm to room temperature. The reaction was allowed to stir at room temperature for ∼25 minutes. Reaction was diluted with dichloromethane and then transferred to a separatory funnel. The organic layer was separated, and then washed with 1 N HCI, and then water. The organic layer was dried over sodium sulfate, filtered and then concentrated in vacuo producing an orange solid. To a stirring solution of crude material in 4 mL of THF at 0ºC, Pd. 10 wt.% on carbon (45 mg) was added followed by a solution of 25% ammonium formate aq. (0.3 mL). The reaction was allowed to stir at 0ºC for ∼4 hours. Reaction was diluted with THF and ether. Sodium sulfate was added and the reaction was filtered through a thin pad of celite. Organics where concentrated in vacuo and placed underneath high vacuum producing a light brown solid. To a stirring solution of crude material in 6 mL of dichloromethane at 0ºC, acetyl chloride (0.015 mL, 0.211 mmol) was added followed by pyridine (0.017 mL, 0.211 mmol). The reaction was allowed to stir at 0ºC for ∼1 minute and then allowed to warm to room temperature. The reaction was allowed to stir at room temperature for ∼25 minutes. Reaction was concentrated in vacuo. Silica gel chromatography was then preformed (Gradient: 0% to 45% acetone in heptane). Appropriate test tubes where combined and concentrated in vacuo yielding 101 (49 mg, 80%, 3 steps) as an off white solid. LC-MS (Protocol B): m/z 455.9 [M+Na]+23, retention time = 2.05 minutes.
Step 2: To a round bottom flask containing 101 (45 mg, 0.10 mmol), 4M HCl in dioxane (6.0 mL, 24 mmol) was added. The reaction was allowed to stir at room temperature for ∼2 hours. Reaction was concentrated in vacuo and placed underneath high vacuum producing 102 (42 mg, quant.) as a dark brown solid. LC-MS (Protocol B): m/z 333.0 [M+H]+, retention time = 1.65 minutes.
Preparation of tert-butyl (1S)-8-(acetylamino)-5-(acetyloxy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3-carboxylate 103
Step 1: To a stirring solution of 99 (65 mg, 0.15 mmol) in 6 mL of dichloromethane at 0ºC, acetyl chloride (0.016 mL, 0.22 mmol) was added followed by triethylamine (0.031 mL, 0.22 mmol). The reaction was allowed to stir at 0ºC for ∼1 minute and then allowed to warm to room temperature. The reaction was allowed to stir at room temperature for ∼25 minutes. Reaction was diluted with dichloromethane and then transferred to a separatory funnel. The organic layer was separated, and then washed with 1 N HCI, and then water. The organic layer was dried over sodium sulfate, filtered and then concentrated in vacuo producing an orange solid. To a stirring solution of crude material in 4 mL of THF at 0ºC, Pd. 10 wt.% on carbon (45 mg) was added followed by a solution of 25% ammonium formate aq. (0.5 mL). The reaction was allowed to stir at 0ºC for ∼4 hours. Reaction was diluted with THF and ether. Sodium sulfate was added and the reaction was filtered through a thin pad of celite. Organics where concentrated in vacuo and placed underneath high vacuum producing a light brown solid. To a stirring solution of crude material in 8 mL of dichloromethane at 0ºC, acetyl chloride (0.015 mL, 0.21 mmol) was added followed by pyridine (0.017 mL, 0.21 mmol). The reaction was allowed to stir at 0ºC for ∼1 minute and then allowed to warm to room temperature. The reaction was allowed to stir at room temperature for ∼25 minutes. Reaction was concentrated in vacuo. Silica gel chromatography was then preformed (Gradient: 0% to 25% acetone in heptane). Appropriate test tubes where combined and concentrated in vacuo yielding 103 (39.1 mg, 63%, 3 steps) as a white solid. LC-MS (Protocol B): m/z 455.0 [M+Na]+23, retention time = 2.00 minutes.
Step 2: To a round bottom flask containing 103 (37 mg, 0.085 mmol), 4M HCl in dioxane (4.0 mL, 16 mmol) was added. The reaction was allowed to stir at room temperature for ∼2 hours. Reaction was concentrated in vacuo and placed underneath high vacuum producing 104 (34 mg, quant.) as a green solid. LC-MS (Protocol B): m/z 333.0 [M+H]+, retention time = 1.41 minutes.
Preparation of (1S)-3-{[3-(chlorocarbonyl)bicyclo[1.1.1]pent-1-yl]carbonyl}-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl 107.
Step 1: Following general procedure A using 3-(tert-butoxycarbonyl)bicyclo[1.1.1]pentane-1-carboxylic acid 105 (212 mg, 1.0 mmol), oxalyl chloride (0.094 mL, 1.10 mmol), THF (3 mL), dichloromethane (6 m) and 1 drop of DMF, 105 was prepared as an off white solid (235 mg, quant.). Crude 105 was used immediately in the next step as is.
Step 2: Following general procedure B using 11 (311 mg, 0.997 mmol), 105 (230 mg, 0.997 mmol), triethylamine (0.292 mL, 2.09 mmol) and THF (20 mL), and purification using silica gel chromatography (Gradient: 10% to 75% acetone in heptane). Appropriate test tubes where combined and concentrated in vacuo producing a white solid. To a stirring solution of crude material in 10 mL of dichloromethane, TFA (5.0 mL, 65 mmol) was added. The reaction was allowed to stir at room temperature for ∼90 minutes. Reaction was concentrated in vacuo. Material was dissolved with dichloromethane, transferred to a separatory funnel and then washed with 1N HCl aq., brine, and water. Organic layer was dried over sodium sulfate, filtered, and then concentrated in vacuo before being placed underneath high vacuum producing a white solid. Using this crude material and following general procedure A with oxalyl chloride (0.010 mL, 0.121 mmol), THF (4 mL), dichloromethane (2 mL) and 1 drop of DMF, 107 was prepared as a white solid (52 mg, 49%, 3 steps). Crude 107 was used immediately in the next step as is.
Preparation of (1R)-8-(acetylamino)-3-[(3-{[(1S)-5-(acetyloxy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-5-yl acetate 108
Preparation of (1S)-3-[(3-{[(1S)-8-(acetylamino)-5-(acetyloxy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl acetate 109
Preparation of Reference Example Acetic acid (S)-3-[5-((S)-5-amino-l-chloromethyl-1,2-dihydro-benzo[e]indole-3-carbonyl)-thiophene-2-carbonyl]-1-chloromethyl-2,3-dihydro-1H-benzo[e]indol-5-yl ester 115
Step 1: In a round bottom flask purged with N2, containing Thiophene-2,5-dicarboxylic acid mono-tert-butyl ester (152 mg, 0.66 mmol) in 5 mL of anhydrous DCM was added Oxalyl Chloride (0.66 mmol, 0.066 mL). To this solution was added 1 drop of N, N-dimethylformamide. The reaction mixture was stirred for 3 hours and concentrated in vacuo to a crud residue. The residue was then added to a round bottom flask containing 110 (200 mg, 0.66 mmol) in 15 mL of anhydrous dichloromethane. The reaction was stirred for 2 hours. The residue was diluted with 15 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCl (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated to a crude solid. Silica chromatography was then preformed (Gradient: 0%-100% Ethyl Acetate in Heptanes) producing 111 (185 mg, 58%) as a yellow solid. LC-MS: m/z 473 [M+H+], retention time = 2.25 minutes.
Step 2 111 was added 10 mL of 25 % trifluoro acedic acid in dichloromethane. The reaction was stirred for 30 min. The crude reaction mixture was concentrated in vacuo to afford 112 as a yellow solid. LC-MS: m/z 416 [M+H+], retention time = 1.65 minutes.
Step 3: In a round bottom flask purged with N2, containing 112 (100 mg, 0.24 mmol) in 5 mL of anhydrous DCM was added Oxalyl Chloride (0.24 mmol, 0.02 mL). To this solution was added 1 drop of N, N-dimethylformamide. The reaction mixture was stirred for 3 hours and concentrated in vacuo to afford 113 as a yellow solid (100 mg, 0.24 mmol, quantitative). LCMS, taken in methanol: m/z 282. 0 [M+H+, for methanolysis product]. retention time = 1.95 minutes.
Step 4:. In a round bottom flask containing 5, 28mg, 0.092 mmol) in 5 mL of dichloromethane was added 113 (40 mg, 0.092 mmol). Triethylamine (0.088 mL) was then added and the system was stirred for 1 hour at room temperature. The crude reaction mixture was concentrated in vacuo and taken back up in 25 mL of dichloromethane and transferred to a separation funnel. Washed organic layer with 1M HCl (3x), Water (3x), and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude solid. Silica chromatography was then preformed (Gradient: 0%-100% Ethyl Acetate in heptanes) producing 114 (40 mg, 64%) as a yellow solid. LC-MS: m/z 674 [M+H+], retention time = 2.25 minutes.
Step 5 In a Parr flask containing 114 (30 mg, .044 mmol) in 15 mL of anhydrous tetrahydrofuran was added Platinum Oxide (5 mg, 0.02 mmol). The system was capped with a rubber septum and hydrogenation occurred under H2 at 50 Psi for 3 hours. After 3 hours hours the Parr flask was purged with N2 and the crude reaction was filtered thru a plug of celite using ethyl acetate. The filtrate containing the desired crude product was then concentrated. Silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing 115 (15 mg, 50%) as a yellow solid. LC-MS: m/z 644 [M+H+], retention time = 2.06 minutes.
Preparation of Reference Example ((S)-1-Chloromethyl-5-hydroxy-1,2-dihydro-benzo[e]indol-3-yl)-[5-((S)-1-chloromethyl-5-hydroxy-8-methyl-1,6-dihydro-2H-pyrrolo[3,2-e]indole-3-carbonyl)-thiophen-2-yl]-methanone 117.
Preparation of Reference Example (S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl )thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl methyl carbonate 119
Preparation of Reference Example (S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl )thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl (2-(dimethylamino)ethyl)carbamate 123
Step1: A solution of 4-nitrophenyl chloroformate (164 mg, 0.78 mmol) in THF (1 mL) was added to a solution of 3 (200 mg, 0.60 mmol) in THF (6 mL) and DIPEA (0.315 mL, 1.8 mmol) at 0°C, and the mixture was stirred at room temperature for 2 h. Concentrated and the residue was treated with EA and water, extracted with EA, washed with water and brine. Dried over MgSO4, the solvent was removed in vacuo to give the PNP carbonate 120 as yellow form (300 mg, 100%). LC-MS: m/z 399.0 [M + H], retention time = 2.37 min.
Step 2: N,N-dimethylethylenediamine (35 mg, 0.4 mmol) was added to a solution of the above PNP carbonate 120 (100 mg, 0.2 mmol) in DMA (3 mL), followed by lutidine (0.07 mL, 0.6 mmol) and HOAt (14 mg, 0.1 mmol). The mixture was stirred at room temperature for 4 h. the mixture was subjected to purification by Gilson HPLC (ACN/water, 0.02% TFA) to give the carbamate (S)-tert-butyl 1-(chloromethyl)-5-(((2-(dimethylamino)ethyl)carbamoyl)oxy)-1H-benzo[e]indole-3(2H)-carboxylate 121 as yellow glass (86 mg, 77%). LC-MS: m/z 448.1 [M + H], retention time = 0.70 min.
Step 3: The above compound 121 (38 mg, 0.067 mmol) was treated with TFA (0.5 mL) and CH2Cl2 (2 mL) for 2 h, then concentrated in vacuo to give the corresponding deprotected amine 122 which was dissolved in DMA (3 mL). To this solution, it was added (S)-5-(1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carboxylic acid [58] (26 mg, 0.067 mmol), followed by EDCI (27 mg, 0.14 mmol), and the mixture was stirred at room temperature for overnight. The crude was purified by Gilson HPLC (ACN/water, 0.02% TFA) to give 123 (4.5 mg, 8%). LC-MS: m/z 717.4 [M + H], retention time = 1.38 min.1H NMR (400 MHz, CDCl3), δ 8.24 (d), 8.0 (d), 7.75 (d), 7.64 (s), 7.55 - 7.34 (m), 4.62 (m), 4.13 (t), 4.05 (t), 3.94 (t), 3.64 (t), 3.57 - 3.45 (m), 3.33 (s), 3.25 (s), 2.89 (s).
Preparation of Reference Example (S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl )thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl methyl(2-(methylamino)ethyl)carbamate 126
Step 1: To the above solution of 120, N,N,N-trimethylethylenediamine (222 mg, 0.28 mmol) was added, followed by lutidine (0.37 mL, 3.2 mmol) and HOAt (29 mg, 0.2 mmol). The mixture was stirred at room temperature for 1 h. The mixture was concentrated, and the residue was diluted with ethyl acetate, washed with brine, dried over MgSO4. The crude reaction product was purified by ISCO using MeOH/DCM (0 - 20%) to give the 124 as white foam (245 mg, 50%). LC-MS: m/z 462.2 [M + H], retention time = 1.45 min.
Step 2: The above compound 124 (40 mg, 0.087 mmol) was treated with pre-cooled TFA (1 mL) at 0 °C for 10 min. TFA was removed under vacuo to give the corresponding deprotected amine 125, which was dissolved in DMF (3 mL). To this solution, it was added (S)-5-(1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carboxylic acid [58] (34 mg, 0.087 mmol), followed by EDCI (35 mg, 0.17 mmol), and the mixture was stirred at room temperature for overnight. The crude was purified by Gilson HPLC (ACN/water, 0.02% TFA) to give the product 126 as off-white solid (25 mg, 39%). LC-MS: m/z 731.1 [M + H], retention time = 1.71 min.1H NMR (400 MHz, DMSO-d6), δ 10.49 (s), 8.26 (s), 8.14 (d), 7.98 (d), 7.88 (d), 7.66 (t), 7.77 (t), 7.40 (t), 4.89 (t), 4.78 (t), 4.55 (d), 4.43 (d), 4.23 (s), 4.08 - 3.91 (m), 3.73 (s), 3.50 (s), 3.40 (s), 3.26 (s), 2.89 (m).
Preparation of bicyclo[1.1.1]pentane-1,3-diylbis{[(1S)-5-amino-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]methanone} 130
Step 1: In a round bottom flask equipped with a stir bar Fluorenylmethyloxycarbonyl chloride (560 mg, 2,1 mmol) was added 5 mL of anhydrous DCM and purged the system with Nitrogen. 127 (800 mg, 2.1 mmol) was added followed by TEA (0.3 mL, 2.1 mmol). The system was let to stir for 5 hours. The crude reaction mixture was taken up in Ethyl Acetate and transferred to a separatory funnel. Washed organic layer with 1M HCl (3x), Water (3x), Sodium Bicarbonate and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude residue. The crude product was purified by silica gel chromatography (Gradient: 0% to 100% Ethyl Acetate in Heptane) to give 128 as a yellow solid (1.096 g, 91%). LC-MS (Protocol B): m/z 455 [M-Boc]+, retention time = 2.58 minutes.
Step 2: In a round-bottom flask equipped with a stir bar containing 128 (1000 mg, 1.96 mmol) was added 15 mL of 25% TFA in DCM. The solution was stirred for 30 mins. The reaction mixture was concentrated under vacuum and taken up in 50% DCM and Heptane and concentrated under vacuum. This was repeated 3 times (to remove excess TFA) to give a white solid upon concentrating. This white solid was added to a stirring solution of bicyclo[1.1.1]pentane-1,3-dicarbonyl dichloride 90 in 10 mL of anhydrous DCM. The reaction was stirred for 1 hour and concentrated to a crude glass. The crude reaction mixture was taken up in Ethyl Acetate and transferred to a separatory funnel. Washed organic layer with 1M HCl (3x), Water (3x), Sodium Bicarbonate and Brine (2x). Dried organic layer over Sodium Sulfate, filtered and concentrated the filtrate to a crude residue. The crude product was purified by silica gel chromatography (Gradient: 0% to 100% Ethyl Acetate in Heptane) to 129 as a yellow solid (250 mg, 12%). LC-MS (Protocol B): m/z 1030.7 [M-H]-, retention time = 2.29 minutes.
Step 3: In a round-bottom flask equipped with a stir bar containing of bis(9H-fluoren-9-ylmethyl) (bicyclo[1.1.1]pentane-1,3-diylbis{carbonyl[(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl]})biscarbamate 129 (20 mg, 0.19 mmol) was added 10 mL of 1:1 DCM in DEA. The solution was stirred for 3 hours. The reaction mixture was concentrated under vacuum and taken up in 50% DCM in Heptane and concentrated under vacuum. This was repeated 3 times (to remove escess DEA) to give a white solid upon concentrating. The crude product was purified by silica gel chromatography (Gradient: 0% to 10% Methanol in DCM) to give 130 as a yellow solid (4 mg, 30%). LC-MS (Protocol B): m/z 585.1 [M+H]+, retention time = 1.99 minutes.
Preparation of (1S)-1-(chloromethyl)-3-[(4-{[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[2.2.1]hept-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl acetate 134.
Step 1: Following general procedure A using 4-(methoxycarbonyl)bicyclo[2.2.1]heptane-1-carboxylic acid 131 (75 mg, 0.38 mmol), oxalyl chloride (0.032 mL, 0.378 mmol), THF (1.5 mL), dichloromethane (1.5) and 1 drop of DMF, 132 was prepared as a white oil and solid mix (85 mg, quant.). Crude 132 was used immediately in the next step as is.
Step 2: Following general procedure B using 2 (125 mg, 0.346 mmol), 132 (75 mg, 0.35 mmol), pyridine (0.112 mL, 1.38 mmol), dichloromethane (2 mL) and THF (6 mL), and purification using silica gel chromatography (Gradient: 0% to 25% acetone in heptane) appropriate test tubes where combined and concentrated in vacuo to produce a white solid. To a stirring solution of crude material in 6 mL of THF, lithium hydroxide (52.9 mg, 2.21 mmol) dissolved in 1.5 mL of water was added. The reaction was allowed to stir at room temperature for ∼3.5 hours. The reaction was concentrated to a smaller volume, transferred to a separatory funnel, and diluted with dichloromethane. The reaction was washed with 1N HCI. The aq. layer was washed once with dichloromethane. The organic layers where combined, washed with brine, water, dried over sodium sulfate, filtered, and then concentrated in vacuo before being placed underneath high vacuum. Following general procedure A using crude material, oxalyl chloride (0.024 mL, 0.281 mmol), THF (4.0 mL), dichloromethane (4.0 mL) and 1 drop of DMF, 133 was prepared as a white oil and solid mix (85 mg, quant.). Crude 133 was used immediately in the next step as is.
Step 3: Following general procedure B using 19a (79.9 mg, 0.256 mmol), 133 (130 mg, 0.256 mmol), pyridine (0.103 mL, 1.28 mmol), and THF (6 mL) a crude light pink solid was produced after concentrating this reaction in vacuo. To a stirring solution of crude material in 3 mL of DMF and 1 mL of THF at 0°C, Pd. 10 wt.% on carbon (100 mg) was added followed by a solution of 25% ammonium formate aq. (0.4 mL). The reaction was allowed to stir at 0ºC for ∼90 minutes. Reaction was filtered through a C18 plug which was washed with a 70%/30% solution of acetonitrile and water with 0.02% TFA in each phase. Material was reduced down using a genevac producing 134 (54 mg, 32%, 2 steps) as a light gray solid. LC-MS (Protocol B): m/z 657.1 [M+H]+, retention time = 2.10 minutes. 1H NMR (400 MHz, DMSO-d6): δ 10.32 (s, 1H), 8.24 (s, 1H), 8.11-8.07 (s, 1H), 8.02-7.96 (m, 2H), 7.91-7.86 (d, 1H), 7.83-7.78 (d, 1H), 7.63-7.57 (m, 1H), 7.52-7.45 (m, 2H), 7.36-7.30 (m, 1H), 4.54-4.38 (m, 3H), 4.35-4.27 (m, 2H), 4.16-4.05 (m, 2H), 4.02-3.90 (m, 2H), 3.80-3.73 (m, 1H), 2.47 (s, 3H), 2.26-2.03 (m, 10H).
Preparation of (3bR,4aS,3b'R,4a'S)-6,6'-(bicyclo[1.1.1]pentane-1,3-diyldicarbonyl)bis(3-methyl-4,4a,5,6-tetrahydrocyclopropa[c]pyrrolo[3,2-e]indol-8(1H)-one).
Preparation of Reference Example (1aS,9bR,1a'S,9b'R)-3,3'-(thiene-2,5-diyldicarbonyl)bis(1,1a,2,3-tetrahydro-5H-benzo[e]cyclopropa[c]indol-5-one).
Preparation of (1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl methyl 2,3,4-tri-O-acetyl-beta-D-glucopyranosiduronate 141.
| Table 1 - Additional Payloads and Reference Payloads | |||
| ID | Structure | Method of synthesis | M/S |
| 142 |
|
68 | 759.5 [M+H]+ |
| 143 |
|
68 | 747.4 [M+H]+ |
| 144 |
|
68 | 689.4 [M+H]+ |
| 145 |
|
141 | 765.1 [M+H]+ |
| 146 |
|
60 | 659.2 [M+H]+ |
| 147 |
|
60 | 593.2 [M+H]+ |
| 148 |
|
141 | 893.2 [M+H]+ |
| 149 |
|
68 | 893.2 [M+H]+ |
| 151 |
|
141 | 919.2 [M+H]+ |
| 152 |
|
68 | 671.2 [M+H]+ |
| 153 |
|
141 | 933.2 [M+H]+ |
| 154 |
|
60 | 590.2 [M+H]+ |
| 155 |
|
68 | 687.1 [M+H]+ |
| 156 |
|
68 | 687.2 [M+H]+ |
| 157 |
|
68 | 701.2 [M+H]+ |
| 158 |
|
68 | 700.6 [M+H]+ |
| 159 |
|
68 | 713.2 [M+H]+ |
| 160 |
|
68 | 715.1 [M+H]+ |
| 161 |
|
65 | 666.1 [M+H]+ |
| 162 |
|
134 | 643.2 [M+H]+ |
| 163 |
|
65 | 667.1 [M+H]+ |
| 164 |
|
141 | 779.1 [M+H]+ |
| 165 |
|
60 | 570.2 [M+H]+ |
| 166 |
|
135 | 506.2 [M+H]+ |
| 167 |
|
135 | 506.2 [M+H]+ |
| 168 |
|
68 | 659.2 [M+H]+ |
| 169 |
|
60 | 792.2 [M+H]+ |
| 170 |
|
134 | 645.0 [M+H]+ |
| 171 |
|
196 | 683.1 [M+H]+ |
| 172 |
|
60 | 786.4 [M+H]+ |
| 173 |
|
184 | 724.3 [M+H]+ |
| 174 |
|
60 | 604.4 [M+H]+ |
| 175 |
|
134 | 657.2 [M+H]+ |
| 176 |
|
68 | 681.2 [M+H]+ |
| 177 |
|
68 | 709.2 [M+H]+ |
| 178 |
|
68 | 754.4 [M+H]+ |
| 179 |
|
141 | 777.3 [M+H]+ |
| 180 |
|
68 | 590.5 [M+H]+ |
| 181 |
|
68 | 707.3 [M+H]+ |
| Table 2 - Additional Payloads and Reference Payloads, IUPAC names | |
| 142 | 3,4-dihydro-2H-thieno[3,4-b][1,4]dioxepine-6,8-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
| 143 | (3,4-dimethoxythiene-2,5-diyl)bis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl]diacetate |
| 144 | 1,3,4-thiadiazole-2,5-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
| 145 | ((S)-1-(chloromethyl)-5-(((2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)-1,2-dihydro-3H-benzo[e]indol-3-yl)(5-((S)-1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophen-2-yl)methanone |
| 146 | 3,3'-thiene-2,5-diylbis{1-[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]propan-1-one} |
| 147 | bicyclo[1.1.1]pentane-1,3-diylbis{[(1S)-1-(chloromethyl)-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]methanone} |
| 148 | (2S,3S,4S,5R,6S)-6-(((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-((methyl(2-(methylamino)ethyl)carbamoyl)oxy)-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)-3,4,5-trihydroxytetrahydro-2H-pyran-2-carboxylic acid |
| 149 | (1S)-3-[(5-{[(2-{[(1S)-5-(acetyloxy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}-1H-indol-5-yl)carbamoyl]amino}-1H-indol-2-yl)carbonyl]-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-5 -yl acetate |
| 150 | thiene-2,5-diylbis{[(1S)-1-(chloromethyl)-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]methanone} |
| 151 | (2S,3R,4S,5S,6S)-2-(((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)-6-(methoxycarbonyl)tetrahydro-2H-pyran-3,4,5-triyl triacetate |
| 152 | bicyclo[1.1.1]pentane-1,3-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl]diacetate |
| 153 | (2R,3S,4S,5R,6S)-2-(acetoxymethyl)-6-(((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)tetrahydro-2H-pyran-3,4,5-triyl triacetate |
| 154 | [(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl](3-{[(1S)-1-(chloromethyl)-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)methanone |
| 155 | thiene-2,5-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
| 156 | cyclobutane-1,1-diylbis[(1-oxoethane-2,1-diyl)(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl]diacetate |
| 157 | cyclopentane-1,1-diylbis[(1-oxoethane-2,1-diyl)(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
| 158 | bicyclo[1.1.1]pentane-1,3-diylbis[(1-oxoethane-2,1-diyl)(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
| 159 | bicyclo[2.2.2]octane-1,4-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl]diacetate |
| 160 | thiene-2,5-diylbis[(1-oxoethane-2,1-diyl)(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl]diacetate |
| 161 | (1S)-3-[(3-{[(1S)-5-amino-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl dihydrogen phosphate |
| 162 | (1S)-1-(chloromethyl)-3-[(3-{2-[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]-2-oxoethyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl acetate |
| 163 | (1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl dihydrogen phosphate |
| 164 | (2S,3S,4S,5R,6S)-6-(((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-hydroxy-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)-3,4,5-trihydroxytetrahydro-2H-pyran-2-carboxylic acid |
| 165 | 2,2'-iminobis{1-[(1S)-1-(chloromethyl)-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]ethanone} |
| 166 | 3-amino-1,5-bis[(1aS,9bR)-5-oxo-1a,2-dihydro-1H-benzo[e]cyclopropa[c]indol-3(5H)-yl]pentane-1,5-dione |
| 167 | (2S)-2-amino-1,5-bis[(1aS,9bR)-5-oxo-1a,2-dihydro-1H-benzo[e]cyclopropa[c]indol-3(5H)-yl]pentane-1,5-dione |
| 168 | cis-cyclobutane-1,3-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
| 169 | 9H-fluoren-9-ylmethyl bis{2-[(1S)-1-(chloromethyl)-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]-2-oxoethyl}carbamate |
| 170 | (1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl acetate |
| 171 | (1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl dihydrogen phosphate |
| 172 | 9H-fluoren-9-ylmethyl bis{2-[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]-2-oxoethyl}carbamate |
| 173 | iminobis[(1-oxoethane-2,1-diyl)(1S)-1-(chloronnethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] bis[dihydrogen (phosphate)] |
| 174 | (3R,5S)-piperidine-3,5-diylbis{[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]methanone} |
| 175 | (1S)-1-(chloromethyl)-3-{[(1S,5S)-5-{[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[3.1.1]hept-1-yl]carbonyl}-2,3-dihydro-1H-benzo[e]indol-5-ylacetate |
| 176 | benzene-1,4-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
| 177 | benzene-1,3-diylbis[(1-oxoethane-2,1-diyl)(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl]diacetate |
| 178 | (5-nitrobenzene-1,3-diyl)bis[(1-oxoethane-2,1-diyl)(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
| 179 | (1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)acetyl]-2,3-dihydro-1H-benzo[e]indol-5-yl beta-D-glucopyranosiduronic a cid |
| 180 | [(1S)-5-amino-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl](3-{[(1S)-1-(chloromethyl)-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)methanone |
| 181 | pentacyclo[4.2.0.0∼2,5∼.0∼,8∼.0∼4, 7∼]octane-1,4-diylbis[carbonyl(1S)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indole-3,5-diyl] diacetate |
Preparation of Reference Example 4-((23S,26S)-1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosanamido)benzyl bis(2-((S)-1-(chloromethyl)-5-(phosphonooxy)-1H-benzo[e]indol-3(2H)-yl)-2-oxoethyl)carbamate (186)
Step 1:. A stirring solution of 51 (120 mg, 0.124 mmol) in 10 mL of tetrahydrofuran under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (106 mg, 0.298 mmol) was then added followed by the slow drop wise addition of 1 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 5 hours. The reaction was then filtered through a pad of celite and the filtrate was then concentrated in vacuo. Silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing 182 (35 mg, 36%) as a pale white solid. LC-MS: m/z 786 [M+H+], retention time = 2.22 minutes.
Step 2: To a stirring solution of 182 (274 mg, 0.348 mmol) in 10 mL of THF and 10 mL of acetonitrile, carbon tetrachloride (2.04 mL, 21.0 mmol) and Hunig's base (1.12 mL, 6.45 mmol) was added dibenzylphosphite (0.9 mL, 4.32 mmol) and DMAP (catalytic). The reaction was allowed to stir at room temperature for ∼20 minutes. The crude reaction mixture was concentrated in vacuo and silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing 183 (239 mg, 52%) as a pale white solid. LC-MS: m/z 1308 [M+H+], retention time = 2.70 minutes.
Step 3: In a round-bottom flask equipped with a stir bar containing 183 (200 mg, 0.153 mmol) was added 5 mL of dichloromethane and 5 mL of diethyl amine. The solution was stirred for 3 hours. The reaction mixture was concentrated in vacuo and taken up in 50% dichloromethane and heptane and concentrated in vacuo again. This was repeated 3 times. The crude residue was taken up in 10 mL of 25 % trifluoro acedic acid in dichloromethane followed by thiophenol (1 mL). The reaction was stirred at room temperature for two days. The crude reaction mixture was concentrated in vacuo and silica chromatography was then preformed (Gradient: 0%-100% ethyl acetate in heptanes) producing 184 (60 mg, 47%) as a pale white solid. LC-MS: m/z 724 [M+H+], retention time = 1.02 minutes.
Step 4: To a round bottom flask containing 184 (75 mg, 0.1 mmol) was added 10 mL DMA and the system was purged with N2. To this stirring solution was added 185 (99 mg, 0.104 mmol) followed by HOAt (416 mg, 0.104 mmol) and Hunigs base (1 drop). The system was stirred at 45 °C for 3 hours. The crude reaction mixture was concentrated in vacuo and reverse phase chromatography was then preformed producing 186 (34 mg, 21%) as a white solid. LC-MS: m/z 1546 [M+H+], retention time = 1.23 minutes.
Preparation of (S)-3-(5-(chlorocarbonyl)thiophene-2-carbonyl)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl acetate 191
Step 1: To a stirring solution of 5-(tert-butoxycarbonyl)thiophene-2-carboxylic acid (187) in 20 mL of THF at 0 °C, oxalyl chloride (0.677 mL, 7.88 mmol) was added followed by 1 drop of DMF. The reaction was allowed to stir at room temperature at 0 °C for ∼1 minute and then allowed to warm to room temperature. The reaction was allowed to stir at room temperature for ∼90 minutes. Reaction was reduced down and placed underneath high vacuum to produce 188 (1.67 g, quant.) as a white solid. Crude material was then immediately used in the next step.
Step 2: To a stirring solution mixture of 6 (1.54 g, 4.93 mmol) in 25 mL of THF at 0 °C, triethylamine(1.38 mL, 9.87 mmol) was added followed immediately by the addition of 188 (1.46 g, 5.92 mmol) dissolved in 25 mL of THF. The reaction was allowed to stir at 0 °C for ∼1 minute and then allowed to warm to room temperature while stirring. The reaction was then allowed to stir at room temperature for ∼45 minutes. Reaction was reduced down onto silica. Silica chromatography was then preformed (gradient: 0%-100% acetone in heptanes). Appropriate test tubes where concentrated and placed underneath high vacuum to produce 189 (2.24 g, 94%) as brown solid. LC-MS (Protocol B): m/z 486.3 [M+H]+, retention time = 2.19 minutes.
Step 3: 189 (144 mg, 0.3 mmol) was treated with pre-cooled TFA (3 mL) at 0°C for 30 min, then concentrated in vacuo to give the corresponding acid 190. LC-MS: m/z 430.3 [M + H], retention time = 1.59 min. 190 was dissolved in THF (3 mL), oxalyl chloride (0.2 mL, 2M in CH2Cl2, 0.4 mmol) was added at 0°C, followed by 2 drops of DMF (cat), the mixture was stirred at 0°C for 5 min, and then room temperature for 2 h. Concentrated in vacuo to give the 191 as yellow solid.
Preparation of (S)-dibenzyl (1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl) phosphate (193)
Step 1: To a stirring solution of 3 (889 mg, 2.66 mmol) in 20 mL of THF and 20 mL of acetonitrile, carbon tetrachloride (3.61 mL, 37.3 mmol) was added followed by Hunig's base (2.0 mL, 11.5 mmol), dibenzylphosphonate (3.65 mL, 16.5 mmol) and DMAP (65.1 mg, 0.533 mmol). The reaction was allowed to stir at room temperature for ∼20 minutes. The reaction was concentrated to a smaller volume, diluted with a few mLs of DMSO and then injected onto a 25g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 85% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 192 (839 mg, 53%) as a clear light brown oil/solid mix. LC-MS (Protocol B): m/z 595.3 [M+2H]+, retention time = 2.47 minutes.
Step 2: To a stirring solution of 192 (834 mg, 1.40 mmol) in 16 mL of dichloromethane, TFA (16 mL, 210 mmol) was added. The reaction was allowed to stir at room temperature for 1 minute and then immediately reduced down before being placed underneath high vacuum producing 193 (701 mg, quant.) as a green oil/solid mix. LC-MS (Protocol B): m/z 494.2 [M+H]+, retention time = 2.17 minutes.
Preparation of Reference Example (1S)-3-(5-((1S)-5-(((benzyloxy)(hydroxy)phosphoryl)oxy)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]in dole-3-carbonyl)thiophene-2-carbonyl)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl acetate [194] and (S)-3-(5-((S)-5-((bis(benzyloxy)phosphoryl)oxy)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indole-3-ca rbonyl)thiophene-2-carbonyl)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl acetate [195]
Preparation of Reference Example (1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(ch!oromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl 4-nitrophenyl carbonate (196).
Preparation of Reference Example 4-((S)-2-((S)-2-((tert-butoxycarbonyl)amino)-3-methylbutanamido)-5-ureidopentanamido)benzyl (2-(((((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-(phosphonooxy)-2,3-dihydro-1H-benzo[e]ind ole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)carbonyl)(2-methoxyet hyl)amino)ethyl)(methyl) carbamate [198]
Preparation of Reference Example 4-((26S,29S)-1-bromo-26-isopropyl-2,24,27-trioxo-29-(3-ureidopropyl)-6,9,12,15,18,21-hexaoxa-3,25 ,28-triazatriacontanamido)benzyl (2-(((((5)-1-(chloromethyl)-3-(5-((5)-1-(chloromethyl)-5-(phosphonooxy)-2,3-dihydro-1H-benzo[e]ind ole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)carbonyl)(2-methoxyet hyl)amino)ethyl)(methyl)carbamate [201]
Step 1: 198 (13 mg, 0.01 mmol) was treated with pre-cooled TFA (0°C, 2 mL) for 2 min, and concentrated in vacuo to give the product 199 as yellow solid (14 mg, TFA salt, 100%). LC-MS: m/z 1247.9 [M + H], retention time = 1.57 min. 1H NMR (400 MHz, DMF-d7), δ 10.13 (s), 8.65 (d), 8.45 (s), 8.17 (d), 7.95 - 7.85 (m), 7.65 -7.22 (m), 5.04 - 4.97 (m), 4.81 (dd), 4.56 (s), 4.33 (d), 4.07 - 3.94 (m), 3.73 - 3.64 (m), 3.50 (s), 3.55 - 3.09 (m), 2.95 -2.85 (m), 2.21 (dd), 1.76 (m), 1.62 (m), 1.46 (s), 0.99 (m).
Step 2: 199 (5 mg, 0.004 mmol) was added to a solution of perfluorophenyl 1-bromo-2-oxo-6,9,12,15,18,21-hexaoxa-3-azatetracosan-24-oate 200 (3.8 mg, 0.006 mmol) in DMF (0.5 mL), followed by DIPEA (0.003 mL, 0.016 mmol). The mixture was stirred at room temperature for 1 h. The crude was purified by Gilson HPLC using ACN/water (0.02% TFA) to give the product 201 as yellow solid (3 mg, 40%). LC-MS: m/z 1704.0 [M + H], retention time = 1.61 min.1H NMR (400 MHz, DMSO-d6), δ 9.88 (s), 8.30 (s), 8.24 (s), 8.06 (m), 7.91 (m), 7.81 (m), 7.54 (m), 7.47 (m), 7.43 - 7.13 (m), 5.91 (s), 4.98 - 4.85 (m), 4.76 (m), 4.43 (m), 4.30 (s), 4.14 (m), 4.00 - 3.90 (m), 3.52 (m), 3.16 (m), 2.92 - 2.86 (m), 2.31 - 2.25 (m), 1.90 (s), 1.52 (s), 1.34 (s), 1.32 (m), 0.78 (m).
Preparation of Reference Example 4-((23S,26S)-1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosanamido)benzyl (2-(((((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-(phosphonooxy)-2,3-dihydro-1H-benzo[e]ind ole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)carbonyl)(2-methoxyet hyl)amino)ethyl)(methyl) carbamate [206]
Step 1: 202 (227 mg, 0.52 mmol) was dissolved in CH2Cl2 (2 mL) and DMF (2 mL), added PFP-O-TFA (0.19 mL, 1.05 mmol) and DIPEA (0.275 mL, 1.57 mmol). The mixture was stirred at room temperature for 2 h. Concentrated in vacuo, and the residue was purified by Gilson HPLC (0.02% TFA) to give the corresponding PFP ester 203 as yellow oil (34 mg, 11%). LC-MS: m/z 623.4 [M + Na], retention time = 0.92 min.
Step 2: 203 (3 mg, 0.005 mmol) was added to a solution of 199 (7 mg, 0.005 mmol) in DMF (0.3 mL), followed by DIPEA (0.005 mL, 0.03 mmol). The mixture was stirred at room temperature for 2 h. The reaction mixture was subjected to Gilson HPLC separation (0.02% TFA) to give the product 204 as yellow solid (4.6 mg, 60%). LC-MS: m/z 1664.1 [M + H], retention time = 1.63 min. 1H NMR (400 MHz, DMSO-d6), δ 8.39 (s), 8.14 (m), 8.10 - 7.99 (m), 7.63 (m), 7.55 -7.5 (m), 7.48 (s), 7.02 (s), 6.52 (s), 5.99 (s), 5.07 - 4.95 (m), 4.84 (t), 4.52 (t), 4.38 (s), 4.24 (t), 4.08 - 3.99 (m), 3.61 - 3.48 (m), 3.00 - 2.89 (m), 2.68 (s), 2.34 (s), 0.86 (dd).
Preparation of Reference Example 4-((23S,26S)-1-amino-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-di azaheptacosanamido)benzyl (2-(((((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-(phosphonooxy)-2,3-dihydro-1H-benzo[e]ind ole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)carbonyl)(2-methoxyet hyl)amino)ethyl)(methyl)carbamate [208]
Step 1: 205 (43 mg, 0.07 mmol) was dissolved in DMF (2 mL), added PFP-O-TFA (0.026 mL, 0.14 mmoL), followed by DIPEA (0.038 mL, 0.21 mmol). The mixture was stirred at room temperature for 2 h. The crude was purified by Gilson HPLC (0.02% TFA) to give the product 206 as colorless oil (39 mg, 72%). LC-MS: m/z 742.2 [M + H], retention time = 2.17 min.
Step 2: 199 (7 mg, 0.005 mmol) was dissolved in DMF (0.6 mL), added a solution of the above PFP ester 206 (3.7 mg, 0.005 mmol) in DCM (0.1 mL), followed by DIPEA (0.005 mL, 0.03 mmol). The mixture was stirred at rt for 1 h. Crude product 207: LC-MS: m/z 1805.3 [M + H], retention time = 1.97 min.
Step 3: To the above reaction mixture 207, piperidine (0.02 mL, 0.2 mmol) was added, and the mixture was stirred at rt for 30 min. Concentrated in vacuo, and the crude was purified by Gilson HPLC (0.02% TFA) to give the product 208 as yellow solid (4.2 mg, TFA salt, 50%). LC-MS: m/z 1584.0 [M + H], retention time = 1.54 min. 1H NMR (400 MHz, DMSO-d6), δ 9.98 (s), 8.38 (s), 8.14 (m), 7.98 (m), 7.88 (m), 7.70 (s), 7.62 (m), 7.54 (m), 7.47 (m), 7.27 (m), 6.01 (s), 5.06 - 5.00 (m), 4.84 (m), 4.51 (m), 4.37 (m), 4.25 (m), 4.08 (m), 4.02 (m), 3.59 (m), 3.25 (m), 2.98 (m), 2.37 (m), 1.97 (s), 1.69 (s), 1.59 9s), 1.39 (m), 0.86 (dd).
Preparation Reference Example (1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-{[(4-nitrophenoxy)carbonyl]oxy}-1,2-dihydro-3 H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl acetate (211).
Step 1: To a stirring mixture of 2 (425 mg, 1.31 mmol) in 5 mL of THF under nitrogen at 0 °C, triethylamine (0.333 mL, 2.39 mmol) was added followed immediately by 191 (535 mg, 1.19 mmol) dissolved in 5 mL of THF. The reaction was allowed to stir at 0 °C for 5 minutes and then allowed to warm to room temperature while stirring. The reaction was allowed to stir at room temperature for ∼30 minutes. Reaction was then reduced down onto silica. Silica chromatography was then preformed (gradient: 5%-80% acetone in heptanes). Appropriate test tubes where concentrated and placed underneath high vacuum to produce 209 (530 mg, 60%) as a yellow solid. LC-MS (Protocol B): m/z 735.1 [M+H]+, retention time = 2.48 minutes.
Step 6: A stirring solution of 209 (610 mg, 0.829 mmol) in 15 mL of THF under nitrogen was cooled to 0 °C using an ice bath. Palladium 10 wt. % on activated carbon (203 mg) was then added followed by the slow dropwise addition of 2 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 °C for 12-24 hours. Reaction was diluted with ether followed by the addition of sodium sulfate. Reaction was filtered through celite, and the celite was washed twice with ether. The organics where combined and then reduced down. Residue was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 80% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 210 (206 mg, 44%) as a yellow solid. LC-MS (Protocol B): m/z 645.0 [M+H]+, retention time = 2.08 minutes. 1H NMR (400 MHz, DMSO) δ 10.49 (br s), 8.13-8.18 (d), 8.05-8.10 (d), 7.93-7.97 (d), 7.83-7.91 (m), 7.63-7.69 (t), 7.53-7.58 (m), 7.38-7.43 (m), 4.83-4.92 (m), 4.74-4.82 (m), 4.50-4.55 (d), 4.39-4.47 (m), 4.20-4.27 (m), 4.01-4.15, 3.88-3.96 (m), 3.57-3.68 (m), 1.74-1.80, 1.36-1.39 (m).
Step 7: To a stirring solution of 210 (195 mg, 0.302 mmol) in 12 mL of dichloromethane and 8 mL THF at 0 °C, 4-nitrophenyl carbonochloridate (122 mg, 0.604 mmol) was added followed by triethylamine (0.168 mL, 1.21 mmol). The reaction was allowed to stir at 0 °C for 5 minutes, and then allowed to warm to room temperature while stirring. Reaction was allowed to stir at room temperature for ∼30 minutes. Reaction was reduced down. Residue was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 85% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 211 (240 mg, 98%) as a yellow solid. LC-MS (Protocol B): m/z 810.3 [M+H]+, retention time = 2.35 minutes.
Preparation of Reference Example N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-valyl-N-[4-({[{2-[({[(1S)-3-[(5-{[(1S)-5-(acetylo xy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-1-(chloro methyl)-2,3-dihydro-1H-benzo[e]indol-5-yl]oxy}carbonyl)(methyl)amino]ethyl}(methyl)carbamoyl]ox y}methyl)phenyl]-N∼5∼-carbamoyl-L-ornithinamide (215)
Step 1: To a stirring solution of 212 (750 mg, 1.02 mmol) and 213 tert-butyl methyl[2-(methylamino)ethyl]carbamate (192 mg, 1.02 mmol) in 6 mL of DMA, 2-6-Lutidine (0.236 mL, 2.03 mmol) was added followed by Hunig's base (0.354 mL, 2.03 mmol) and HOAT (69.1 mg, 0.5 mmol). Reaction was allowed to stir at room temperature for ∼40 minutes. Reaction was injected onto a 25g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase) and then purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 45% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 214 (663 mg, 83%) as a white solid. LC-MS (Protocol B): m/z 787.3 [M+H]+, retention time = 1.45 minutes.
Step 2: To a stirring mixture of 214 (40.9 mg, 0.052 mmol) in 2 mL of dichloromethane, TFA (1 mL, 10 mmol) was added. Reaction was allowed to stir at room temperature for ∼40 minutes. Reaction was reduced down and then placed underneath high vacuum. Crude material was taken up in 2 mL of DMA and to this stirring solution Hunig's base (0.03 mL, 0.17 mmol) was added followed by 2,6-Lutidine (0.02 mL, 0.17 mmol), HOAT (5.9 mg, 0.043 mmol), and then 211 (35 mg, 0.043 mmol) dissolved in 1 mL of DMA. Reaction was allowed to stir at room temperature for ∼40 minutes. Reaction was injected onto a 5g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase) and then purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 60% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 215 (14.1 mg, 24%) as a yellow solid. LC-MS (Protocol B): m/z 1359.3 [M+3H]+, retention time = 2.01 minutes. HR-MS: m/z 1359.4549 [M+3H]+.
Preparation of N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N ∼5∼-carbamoyl-N-{4-[({methyl[2-(methylamino)ethyl]carbamoyl}oxy)methyl]phenyl}-L-ornithinamide (215).
Step 1: To a round bottom flask containing 1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-3,6,9,12,15,18-hexaoxahenicosan-21-oic acid, 216 (628 mg, 1.45 mmol), 20 mL of dichloromethane, 2 mL of DMF, HATU (501 mg, 1.32 mmol) and Hunig's base (0.92 mL, 5.3 mmol) was added. The reaction was allowed to stir at room temperature for 2 minutes before the addition of L-valyl-N∼5∼-carbamoyl-N-[4-(hydroxymethyl)phenyl]-L-ornithinamide, 217 (500 mg, 1.32 mmol). The reaction was allowed to stir at room temperature for ∼90 minutes before being quenched through the addition of TFA. The reaction was concentrated to a smaller volume, diluted with a few mLs of DMSO and then injected onto a 25g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 40% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 218 (514 mg, 49%) as a clear solid. LC-MS (Protocol B): m/z 795.5 [M+H]+, retention time = 1.01 minutes.
Step 2: To a stirring solution of 218 (210 mg, 0.264 mmol) and bis(4-nitrophenyl) carbonate (161 mg, 0.528 mmol) in 4 mL of DMF, Hunig's base (0.096 mL, 0.554 mmol) was added. The reaction was allowed to stir at room temperature for ∼2 hours. The reaction was injected onto a 25g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 55% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 219 (180 mg, 71%) as a solid. LC-MS (Protocol B): m/z 960.5 [M+H]+, retention time = 1.48 minutes.
Step 3: To a stirring solution of 219 (640 mg, 0.667 mmol) and 213 [prepared as described J. Med. Chem. 1992, 33, 559-567] (127 mg, 0.674 mmol) in 6 mL of DMA, 2,6-Lutidine (0.154 mL, 1.33 mmol) was added followed by Hunig's base (0.232 mL, 1.33 mmol) and HOAT (9.1 mg, 0.67 mmol). The reaction was allowed to stir at room temperature for ∼15 minutes. The reaction was injected onto a 25g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 40% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 220 (564 mg, 84%) as a wax like white solid. LC-MS (Protocol B): m/z 1009.7 [M+H]+, retention time = 1.43 minutes.
Step 4: To a stirring mixture of 220 (470 mg, 0.466 mmol) in 6 mL of dichloromethane, TFA (3.0 mL, 40 mmol) was added. The reaction was allowed to stir at room temperature for ∼10 minutes. Reaction was reduced down. Residue was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 30% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 221 (326 mg, 68%) as a white oil/solid mix. LC-MS (Protocol B): m/z 909.8 [M+H]+, retention time = 0.91 minutes.
Preparation of Reference Example N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N -[4-({[{2-[({[(1S)-3-[(5-{[(1S)-5-(acetyloxy)-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbon yl}thiophen-2-yl)carbonyl]-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl]oxy}carbonyl)(methyl )amino]ethyl}(methyl)carbamoyl]oxy}methyl)phenyl]-N∼5∼-carbamoyl-L-ornithinamide (222).
Preparation of Reference Example N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N ∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1 ,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide (223)
Step 1: To a stirring solution of 196 (29.8 mg, 0.035 mmol) in 0.5 mL of DMA, 221 (17.3 mg, 0.019 mmol) was added as a solution in 1.5 mL of DMA followed by the addition of Hunig's base (0.024 mL, 0.14 mmol), 2,6-Lutidine (0.016 mL, 0.14 mmol) and HOAT (4.8 mg, 0.035 mmol). The reaction was allowed to stir at room temperature for ∼20 minutes. The reaction was injected onto a 5g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 75% acetonitrile in water with 0.02% TFA in each phase) followed by preparative HPLC purification (method B) with the appropriate test tubes concentrated using a genevac producing 222 (22.6 mg, 40%) as a yellow solid. LC-MS (Protocol B): m/z 1619.9 [M+3H]+, retention time = 1.62 minutes. HPLC (Protocol D): retention time = 9.339 minutes.
Preparation of methyl 3-(chlorocarbonyl)bicyclo[1.1.1]pentane-1-carboxylate (225).
Preparation of (8S)-8-(chloromethyl)-6-[(3-{[(1S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,6-dihydropyrrolo[ 3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-methyl-3,6,7,8-tetrahydropyrrolo[3 ,2-e]indol-4-yl 4-nitrophenyl carbonate trifluoroacetic acid salt 230.
Step 1: To a stirring solution of 8 (4.5 g, 13.4 mmol) in 80 mL of THF and 80 mL of acetonitrile, carbon tetrachloride (18.1 mL, 187 mmol) was added followed by Hunig's base (9.31 mL, 53.4 mmol), dibenzylphosphite (17.7 mL, 80.2 mmol), and DMAP (326 mg, 2.67 mmol). The reaction was allowed to stir at room temperature for ∼10 minutes. Reaction was reduced down onto silica. Silica chromatography was then preformed (gradient: 0%-20% acetone in heptanes). Appropriate test tubes where concentrated and placed underneath high vacuum to produce 226 (6.04 g, 76%) as a light yellow solid. LC-MS (Protocol B): m/z 614.3 [M+NH4]+, retention time = 2.38 minutes.
Step 2: To a stirring solution of 226 (2.15 g, 3.60 mmol) in 24 mL of dichloromethane, TFA (24 mL, 310 mmol) was added. The reaction was allowed to stir at room temperature for ∼60 seconds, immediately reduced down, and then placed underneath vacuum (belt pump). To a stirring solution of crude material (2.59 g, 3.57 mmol) in 15 mL of THF at 0ºC, triethylamine (1.49 mL, 10.7 mmol) was added followed immediately by 225 (674 mg, 3.57 mmol) dissolved in 15 mL of THF was added. The reaction was allowed to stir at 0ºC for ∼5 minutes and then allowed to warm to room temperature while stirring. The reaction was allowed to stir at room temperature for ∼20 minutes. Reaction was reduced down onto silica. Silica chromatography was then preformed (gradient: 0%-30% acetone in heptanes). Appropriate test tubes where concentrated and placed underneath high vacuum to produce 227 (920 mg, 40%, 2 steps) as a white solid. LC-MS (Protocol B): m/z 649.2 [M+H]+, retention time = 2.04 minutes.
Step 3: To a stirring solution of 227 (895 mg, 1.38 mmol) in 16 mL of THF, lithium hydroxide (330 mg, 13.8 mmol) dissolved in 4 mL of water was added. The reaction was allowed to stir at room temperature for ∼90 minutes. Dichloromethane was added followed by aqueous 1N HCI. Material was transferred to a separatory funnel. The organic layer was separated and the aqueous was washed twice with dichloromethane. The organic layers where combined, washed once with brine, water, dried over sodium sulfate, filtered, and then reduced down before being placed underneath high vacuum. Crude material was taken up in 15 mL of THF and 5 mL dichloromethane then cooled to 0ºC. To this stirring solution at 0ºC oxalyl chloride (0.140 mL, 1.63 mmol) was added followed by 1 drop of DMF. The reaction was allowed to warm to room temperature and then stir at room temperature for ∼60 minutes. Reaction was reduced down and then placed underneath high vacuum 228 (820 mg, 91%, 2 steps) as a light brown solid. Crude material was used as is in the next step.
Step 4: To a stirring solution of 11 (527 mg, 1.50 mmol) in 12 mL of THF at 0ºC, triethylamine (0.348 mL, 2.50 mmol) was added followed immediately by 228 (816 mg, 1.25 mmol) dissolved in 12 mL of THF. The reaction was allowed to stir at 0ºC for ∼5 minutes before being allowed to warm to room temperature while stirring. The reaction was allowed to stir at room temperature for ∼30 minutes. Reaction was reduced down onto silica. Silica chromatography was then preformed (gradient: 0%-45% acetone in heptanes). Appropriate test tubes where concentrated and placed underneath high vacuum to produce 229 (660 mg, 59%) as a white solid. LC-MS (Protocol B): m/z 895.3 [M+H]+, retention time = 2.21 minutes.
Step 5: To a stirring solution of 229 (652 mg, 0.728 mmol) in 20 mL of methanol, 4M HCl in dioxane (20 mL, 80 mmol) was added. The reaction was allowed to stir at room temperature for ∼24 minutes. Reaction was reduced and then placed underneath high vacuum. To a stirring solution of crude material in 16 mL of dichloromethane and 16 mL of THF at 0ºC, p-nitrophenyl chloroformate (191 mg, 0.946 mmol) was added followed immediately by triethylamine (0.508 mL, 3.64 mmol). The reaction was allowed to stir at 0ºC for ∼5 minutes and then allowed to warm to room temperature while stirring. The reaction was allowed to stir at room temperature for ∼10 minutes. Reaction was reduced down. To a stirring solution of crude material in 12 mL of dichloromethane, a solution of TFA (12 mL, 160 mmol) in 12 mL of dichloromethane was added followed by the addition of thiophenol (0.745 mL, 7.28 mmol). The reaction was allowed to stir at room temperature for ∼6 hours. Reaction was reduced down. Crude material was diluted with a few milliliters of DMSO and then injected onto a 25g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 15% to 60% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 230 (267 mg, 34%, 3 steps) as a light yellow solid. LC-MS (Protocol B): m/z 838.3 [M+H]+, retention time = 1.68 minutes.
Preparation of N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N ∼5∼-carbamoyl-N-[4-({[(2-{[({(8S)-8-(chloromethyl)-6-[(3-{[(1S)-1-(chloromethyl)-8-methyl-5-(phosph on ooxy)-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-methyl-3, 6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy} meth yl)phenyl]-L-ornithinamide trifluoroacetic acid salt (231).
Step 1: To a 2 dram vial containing 230 (90 mg, 0.11 mmol) and 215 (121 mg, 0.118 mmol), 3.0 mL of DMA was added followed by Hunig's base (0.0748 mL, 0.429 mmol), 2,6-Lutidine (0.0497 mL, 0.429 mmol) and HOAT (14.7 mg, 0.108 mmol). The reaction was allowed to stir at room temperature for ∼15 minutes. Crude reaction was injected onto a 12g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 45% acetonitrile in water with 0.02% TFA in each phase) followed by a second purification by method H with the appropriate test tubes concentrated using a genevac producing 231 (117 mg, 60%) as a white solid. LC-MS (Protocol B): m/z 1607.8 [M+H]+, retention time = 1.60 minutes.
Preparation of N∼2∼-acetyl-N∼6∼-(tert-butoxycarbonyl)-L-lysyl-L-valyl-N∼5∼-carbamoyl-N-{4-[({methyl[2-(methylami no)ethyl]carbamoyl}oxy)methyl]phenyl}-L-ornithinamide trifluoroacetic acid salt (236).
Step 1: To a stirring solution of compound 213 (16.0 g, 85.0 mmol) and Hunig's base (23 g, 178 mmol) in 450 mL of THF at 0ºC, Fmoc-CI (22 g, 85.0 mmol) was added drop wise as a solution in 450 mL of THF. The mixture was stirred at 0ºC for 10 minutes. The reaction was allowed to stir at room temperature overnight. The reaction was diluted with ethyl acetate and then washed with NH4Cl (aq) and brine. The organic layer separated, dried over Na2SO4 and reduced down. The residue was purified by silica chromatography (gradient: 2.5%-50% ethyl acetate in petroleum ether). Appropriate test tubes where concentrated. Material was dissolved in 150 mL of ethyl acetate followed by the addition of 150 mL of HCl in ethyl acetate. The reaction was allowed to stir at room temperature overnight. The reaction was concentrated and 300 mL of MTBE was added. The resulting precipitate was collected by filtration to provide 232 (10.4 g, 42%, 2 steps) as a white solid. 1H NMR (400 MHz, DMSO-d6), δ 8.89 (br, 2H), 7.91 (d, 2H), 7.66 (d, 2H) 7.42 (m, 2H), 7.36 (m, 2H), 4.34 (m, 3H), 3.51 (m, 1H), 3.04 (m, 1H), 2.85 (s, 3H), 2.72 (m, 1H),2.32 (m, 1H).
Step 2: To a solution of 217 (481 mg, 1.27 mmol) in 10 mL of DMF, 233 (366 mg, 1.27 mmol), HATU (660 mg, 1.65 mmol) and Hunig's base (0.302 mL, 1.6 mmol) where added. The reaction was allowed to stir at room temperature for ∼30 minutes.. The reaction was diluted with ethyl acetate which caused to solids to crash out. This slurry was allowed to stir for ∼30 minutes. The solids were collected by filtration, rinsed with fresh ethyl acetate and dried under high vacuum to obtain 234 (797 mg, 97%) as a brown colored solid. LC-MS (Protocol B): m/z 650.3 [M+H]+, retention time = 0.64 minutes.
Step 3: To a solution of compound 234 (18.5 g, 28.5 mmol) in DMF (500 mL), bis(4-nitrophenyl) carbonate (9.54 g, 31.4 mmol) was added followed by Hunig's base (5.5 g, 42.8 mmol). The reaction was allowed to stir at room temperature for ∼12 hours. The reaction was concentrated. The residue was purified by silica chromatography (gradient: 1%-10% methanol in dichloromethane to provide 235 (6.9 g, 29.7%) as a white solid. 1H NMR (400 MHz, DMSO-d6), δ 8.30 (d, 2H), 8.12 (d, 1H), 8.01 (d, 1H), 7.70 (d, 1H), 7.64 (d, 2H), 7.56 (d, 2H), 7.40 (d, 2H), 6.78 (m, 1H), 5.98 (m, 1H), 5.43 (s, 2H), 5.24 (s, 2H), 4.49 (m, 1H), 4.19 (m, 2H), 2.86 (m, 4H), 1.99 (m, 1H), 1.60 (m, 3H), 1.36 (m, 16H), 0.82 (m, 6H).
Step 4: To a stirring solution of 235 (500 mg, 0.605 mmol) and 232 (210 mg, 0.605 mmol) in 3.0 mL of DMA, Hunig's base (0.316 mL, 1.82 mmol) was added. The reaction was allowed to stir at room temperature for ∼30 minutes. Piperidine (0.598 mL, 6.05 mmol) was then added to the reaction. The reaction was allowed to stir at room temperature for an additional ∼15 minutes. Crude reaction was injected onto a 12g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 35% acetonitrile in water with 0.02% TFA in each phase). Appropriate test tubes concentrated using a genevac producing 236 (475 mg, 89%, 2 steps) as a clear white solid. LC-MS (Protocol B): m/z 764.4 [M+H]+, retention time = 1.03 minutes.
Preparation of N∼2∼-acetyl-L-lysyl-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(8S)-8-(chloromethyl)-6-[(3-{[(1S)-1-(chloro methyl)-8-methyl-5-(phosphonooxy)-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1] pent-1-yl)carbonyl]-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl}oxy)carbonyl](methyl)amino }ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide trifluoroacetic acid salt (237).
Preparation of 3-{[2-({[(2-{[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy) carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]disulfanyl}-N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-alanine (244)
Step 1: To a stirring mixture of N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-cysteine 238 (17.9 g, 52.1 mmol) in dry ethanol (360 mL) at 0ºC acetic acid (2.41 g, 40.1 mmol) was added. Then a solution of [2-(pyridin-2-yldisulfanyl)phenyl]methanol 239 (10 g, 40.104 mmol) in dry ethanol (200 mL) was added to the reaction mixture at 0ºC. The mixture was stirred at room temperature for 20 minutes. The reaction mixture was concentrated in vacuo producing yellow oil. The residue was purified by preparative HPLC (method M) producing a yellow gum (3.5 g). To a stirring solution of this crude material (2.5 g, 5.191 mmol) in dry dichloromethane (100 mL) at 0ºC, bis(4-nitrophenyl) carbonate (1.9 g, 6.23 mmol) was added followed by Hunig's base (805 mg, 6.23 mmol). The mixture was stirred at 0ºC for ½ hour and then allowed to warm to room temperature. The reaction was allowed to stir at room temperature for ∼23 hours. The reaction mixture was warmed to 30ºC and allowed to stir at 30ºC for ∼18 hours. The reaction was warmed to 40ºC and allowed to stir at 40ºC for ∼6 hours. The reaction mixture was washed with 1 M HCl (20 mL x 2), brine, dried over sodium sulfate and concentrated in vacuo to give the residue (3.89 g) as yellow oil. The residue was purified by silica gel chromatography (Gradient: 0% to 4% methanol in dichloromethane) to produce a yellow solid (2.48 g). To a stirring solution of this crude material in THF (35 mL) at 0°C, 213 (635 mg, 3.37 mmol) was added followed by Hunig's base (793 mg, 6.14 mmol), 2,6-lutidine (657 mg, 6.14 mmol) and HOAT (41.8 mg, 0.307 mmol). The reaction mixture was allowed to warm to room temperature and then stir at room temperature for 40 minutes. The reaction mixture was diluted with ethyl acetate (200 mL), washed with 1 M HCl (30 mL, x2), and brine. The organics where dried over sodium sulfate and concentrated in vacuo to give the crude product (3.6 g) as yellow oil. The crude product was purified by silica gel chromatography (Gradient: 0% to 4% methanol in dichloromethane) to give the product (2.35 g) as a yellow gum. The product was then purified by preparative HPLC using (method M, using gradient 50% B to 80% B over 30 minutes, then 95% over 5 minutes). The mixture was concentrated in vacuum and extracted with ethyl acetate (100 mL, x3). The organic layers were combined, washed with brine, dried over sodium and concentrated in vacuo to give 240 (1.45 g, 7%, 3 steps) as a yellow gum. 1H NMR (400 MHz, DMSO-d6): δ 7.91-7.89 (m, 3H), 7.74-7.72 (m, 3H), 7.44-7.31 (m, 7H), 5.14 (s, 2H), 4.34-4.24 (m, 4H), 3.31-3.29 (m, 3H), 3.10-3.09 (m, 1H), 3.04-3.02 (m, 1H), 2.86-2.82 (d, 3H), 2.75-2.73 (m, 2H), 2.67-2.50 (m, 2H), 1.38-1.31 (m, 9H).
Step 2: To a stirring solution of 240 (35 mg, 0.050 mmol) in 4 mL of dichloromethane, TFA (2 mL, 30 mmol) was added. The reaction was allowed to stir at room temperature for ∼10 minutes. Reaction was concentrated in vacuo and placed underneath high vacuum to produce 241 as a white solid (40 mg, quant.). LC-MS (Protocol B): m/z 596.5 [M+H]+, retention time = 1.38 minutes.
Step 3: To a vial containing 241 (29.8 mg, 0.042 mmol) and 242 (1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl 4-nitrophenyl carbonate [prepared utilizing the chemistry described in the preparation of 229], (35.0 mg, 0.042 mmol), 2.0 mL of DMA was added followed immediately by Hunig's base (0.0293 mL, 0.168 mmol), 2,6-Lutidine (0.0195 mL, 0.168 mmol), and HOAT (5.72 mg, 0.042 mmol). The reaction was allowed to stir at room temperature for ∼10 minutes. Piperidine (0.30 mL, 3 mmol) was then added to the reaction and the reaction was allowed to stir at room temperature for ∼10 minutes. Crude reaction was injected onto a 12g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 65% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 243 (30 mg, 60%) as a gray solid. LC-MS (Protocol B): m/z 838.3 [M+2H]+, retention time = 1.55 minutes.
Step 4: To a stirring solution of 243 (20 mg, 0.017 mmol) and pentafluorophenyl 6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoate (7.03 mg, 0.0186 mmol) in 1.5 mL of DMF, Hunig's base (0.0118 mL, 0.0677 mmol) was added. The reaction was allowed to stir at room temperature for ∼15 minutes. Crude reaction was injected onto a 5g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 20% to 70% acetonitrile in water with 0.02% TFA in each phase) followed by preparative HPLC purification (method l1) with the appropriate test tubes concentrated using a genevac producing 244 (0.8 mg, 4%) as a gray solid. LC-MS (Protocol D): m/z 630.8 [1/2 M+1H]+, retention time = 10.786 minutes.
Preparation of 3-{[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy) carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]disulfanyl}-N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-alanine 250
Step 1: To a stirring mixture of N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-cysteine 238 (11.6 g, 33.7 mmol) in dry ethanol (230 mL) at 0ºC acetic acid (1.93 g, 32.1 mmol) was added. Then a solution of [4-(pyridin-2-yldisulfanyl)phenyl]methanol 245 (10 g, 40.104 mmol) in dry ethanol (160 mL) was added to the reaction mixture at 0ºC. The mixture was allowed to room to room temperature and then stirred at room temperature for 4 hours. The reaction mixture was concentrated in vacuo producing a yellow oil. The residue was purified by prep-HPLC (method M, using gradient 45% B to 75% B over 30 minutes, then 95% over 5 minutes) producing a yellow gum (8.5 g). To a stirring solution of this crude material (8.0 g, 16.61 mmol) in dry dichloromethane (320 mL) at 0ºC, bis(4-nitrophenyl) carbonate (6.06 g, 19.9 mmol) was added followed by Hunig's base (2.58 g, 19.9 mmol). The mixture was stirred at 0ºC for 10 minutes and then allowed to warm to room temperature. The reaction was allowed to stir at room temperature for ∼15 hours. Additional Bis(4-nitrophenyl) carbonate (1.52 g, 4.98 mmol) and Hunig's base (644 mg, 4.98 mmol, 0.3 eq) was then added to the reaction mixture. The reaction was allowed to stir at room temperature for an additional 2 hours. The reaction mixture was washed with 1 M HCl (50 mL x 2), brine, dried over sodium sulfate and concentrated in vacuo to give the residue (17.1 g) as yellow oil. The residue was purified by silica gel chromatography (Gradient: 0% to 7% methanol in dichloromethane) to produce a yellow oil. To a stirring solution of this crude material in THF (103 mL) at 0°C, 171 (1.89 g, 10.0 mmol) was added followed by Hunig's base (2.36 g, 18.2 mmol), 2,6-lutidine (1.96 g, 18.2 mmol) and HOAT (124 mg, 0.912 mmol). The reaction mixture was allowed to warm to room temperature and then stir at room temperature for 60 minutes. The reaction mixture was diluted with ethyl acetate (200 mL), washed with 1 M HCl (30 mL, x2), and brine. The organics where dried over sodium sulfate and concentrated in vacuo to give the crude product (7.5 g) as yellow oil. The crude product was purified by silica gel chromatography (Gradient: 0% to 4% methanol in dichloromethane) to give the product (4.0 g) as a yellow gum. The product was then purified by (method M, using gradient 50% B to 80% B over 30 minutes, then 95% over 5 minutes). The mixture was concentrated in vacuo and extracted with ethyl acetate (100 mL, x3). The organic layers were combined, washed with brine, dried over sodium and concentrated in vacuo to give 246 (3.0 g, 13%, 3 steps) as a white solid. 1H NMR (400 MHz, DMSO-d6): δ 7.89-7.87 (d, 2H), 7.71-7.70 (d, 2H), 7.55-7.52 (m, 2H), 7.50-7.41 (m, 2H), 7.39-7.30 (m, 4H), 4.97 (s, 2H), 4.30-4.22 (m, 4H), 3.29 (br, 4H), 3.10-3.01 (m, 2H), 2.82-2.80 (d, 3H), 2.73 (s, 1H), 2.66 (s, 2H), 1.32-1.30 (d, 9H).
Step 2: To a stirring solution of 246 (499 mg, 0.717 mmol) in 4.0 DMF, piperidine (1.13 mL, 11.5 mmol) was added. The reaction was allowed to stir at room temperature for ∼5 minutes. Crude reaction was injected onto a 12g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 50% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 3-{[4-(4,7,10,10-tetramethyl-3,8-dioxo-2,9-dioxa-4,7-diazaundec-1-yl)phenyl]disulfanyl}-L-alanine 247 (320 mg, 76%) as a gray solid. LC-MS (Protocol B): m/z 474.5 [M+H]+, retention time = 1.19 minutes.
Step 3: To a stirring solution of 247 (140 mg, 0.238 mmol) and pentafluorophenyl 6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoate (98.9 mg, 0.262 mmol), 2 mL of DMF was added followed immediately by Hunig's base (0.124 mL, 0.715 mmol). The reaction was allowed to stir at room temperature for ∼5 minutes. Crude reaction was injected onto a 12g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 10% to 70% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-3-{[4-(4,7,10,10-tetramethyl-3,8-dioxo-2,9-dioxa-4,7-diazaundec-1-yl)phenyl]disulfanyl}-L-alanine 248 (56 mg, 35%) as a clear solid. LC-MS (Protocol B): m/z 667.3 [M+H]+, retention time = 1.71 minutes.
Step 4: To a stirring solution of 248 (35 mg, 0.050 mmol) in 4 mL of dichloromethane, TFA (2 mL, 30 mmol) was added. The reaction was allowed to stir at room temperature for ∼10 minutes. Reaction was concentrated in vacuo and placed underneath high vacuum to produce 249 as a white solid (40 mg, quant.).
Step 4: To a vial containing 249 (18.0 mg, 0.0264 mmol) and 242 (22.0 mg, 0.0264 mmol), 1.6 mL of DMA was added followed immediately by Hunig's base (0.0184 mL, 0.106 mmol), 2,6-Lutidine (0.0123 mL, 0.106 mmol), and HOAT (3.60 mg, 0.0264 mmol). The reaction was allowed to stir at room temperature for ∼10 minutes. Crude reaction was injected onto a 12g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 10% to 60% acetonitrile in water with 0.02% TFA in each phase) followed by preparative HPLC purification (method 12) with the appropriate test tubes concentrated using a genevac producing 250 (16.7 mg, 50%) as a white solid. LC-MS (Protocol B): m/z 1261.4 [M+3H]+, retention time = 1.71 minutes.
Preparation of N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(8S)-8-(chloromethyl)-6-[(3-{[(1S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide 255.
Step 1: N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N∼5∼-carbamoyl-N-[4-(hydroxymethyl)phenyl]-L-ornithinamide 251 (725 mg, 1.2 mmol) was dissolved in 6 mL of DMF followed by sonication for ∼10 minutes. A stir bar was then added and this solution was allowed to stir at room temperature. Bis(4-nitrophenyl)carbonate (403 mg, 1.33 mmol) was then added followed by Hunig's base (0.44 mL, 2.5 mmol). The reaction was allowed to stir at room temperature for ∼5 hours. 213 (227 mg, 1.2 mmol) dissolved in 1 mL of DMF was added. The reaction was allowed to stir at room temperature for ∼1 minute. Crude reaction was injected onto a 24g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 60% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N∼5∼-carbamoyl-N-[4-(4,7,10,10-tetramethyl-3,8-dioxo-2,9-dioxa-4,7-diazaundec-1-yl)phenyl]-L-ornithinamide 252 (395 mg, 40%, 2 steps) as a brown solid. LC-MS (Protocol B): m/z 816.7 [M+H]+, retention time = 1.88 minutes.
Step 2: To a stirring mixture of 252 (197 mg, 0.241 mmol) in 6 mL of dichloromethane, TFA (2 mL, 30 mmol) was added. The reaction was allowed to stir at room temperature for ∼20 minutes. Reaction was concentrated in vacuo and placed underneath high vacuum producing N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N∼5∼-carbamoyl-N-[4-(4,7,10,10-tetramethyl-3,8-dioxo-2,9-dioxa-4,7-diazaundec-1-yl)phenyl]-L-ornithinamide 253 (210 mg, quant.) as white and light brown solid. LC-MS (Protocol B): m/z 716.7 [M+H]+, retention time = 1.27 minutes.
Step 3: To a vial containing 230 (48 mg, 0.053 mmol) and 253 (52.4 mg, 0.063 mmol), 2.0 mL of DMA was added followed immediately by Hunig's base (0.036 mL, 0.211 mmol), 2,6-Lutidine (0.024 mL, 0.211 mmol), and HOAT (7.1 mg, 0.0525 mmol). The reaction was allowed to stir at room temperature for ∼10 minutes. Piperidine (0.30 mL, 3 mmol) was then added and the reaction was allowed to stir at room temperature for ∼10 minutes. Crude reaction was injected onto a 12g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 10% to 50% acetonitrile in water with 0.02% TFA in each phase) with the appropriate test tubes concentrated using a genevac producing 254 (68 mg, 84%, 2 steps) as a light gray solid. LC-MS (Protocol B): m/z 1193.5 [M+2H]+, retention time = 1.46 minutes.
Step 4: To a stirring solution of 254 (30 mg, 0.020 mmol) and pentafluorophenyl 6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoate (8.11 mg, 0.0215 mmol) in 2.0 mL of DMF, Hunig's base (0.0136 mL, 0.0782 mmol) was added. The reaction was allowed to stir at room temperature for ∼10 minutes. Crude reaction was injected onto a 5g C18 pre-column (which was previously equilibrated with acetonitrile and then water, with 0.02% TFA in each phase). Material was purified by medium pressure reverse phase C18 chromatography (Gradient: 5% to 50% acetonitrile in water with 0.02% TFA in each phase) followed by a second preparative HPLC purification (method J1). Appropriate test tubes where concentrated using a genevac producing 255 (9.1 mg, 29%) as a light brown solid. LC-MS (Protocol B): m/z 1386.9 [M+2H]+, retention time = 1.60 minutes.
Preparation of N-(24-bromo-23-oxo-4,7,10,13,16,19-hexaoxa-22-azatetracosan-1-oyl)-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(8S)-8-(chloromethyl)-6-[(3-{[(1S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide 257.
Preparation of N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N-[(1S)-3-[(3-carboxybicyclo[1.1.1]pent-1-yl)carbonyl]-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl]-L-alaninamide 261
Step 1: A stirring solution of tert-butyl 3-{[(1S)-1-(chloromethyl)-5-nitro-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pentane-1-carboxylate 258 (prepared similarly to 189) (980 mg, 2.14 mmol) in 7 mL of THF under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (30 mg) was then added followed by the slow drop wise addition of 2 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 3 hours. Upon completion the reaction mixture was filtered through a pad of celite and the filtrate concentrated under vacuum. The crude products was purified by silica gel chromatography (Gradient: 0% to 10% MeOH in DCM) to give tert-butyl 3-{[(1S)-5-amino-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pentane-1-carboxylate 259 as a yellow solid (905 mg, 98%). LC-MS (Protocol B): m/z 427 [M+H]+, retention time = 1.92 minutes.
Step 2: A stirring solution of 259 (900, 2.11 mmol) in 5 mL of anhydrous DCM was added (9H-fluoren-9-yl)methyl (S)-(1-chloro-1-oxopropan-2-yl)carbamate (695 mg, 2.11 mmol) followed by drop wise addition of TEA (0.5 mL). The reaction was allowed to stir for 2 hours. Upon completion the reaction mixture was concentrated under vacuum. The crude products was purified by silica gel chromatography (Gradient: 0% to 100% Ethyl Acetate in Heptane) to give tert-butyl 3-{[(1S)-1-(chloromethyl)-5-({N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-alanyl}amino)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pentane-1-carboxylate 260 as a white solid (1.102 g, 73%). LC-MS (Protocol B): m/z 720 [M+H]+, retention time = 2.32 minutes.
Step 3: In a round-bottom flask equipped with a stir bar containing 260 (1000 mg, 1.388 mmol) was added 15 mL of 1:1 DCM in DEA. The solution was stirred for 3 hours. The reaction mixture was concentrated under vacuum and taken up in 50% DCM in Heptane and concentrated under vacuum again. This was repeated 3 times (to remove excess DEA) to give a crude white solid upon concentrating. This crude white solid was added to a round bottom flask containing (((9H-fluoren-9-yl)methoxy)carbonyl)-L-valine (471 mg, 1.38 mmol), and HATU (350 mg, 1.38 mmol) in 10 mL of anhydrous DCM. TEA (0.5 mL) was then added and the reaction was stirred at room temperature of 3 hours. Upon completion the reaction mixture was concentrated under vacuum. The crude products was purified by silica gel chromatography (Gradient: 0% to 100% Ethyl Acetate in Heptane) to give N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N-[(1S)-3-{[3-(tert-butoxycarbonyl)bicyclo[1.1.1]pent-1-yl]carbonyl}-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl]-L-alaninamide 261 as a white solid (1.005 g, 88%). LC-MS (Protocol B): m/z 819 [M+H]+, retention time = 2.31 minutes.
Step 4: 10 mL of 25 % TFA in DCM was added to a round bottom flask containing 261 (1000 mg, 1.22 mmol). The reaction was stirred for 3 hours. The solution was stirred for 3 hours. The reaction mixture was concentrated under vacuum and taken up in 50% DCM and Heptane and concentrated under vacuum. This was repeated 3 times (to remove excess TFA) to give a 262 as a white solid upon concentrating (920 mg, 98 %). LC-MS (Protocol B): m/z 763 [M+H]+, retention time = 1.88 minutes.
Preparation of N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-valyl-N-{(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}-L-alaninamide 266.
Step 1: In a round bottom flask containing N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N-[(1S)-3-[(3-carboxybicyclo[1.1.1]pent-1-yl)carbonyl]-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl]-L-alaninamide 262 (580 mg, 0.76 mmol) in 5 mL of THF was added HATU (298 mg, 0.76 mmol). The solution mixture was stirred at room temperature for 30 min. (1S)-5-(benzyloxy)-1-(chloromethyl)-8-methyl-1,2,3,6-tetrahydropyrrolo[3,2-e]indole 7 was then added followed by 0.3 mL of Hunigs base. The reaction was stirred for 1 hour and concentrated to a crude glass. The crude reaction mixture was purified by silica gel chromatography (Gradient: 0% to 10% MeOH in DCM) to give Synthesis of N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N-[(1S)-3-[(3-{[(1S)-5-{[bis(benzyloxy)phosphoryl]oxy}-1-(chloromethyl)-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl]-L-alaninamide 263 as a white solid (723 mg, 98%). LC-MS (Protocol B): m/z 1071 [M+H]+, retention time = 2.45 minutes.
Step 2: A stirring solution of of 263 (100mg, 0.932 mmol) in 7 mL of THF under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (10 mg) was then added followed by the slow drop wise addition of 0.5 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 1 hour. Upon completion the reaction mixture was filtered through a pad of celite and the filtrate concentrated under vacuum. The crude products was purified by silica gel chromatography (Gradient: 0% to 10% MeOH in DCM) to give Synthesis of N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N-{(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}-L-alaninamide 264 as a yellow solid (821 mg, 89%). %). LC-MS (Protocol B): m/z 981 [M+H]+, retention time = 2.16 minutes.
Step 3: To a stirring solution of of 264 (650 mg, 0.66 mmol) in 10 mL of THF and 10 mL of AcCN, carbon tetrachloride (2.04 mL, 21.0 mmol) was added followed by Hunig's base (1.12 mL, 6.45 mmol), dibenzylphosphite (694 mg, 2.65 mmol) and DMAP (catalytic). The reaction was allowed to stir at room temperature for 20 minutes. The reaction was concentrated to a crude glass. The crude reaction mixture was purified by silica gel chromatography (Gradient: 0% to 10% MeOH in DCM) to give N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N-[(1S)-3-[(3-{[(1S)-5-{[bis(benzyloxy)phosphoryl]oxy}-1-(chloromethyl)-8-methyl-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl]-L-alaninamide 265 as a white glass (502 mg, 66%). LC-MS (Protocol B): m/z 1243 [M+H]+, retention time = 2.46 minutes.
Step 4: A stirring solution of 264 (100mg, 0.932 mmol) in 7 mL of THF under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (10 mg) was then added followed by the slow drop wise addition of 0.5 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 1 hour. Upon completion the reaction mixture was filtered through a pad of celite and the filtrate concentrated under vacuum. The crude products was purified by silica gel chromatography (Gradient: 0% to 10% MeOH in DCM) to give L-valyl-N-{(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,6-dihydropyrrolo[3,2-e]indol-3(2H)-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}-L-alaninamide 265 as a yellow solid (25 mg, 18%). LC-MS (Protocol B): m/z 839 [M+H]+, retention time = 1.54 minutes.
Step 5: In a round bottom flask equipped with a stir bar and pentafluorophenyl 6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoate (18 mg, 0.046 mmol) was added 5 mL of anhydrous DCM and purged the system with N2. To this solution added of 265 (40 mg, 0.046 mmol)) and TEA (0.05 mL). The system was let to stir for 1 hour. The reaction was concentrated under vacuum and purified by provided 267 (20% 9 mg Method N), retention time = 15.462 minutes. LC-MS (Protocol B): m/z 1032 [M+H]+, retention time = 1.55 minutes. 1H NMR (400 MHz, DMSO-d6) δ 11.34 (s, 1H), 9.89 (s, 1H), 8.43 (s, 1H), 8.20 (d, J = 6.8 Hz, 2H), 7.91 (dd, J = 14.4, 8.4 Hz, 3H), 7.85 - 7.74 (m, 2H), 7.49 (t, J = 7.7 Hz, 1H), 7.35 (t, J = 7.8 Hz, 1H), 6.96 (d, J = 25.4 Hz, 4H), 4.52 (t, J = 7.1 Hz, 1H), 4.37 (dq, J = 22.0, 10.7 Hz, 4H), 4.18 (dt, J = 19.7, 8.5 Hz, 2H), 4.07 - 3.85 (m, 4H), 3.58 (t, J = 9.8 Hz, 1H), 3.43 - 3.12 (m, 34H), 2.71 (d, J = 8.2 Hz, 1H), 2.62 - 2.37 (m, 49H), 2.28 (s, 3H), 2.09 (qt, J = 14.0, 7.1 Hz, 3H), 1.98 - 1.86 (m, 1H), 1.39 (dt, J = 22.2, 7.2 Hz, 11H), 1.22 - 1.05 (m, 6H), 0.78 (dd, J = 9.7, 6.7 Hz, 10H).
Preparation of N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-valyl-N-{(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}-L-alaninamide 270
Step 1: 226 (214 mg, 0.36 mmol) was taken up in CH2Cl2 (2 mL) and TFA (0.5 mL) was added and after deprotection was complete solvent was removed. In a round bottom flask purged with N2, containing 262 (200 mg, 0.26 mmol)) in 5 mL of anhydrous DCM was added oxalyl chloride (0.024 mL, 0.26 mmol). To this solution was added 1 drop of DMF and the system was stirred for 3 hours. The reaction was concentrated by vacuum. The residue was taken up in DCM and added to a round bottom flask containing deprotected 226 in 15 mL of DCM and TEA (0.144 mL). The reaction was stirred at room temperature for 2 hours. The crude reaction mixture was concentrated by vacuum and taken up in 25 mL of DCM and transferred to a separatory funnel. Washed organic layer with 1M HCl (3x), Water (3x), and Brine (2x). Dried organic layer over Na2SO4 filtered and concentrated the filtrate to a crude solid. The crude products was purified by silica gel chromatography (Gradient: 0% to 10% MeOH in DCM) to give N-[(9H-fluoren-9-ylmethoxy)carbonyl]-L-valyl-N-[(1S)-3-[(3-{[(1S)-5-{[bis(benzyloxy)phosphoryl]oxy}-1-(chloromethyl)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl]-L-alaninamide 268 as a yellow solid (75 mg, 23%). LC-MS (Protocol B): m/z 1238 [M+H]+, retention time = 2.53 minutes.
Step 2: A stirring solution of 268 (75 mg, 0.061 mmol) in 5 mL of THF under nitrogen was cooled to 0 C using an ice bath. Palladium 10 wt. % on activated carbon (5 mg) was then added followed by the slow drop wise addition of 0.5 mL of 25% ammonium formate in water. The reaction was allowed to stir at 0 C. for 3 hours. Upon completion the reaction mixture was filtered through a pad of celite and the filtrate concentrated under vacuum. The crude product was taken up in Ethyl Acetate and the solids filtered to give L-valyl-N-{(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}-L-alanin 269 as a light yellow solid (20 mg, 30%). %). LC-MS (Protocol B): m/z 838 [M+H]+, retention time = 1.27 minutes.
Step 3: In a round bottom flask equipped with a stir bar and pentafluorophenyl 6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoate (9.0 mg, 0.024 mmol) was added 5 mL of anhydrous DCM and purged the system with N2. To this solution added 269 (20 mg, 0.024 mmol)) and TEA (.05 mL). The system was let to stir for 1 hour. The reaction was concentrated under vacuum and purified by HPLC Method N provided 270 (5 mg, 20%) retention time = 10.734 minutes. LC-MS (Protocol B): m/z 1031 [M+H]+, retention time = 1.54 minutes.
Preparation of Reference Example (2S,3S,4S,5R,6S)-6-(((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-(((2-((((4-((23S,26S)-1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosan-27-amido)benzyl)oxy)carbonyl)(methyl)amino)ethyl)(methyl)carbamoyl)oxy)-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)-3,4,5-trihydroxytetrahydro-2H-pyran-2-carboxylic acid 278.
Step 1. tert-Butyl (1S)-1-(chloromethyl)-5-hydroxy-1,2-dihydro-3H-benzo[e]indole-3-carboxylate 3 (683 mg, 2.05 mmol) was dissolved in DCM (70 mL), added 4Å MS (3.8 g, powder, <5 micro, activated), and the mixture was stirred at room temperature for 30 min. To the reaction mixture, alpha-D-glucuronide methyl ester 2,3,4-triacetate 1-2,2,2-trichloroethanimidate 271 (1178 mg, 2.45 mmol) was added, and cooled to -15°C. A solution of BF3·Et2O (0.13 mL, 1.02 mmol) in DCM (10 mL) was added slowly, and the reaction mixture was stirred at below -20°C for 1 h. To the mixture, a solution of BF3·Et2O (0.76 mL, 6 mmol) in DCM (10 mL) was added to remove the Boc group, and the reaction mixture was allow to warm to rt for 2 h. The mixture was filtered through a pad of Celite, and the filtrate was concentrated to give a green foam (sticky). It was added 4M HCl (2 mL), and concentrated again to give a green foam as crude product 272, 1130 mg (94%), which was used in next step without further purification.
Step 2. Mono-tBu ester of thiophene diacid 187 (189 mg, 0.83 mmol) was dissolved in THF (10 mL), cooled to 0C, and added oxalyl chloride (2M in DCM, 0.8 mL, 1.6 mmol), followed by DMF (2 drops). The mixture was stirred at 0C for 5 min, and then at room temperature for 1 h. Concentrated in vacuo to give the corresponding acid chloride as off-white solid. The above solids were mixed with 272 (246 mg, 0.42 mmol) and treated with THF (10 mL) at 0C, followed by Et3N (0.29 mL, 2 mmol). The mixture was stirred at 0C for 5 min, and room temperature for 30 min. The mixture was concentrated, and the residue was purified by column chromatography in silica gel using EA/Hep (50/50) to give the product as yellow solid 273 (302 mg, 90%) LC-MS: 760.1.
Step 3. 273 (790 mg, 1.04 mmol) was treated with TFA (2 mL) and DCM (4 mL) at rt for 1 h. concentrated to give a yellow solid. The solid was dissolved in THF (10 mL), cooled to 0C, added oxalyl chloride (2M in DCM, 1 mL, 2 mmol), followed by DMF (1 drop). The mixture was stirred at 0C for 5 min, and then rt for 1 h. Concentrated to give the acid chloride as a yellow solid. 3 (118 mg, 1.56 mmol) was treated with 4M HCl (4 mL) for 1 h. concentrated in vacuo to give the deBoc compound as green solid. It was dissolved in THF (10 mL), added a solution of the above acid chloride in THF (10 mL) at 0C, followed by addition of Et3N (0.58 mL, 4.16 mmol), and the mixture was stirred at rt for 30 min. The mixture was diluted with EA, washed with water and brine, dried over MgSO4. It was concentrated in nvacuo, and the residue was treated with MeOH, the resulting solid was collected by filtration to give the product as yellow solid 274 (668 mg, 70%). LC-MS: 919.1 Step 4. 274 (576 mg, 0.63 mmol) was dissolved in THF (20 mL), cooled to 0 C, added a solution of paranitrophenyl chloroformate (263 mg, 1.26 mmol) in DCM (2 mL), followed by Et3N (0.52 mL, 3.76 mmol). The mixture was stirred at 0C for 5 min, and then at rt for 2 h. LC-MS indicated completion of the formation of the carbonate. 213 (354 mg, 1.88 mmol) in THF (2 mL) was added to the above mixture, and stirred at rt for 30 min. The mixture was diluted with EtOAc, washed with water and brine, and dried over MgSO4. Concentrated in vacuo to give a solid residue, which was treated ith MeOH to form precipates. The resulting solid was collected by filtration to give the product as yellow solid 275 (550 mg, 77%).
Step 5. 275 (550 mg, 0.48 mmol) was dissolved in THF/MeOH (1/1, 10 mL), cooled to 0C, added a solution of LiOHH2O (206 mg, 4.8 mmol) in water (3 mL), and the mixture was stirred at 0C for 1 h. HOAc (300 mg) was added to neutralize the above solution, concentrated in vacuo. The residue was purified by Gilson HPLC (0.02% TFA) to give the product as yellow solid 276 (243 mg, 50%).
Step 6. 276 (50 mg, 0.05 mmol) was treated with pre-cooled TFA (2 mL) at 0C for 5 min, and concentrated in vacuo to give deBoc compound as yellow solid. The above solid was dissolved in DMF (2 mL), added 277 (48 mg, 0.05 mmol), followed by lutidine (0.035 mL, 0.3 mmol), DIPEA (0.052 m, 0.3 mmol), and HOAt (7 mg, 0.05 mmol). The mixture was stirred at 30C for 7 h. The crude was subjected to Gislon HPLC (0.02% TFA) to give the product 278 as yellow solid 39 mg (45%). LC-MS: 1715.8/1737.8 (1.71 min at Larry); 1713.7 (-).
Preparation of Reference Example (2S,3S,4S,5R,6S)-6-(((S)-3-(5-((S)-5-(((2-((((4-((S)-2-((S)-2-((S)-2-acetamido-6-aminohexanamido)-3-methylbutanamido)-5-ureidopentanamido) benzyl)oxy)carbonyl)(methyl)amino)ethyl) (methyl) carbamoyl)oxy)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)-3,4,5-trihydroxytetrahydro-2H-pyran-2-carboxylic acid 280
Preparation of Reference Example (S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-(((2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl (4-((23S,26S)-1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosan-27-amido)benzyl) ethane-1,2-diylbis(methylcarbamate)
Step 1. 3 (775 mg, 2.3 mmol) was dissolved in DCM (80 mL), added 4Å MS (6.2 g, poder, <5 micro, activated), and the mixture was stirred at room temperature for 30 min. To the reaction mixture, alpha-D-galactopanose, 2,3,4,6-tetraacetate 1-2,2,2-trichloroethanimidate 281 (1260 mg, 2.3 mmol) was added, and cooled to -15°C. a solution of BF3·Et2O (0.144 mL, 1.2 mmol) in DCM (10 mL) was added slowly, and the reaction mixture was stirred at -15°C - -20°C for 1 h. The reaction mixture was filtered through a pad of Celite, and the filtrate was concentrated. The crude was purified by ISCO using MeOH/DCM (0 - 20%) to give the product as green solid 282 (1400 mg, 91%).
Step 2. Mono-tBu ester of thiophene diacid 187 (300 mg, 1.3 mmol) was dissolved in THF (10 mL), cooled to 0C, and added oxalyl chloride (2M in DCM, 1 mL, 2 mmol), followed by DMF (2 drops). The mixture was stirred at 0C for 5 min, and then at room temperature for 1 h. Concentrated in vacuo to give the corresponding acid chloride as white solid. 282 (664 mg, 1 mmol) was treated with 4M HCl (4 mL) for 1 h at room temperature. It was concentrated in vacuo to give the deBoc amine green solid. The above solids were mixed with THF (10 mL) at 0C, added Et3N (0.83 mL, 6 mmol). The mixture was stirred at 0C for 5 min, and room temperature for 30 min. The mixture was diluted with EtOAc, washed with water and brine, dried over MgSO4. Concentrated in vacuo, and the residue was treated with MeOH, and concentrated again to give a solid residue, which was recrystallized from MeOH. The resulting yellow solid was collected by filtration to give the product as yellow solid 283 (500 mg, 65%).
Step 3. 283 (200 mg, 0.26 mmol) was dissolved in THF (6 mL), added oxalyl chloride (0.64 mL, 2M in DCM) at 0°C, followed by DMF (2 drops). The mixture was stirred at 0°C for 5 min, then room temperature for 0.5 h. Concentrated in vacuo to give the corresponding acid chloride as yellow solid. 3 (138 mg, 0.41 mmol) was treated with 4M HCl (1 mL in dioxane) for 2 h. concentrated in vacuo to give the deBoc amine as green form. This was dissolved in THF (5 mL), added the above acid chloride in THF (5 mL) at 0°C, followed by Et3N (0.23 mL, 1.55 mmol). The mixture was stirred at 0°C for 5 min, then room temperature for 1 h. The mixture was diluted with EtOAc, washed with water and brine, dried over MgSO4. Concentrated in vacuo to give a solid residue, which was treated with MeOH, and the resulting solid was collected by filtration and washed with ether to give the product as yellow solid. The filtrate was concentrated, and purified by Gilson HPLC separation using ACN/water (0.02% TFA) to give the product as yellow solid 284 (200 mg, 83%).
Step 4. 284 (68 mg, 0.073 mmol) was dissolved in THF (3 mL), cooled to 0°C, a solution of 4-nitrophenyl chloroformate (46 mg, 0.22 mmol) in DCM (0.6 mL) was added, followed by Et3N (0.061 mL, 0.44 mmol). The mixture was stirred at 0°C for 5 min, and room temperature for 1 h to provide 285. To the above reaction mixture was added N-Boc DMEDA (55 mg, 0.29 mmol), and stirred at room temperature for additional 1 h. Concentrated in vacuo, and the residue was purified by Gilson HPLC to give the product as yellow solid 286 (65 mg, 78%).
Step 5. 286 (10 mg, 0.009 mmol) was dissolved in MeOH (1 mL) at 0C, added MeONa (0.054 mL, 0.5M in MeOH, 0.027 mmol), and the mixture was stirred at 0C for 5 min. The mixture was neutralized with HOAc (0.4 mL, 0.1M in MeOH), and conecntrated in vacuo to give the product as yellow solid. It was treated pro-cooled TFA (0.8 mL) for 2 min, and concentrated in vacuo to give the deBoc compound as yellow solid 287 (8.3 mg, 90%).
Step 6. 287 (8.3 mg, 0.008 mmol) was dissolved in DMF (1 mL), added Malc-Peg6C2ValCitPABC (9.6
mg, 0.01 mmol), followed by Lutidine (0.004 mL), DIPEA (0.006 mL) and HOAt (1.1 mg,
0.008 mmol). The mixture was stirred at room temperature for 4 h. The crude was purified
by Gilson HPLC (0.02% TFA) to give the product 288 as yellow solid (4 mg, 30%). 1H NMR (400MHz, METHANOL-d4)
= 8.42 (d, J=8.2 Hz, 1H), 8.15 (d, J=7.4 Hz, 1H), 7.95 (d, J=8.2 Hz, 1H), 7.91 (d, J=8.2 Hz, 1H), 7.84 (d, J=8.6 Hz, 1H), 7.80 - 7.66 (m, 2H), 7.63 - 7.48 (m, 4H), 7.43 (br. s., 3H), 7.23 (d,
J=7.8 Hz, 1H), 6.81 (s, 2H), 5.26 - 5.12 (m, 2H), 5.09 (d, J=8.6 Hz, 1H), 4.71 - 4.54 (m, 4H), 4.49 (br. s., 1H), 4.33 - 4.15 (m, 3H), 4.10 -
3.95 (m, 4H), 3.93 - 3.77 (m, 6H), 3.77 - 3.64 (m, 8H), 3.64 - 3.54 (m, 24H), 3.51
(br. s., 1H), 3.23 - 3.03 (m, 5H), 3.03 - 2.95 (m, 2H), 2.60 - 2.51 (m, 2H), 2.13
(d, J=7.0 Hz, 1H), 1.90 (br. s., 1H), 1.72 (br. s., 1H), 1.57 (br. s., 2H), 0.99 (t, J=6.4 Hz, 6H). LC-MS: 1702.3/829.9/748.7
Preparation of Reference Example 4-((23S,26S)-1-amino-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosan-27-amido)benzyl ((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-(((2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl) ethane-1,2-diylbis(methylcarbamate) 289
Step 1. BocValCitPABC 287 (30.9 mg, 0.048 mmol) was added to a solution of 286 (32 mg, 0.032 mmol) in DMF (2 mL), followed by lutidine (0.015 mL), DIPEA (0.022 mL) and HOAt (4.4 mg). The mixture was stirred at rt for 5 h. The crude was subjected to Gilson HPLC separation (0.02% TFA) to give the product as yellow solid 288 (32 mg, 72%).
Step 2. 288 (16 mg, 0.012 mmol) was treated with pre-cooled TFA (1 mL) for 5 min, and concentrated in vacuo to give deBoc compound as yellow solid. The above solid was dissolved in DMF (0.5 mL), added DIPEA (0.013 mL), followed by a solution of 206 (12 mg, 0.016 mmol) in DCM (0.1 mL). The mixture was stirred at room temperature for 1 h. To the above solution was added piperidine (0.2 mL), and stirred for 30 min. Concentrated in vacuo, the residue was purified by Gilson HPLC using ACN/water (0.02% TFA) to give the product 289 as yellow solid (8 mg, 40%). 1H NMR (400MHz, DMSO-d6) δ = 9.89 (br. s., 1H), 8.35 - 8.21 (m, 1H), 8.15 - 8.00 (m, 2H), 7.96 (d, J=7.8 Hz, 1H), 7.91 - 7.84 (m, 1H), 7.84 - 7.72 (m, 4H), 7.63 (br. s., 2H), 7.58 - 7.50 (m, 3H), 7.50 - 7.44 (m, 2H), 7.40 (d, J=6.2 Hz, 2H), 7.18 (br. s., 2H), 5.90 (br. s., 1H), 5.06 - 4.90 (m, 2H), 4.87 (d, J=7.4 Hz, 1H), 4.83 - 4.68 (m, 2H), 4.42 (t, J=12.3 Hz, 2H), 4.32 (br. s., 2H), 4.23 (br. s., 1H), 4.19 - 4.11 (m, 1H), 4.10 - 3.95 (m, 3H), 3.95 - 3.80 (m, 2H), 3.77 - 3.62 (m, 3H), 3.60 - 3.46 (m, 15H), 3.15 (br. s., 2H), 3.06 (br. s., 1H), 2.89 (d, J=5.1 Hz, 3H), 2.92 (d, J=5.1 Hz, 3H), 2.86 - 2.74 (m, 3H), 2.35 - 2.21 (m, 1H), 1.96 - 1.82 (m, 1H), 1.61 (br. s., 1H), 1.52 (br. s., 1H), 1.43 - 1.21 (m, 2H), 0.76 (d, J=6.6 Hz, 3H), 0.79 (d, J=6.2 Hz, 3H); 1622.2 [M+H]+;
| Table 3 - Additional Linker Payloads and Reference Linker Payloads | |||
| ID | Structure | Prepared Using Method Similar to Compound ID | MS: m/z |
| 292 |
|
198 | 1042.2 [M+H]+ |
| 293 |
|
198 | 921.1 [M+Na] |
| 294 |
|
198 | 1659.70 [M+3H]+ |
| 295 |
|
198 | 1647.1 [M+3H]+ |
| 296 |
|
198 | 1614.6 [M-H] |
| 297 |
|
1041 | 1454.5 [M+H]+ |
| 298 |
|
198 | 1629.6 [M+H]+ |
| 299 |
|
198 | 1705.6 [M+H]+ |
| 300 |
|
198 | 1372.4 [M+H]+ |
| 301 |
|
198 | 1599.6 [M+H]+ |
| 302 |
|
198 | 1625.6 [M+H]+ |
| 303 |
|
198 | 1619.5 [M+H]+ |
| 304 |
|
198 | 1539.5 [M+H]+ |
| 305 |
|
291 | 1633.6 [M+H]+ |
| 306 |
|
250 | 1199.3 [M+H]+ |
| 307 |
|
250 | 1227.1 [M+H]+ |
| 308 |
|
267 | 895.7 [M+H]+ |
| 309 |
|
250 | 1213.1 [M+H]+ |
| 310 |
|
250 | 1009.9 [M+H]+ |
| 311 |
|
267 | 892.9 [M+H]+ |
| 312 |
|
267 | 889.2 [M+H]+ |
| 313 |
|
267 | 880.9 [M+H]+ |
| 314 |
|
291 | 1618.6 [M+H]+ |
| 315 |
|
280 | 1453.9 [M+H]+ |
| 316 |
|
204 | 1604.2 [M+H]+ |
| Table 4 - Additional Linker-Payloads and Reference Linker Payloads, IUPAC names | |
| ID | Chemical Name |
| 292 | (1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-({[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-13-methyl-12-oxo-3,6,9-trioxa-13-azapentadecan-15-yl](methyl)carbamoyl}oxy)-1,2-dihydro-3H-benzo[e]ind ol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl acetate |
| 293 | (1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-{[(2-{2-[2-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)ethoxy]ethoxy}ethyl)carbamoyl]oxy}-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl acetate |
| 294 | N-(24-bromo-23-oxo-4,7,10,13,16,19-hexaoxa-22-azatetracosan-1-oyl)-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide |
| 295 | N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](ethyl)amino}ethyl)(ethyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide |
| 296 | 3-[(2,2-dimethylpropoxy)sulfonyl]-N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-alanyl-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide |
| 297 | 4-((S)-2-((S)-2-((S)-2-acetamido-6-aminohexanamido)-3-methylbutanamido)-5-ureidopentanamido)benzyl ((S)-1-(chloromethyl)-3-(5-((S)-1-(chloromethyl)-5-(((2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy)-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)ethane-1,2-diylbis(methylcarbamate) |
| 298 | N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}furan-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](ethyl)amino}ethyl)(ethyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide |
| 299 | N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N∼5∼-carbamoyl-N-(4-{7-[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl]-4-(2-methoxyethyl)-3-oxo-2,10-dioxa-4,7-diazaundec-1-yl}phenyl)-L-ornithinamide |
| 300 | N∼2∼-acetyl-L-lysyl-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-di hydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide |
| 301 | N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N∼5∼-carbamoyl-N-(4-{[({4-[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl]piperazin-1-yl}carbonyl)oxy]methyl}phenyl)-L-ornithinamide |
| 302 | N-(21-amino-4,7,10,13,16,19-hexaoxahenicosan-1-oyl)-L-valyl-N∼5∼-carbamoyl-N-(4-{7-[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}th iophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl]-4-(2-methoxyethyl)-3-oxo-2,10-dioxa-4,7-diazaundec-1-yl}phenyl)-L-ornithinamide |
| 303 | N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N-(4-{7-[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl]-4-(2-methoxyethyl)-3-oxo-2,10-dioxa-4,7-diazaundec-1-yl}phenyl)-L-alaninamide |
| 304 | N-(21-amino-4,7,10,13,16,19-hexaoxahenicosan-1-oyl)-L-valyl-N-(4-{7-[({(1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)car bonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl]-4-(2-methoxyethyl)-3-oxo-2,10-dioxa-4,7-diazaundec-1-yl}phenyl)-L-alaninamide |
| 305 | (2S,3S,4S,5R,6S)-6-(((S)-3-(5-((S)-5-(((2-((((4-((23S,26S)-1-amino-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosan-27-amido)benzyl)oxy)carbonyl)(methyl)amino)ethyl)(methyl)carbamoyl)oxy)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indole-3-carbonyl)thiophene-2-carbonyl)-1-(chloromethyl)-2,3-dihydro-1H-benzo[e]indol-5-yl)oxy)-3,4,5-trihydroxytetrahydro-2H-pyran-2-carboxylic acid |
| 306 | 3-[(2-{[(2-{[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}ethyl)disulfanyl]-N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-alanine |
| 307 | 3-[(2-{[(2-{[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)c arbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}ethyl)disulfanyl]-N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-valine |
| 308 | (1S)-1-(chloromethyl)-3-[(5-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}thiophen-2-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl [2-(pyridin-2-yldisulfanyl)ethyl]carbamate |
| 309 | 3-{[(2R)-1-{[(2-{[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl} oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}propan-2-yl]disulfanyl}-N-[6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanoyl]-L-alanine |
| 310 | (1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl(2R)-2-(pyridin-2-yl disulfanyl)propyl ethane-1,2-diylbis(methylcarbamate) |
| 311 | (1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-ylmethyl[2-(pyridin-2-yldisulfanyl)ethyl]carbamate |
| 312 | (1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl[6-(2,5-dioxo-2,5-di hydro-1H-pyrrol-1-yl)hexyl]carbamate |
| 313 | (1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl[2-(pyridin-2-yldisulfanyl)ethyl]carbamate |
| 314 | N-(21-amino-4,7,10,13,16,19-hexaoxahenicosan-1-oyl)-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(beta-D-glucopyranuronosyloxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide |
| 315 | N∼2∼-acetyl-L-lysyl-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(beta-D-glucopyranuronosyloxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide |
| 316 | N-[1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-21-oxo-3,6,9,12,15,18-hexaoxahenicosan-21-yl]-L-valyl-N∼5∼-carbamoyl-N-[4-({[(2-{[({(1S)-1-(chloromethyl)-3-[(3-{[(1S)-1-(chloromethyl)-5-(phosphonooxy)-1,2-dihydro-3H-benzo[e]indol-3-yl]carbonyl}bicyclo[1.1.1]pent-1-yl)carbonyl]-2,3-dihydro-1H-benzo[e]indol-5-yl}oxy)carbonyl](methyl)amino}ethyl)(methyl)carbamoyl]oxy}methyl)phenyl]-L-ornithinamide |
| Table 5A Representative Thiocarbamate Linker Payoads | |||
| ID | Structure | Suggested method of synthesis | M/S (predicted) |
| 317 |
|
231 | 1622.57 |
| 4-((23S,26S)-1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosan-27-amido)benzyl (2-(((((S)-8-(chloromethyl)-6-(3-((S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,2,3,6-tetrahydropyrrolo[3,2-e]indole-3-carbonyl)bicyclo[1.1.1]pentane-1-carbonyl)-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl)oxy)carbonothioyl)(methyl)amino)ethyl)(methyl)carbamate | |||
| 318 |
|
231 | 1622.57 |
| (S)-8-(chloromethyl)-6-(3-((S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,2,3,6-tetrahydropyrrolo[3,2-e]indole-3-carbonyl)bicyclo[1.1.1]pentane-1-carbonyl)-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl (2-((((4-((23S,26S)-1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosan-27-amido)benzyl)oxy)carbonothioyl)(methyl)amino)ethyl)(methyl)carbamate | |||
| 319 |
|
231 | 1641.65 |
| O'-((S)-8-(chloromethyl)-6-(3-((S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,2,3,6-tetrahydropyrrolo[3,2-e]indole-3-carbonyl)bicyclo[1.1,1]pentane-1-carbonyl)-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl) O-(4-((23S,26S)-1-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)-23-isopropyl-21,24-dioxo-26-(3-ureidopropyl)-3,6,9,12,15,18-hexaoxa-22,25-diazaheptacosan-27-amido)benzyl) ethane-1,2-diylbis(methylcarbamothioate) | |||
| 320 |
|
237 | 1377.49 |
| 4-((S)-2-((S)-2-((S)-2-acetamido-6-aminohexanamido)-3-methylbutanamido)-5-ureidopentanamido)benzyl (2-(((((S)-8-(chloromethyl)-6-(3-((S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,2,3,6-tetrahydropyrrolo[3,2-e]indole-3-carbonyl)bicyclo[1.1.1]pentane-1-carbonyl)-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl)oxy)carbonothioyl)(methyl)amino)ethyl)(methyl)carbamate | |||
| 321 |
|
237 | 1377.49 |
| (S)-8-(chloromethyl)-6-(3-((S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,2,3,6-tetrahydropyrrolo[3,2-e]indole-3-carbonyl)bicyclo[1.1.1]pentane-1-carbonyl)-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl (2-((((4-((S)-2-((S)-2-((S)-2-acetamido-6-aminohexanamido)-3-methylbutanamido)-5-ureidopentanamido)benzyl)oxy)carbonothioyl)(methyl)amino)et hyl)(methyl)carbamate | |||
| 322 |
|
237 | 1393.47 |
| O-(4-((S)-2-((S)-2-((S)-2-acetamido-6-aminohexanamido)-3-methylbutanamido)-5-ureidopentanamido)benzyl) O'-((S)-8-(chloromethyl)-6-(3-((S)-1-(chloromethyl)-8-methyl-5-(phosphonooxy)-1,2,3,6-tetrahydropyrrolo[3,2-e]indole-3-carbonyl)bicyclo[1.1.1]pentane-1-carbonyl)-1-methyl-3,6,7,8-tetrahydropyrrolo[3,2-e]indol-4-yl) ethane-1,2-diylbis(methylcarbamothioate) | |||
| Table 5B Representative Cubane Linker Payoads | |||
| ID | Structure | Method of synthesis | M/S (predicted) |
| 323 |
|
237 | 1392.5 [M+H]+ |
| 324 |
|
231 | 1636.1 [M+H]+ |
HPLC and LC-MS Conditions Used for Analysis
Protocol A: Column: Waters Acquity UPLC HSS T3, 2.1 mm x 50 mm, C18, 1.7µm; Mobile phase A: : 0.1% formic acid in water (v/v); Mobile phase B: 0.1% formic acid in acetonitrile (v/v); Gradient: 5% B over 0.1 minute, 5% to 95% B over 0.9 minutes, 95% B over 0.1 minute; Flow rate: 1.25 mL/minute. Temperature: 60 °C; Detection: 200-450nm; MS (+) range 100-2000 daltons; Injection volume: 5 µL; Instrument: Waters Acquity.
Protocol B: Column: Waters Acquity UPLC HSS T3, 2.1 mm x 50 mm, C18, 1.7µm; Mobile phase A: : 0.1% formic acid in water (v/v); Mobile phase B: 0.1% formic acid in acetonitrile (v/v); Gradient: 5% B over 0.1 minute, 5% to 95% B over 2.5 minutes, 95% B over 0.35 minute; Flow rate: 1.25 mL/minute. Temperature: 60 °C; Detection: 200-450nm; MS (+) range 100-2000 daltons; Injection volume: 5 µL; Instrument: Waters Acquity.
Protocol C: Column: Phenomenex Luna C18 (2), 150 x 3.0 mm, 5 µm; Mobile phase A: 0.1% formic acid in water (v/v); Mobile phase B: 0.1% formic acid in acetonitrile (v/v); Gradient: 50% B over 1.5 minutes, 50% to 100% B over 6.5 minutes, then 100% B over 3 minutes; Flow rate: 0.75 mL/minute. Temperature: 45 °C; Detection: DAD 215 nm, 254 nm; MS (+) range 150-2000 daltons; Injection volume: 10 µL; Instrument: Agilent 1200 LCMS.
Protocol D: Column: Phenomenex Luna C18 PFP(2), 150 x 3.0 mm, 5 µm; Mobile phase A: 0.1% formic acid in water (v/v); Mobile phase B: 0.1% formic acid in acetonitrile (v/v); Gradient: 0% to 5% B over 1.5 minutes, 5% to 100% B over 8.5 minutes, then 100% B over 2 minutes; Flow rate: 0.75 mL/minute. Temperature: not controlled; Detection: DAD 215 nm, 254 nm; MS (+) range 150-2000 daltons; Injection volume: 10 µL; Instrument: Agilent 1200 LCMS.
Protocol E: Column: Phenomenex Luna C18 PFP(2), 150 x 3.0 mm, 5 µm; Mobile phase A: 0.1% formic acid in water (v/v); Mobile phase B: 0.1% formic acid in acetonitrile (v/v); Gradient: 5% B over 1.5 minutes, 5% to 100% B over 8.5 minutes, then 100% B over 2 minutes; Flow rate: 0.75 mL/minute. Temperature: not controlled; Detection: DAD 215 nm, 254 nm; MS (+) range 150-2000 daltons; Injection volume: 10 µL; Instrument: Agilent 1200 LCMS.
Protocol F: Column: Xtimate C18, 30 x 2.1 mm, 3 µm; Mobile phase A: 0.037% TFA in water (v/v); Mobile phase B: 0.037% TFA in acetonitrile (v/v); Gradient: 10% B over 0.1 minutes, 10% to 80% B over 3 minutes, then 80% B over 0.1 minutes; Flow rate: 1.5 mL/minute. Temperature: 40°C; Detection: DAD 220 nm; MS (+) range 100-1000 daltons; Injection volume: 3 µL; Instrument: Shimadzu.
Protocol G: Column: Xtimate C18, 30 x 2.1 mm, 3 µm; Mobile phase A: 0.037% TFA in water (v/v); Mobile phase B: 0.037% TFA in acetonitrile (v/v); Gradient: 10% B over 0.1 minutes, 10% to 80% B over 3 minutes, then 80% B over 0.1 minutes; Flow rate: 1.5 mL/minute. Temperature: 40°C; Detection: DAD 220 nm; MS (+) range 100-1000 daltons; Injection volume: 3 µL; Instrument: Shimadzu.
Protocol H: Column: Xtimate C18, 30 x 2.1 mm, 3 µm; Mobile phase A: 0.037% TFA in water (v/v); Mobile phase B: 0.037% TFA in acetonitrile (v/v); Gradient: 0% B over 0.1 minutes, 0% to 60% B over 2 minutes, then 60% B over 0.1 minutes; Flow rate: 1.5 mL/minute. Temperature: 40°C; Detection: DAD 220 nm; MS (+) range 100-1000 daltons; Injection volume: 2 µL; Instrument: Shimadzu.
HPLC Conditions Used for Purification
Method A: Column: Phenomenex Luna C18(2), 150 x 21.2 mm, 5 µm; Mobile phase A: 0.02% formic acid in water; Mobile phase B: 0.02% formic acid in acetonitrile; Gradient: 40% B over 1.5 minutes, 40% to 100% B over 8.5 minutes, 100% B over 0.5 minutes; Flow rate: 27 mL/minute; Detection: DAD 215 nm, 254 nm; MS (+) range 150-2000 daltons; Instrument: Waters FractionLynx.
Method B: Column: Phenomenex Luna PFP (2), 150 x 21.2 mm, 5 µm; Mobile phase A: 0.02% formic acid in water; Mobile phase B: 0.02% formic acid in acetonitrile; Gradient: 30% B over 1.5 minutes, 30% to 60% B over 8.5 minutes, 60% B to 100% B over 0.5 minutes, 100% B over 2 minutes; Flow rate: 27 mL/minute; Detection: DAD 215 nm, 254 nm; MS (+) range 150-2000 daltons; Instrument: Waters FractionLynx.
Method C: Column: Phenomenex Synergi Polar RP, 150 x 21.2 mm, 4 µm; Mobile phase A: 0.02% formic acid in water; Mobile phase B: 0.02% formic acid in acetonitrile; Gradient: 20% B over 1.5 minutes, 20% to 50% B over 8.5 minutes, 50% B to 100% B over 0.5 minutes, 100% B over 2 minutes; Flow rate: 27 mL/minute; Detection: DAD 210-360 nm; MS (+) range 150-2000 daltons; Instrument: Waters FractionLynx.
Method D: Column: Xtimate C18, 30 x 2.1 mm, 3 µm; Mobile phase A: 0.2% TFA in water (v/v); Mobile phase B: 0.2% TFA in acetonitrile (v/v); Gradient: 25% B over 1.5 minutes, 25% to 50% B over 25 minutes, then 100% B over 5.0 minutes; Flow rate: 90 mL/minute. Temperature: not controlled; Detection: DAD 220 nm; MS (+) range 100-1000 daltons; Instrument: Shimadzu.
Method E: Column: LUNA C18, 250 x 50 mm, 10 µm; Mobile phase A: 0.2% TFA in water (v/v); Mobile phase B: 0.2% TFA in acetonitrile (v/v); Gradient: 25% B over 1.5 minutes, 25% to 55% B over 25 minutes, then 100% B over 5.0 minutes; Flow rate: 90 mL/minute. Temperature: not controlled; Detection: DAD 220 nm; MS (+) range 100-1000 daltons; Instrument: Shimadzu.
Method F: Column: Phenomenex Luna C18(2), 250 x 50 mm, 10 µm; Mobile phase A: 0.2% TFA in water (v/v); Mobile phase B: 0.2% TFA in acetonitrile (v/v); Gradient: 35% to 65% B over 30 minutes, then 100% B over 5.0 minutes; Flow rate: 90 mL/minute. Temperature: not controlled; Detection: DAD 220 nm; MS (+) range 100-1000 daltons; Instrument: Shimadzu.
Method G: Column: Phenomenex Luna C18(2), 250 x 50 mm, 10 µm; Mobile phase A: 0.2% TFA in water (v/v); Mobile phase B: 0.2% TFA in acetonitrile (v/v); Gradient: 10% B over 1.5 minutes, 10% B to 55% B over 8.5 minutes, 55% B to 100% B over 0.5 minutes, then held at 100% B for 1.5 minutes; Flow rate: 27 mL/minute. Temperature: not controlled; Detection: DAD 210-360 nm; MS (+) range 150-2000 daltons; Instrument: 305 RP Waters Fractional Lynx LCMS
Method H: Column: Phenomenex Luna C18(2), 150 x 21.2 mm, 5 µm; Mobile phase A: 0.2% TFA in water (v/v); Mobile phase B: 0.2% TFA in acetonitrile (v/v); Gradient: 10% B over 1.5 minutes, 10% B to 75% B over 8.5 minutes, then 75% B to 100% B over 2.0 minutes; Flow rate: 27 mL/minute. Temperature: not controlled; Detection: DAD 210-360 nm; MS (+) range 150-2000 daltons; Instrument: 305 RP Waters Fractional Lynx LCMS.
Method H1: Column: Phenomenex Luna C18(2), 150 x 21.2 mm, 5 µm; Mobile phase A: 0.2% TFA in water (v/v); Mobile phase B: 0.2% TFA in acetonitrile (v/v); Gradient: 1% B over 1.5 minutes, 1% B to 100% B over 8.5 minutes, then 100% B over 2.0 minutes; Flow rate: 27 mL/minute. Temperature: not controlled; Detection: DAD 210-360 nm; MS (+) range 150-2000 daltons; Instrument: 305 RP Waters Fractional Lynx LCMS.
Method I1: Column: Phenomenex Luna PFP (2), 150 x 21.2 mm, 5 µm; Mobile phase A: 0.02% TFA in water; Mobile phase B: 0.02% TFA in acetonitrile; Gradient: 40% B over 1.5 minutes, 40% to 100% B over 8.5 minutes, 100% B over 2.0 minutes; Flow rate: 27 mL/minute; Detection: DAD 215 nm, 254 nm; MS (+) range 150-2000 daltons; Instrument: 305 Waters FractionLynx LCMS.
Method 12: Column: Phenomenex Luna PFP (2), 150 x 21.2 mm, 5 µm; Mobile phase A: 0.02% TFA in water; Mobile phase B: 0.02% TFA in acetonitrile; Gradient: 1% B over 1.5 minutes, 1% to 100% B over 8.5 minutes, 100% B over 2.0 minutes; Flow rate: 27 mL/minute; Detection: DAD 215 nm, 254 nm; MS (+) range 150-2000 daltons; Instrument: 305 Waters FractionLynx LCMS.
Method J1: Column: Phenomenex Synergi Polar RP, 150 x 21.2 mm, 4 µm; Mobile phase A: 0.02% TFA in water; Mobile phase B: 0.02% TFA in acetonitrile; Gradient: 10% B over 1.5 minutes, 10% to 75% B over 8.5 minutes, 75% B to 100% B over 0.5 minutes, 100% B over 2 minutes; Flow rate: 27 mL/minute; Detection: DAD 210-360 nm; MS (+) range 150-2000 daltons; Instrument: Waters FractionLynx.
Method K1: Column: Phenomenex Luna C18(2), 250 x 50 mm, 10 µm; Mobile phase A: 0.2% TFA in water (v/v); Mobile phase B: 0.2% TFA in acetonitrile (v/v); Gradient: 1% B over 1.5 minutes, 1% B to 75% B over 8.5 minutes, 75% B to 100% B over 0.5 minutes, then held at 100% B for 1.5 minutes; Flow rate: 27 mL/minute. Temperature: not controlled; Detection: DAD 210-360 nm; MS (+) range 150-2000 daltons; Instrument: 305 RP Waters Fractional Lynx LCMS.
Method L1: Column: ChiralTech AD-H, 500 X 21.5 mm, 5 µm; Mobile phase A: CO2 (v/v); Mobile phase B: methanol (v/v); Gradient: Iscocractic conditions 60% CO2, 40% methanol; Flow rate: 36 mL/minute CO2, 24 mL/minute methanol. Backpressure 100 bar; Detection: DAD 210; Instrument: Thar 80 (Waters).
Method M: Column: Phenomenex Synergi, 250 x 50 mm, 10 µm; Mobile phase A: 0.1% TFA in water; Mobile phase B: 0.1% TFA in acetonitrile; Gradient: 40% to 70% B over 30 minutes, then 95% B over 5.0 minutes; Flow rate: 80 mL/minute; Detection: DAD 220, 254 nm; MS (+) range 100-1000 daltons; Instrument: Shimadzu LC-20AP.
Method N Column: Phenomenex Luna Phenylhexyl 150 x 21.2 mm, 5 µm; Mobile phase A: 0.2% TFA in water (v/v); Mobile phase B: 0.2% TFA in acetonitrile (v/v); Gradient: 35% B over 1.5 minutes, 35% B to 100% B over 18.5 minutes, then 100% B over 2.0 minutes; Flow rate: 27 mL/minute. Temperature: not controlled; Detection: DAD 210-360 nm; MS (+) range 150-2000 daltons; Instrument: 305 RP Waters Fractional Lynx LCMS.
Exemplification of Antibody Drug Conjugates
| Table 6A Antibody Drug Conjugates and Reference Antibody Drug Conjugates | |
| ID | Structure |
| ADC1 |
|
| ADC2 |
|
| ADC3 |
|
| ADC4 |
|
| ADC5 |
|
| ADC6 |
|
| ADC7 |
|
| ADC8 |
|
| ADC9 |
|
| ADC10 |
|
| ADC11 |
|
| ADC12 |
|
| ADC13 |
|
| ADC14 |
|
Exemplified ADCs - Analytical Data
| Table 7 - ADC Analytical Data | ||||
| ADC ID | Linker/Payload ID | Theoretical Δ mass or linker-payload molecular weight | Mass Spectra: SEC-HPLC retention time and HPLC Δ mass for the Light Chain (LC) portion | Loading or Drug per Antibody Ratio (DAR) |
| ADC1 | 223 | 1618 | SEC (Protocol C): 6.352 minutes; HPLC (Protocol B): LC Δ mass = 1619 | 4.0 |
| ADC2 | 189 | 1545 | SEC (Protocol C): 6.388 minutes; HPLC (Protocol B): LC Δ mass = 1545 | 2.7 |
| ADC3 | 298 | 1630 | SEC (Protocol C): 6.276 minutes; HPLC (Protocol B): LC Δ mass = 1631 | 5.2 |
| ADC4 | 299 | 1706 | SEC (Protocol C): 6.331 minutes; HPLC (Protocol B): LC Δ mass = 1707 | 3.5 |
| ADC5 | 303 | 1620 | SEC (Protocol C): 6.323 minutes; HPLC (Protocol B): LC Δ mass = 1621 | 3.3 |
| ADC6 | 231 | 1607 | SEC (Protocol C): 6.606 minutes; HPLC (Protocol B): LC Δ mass = 1609 | 3.2 |
| ADC7 | 266 | 1032 | SEC (Protocol C): 6.637 minutes; HPLC (Protocol B): LC Δ mass = 1032 | 3.9 |
| ADC8 | 279 | 1029 | SEC (Protocol C): 6.639 minutes; HPLC (Protocol B): LC Δ mass = 1030 | 4.1 |
| ADC9 | 278 | 1713 | SEC (Protocol C): 5.779 minutes; HPLC (Protocol B): LC Δ mass = 1716 | 5.1 |
| ADC10 | 231 | 1607 | SEC (Protocol C): 6.567 minutes; HPLC (Protocol B): LC Δ mass = 1609 | 3.3 |
| ADC11 | 266 | 1032 | SEC (Protocol C): 6.590 minutes; HPLC (Protocol B): LC Δ mass = 1032 | 4.6 |
| ADC12 | 279 | 1029 | SEC (Protocol C): 6.582 minutes; HPLC (Protocol B): LC Δ mass = 1030 | 4.5 |
| ADC13 | 278 | 1713 | SEC (Protocol C): 5.577 minutes; HPLC (Protocol B): LC Δ mass = 1718 | 4 |
| ADC14 | 294 | 1578 | SEC (Protocol C): 6.491 minutes; HPLC (Protocol B): LC Δ mass = 1578 | 3.1 |
Experimental procedures for biological assessment of payloads and antibody drug conjugates
Cell lines
Cytotoxicity Assay Procedure for Payloads
Cytotoxicity Assay Procedure for ADCs
| Table 8 - Payload IC50 Data | ||
| compound Number | N87 IC50 (nM) | HL-60 IC50 (nM) |
| 13 | 0.138 | 0.014 |
| 16 | 1.761 | 0.163 |
| 18 | 173.740 | 2.188 |
| 20 | 296.612 | 1.624 |
| 23 | 0.252 | 0.072 |
| 26 | 10.000 | - |
| 29 | 0.009 | <0.001 |
| 32 | 0.052 | 0.005 |
| 35 | 1.210 | - |
| 38 | 10.000 | - |
| 40 | 1.882 | 0.177 |
| 44 | 10.000 | 5.292 |
| 48 | 12.163 | 1.754 |
| 53 | - | 0.012 |
| 56 | 100.000 | 6.934 |
| 60 | 10.000 | - |
| 65 | 0.554 | 0.004 |
| 68 | 0.033 | - |
| 71 | 0.085 | - |
| 74 | 76.494 | 7.488 |
| 79 | 7.962 | 0.496 |
| 82 | 3.242 | 0.359 |
| 85 | 0.053 | 0.005 |
| 88 | 0.502 | 0.022 |
| 91 | 0.057 | 0.004 |
| 97 | 0.222 | 0.009 |
| 108 | 3.981 | 0.431 |
| 109 | 2.296 | 0.095 |
| 115 | 1.439 | 0.015 |
| 117 | 0.004 | - |
| 119 | 0.004 | - |
| 123 | 0.003 | - |
| 126 | 0.004 | - |
| 130 | 1.804 | 0.227 |
| 134 | - | 0.099 |
| 135 | 0.019 | 0.005 |
| 136 | 0.003 | 0.005 |
| 141 | 12.689 | 0.361 |
| 142 | 100.000 | 10.000 |
| 143 | 100.000 | 10.000 |
| 144 | >10.000 | 3.004 |
| 145 | 0.130 | 0.051 |
| 146 | 3.102 | - |
| 147 | 0.017 | 0.003 |
| 149 | 0.132 | 0.007 |
| 152 | 0.278 | 0.008 |
| 153 | 4.474 | |
| 154 | 0.026 | 0.003 |
| 156 | 10.000 | 61.079 |
| 157 | 10.000 | 77.406 |
| 158 | 14.334 | 4.911 |
| 159 | 2.389 | 0.045 |
| 160 | 12.692 | - |
| 161 | 10.000 | 27.250 |
| 162 | 0.749 | 0.020 |
| 163 | 6.895 | 0.179 |
| 164 | - | 0.057 |
| 165 | 8.259 | 0.107 |
| 166 | 5.689 | 0.659 |
| 167 | 10.000 | 1.451 |
| 168 | - | 0.097 |
| 169 | 9.821 | 0.388 |
| 170 | 0.005 | - |
| 171 | 1.554 | 0.131 |
| 172 | 13.800 | 0.474 |
| 173 | 13.097 | 0.169 |
| 174 | 87.918 | 1.971 |
| 175 | - | 11.843 |
| 176 | 26.413 | 0.199 |
| 177 | 2.125 | 0.196 |
| 178 | 0.484 | 0.036 |
| 179 | 172.553 | 14.322 |
| 180 | 0.425 | 0.048 |
| 181 | 0.005 | - |
| Table 9-ADC IC50 Data | ||
| ID | A375 IC50 ng/ml | HUVEC IC50 ng/ml |
| ADC1 | 0.15 | - |
| ADC2 | 6.36 | - |
| ADC3 | 2.64 | - |
| ADC4 | 0.14 | - |
| ADC5 | 0.14 | - |
| ADC6 | 0.8 | - |
| ADC7 | 2.0 | - |
| ADC8 | 1.8 | - |
| ADC9 | 0.2 | - |
| ADC10 | - | 9.4 |
| ADC11 | - | 137 |
| ADC12 | - | 7655 |
| ADC13 | - | 5.92 |
| ADC14 | - | 0.88 |
F1 and F2 are each independently selected from ring systems A, B, C and D:
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, or -C1-C5 alkyl, for each ring system in which W1 and W2 appear;
each X is independently -OH, -O-acyl, azido, halo, cyanate, thiocyanate, isocyanate,
thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from the group consisting of H, -C1-C6 alkyl-RA, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -PO(ORA)2, for each ring system in which Y appears, wherein each RA is independently selected from the group consisting of H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2, wherein said -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2 are optionally substituted with 1 to 3 subsitutents independently selected from R;
each Z is independently selected from the group consisting of H, and -C1-C8 alkyl and wherein said C1-C8 alkyl are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond;
T is selected from:
-C(A1)X1-T2-X1C(B1)-,
where T2 is:
wherein each X1 is independently a bond, wherein A1 and B1 are each independently =O,
wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1.)pentane or cubane, where said bicyclo(1.1.1.)pentane or cubane is optionally substituted with -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE or -N(R)C(O)ORE, and D is additionally optionally substituted by 1 to 2 R, and
wherein each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R.
P is:
F1-L1-T-L2-F2
wherein:
F1 and F2 are each independently selected from ring systems A, B, C and D:
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, or -C1-C5 alkyl, for each ring system in which W1 and W2 appear;
each X is independently selected from -OH, -O-acyl, azido, halo, cyanate, thiocyanate,
isocyanate, thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from a bond, H, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -P(O)(ORA)2 for each ring system in which Y appears, wherein each RA is independently selected from H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C1-C20 alkylN(R)2, -C1-C20 alkylene, -C1-C8 heteroalkylene, -C6-C14 arylene, aralkylene, -C1-C10 heterocyclo, -C3-C8 carbocyclo and -C1-C20 alkylN(R)-, and RF where said RA is optionally substituted with 1 to 3 subsituents independently selected from R, and wherein one Y is divalent and is bonded to L,
RF is -N(R6)QN(R5)C(O)- and is bonded to L at the carbonyl adjacent N(R5), wherein R5 and R6 are each independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, -aralkyl, -C1-C10 heterocyclyl and -C3-C8 carbocyclyl, or R5 or R6 joins with a substituted carbon on Q to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring, or R5 and R6 join together to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring system, and where Q is -C1-C8 alkylene-, -C1-C8 heteroalkylene-, -C6-C14 arylene-, -aralkylene-, -C1-C10 heterocyclo- or -C3-C8 carbocyclo-, wherein Q, R5 and R6 are each independently optionally substituted with 1 to 3 subsituents independently selected from R;
each Z is independently selected from the group consisting of H, and -C1-C8 alkyl and wherein said C1-C8 alkyl are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond;
T is selected from:
-C(A1)X1-T2-X1C(B1)-,
where T2 is:
wherein each X1 is independently a bond, wherein A1 and B1 are each independently =O, wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1.)pentane or cubane, where said bicyclo(1.1.1.)pentane or cubane is optionally substituted with -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE or -N(R)C(O)ORE, and D is additionally optionally substituted by 1 to 2 R; and
wherein each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R;
L is LA-LB-(LC)1-3, wherein LA is selected from the group consisting of -halo, -N(R)2, -CON(R)2, -S-aryl optionally substituted with -NO2 or -CON(R)2, -S-heteroaryl optionally substituted with -NO2, alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3 wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20,
wherein LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20,
LB3 is -PABA-, -PABC- or absent;
LC is absent or independently selected from the group consisting of -C1-C6alkylene-, -NRC3-C8-heterocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylene-, -S-, -NR-, -NRNR-, -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylenephenyleneNR-, -NRC1-C6alkylenephenyleneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
and
XA is CR or N ,
XB is CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) or N,
each XC is R,
each XD is -(CH2)1-5-, or is absent;
XE is O, S, C(R)2, C(R)(C(R)2)1-3-NR2 or NR and
each XF is (C(R)2)1-3-NR or C(R)2-(C(R)2)1-3-O.
AB is an antibody;
P is:
F1-L1-T-L2-F2
wherein:
F1 and F2 are each independently selected from ring systems A, B, C and D:
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, or -C1-C5 alkyl for each ring system in which W1 and W2 appear;
each X is independently selected from -OH, -O-acyl, azido, halo, cyanate, thiocyanate,
isocyanate, thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from a bond, H, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -P(O)(ORA)2 for each ring system in which Y appears, wherein each RA is independently selected from H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C1-C20 alkylN(R)2, -C1-C20 alkylene, -C1-C8 heteroalkylene, -C6-C14 arylene, aralkylene, -C1-C10 heterocyclo, -C3-C8 carbocyclo and -C1-C20 alkylN(R)-, and RF where said RA is optionally substituted with 1 to 3 subsituents independently selected from R, and wherein one Y is divalent and is bonded to L,
RF is -N(R6)QN(R5)C(O)- and is bonded to L at the carbonyl adjacent N(R5), wherein R5 and
R6 are each independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, -aralkyl, -C1-C10 heterocyclyl and -C3-C8 carbocyclyl, or R5 or R6 joins with a substituted carbon on Q to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring, or R5 and R6 join together to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring system, and where Q is -C1-C8 alkylene-, -C1-C8 heteroalkylene-, -C6-C14 arylene-, -aralkylene-, -C1-C10 heterocyclo- or -C3-C8 carbocyclo-, wherein Q, R5 and R6 are each independently optionally substituted with 1 to 3 subsituents independently selected from R;
each Z is independently selected from the group consisting of H, and -C1-C8 alkyl are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond;
T is selected from:
-C(A1)X1-T2-X1C(B1)-,
where T2 is:
wherein each X1 is independently a bond, wherein A1 and B1 are each independently =O, wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1.)pentane or cubane, where said bicyclo(1.1.1.)pentane or cubane is optionally substituted with -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE or -N(R)C(O)ORE, and D is additionally optionally substituted by 1 to 2 R; and
wherein each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R;
L is LA-LB-(LC)1-3;
LA is selected from: a bond to AB, -NR-(bond to AB), alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3
wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)- , -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20;
LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20,
LB3 is -PABA-, -PABC- or is absent,
LC is absent or is independently selected from the group consisting of -C1-C6alkylene-, -NRC3-C8-heterocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylene-, -S-, -NR-, -NRNR- , -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylenephenyleneNR-, -NRC1-C6alkylenephenyleneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
and
XA is CR or N,
XB is CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) or N,
each XC is R;
each XD is -(CH2)1-5-, or is absent;
XE is O, S, C(R)2, C(R)(C(R)2)1-3-NR2 or NR, and
each XF is (C(R)2)1-3-NR or C(R)2-(C(R)2)1-3-O.
F1 and F2 are each independently selected from ring systems A, B, C and D:
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, or -C1-C5 alkyl, for each ring system in which W1 and W2 appear;
each X is independently -OH, -O-acyl, azido, halo, cyanate, thiocyanate, isocyanate,
thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from the group consisting of H, -C1-C6 alkyl-RA -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -PO(ORA)2, for each ring system in which Y appears, wherein each RA is independently selected from the group consisting of H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2, wherein said -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2 are optionally substituted with 1 to 3 subsitutents independently selected from R;
each Z is independently selected from the group consisting of H, and -C1-C8 alkyl and wherein said C1-C8 alkyl, are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond;
T is selected from:
-C(A1)X1-T2-X1C(B1)-,
where T2 is:
wherein each X1 is independently a bond, wherein A1 and B1 are each independently =O wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1.)pentane or cubane, where said bicyclo(1.1.1.)pentane or cubane is substituted with one member of the group selected from N(RE)C(O)- where the carbonyl is bonded to L, and -C(O)- where the carbonyl is bonded to L, and additionally optionally substituted by 1 to 2 R;
where each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R;
L is LA-LB-(LC)1-3;
LA is selected from -halo, -N(R)2, -CON(R)2, -S-aryl optionally substituted with -NO2 or -CONR2, -S-heteroaryl optionally substituted with -NO2, alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3
wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)- , -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20;
LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20,
LB3 is -PABA-, -PABC- or is absent;
LC is absent or is independently selected from the group consisting of -C1-C6alkylene-, -NRC3-C8-heterocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylene-, -S-, -NR-, -NRNR- , -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylenephenyleneNR-, -NRC1-C6alkylenephenyleneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
and
XA is CR or N,
XB is CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) or N;
each XC is R;
each XD is -(CH2)1-5-, or is absent;
XE is O, S, C(R)2, C(R)(C(R)2)1-3-NR2 or NR, and
each XF is (C(R)2)1-3-NR or C(R)2-(C(R)2)1-3-O.
AB is an antibody;
F1 and F2 are each independently selected from ring systems A, B, C and D:
each R is independently selected from the group consisting of H, -C1-C20 alkyl, -C2-C6 alkenyl, -C2-C6 alkynyl, halo, hydroxyl, alkoxy, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -NO2, -C6-C14 aryl and -C6-C14 heteroaryl, wherein two or more R optionally join to form a ring or rings, and wherein said -C6-C14 aryl and -C6-C14 heteroaryl are optionally substituted with 1 to 5 substituents independently selected from -C1-C10 alkyl, -C1-C10 alkoxy, -halo, -C1-C10 alkylthio, -trifluoromethyl, -NH2, -NH(C1-C8 alkyl), -N(C1-C8 alkyl)2, -C1-C10 alkyl-N(C1-C8 alkyl)2, -C1-C3 alkylthio, -NO2 or -C1-C10 heterocyclyl, for each ring system in which R appears;
each V1 is independently a bond, O, N(R) or S, for each ring system in which V1 appears;
each V2 is independently O, N(R) or S, for each ring system in which V2 appears;
W1 and W2 are each independently H, or -C1-C5 alkyl, for each ring system in which W1 and W2 appear;
each X is independently -OH, -O-acyl, azido, halo, cyanate, thiocyanate, isocyanate,
thioisocyanate, or
for each ring system in which X appears;
each Y is independently selected from the group consisting of H, -C1-C6 alkyl-RA -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -PO(ORA)2, for each ring system in which Y appears, wherein each RA is independently selected from the group consisting of H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2, wherein said -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2 are optionally substituted with 1 to 3 subsitutents independently selected from R;
each Z is independently selected from the group consisting of H, and -C1-C8 alkyl and wherein said C1-C8 alkyl are each optionally substituted with 1 to 3 subsitutents independently selected from R, for each ring system in which Z appears;
L1 and L2 are each independently a direct bond;
T is selected from:
-C(A1)X1-T2-X1C(B1)-,
where T2 is:
wherein each X1 is independently a bond, wherein A1 and B1 are each independently =O wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1.)pentane or cubane, where said bicyclo(1.1.1.)pentane or cubane is substituted with one member of the group selected from N(RE)C(O)- where the carbonyl is bonded to L, and -C(O)- where the carbonyl is bonded to L, and additionally optionally substituted by 1 to 2 R;
where each RE is independently selected from the group consisting of H, -C1-C8 alkyl, -C1-C8 heteroalkyl, -aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, and wherein each RE is optionally substituted with 1 to 3 subsitutents independently selected from R;
L is LA-LB-(LC)1-3;
LA is selected from: a bond to AB, -NR-(bond to AB), alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3
wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)- , -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-, -N=CR-phenyl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20;
LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20,
LB3 is -PABA-, -PABC- or is absent;
LC is absent or is independently selected from the group consisting of -C1-C6alkylene-, -NRC3-C8-heterocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylene-, -S-, -NR-, -NRNR- , -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylenephenyleneNR-, -NRC1-C6alkylenephenyleneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
and
XA is CR or N,
XB is CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) or N;
each XC is R;
each XD is -(CH2)1-5-, or is absent;
XE is O, S, C(R)2, C(R)(C(R)2)1-3-NR2 or NR, and
each XF is (C(R)2)1-3-NR or C(R)2-(C(R)2)1-3-O.
each R is independently selected from the group consisting of H, -C1-C20 alkyl and -NH2;
each V1 is independently O or N(R) for each ring system in which V1appears;
each V2 is independently O or N(R) for each ring system in which V2 appears;
W1 and W2 are each independently H, or -C1-C5 alkyl, for each ring system in which W1 and W2 appear;
each X is independently halo, for each ring system in which X appears;
each Y is independently selected from the group consisting of H, -C(O)RA, -C(O)N(RA)2, glycosyl, -NO2 and -PO(ORA)2, for each ring system in which Y appears, wherein each RA is independently selected from the group consisting of H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2, wherein said -C1-C20 alkyl, -C1-C8 heteroalkyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2 are optionally substituted with 1 to 3 subsitutents independently selected from R;
L1 and L2 are each independently a direct bond; and
T is selected from:
-C(A1)X1-T2-X1C(B1)-,
where T2 is:
wherein each X1 is a bond, wherein A1 and B1 are each independently =O, wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1.)pentane or cubane,
where said bicyclo(1.1.1.)pentane or cubane is optionally substituted with -NH2, -N(R)C(O)H or -N(R)C(O)OH.
each R is independently selected from the group consisting of H, -C1-C20 alkyl and -NH2;
each V1 is independently O or N(R) for each ring system in which V1 appears;
each V2 is independently O or N(R) for each ring system in which V2 appears;
W1 and W2 are each independently H, or -C1-C5 alkyl for each ring system in which W1 and W2 appear;
each X is independently halo, for each ring system in which X appears;
each Y is independently selected from a bond, H, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyl, -NO2 and -P(O)(ORA)2 for each ring system in which Y appears, wherein each RA is independently selected from H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C1-C20 alkylN(R)2, -C1-C20 alkylene, -C1-C8 heteroalkylene, -C6-C14 arylene, aralkylene, -C1-C10 heterocyclo, -C3-C8 carbocyclo and -C1-C20 alkylN(R)-, and RF where said RA is optionally substituted with 1 to 3 subsituents independently selected from R, and wherein one Y is divalent and is bonded to L,
RF is -N(R6)QN(R5)C(O)- and is bonded to L at the carbonyl adjacent N(R5), wherein R5 and R6 are each independently selected from the group consisting of H, -C1-C8 alkyl, and -C1-C8 heteroalkyl, or R5 or R6 joins with a substituted carbon on Q to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring, or R5 and R6 join together to form a -C1-C10 heterocyclic or -C6-C14 heteroaryl ring system, and where Q is -C1-C8 alkylene-, -C6-C14 arylene-, or -C3-C8 carbocyclo-, wherein Q, R5 and R6 are each independently optionally substituted with 1 to 3 subsituents independently selected from R;
L1 and L2 are each independently selected from a direct bond; and
T is selected from:
-C(A1)X1-T2-X1C(B1)-,
where T2 is:
wherein each X1 is a bond, wherein A1 and B1 are each independently =O, wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1.)pentane or cubane, where said bicyclo(1.1.1.)pentane or cubane is optionally substituted with -NH2, -N(R)C(O)H or -N(R)C(O)OH.
each R is independently selected from the group consisting of H, -C1-C20 alkyl and -NH2;
each V1 is independently O or N(R) for each ring system in which V1 appears;
each V2 is independently O or N(R) for each ring system in which V2 appears;
W1 and W2 are each independently H, or -C1-C5 alkyl, for each ring system in which W1 and W2 appear;
each X is independently halo, for each ring system in which X appears;
each Y is independently selected from the group consisting of H, -C(O)RA, -C(O)N(RA)2, glycosyl, -NO2 and -PO(ORA)2, for each ring system in which Y appears, wherein each RA is independently selected from the group consisting of H, -C1-C20 alkyl, -C1-C8 heteroalkyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2, wherein said -C1-C20 alkyl, -C1-C8 heteroalkyl, -C3-C8 carbocyclyl and -C1-C20 alkylN(R)2 are optionally substituted with 1 to 3 subsitutents independently selected from R;
L1 and L2 are each independently a direct bond; and
T is -C(A1)X1-T2-X1C(B1)-, where T2 is:
wherein each X1 is a bond, wherein A1 and B1 are each independently =O, wherein g and j are each independently 0 and m is 1, and wherein D is bicyclo(1.1.1.)pentane or cubane, where said bicyclo(1.1.1.)pentane or cubane is optionally substituted with -NH2, -N(R)C(O)H or -N(R)C(O)OH.
LA is selected from the group consisting of -halo, -N(R)2, -CON(R)2, -S-aryl optionally substituted with -NO2 or-CON(R)2, -S-heteroaryl optionally substituted with -NO2, alkyl-SO2-heteroaryl, arylSO2-heteroaryl-, and
LB is LB1-LB2-LB3 wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20, wherein LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or-(CR15)o-S-S-(CR15)p where ο and p are each independently an integer from 1 to 20, and LB3 is -PABA-, -PABC- or absent; and
Lc is absent.
LA is selected from: a bond to AB, -NR-(bond to AB), alkyl-SO2-heteroaryl, arylSO2-heteroaryl-,
LB is LB1-LB2-LB3 wherein LB1 is absent or is one or more components selected from the group consisting of -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6alkyl-, -C(O)NRC1-C6alkyl-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyl-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6alkyl-, -S- , -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyl- and (-CH2-CH2-O-)1-20, wherein LB2 is AA0-12, wherein AA is a natural amino acid, a non-natural amino acid or -(CR15)o-S-S-(CR15)p where o and p are each independently an integer from 1 to 20, and LB3 is -PABA-, -PABC- or absent; and
Lc is absent.
wherein q is 1-10, and each b is independently CRD, N, NRD, O or S; and
wherein each RD is independently selected from the group consisting of H, -C1-C8 alkyl, -C(O)-C1-C8 alkyl, -C1-C8 heteroalkyl, -C6-C14 aryl, -aralkyl, -C1-C10 heterocyclyl, -C3-C8 carbocyclyl, -C(O)OC1-C8 alkyl, -C(O)N(C1-C8 alkyl)2, and -C(O)-halo, optionally substituted with RE.
F1 und F2 jeweils unabhängig ausgewählt sind aus Ringsystemen A, B, C und D:
jedes R unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C2-C6-Alkenyl, -C2-C6-Alkinyl, Halogen, Hydroxyl, Alkoxy, -NH2, -NH(C1-C8-Alkyl), -N(C1-C8-Alkyl)2, -NO2, -C6-C14-Aryl und -C6-C14-Heteroaryl, wobei zwei oder mehrere R gegebenenfalls verbunden sind, um einen Ring oder Ringe zu bilden, und wobei das -C6-C14-Aryl und -C6-C14-Heteroaryl gegebenenfalls substituiert sind mit 1 bis 5 Substituenten unabhängig ausgewählt aus -C1-C10-Alkyl, -C1-C10-Alkoxy, -Halogen, -C1-C10-Alkylthio, -Trifluormethyl, -NH2, -NH(-C1-C8-Alkyl), -N(C1-C8-Alkyl)2, -C1-C10-Alkyl-N(C1-C8-alkyl)2, -C1-C3-Alkylthio, -NO2 oder -C1-C10-Heterocyclyl, für jedes Ringsystem, in dem R enthalten ist;
jedes V1 unabhängig eine Bindung, 0, N(R) oder S ist, für jedes Ringsystem, in dem V1 enthalten ist;
jedes V2 unabhängig 0, N(R) oder S ist, für jedes Ringsystem, in dem V2 enthalten ist;
W1 und W2 jeweils unabhängig H oder -C1-C5-Alkyl sind, für jedes Ringsystem, in dem W1 und W2 enthalten sind;
jedes X unabhängig -OH, -O-Acyl, Azido, Halogen, Cyanat,
Thiocyanat, Isocyanat, Thioisocyanat oder
ist, für jedes Ringsystem, in dem X enthalten ist;
jedes Y unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C6-Alkyl-RA, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, Glycosyl, -NO2 und -PO(ORA)2, für jedes Ringsystem, in dem Y enthalten ist, wobei jedes RA unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl und -C1-C20-Alkyl-N(R)2, wobei das -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl und -C1-C20-Alkyl-N(R)2 gegebenenfalls subsituiert sind mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
jedes Z unabhängig ausgewählt ist aus der Gruppe, bestehend aus H und -C1-C8-Alkyl, und wobei das C1-C8-Alkyl jeweils gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R, für jedes Ringsystem, in dem Z enthalten ist;
L1 und L2 jeweils unabhängig eine direkte Bindung sind;
T ausgewählt ist aus:
-C(A1)X1-T2-X1C(B1)-,
wobei T2
wobei jedes X1 jeweils eine Bindung ist, wobei A1 und B1 jeweils unabhängig =0 sind,
wobei g und j jeweils unabhängig 0 sind und m 1 ist, und wobei D Bicyclo(1.1.1.)pentan oder Cuban ist, wobei das Bicyclo(1.1.1.)pentan oder Cuban gegebenenfalls substituiert ist mit -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE oder -N(R)C(O)ORE, und D zusätzlich gegebenenfalls substituiert ist mit 1 bis 2 R, und
wobei jedes RE unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C8-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, -Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl, -C(O)OC1-C8-Alkyl, -C(O)N(C1-C8-Alkyl)2 und -C(0)-Halogen, und wobei jedes RE gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R.
F1 und F2 jeweils unabhängig ausgewählt sind aus Ringsystemen A, B, C und D:
jedes R unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C2-C6-Alkenyl, -C2-C6-Alkinyl, Halogen, Hydroxyl, Alkoxy, -NH2, -NH(C1-C8-Alkyl) , -N(C1-C8-Alkyl)2, -NO2, -C6-C14-Aryl und -C6-C14-Heteroaryl, wobei zwei oder mehrere R gegebenenfalls verbunden sind, um einen Ring oder Ringe zu bilden, und wobei das -C6-C14-Aryl und -C6-C14-Heteroaryl gegebenenfalls substituiert sind mit 1 bis 5 Substituenten unabhängig ausgewählt aus -C1-C10-Alkyl, -C1-C10-Alkoxy, -Halogen, -C1-C10-Alkylthio, -Trifluormethyl, -NH2, -NH (-C1-C8-Alkyl), -N(C1-C8-Alkyl)2, -C1-C10-Alkyl-N(C1-C8-alkyl)2, -C1-C3-Alkylthio, -NO2 oder -C1-C10-Heterocyclyl, für jedes Ringsystem, in dem R enthalten ist;
jedes V1 unabhängig eine Bindung, 0, N(R) oder S ist, für jedes Ringsystem, in dem V1 enthalten ist;
jedes V2 unabhängig 0, N(R) oder S ist, für jedes Ringsystem, in dem V2 enthalten ist;
W1 und W2 jeweils unabhängig H oder -C1-C5-Alkyl sind, für jedes Ringsystem, in dem W1 und W2 enthalten sind;
jedes X unabhängig ausgewählt ist aus -OH, Azido, Halogen, Cyanat, Thiocyanat, Isocyanat,
Thioisocyanat oder
für jedes Ringsystem, in dem X enthalten ist;
jedes Y unabhängig ausgewählt ist aus einer Bindung, H, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(ON(RA)2, -C(S)N(RA)2, Glycosyl, -NO2 und -P(O)(ORA)2 für jedes Ringsystem, in dem Y enthalten ist, wobei jedes RA unabhängig ausgewählt aus H, -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl, -C1-C20-Alkyl-N(R)2, -C1-C20-Alkylen, -C1-C8-Heteroalkylen, -C6-C14-Arylen, Aralkylen, -C1-C10-Heterocyclo, -C3-C8-Carbocyclo und -C1-C20-Alkyl-N(R)- und RF, wobei das RA gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R, und wobei ein Y divalent ist und gebunden ist an L,
RF gleich -N(R6)QN(R5)C(O)- ist und gebunden ist an L an dem Carbonyl, benachbart zu N(R5), wobei R5 und R6 jeweils unabhängig ausgewählt sind aus der Gruppe, bestehend aus H, -C1-C8-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, -Aralkyl, -C1-C10-Heterocyclyl und -C3C8-Carbocyclyl, oder R5 oder R6 vereinen sich mit einem substituierten Kohlenstoff an Q, um einen -C1-C10-Heterocyclyl- oder -C6-C14-Heteroarylring zu bilden, oder R5 und R6 vereinen sich, um ein -C1-C10-Heterocyclyl- oder -C6-C14-Heteroarylringsystem zu bilden, und wobei Q gleich -C1-C8-Alkylen-, -C1-C8-Heteroalkylen-, -C6-C14-Arylen-, -Aralkylen-, -C1-C10-Heterocyclo- oder -C3-C8-Carbocyclo- ist, wobei Q, R5 und R6 jeweils unabhängig gegebenenfalls subsituiert sind mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
jedes Z unabhängig ausgewählt ist aus der Gruppe, bestehend aus H und -C1-C8-Alkyl, und wobei das C1-C8-Alkyl jeweils gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R, für jedes Ringsystem, in dem Z enthalten ist;
L1 und L2 jeweils unabhängig eine direkte Bindung sind;
T ausgewählt ist aus:
-C(A1)X1-T2-X1C(B1)-,
wobei T2
wobei jedes X1 jeweils eine Bindung ist, wobei A1 und B1 jeweils unabhängig =0 sind,
wobei g und j jeweils unabhängig 0 sind und m 1 ist, und wobei D Bicyclo(1.1.1.)pentan oder Cuban ist, wobei das Bicyclo(1.1.1.)pentan oder Cuban gegebenenfalls substituiert ist mit -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE oder -N(R)C(O)ORE, und D zusätzlich gegebenenfalls substituiert ist mit 1 bis 2 R, und
wobei jedes RE unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C8-Alkyl, -C1-C8-Heteroalkyl, -Aryl, -Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl, -C(O)OC1-C8-Alkyl, -C(O)N(C1-C8-Alkyl)2 und -C(O)-Halogen, und wobei jedes RE gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
L gleich LA-LB-(LC)1-3 ist, wobei LA ausgewählt ist aus der Gruppe, bestehend aus -Halogen, -N(R)2, -CON(R)2, -S-Aryl, gegebenenfalls substituiert mit -NO2 oder -CON(R)2, -S-Heteroaryl, gegebenenfalls substituiert mit -NO2, Alkyl-SO2-heteroaryl, Aryl-SO2-heteroaryl-,
LB gleich LB1-LB2-LB3 ist, wobei LB1 fehlt oder eine oder mehrere Komponenten ist, ausgewählt aus der Gruppe, bestehend aus -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6-Alkyl-, -C(O)NRC1-C6-Alkyl-, -C1-C6-Alkyl(OCH2CH2)1-6-, -C(O)C1-C6-Alkyl-NRC(O)-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-, -C1-C6-Alkyl(OCH2CH2)1-6-C(O)-, -C1-C6-Alkyl-S-S-C1-C6-alkylNRC(O)CH2-, -C1-C6-Alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6-Alkyl-NRC(O)C1-6-alkyl-, -N=CR-Phenyl-O-C1-C6-alkyl-, -N=CR-Phenyl-O-C1-C6-alkyl-C(O)-, -C(O)-C1-C6-Alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6-Alkyl-phenyl(NR-C(O)C1-C6alkyl)1-4-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyl-, -C1-C6-Alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6-Alkyl)-C1-C6-alkyl- und (-CH2-CH2-O-)1-20,
wobei LB2 AA0-12 ist, wobei AA eine natürliche Aminosäure, eine nicht-natürliche Aminosäure oder -(CR15)o-S-S-(CR15)p ist, wobei o und p jeweils unabhängig eine ganze Zahl von 1 bis 20 sind,
LB3 gleich -PABA-, -PABC- ist oder fehlt;
LC fehlt oder unabhängig ausgewählt ist aus der Gruppe, bestehend aus -C1-C6-Alkylen-, -NRC3-C8-HeterocyclylNR-, -NRC3-C8-CarbocyclylNR-, -NRC1-C6-AlkylNR-, -NRC1-C6-Alkylen-, -S-, -NR-, -NRNR-, -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-AlkylenphenylenNR-, -NRC1-C6-AlkylenphenylenSO2NR-, -OC1-C6-AlkylS-SC1-C6-alkylC(COOR)NR-, -NRC(COOR)C1-C6-AlkylS-SC1-C6alkylO-,
und
XA CR oder N ist,
XB gleich CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) oder N ist,
jedes XC R ist,
jedes XD gleich -(CH2)1-5- ist oder fehlt;
XE gleich O, S, C(R)2, C(R)(C(R)2)1-3-NR2 oder NR ist und
jedes XF gleich (C(R)2)1-3-NR oder C(R)2-(C(R)2)1-3-O ist.
AB ein Antikörper ist;
P
F1-L1-T-L2-F2
ist,
worin:
F1 und F2 jeweils unabhängig ausgewählt sind aus Ringsystemen A, B, C und D:
jedes R unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C2-C6-Alkenyl, -C2-C6-Alkinyl, Halogen, Hydroxyl, Alkoxy, -NH2, -NH(C1-C8-Alkyl), -N(C1-C8-Alkyl)2, -NO2, -C6-C14-Aryl und -C6-C14-Heteroaryl, wobei zwei oder mehrere R gegebenenfalls verbunden sind, um einen Ring oder Ringe zu bilden, und wobei das -C6-C14-Aryl und -C6-C14-Heteroaryl gegebenenfalls substituiert sind mit 1 bis 5 Substituenten, unabhängig ausgewählt aus -C1-C10-Alkyl, -C1-C10-Alkoxy, -Halogen, -C1-C10-Alkylthio, -Trifluormethyl, -NH2, -NH (-C1-C8-Alkyl) , -N(C1-C8-Alkyl)2, -C1-C10-Alkyl-N(C1-C8-alkyl)2, -C1-C3-Alkylthio, -NO2 oder -C1-C10-Heterocyclyl, für jedes Ringsystem, in dem R enthalten ist;
jedes V1 unabhängig eine Bindung, 0, N(R) oder S ist, für jedes Ringsystem, in dem V1 enthalten ist;
jedes V2 unabhängig 0, N(R) oder S ist, für jedes Ringsystem, in dem V2 enthalten ist;
W1 und W2 jeweils unabhängig H oder -C1-C5-Alkyl sind, für jedes Ringsystem, in dem W1 und W2 enthalten sind;
jedes X unabhängig ausgewählt ist aus -OH, Azido, Halogen, Cyanat, Thiocyanat, Isocyanat,
Thioisocyanat oder
für jedes Ringsystem, in dem X enthalten ist;
jedes Y unabhängig ausgewählt ist aus einer Bindung, H, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, Glycosyl, -NO2 und -P(O)(ORA)2 für jedes Ringsystem, in dem Y enthalten ist, wobei jedes RA unabhängig ausgewählt aus H, -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3C8-Carbocyclyl, -C1-C20-Alkyl-N(R)2, -C1-C20-Alkylen, -C1-C8-Heteroalkylen, -C6-C14-Arylen, Aralkylen, -C1-C10-Heterocyclo, -C3-C8-Carbocyclo und -C1-C20-Alkyl-N(R)- und RF, wobei das RA gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R, und wobei ein Y divalent ist und gebunden ist an L,
RF gleich -N(R6)QN(R5)C(O)- ist und gebunden ist an L an dem Carbonyl benachbart zu N(R5), wobei R5 und R6 jeweils unabhängig ausgewählt sind aus der Gruppe, bestehend aus H, -C1-C8-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, -Aralkyl, -C1-C10-Heterocyclyl und -C3-C8-Carbocyclyl, oder R5 oder R6 vereinen sich mit einem substituierten Kohlenstoff an Q, um einen -C1-C10-Heterocyclyl- oder -C6-C14-Heteroarylring zu bilden, oder R5 und R6 vereinen sich, um ein -C1-C10-Heterocyclyl- oder -C6-C14-Heteroarylringsystem zu bilden, und wobei Q gleich -C1-C8-Alkylen-, -C1-C8-Heteroalkylen-, -C6-C14-Arylen-, -Aralkylen-, -C1-C10-Heterocyclo- oder -C3-C8-Carbocyclo- ist, wobei Q, R5 und R6 jeweils unabhängig gegebenenfalls subsituiert sind mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
jedes Z unabhängig ausgewählt ist aus der Gruppe, bestehend aus H und -C1-C8-Alkyl, wobei jedes jeweils gegebenenfalls substituiert mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R, für jedes Ringsystem, in dem Z enthalten ist;
L1 und L2 jeweils unabhängig eine direkte Bindung sind;
T ausgewählt ist aus:
-C(A1)X1-T2-X1C(B1)-,
wobei T2
wobei jedes X1 jeweils eine Bindung ist, wobei A1 und B1 jeweils unabhängig =0 sind, wobei g und j jeweils unabhängig 0 sind und m 1 ist, und wobei D Bicyclo(1.1.1.)pentan oder Cuban ist, wobei das Bicyclo(1.1.1.)pentan oder Cuban gegebenenfalls substituiert ist mit -RE, -C(O)RE, -C(O)ORE, -N(RE)2, -N(R)C(O)RE oder -N(R)C(O)ORE, und D zusätzlich gegebenenfalls substituiert ist mit 1 bis 2 R, und
wobei jedes RE unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C8-Alkyl, -C1-C8-Heteroalkyl, -Aryl, -Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl, -C(O)OC1-C8-Alkyl, -C(O)N(C1-C8-Alkyl)2 und -C(O)-Halogen, und wobei jedes RE gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
L gleich LA-LB-(LC)1-3 ist;
LA ausgewählt ist aus: einer Bindung zu AB, -NR-(Bindung zu AB), Alkyl-SO2-heteroaryl, ArylSO2-heteroaryl-,
LB gleich LB1-LB2-LB3 ist
wobei LB1 fehlt oder eine oder mehrere Komponenten ist/sind ausgewählt aus der Gruppe, bestehend aus -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6-Alkyl-, -C(O)NRC1-C6-Alkyl-, -C1-C6-Alkyl(OCH2CH2)1-6-, -C(O)C1-C6-AlkylNRC(O)-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-, -C1-C6-Alkyl(OCH2CH2)1-6-C(O)-, -C1-C6-Alkyl-S-S-C1-C6-alkylNRC(O)CH2-, -C1-C6-Alkyl (OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6-Alkyl-NRC(O)C1-6-alkyl-, -N=CR-Phenyl-O-C1-C6-alkyl-, -N=CR-Phenyl-O-C1-C6-alkyl-C(O)-, -C(O)-C1-C6-Alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6-Alkyl-phenyl(NR-C(O)C1-C6-alkyl)1-4-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-NRC(O)C1-C6-alkyl-, -C1-C6-Alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6-Alkyl)-C1-C6-alkyl- und (-CH2-CH2-O-)1-20;
LB2 gleich AA0-12 ist, wobei AA eine natürliche Aminosäure, eine nicht-natürliche Aminosäure oder -(CR15)o-S-S-(CR15)p ist, wobei o und p jeweils unabhängig eine ganze Zahl von 1 bis 20 sind,
LB3 gleich -PABA-, -PABC- ist oder fehlt,
LC fehlt oder unabhängig ausgewählt ist aus der Gruppe, bestehend aus -C1-C6-Alkylen-, -NRC3-C8-HeterocyclylNR-, -NRC3-C8-CarbocyclylNR-, -NRC1-C6-AlkylNR-, -NRC1-C6-Alkylen-, -S-, -NR-, -NRNR- , -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-AlkylenphenylenNR-, -NRC1-C6-AlkylenphenylenSO2NR-, -OC1-C6-AlkylS-SC1-C6-alkylC(COOR)NR-, -NRC (COOR)C1-C6-AlkylS-SC1-C6-alkylO-,
und
XA gleich CR oder N ist,
XB gleich CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) oder N ist,
jedes XC gleich R ist;
jedes XD gleich -(CH2)1-5- ist oder fehlt;
XE gleich O, S, C(R)2, C(R)(C(R)2)1-3-NR2 oder NR ist, und
jedes XF gleich (C(R)2)1-3-NR oder C(R)2-(C(R)2)1-3-O ist.
F1 und F2 jeweils unabhängig ausgewählt sind aus Ringsystemen A, B, C und D:
jedes R unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C2-C6-Alkenyl, -C2-C6-Alkinyl, Halogen, Hydroxyl, Alkoxy, -NH2, -NH(C1-C8-Alkyl), -N(C1-C8-Alkyl)2, -NO2, -C6-C14-Aryl und -C6-C14-Heteroaryl, wobei zwei oder mehrere R gegebenenfalls verbunden sind, um einen Ring oder Ringe zu bilden, und wobei das -C6-C14-Aryl und -C6-C14-Heteroaryl gegebenenfalls substituiert sind mit 1 bis 5 Substituenten, unabhängig ausgewählt aus -C1-C10-Alkyl, -C1-C10-Alkoxy, -Halogen, -C1-C10-Alkylthio, -Trifluormethyl, -NH2, -NH(-C1-C8-Alkyl), -N(C1-C8-Alkyl)2, -C1-C10-Alkyl-N(C1-C8-Alkyl)2, -C1-C3-Alkylthio, -NO2 oder -C1-C10-Heterocyclyl, für jedes Ringsystem, in dem R enthalten ist;
jedes V1 unabhängig eine Bindung, O, N(R) oder S ist, für jedes Ringsystem, in dem V1 enthalten ist;
jedes V2 unabhängig O, N(R) oder S ist, für jedes Ringsystem, in dem V2 enthalten ist;
W1 und W2 jeweils unabhängig H oder -C1-C5-Alkyl sind, für jedes Ringsystem, in dem W1 und W2 enthalten sind;
jedes X unabhängig -OH, -O-Acyl, Azido, Halogen, Cyanat, Thiocyanat, Isocyanat, Thioisocyanat
oder
ist, für jedes Ringsystem, in dem X enthalten ist;
jedes Y unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C6-Alkyl-RA, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, Glycosyl, -NO2 und -PO(ORA)2, für jedes Ringsystem, in dem Y enthalten ist, wobei jedes RA unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl und -C1-C2-Alkyl-N(R)2, wobei das -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl und -C1-C20-Alkyl-N(R)2 gegebenenfalls subsituiert sind mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
jedes Z unabhängig ausgewählt ist aus der Gruppe, bestehend aus H und -C1-C8-Alkyl, und wobei das C1-C8-Alkyl jeweils gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R, für jedes Ringsystem, in dem Z enthalten ist;
L1 und L2 jeweils unabhängig eine direkte Bindung sind;
T ausgewählt ist aus:
-C(A1)X1-T2-X1C(B1)-,
wobei T2
wobei jedes X1 jeweils eine Bindung ist, wobei A1 und B1 jeweils unabhängig =O sind,
wobei g und j jeweils unabhängig 0 sind m gleich 1 ist, und wobei D Bicyclo(1.1.1.)pentan oder Cuban, wobei das Bicyclo(1.1.1.)pentan oder Cuban substituiert ist mit einem Mitglied der Gruppe, ausgewählt aus N(RE)C(O)-, wobei das Carbonyl gebunden ist an L, und -C(O)-, wobei das Carbonyl gebunden ist an L, und zusätzlich gegebenenfalls weiter substituiert ist mit 1 bis 2 R;
wobei jedes RE unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C8-Alkyl, -C1-C8-Heteroalkyl, -Aryl, -Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl, -C(O)OC1-C8-Alkyl, -C(O)N(C1-C8-Alkyl)2 und -C(O)-Halogen, und wobei jedes RE gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
L gleich LA-LB-(LC)1-3 ist;
LA ausgewählt ist aus -Halogen, -N(R)2, -CON(R)2, -S-Aryl, gegebenenfalls substituiert mit -NO2 oder -CONR2, -S-Heteroaryl, gegebenenfalls substituiert mit -NO2, Alkyl-SO2-heteroaryl, ArylSO2-heteroaryl-,
LB gleich LB1-LB2-LB3 ist,
wobei LB1 fehlt oder eine oder mehrere Komponenten ist, ausgewählt aus der Gruppe, bestehend aus -C(0)-, -C(S)-, -C(O)NR-, -C(O)C1-C6-Alkyl-, -C(O)NRC1-C6-Alkyl-, -C1-C6-Alkyl(OCH2CH2)1-6-, -C(O)C1-C6-AlkylNRC(O)-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-, -C1-C6-Alkyl(OCH2CH2)1-6-C(O)-, -C1-C6-Alkyl-S-S-C1-C6-alkylNRC(O)CH2-, -C1-C6-Alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6-Alkyl-NRC(O)C1-6-alkyl-, -N=CR-Phenyl-O-C1-C6-alkyl-, -N=CR-Phenyl-O-C1-C6-alkyl-C(O)-, -C(O)-C1-C6-Alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6-Alkyl-phenyl(NR-C(O)C1-C6-alkyl)1-4-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-NRC(O)C1-C6-alkyl-, -C1-C6-Alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6-Alkyl)-C1-C6-alkyl- und (-CH2-CH2-O-)1-20;
LB2 gleich AA0-12 ist, wobei AA eine natürliche Aminosäure, eine nicht-natürliche Aminosäure oder -(CR15)o-S-S-(CR15)p ist, wobei o und p jeweils unabhängig eine ganze Zahl von 1 bis 20 sind,
LB3 gleich -PABA-, -PABC- ist oder fehlt;
LC fehlt oder unabhängig ausgewählt ist aus der Gruppe, bestehend aus -C1-C6-Alkylen-, -NRC3-C8-HeterocyclylNR-, -NRC3-C8-CarbocyclylNR-, -NRC1-C6-AlkylNR-, -NRC1-C6-Alkylen-, -S-, -NR-, -NRNR- , -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-AlkylenphenylenNR-, -NRC1-C6-AlkylenphenylenSO2NR-, -OC1-C6-AlkylS-SC1-C6-alkylC(COOR)NR-, -NRC(COOR)C1-C6-AlkylS-SC1-C6-alkylO-,
und
worin
XA gleich CR oder N ist,
XB gleich CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) oder N ist;
jedes XC gleich R ist;
jedes XD gleich -(CH2)1-5- ist oder fehlt;
XE gleich O, S, C(R)2, C(R)(C(R)2)1-3NR2 oder NR ist, und
jedes XF gleich (C(R)2)1-3-NR oder C(R)2-(C(R)2)1-3-O ist.
AB ein Antikörper ist;
F1 und F2 jeweils unabhängig ausgewählt sind aus Ringsystemen A, B, C und D:
jedes R unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C2-C6-Alkenyl, -C2-C6-Alkinyl, Halogen, Hydroxyl, Alkoxy, -NH2, -NH(C1-C8-Alkyl), -N(C1-C8-Alkyl)2, -NO2, -C6-C14-Aryl und -C6-C14-Heteroaryl, wobei zwei oder mehrere R gegebenenfalls verbunden sind, um einen Ring oder Ringe zu bilden, und wobei das -C6-C14-Aryl und -C6-C14-Heteroaryl gegebenenfalls substituiert sind mit 1 bis 5 Substituenten, unabhängig ausgewählt aus -C1-C10-Alkyl, -C1-C10-Alkoxy, -Halogen, -C1-C10-Alkylthio, -Trifluormethyl, -NH2, -NH (-C1-C8-Alkyl), -N(C1-C8-Alkyl)2, -C1-C10-Alkyl-N(C1-C8-alkyl)2, -C1-C3-Alkylthio, -NO2 oder -C1-C10-Heterocyclyl, für jedes Ringsystem, in dem R enthalten ist;
jedes V1 unabhängig eine Bindung, O, N(R) oder S ist, für jedes Ringsystem, in dem V1 enthalten ist;
jedes V2 unabhängig O, N(R) oder S ist, für jedes Ringsystem, in dem V2 enthalten ist;
W1 und W2 jeweils unabhängig H oder -C1-C5-Alkyl sind, für jedes Ringsystem, in dem W1 und W2 enthalten sind;
jedes X unabhängig -OH, -O-Acyl, Azido, Halogen, Cyanat, Thiocyanat, Isocyanat, Thioisocyanat
oder
ist, für jedes Ringsystem, in dem X enthalten ist;
jedes Y unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C6-Alkyl-RA, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, Glycosyl, -NO2 und -PO(ORA)2, für jedes Ringsystem, in dem Y enthalten ist, wobei jedes RA unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl und -C1-C20-Alkyl-N(R)2, wobei das -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl und -C1-C20-Alkyl-N(R)2 gegebenenfalls subsituiert sind mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
jedes Z unabhängig ausgewählt ist aus der Gruppe, bestehend aus H und -C1-C8-Alkyl, und wobei das C1-C8-Alkyl jeweils gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R, für jedes Ringsystem, in dem Z enthalten ist;
L1 und L2 jeweils unabhängig eine direkte Bindung sind;
T ausgewählt ist aus:
-C(A1)X1-T2-X1C(B1)-,
wobei T2
wobei jedes X1 unabhängig eine Bindung ist, wobei A1 und B1 jeweils unabhängig =O sind,
wobei g und j jeweils unabhängig 0 sind m gleich 1 ist, und worin D gleich Bicyclo(1.1.1.)pentan oder Cuban ist, wobei das Bicyclo(1.1.1.)pentan oder Cuban substituiert ist mit einem Leitglied der Gruppe, ausgewählt aus N(RE)C(O)-, wobei das Carbonyl gebunden ist an L, und -C(O)-, wobei das Carbonyl gebunden ist an L, und des Weiteren gegebenenfalls substituiert ist mit 1 bis 2 R;
wobei jedes RE unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C8-Alkyl, -C1-C8-Heteroalkyl, -Aryl, -Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl, -C(O)OC1--C8-Alkyl, -C(O)N(C1-C8-Alkyl)2 und -C(O)-Halogen, und wobei jedes RE gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
L gleich LA-LB-(LC)1-3 ist;
LA ausgewählt ist aus: einer Bindung zu AB, -NR-(Bindung zu AB), Alkyl-SO2-heteroaryl, ArylSO2-heteroaryl-,
LB gleich LB1-LB2-LB3 ist, wobei LB1 fehlt oder eine oder mehrere Komponenten ist, ausgewählt aus der Gruppe, bestehend aus -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6-Alkyl-, -C(O)NRC1-C6-Alkyl-, -C1-C6-Alkyl (OCH2CH2)1-6-, -C(O)C1-C6-AlkylNRC(O)-, -C(O)C1-C6-Alkyl (OCH2CH2)1-6-, -C1-C6-Alkyl(OCH2CH2)1-6-C(O)-, -C1-C6-Alkyl-S-S-C1-C6-alkylNRC(O)CH2-, -C1-C6-Alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6-Alkyl-NRC(O)C1-6-alkyl-, -N=CR-Phenyl-O-C1-C6-alkyl-, -N=CR-Phenyl-O-C1-C6-alkyl-C(O)-, -C(O)-C1-C6-Alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6-Alkyl-phenyl(NR-C(O)C1-C6-alkyl)1-4-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-NRC(O)C1-C6-alkyl-, -C1- C6-Alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6-Alkyl)-C1-C6-alkyl- und (-CH2-CH2-O-)1-20;
LB2 gleich AA0-12 ist, wobei AA eine natürliche Aminosäure, eine nicht-natürliche Aminosäure oder -(CR15)o-S-S(CR15)p ist, wobei o und p jeweils unabhängig eine ganze Zahl von 1 bis 20 sind,
LB3 gleich -PABA-, -PABC- ist oder fehlt;
LC fehlt oder unabhängig ausgewählt ist aus der Gruppe, bestehend aus -C1-C6-Alkylen-, -NRC3-C8-HeterocyclylNR-, -NRC3-C8-CarbocyclylNR-, -NRC1-C6-AlkylNR-, -NRC1-C6-Alkylen-, -S-, -NR-, -NRNR- , -O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-AlkylenphenylenNR-, -NRC1-C6-AlkylenphenylenSO2NR-, -OC1-C6-AlkylS-SC1-C6-alkylC(COOR)NR-, -NRC(COOR)C1-C6-AlkylS-SC1-C6-alkylO-,
und
XA gleich CR oder N ist,
XB gleich CH, CR(C(R)2)1-3NR, CR(C(R)2)1-3O, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) oder N ist;
jedes XC gleich R ist;
jedes XD gleich -(CH2)1-5- ist oder fehlt;
XE gleich O, S, C(R)2, C(R)(C(R)2)1-3-NR2 oder NR ist, und jedes XF gleich (C(R)2)1-3-NR oder C(R)2-(C(R)2)1-3-O ist.
jedes R unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl und -NH2;
jedes V1 unabhängig O oder N(R) ist, für jedes Ringsystem, in dem V1 enthalten ist;
jedes V2 unabhängig O oder N(R) ist, für jedes Ringsystem, in dem V2 enthalten ist;
W1 und W2 unabhängig H oder -C1-C5-Alkyl sind, für jedes Ringsystem, in dem W1 und W2 enthalten sind;
jedes X unabhängig Halogen ist, für jedes Ringsystem, in dem X enthalten ist;
jedes Y unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C(O)RA, -C(O)N(RA)2, Glycosyl, -NO2 und -PO(ORA)2, für jedes Ringsystem, in dem Y enthalten ist, wobei jedes RA unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C3-C8-Carbocyclyl und -C1-C20-AlkylN(R)2, wobei das -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C3-C8-Carbocyclyl und -C1-C20-AlkylN(R)2 gegebenenfalls substituiert sind mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
L1 und L2 jeweils unabhängig eine direkte Bindung sind; und
T ausgewählt ist aus:
-C(A1)X1-T2-X1C(B1)-,
worin T2 gleich
ist, worin jedes X1 eine Bindung ist, worin A1 und B1 jeweils unabhängig =O sind, worin g und j jeweils unabhängig 0 sind und m gleich
1 ist, und worin D Bicyclo(1.1.1.)pentan oder Cuban ist, wobei das Bicyclo(1.1.1.)pentan
oder Cuban gegebenenfalls substituiert ist mit -NH2, -N(R)C(O)H oder -N(R)C(O)OH.
jedes R unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl und -NH2;
jedes V1 unabhängig O oder N(R) ist, für jedes Ringsystem, in dem V1 enthalten ist;
jedes V2 unabhängig O oder N(R) ist, für jedes Ringsystem, in dem V2 enthalten ist;
W1 und W2 jeweils unabhängig H oder -C1-C5-Alkyl sind, für jedes Ringsystem, in dem W1 und W2 enthalten sind;
jedes X unabhängig Halogen ist, für jedes Ringsystem, in dem X enthalten ist;
jedes Y unabhängig ausgewählt ist aus einer Bindung, H, -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA, -C(O)N(RA )2, -C(S)N(RA)2, Glycosyl, -NO2 und -P(O)(ORA)2 für jedes Ringsystem, in dem Y enthalten ist, wobei jedes RA unabhängig ausgewählt ist aus H, -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl, -C1-C20-AlkylN(R)2, -C1-C20-Alkylen, -C1-C8-Heteroalkylen, -C6-C14-Arylen, Aralkylen, -C1-C10-Heterocyclo, -C3-C8-Carbocyclo und -C1-C20-AlkylN(R)- und RF, wobei das RA gegebenenfalls substituiert ist mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R, und wobei ein Y divalent ist und gebunden ist an L,
RF gleich -N(R6)QN(R5)C(O)- ist und gebunden ist an L an dem Carbonyl benachbart zu N(R5), wobei R5 und R6 jeweils unabhängig ausgewählt sind aus der Gruppe, bestehend aus H, -C1-C8-Alkyl und C1-C8-Heteroalkyl, oder R5 oder R6 verbinden sich mit einem substituierten Kohlenstoff an Q, um einen -C1-C10-Heterocyclyl- oder -C6-C14-Heteroarylring zu bilden, oder R5 und R6 verbinden sich, um ein -C1-C10-Heterocyclyl- oder -C6-C14-Heteroarylringsystem zu bilden, und wobei Q gleich -C1-C8-Alkylen-, -C6-C14-Arylen- oder -C3-C8-Carbocyclo- ist, wobei Q, R5 und R6 jeweils unabhängig gegebenenfalls substituiert sind mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
L1 und L2 unabhängig ausgewählt sind aus einer direkten Bindung; und
T ausgewählt ist aus:
-C(A1)X1-T2-X1C(B1)-,
worin T2 gleich
ist,
worin jedes X1 eine Bindung ist, worin A1 und B1 jeweils unabhängig =O sind, worin g und j jeweils unabhängig 0 sind und m gleich 1 ist, und worin D Bicyclo(1.1.1.)pentan oder Cuban ist, wobei das Bicyclo(1.1.1.)pentan oder Cuban gegebenenfalls substituiert ist mit -NH2, -N(R)C(O)H oder -N(R)C(O)OH.
jedes R unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl und -NH2;
jedes V1 unabhängig O oder N(R) ist, für jedes Ringsystem, in dem V1 enthalten ist;
jedes V2 unabhängig O oder N(R) ist, für jedes Ringsystem, in dem V2 enthalten ist;
W1 und W2 jeweils unabhängig H oder -C1-C5-Alkyl sind, für jedes Ringsystem, in dem W1 und W2 enthalten sind;
jedes X unabhängig Halogen ist, für jedes Ringsystem, in dem X enthalten ist;
jedes Y unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C(O)RA, -C(O)N(RA)2, Glycosyl, -NO2 und -PO(ORA)2, für jedes Ringsystem, in dem Y enthalten ist, wobei jedes RA unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C3-C8-Carbocyclyl und -C1-C20-AlkylN(R)2, wobei das -C1-C20-Alkyl, -C1-C8-Heteroalkyl, -C3-C8-Carbocyclyl und -C1-C20-AlkylN(R)2 gegebenenfalls substituiert sind mit 1 bis 3 Substituenten, unabhängig ausgewählt aus R;
L1 und L2 jeweils unabhängig eine direkte Bindung sind; und
T gleich -C(A1)X1-T2-X1C(B1)- ist, worin T2 gleich
ist,
worin jedes X1 eine Bindung ist, worin A1 und B1 jeweils unabhängig =O sind, worin g und j jeweils unabhängig 0 sind und m gleich 1 ist, und worin D Bicyclo(1.1.1.)pentan oder Cuban ist, wobei das Bicyclo(1.1.1.)pentan oder Cuban gegebenenfalls substituiert ist mit -NH2, -N(R)C(O)H oder -N(R)C(O)OH.
LA ausgewählt ist aus der Gruppe, bestehend aus -Halogen, -N(R)2, -CON(R)2, -S-Aryl, gegebenenfalls substituiert mit -NO2 oder -CON(R)2, -S-Heteroaryl, gegebenenfalls substituiert mit -NO2, Alkyl-SO2-heteroaryl, ArylSO2-heteroaryl-, und
LB gleich LB1-LB2-LB3 ist, worin LB1 fehlt oder eine oder mehrere Komponenten ist, ausgewählt aus der Gruppe, bestehend aus -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6-Alkyl-, -C(O)NRC1-C6-Alkyl-, -C1-C6-Alkyl(OCH2CH2)1-6-, -C(O)C1-C6-AlkylNRC(O)-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-, -C1-C6-Alkyl(OCH2CH2)1-6-C(O)-, -C1-C6-Alkyl-S-S-C1-C6-alkylNRC(O)CH2-C1-C6-alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6-Alkyl-NRC(O)C1-6-alkyl-, -C(O)-C1-C6-Alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6-Alkyl-phenyl(NR-C(O)C1-C6-alkyl)1-4-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-NRC(O)C1-C6-alkyl-, -C1-C6-Alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6-Alkyl)-C1-C6-alkyl- und (-CH2-CH2-O-)1-20, worin LB2 gleich AA0-12 ist, wobei AA eine natürliche Aminosäure, eine nicht-natürliche Aminosäure oder -(CR15)o-S-S-(CR15)p ist, wobei o und p jeweils unabhängig eine ganze Zahl von 1 bis 20 sind, und LB3 gleich -PABA-, -PABC- ist oder fehlt; und
LC fehlt.
LA ausgewählt ist aus: einer Bindung zu AB, -NR-(Bindung zu AB), Alkyl-SO2-heteroaryl, ArylSO2-heteroaryl-,
LB gleich LB1-LB2-LB3 ist, worin LB1 fehlt oder eine oder mehrere Komponenten ist, ausgewählt aus der Gruppe, bestehend aus -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6-Alkyl-, -C(O)NRC1-C6-Alkyl-, -C1-C6-Alkyl (OCH2CH2)1-6-, -C(O)C1-C6-AlkylNRC(O)-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-, -C1-C6-Alkyl(OCH2CH2)1-6-C(O)-, -C1-C6-Alkyl-S-S-C1-C6-alkylNRC(O)CH2-, -C1-C6-Alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6-Alkyl-NRC(O)C1-6-alkyl-, -C(O)-C1-C6-Alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6-Alkyl-phenyl(NR-C(O)C1-C6-alkyl)1-4-, -C(O)C1-C6-Alkyl(OCH2CH2)1-6-NRC(O)C1-C6-alkyl-, -C1-C6-Alkyl-, -S-, -C(O)-CH(NR-C(O)C1-C6-Alkyl)-C1-C6-alkyl- und (-CH2-CH2-O-)1-20, worin LB2 gleich AA0-12 ist, wobei AA eine natürliche Aminosäure, eine nicht-natürliche Aminosäure oder -(CR15)o-S-S-(CR15)p ist, wobei o und p jeweils unabhängig eine ganze Zahl von 1 bis 20 sind, und LB3 gleich -PABA-, -PABC- ist oder fehlt; und
LC fehlt.
worin q gleich 1-10 ist, und jedes b unabhängig CRD, N, NRD, O oder S ist; und
worin jedes RD unabhängig ausgewählt ist aus der Gruppe, bestehend aus H, -C1-C8-Alkyl, -C(O)-C1-C8-Alkyl, -C1-C8-Heteroalkyl, -C6-C14-Aryl, -Aralkyl, -C1-C10-Heterocyclyl, -C3-C8-Carbocyclyl, -C(O)OC1-C8-Alkyl, -C(O)N(C1-C8-Alkyl)2 und -C(O)-Halogen, gegebenenfalls substituiert mit RE.
ou sel pharmaceutiquement acceptable de celui-ci, dans lequel :
F1 et F2 sont chacun indépendamment choisis parmi les systèmes cycliques A, B, C et D :
chaque R est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle, -C2-C6 alcényle, -C2-C6 alcynyle, halogéno, hydroxyle, alcoxy, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, -NO2, -C6-C14 aryle et -C6-C14 hétéroaryle, dans lequel deux ou plusieurs R se joignent optionnellement pour former un cycle ou des cycles, et dans lequel lesdits -C6-C14 aryle et -C6-C14 hétéroaryle sont optionnellement substitués par 1 à 5 substituants indépendamment choisis parmi -C1-C10 alkyle, -C1-C10 alcoxy, -halogéno, -C1-C10 alkylthio, ,-trifluorométhyle, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, C1-C10 alkyl-N(C1-C8 alkyle)2, -C1-C3 alkylthio, -NO2 ou -C1-C10 hétérocyclyle, pour chaque système cyclique dans lequel R apparaît ;
chaque V1 est indépendamment une liaison, O, N(R) ou S, pour chaque système cyclique dans lequel V1 apparaît ;
chaque V2 est indépendamment O, N(R) ou S, pour chaque système cyclique dans lequel V2 apparaît ;
W1 et W2 sont chacun indépendamment H, ou -C1-C5 alkyle, pour chaque système cyclique dans lequel W1 et W2 apparaissent ;
chaque X est indépendamment -OH, -O-acyle, azido, halogéno, cyanate, thiocyanate,
isocyanate, thioisocyanate, ou
pour chaque système cyclique dans lequel X apparaît ;
chaque Y est indépendamment choisi dans le groupe consistant en H, -C1-C6 alkyle-RA, -C(O)RA, -C(S)RA,-C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyle, -NO2 et -PO(ORA)2, pour chaque système cyclique dans lequel Y apparaît, dans lequel chaque RA est indépendamment choisi dans le groupe consistant en H,-C1-C20 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle et -C1-C20 alkylN(R)2, dans lesquels lesdits -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle et -C1-C20 alkylN(R)2 sont optionnellement substitués par 1 à 3 substituants indépendamment choisis parmi R ;
chaque Z est indépendamment choisi dans le groupe consistant en H, et -C1-C8 alkyle et dans lequel lesdits C1-C8 alkyle sont chacun indépendamment choisis parmi 1 à 3 substituants indépendamment choisis parmi R, pour chaque système cyclique dans lequel Z apparaît ;
L1 et L2 sont chacun indépendamment une liaison directe ;
T est choisi parmi :
-C(A1)X1-T2-X1C(B1)-,
où T2 est :
dans lequel chaque X1 est indépendamment une liaison, dans lequel A1 et B1 sont chacun indépendamment =O,
dans lequel g et j valent chacun indépendamment 0 et m vaut 1, et dans lequel D est bicyclo(1.1.1)pentane ou cubane, où ledit bicyclo(1.1.1)pentane ou cubane est optionnellement substitué par -RE, -C(O)RE, -C(O)ORE,-N(RE)2, -N(R)C(O)RE ou -N(R)C(O)ORE, et D est additionnellement optionnellement substitué par 1 ou 2 R, et
dans lequel RE est indépendamment choisi dans le groupe consistant en H, -C1-C8 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, -aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle, -C(O)OC1-C8 alkyle, -C(O)N(C1-C8 alkyle)2, et -C(O)-halogéno, et dans lequel chaque RE est optionnellement substitué par 1 à 3 substituants indépendamment choisis parmi R.
P est :
F1-L1-T-L2-F2
dans lequel :
F1 et F2 sont chacun indépendamment choisis parmi les systèmes cycliques A, B, C et D :
chaque R est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle, -C2-C6 alcényle, -C2-C6 alcynyle, halogéno, hydroxyle, alcoxy, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, -NO2, -C6-C14 aryle et -C6-C14 hétéroaryle, dans lequel deux ou plusieurs R se joignent optionnellement pour former un cycle ou des cycles, et dans lequel lesdits -C6-C14 aryle et -C6-C14 hétéroaryle sont optionnellement substitués par 1 à 5 substituants indépendamment choisis parmi -C1-C10 alkyle, -C1-C10 alcoxy, -halogéno, -C1-C10 alkylthio, ,-trifluorométhyle, -NH2, -NH (C1-C8 alkyle), -N(C1-C8 alkyle)2, C1-C10 alkyl-N(C1-C8 alkyle)2, -C1-C3 alkylthio, -NO2 ou -C1-C10 hétérocyclyle, pour chaque système cyclique dans lequel R apparaît ;
chaque V1 est indépendamment une liaison, O, N(R) ou S, pour chaque système cyclique dans lequel V1 apparaît ;
chaque V2 est indépendamment O, N(R) ou S, pour chaque système cyclique dans lequel V2 apparaît ;
W1 et W2 sont chacun indépendamment H, ou -C1-C5 alkyle, pour chaque système cyclique dans lequel W1 et W2 apparaissent ;
chaque X est indépendamment -OH, -O-acyle, azido, halogéno, cyanate, thiocyanate,
isocyanate, thioisocyanate, ou
pour chaque système cyclique dans lequel X apparaît ;
chaque Y est indépendamment choisi parmi une liaison, H -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA,-C(O)N(RA)2, -C(S)N(RA)2, glycosyle, -NO2 et -P(O)(ORA)2 pour chaque système cyclique dans lequel Y apparaît, dans lequel chaque RA est indépendamment choisi parmi H, -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle,-C1-C20 alkylN(R)2, -C1-C20 alkylène, -C1-C8 hétéroalkylène, -C6-C14 arylène, aralkylène, C1-C10 hétérocyclo, -C3-C8 carbocyclo et -C1-C20 alkylN(R)-, et RF où ledit RA est optionnellement substitué par 1 à 3 substituants indépendamment choisis parmi R, et dans lequel un Y est divalent et est lié à L,
RF est -N(R6)QN(R5)C(O)- et est lié à L au carbonyle adjacent à N(R5), dans lequel R5 et R6 sont chacun indépendamment choisis dans le groupe consistant en H, -C1-C8 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, -aralkyle, C1-C10 hétérocyclyle et -C3-C8 carbocyclyle, ou R5 ou R6 se joint à un carbone substitué par Q pour former un cycle -C1-C10 hétérocyclique ou -C6-C14 hétéroaryle, ou R5 et R6 se joignent ensemble pour former un système cyclique -C1-C10 hétérocyclique ou-C6-C14 hétéroaryle, et où Q est -C1-C8 alkylène-, -C1-C8 hétéroalkylène-, -C6-C14 arylène-, -aralkylène-, -C1-C10 hétérocyclo- ou -C3-C8 carbocyclo-, dans lequel Q, R5 et R6 sont chacun indépendamment optionnellement substitués par 1 à 3 substituants indépendamment choisi parmi R ;
chaque Z est indépendamment choisi dans le groupe consistant en H, et -C1-C8 alkyle et dans lequel lesdits C1-C8 alkyle sont chacun indépendamment choisis parmi 1 à 3 substituants indépendamment choisis parmi R, pour chaque système cyclique dans lequel Z apparaît ;
L1 et L2 sont chacun indépendamment une liaison directe ;
T est choisi parmi :
-C(A1)X1-T2-X1C(B1)-,
où T2 est :
dans lequel chaque X1 est indépendamment une liaison, dans lequel A1 et B1 sont chacun indépendamment =O, dans lequel g et j valent chacun indépendamment 0 et m vaut 1, et dans lequel D est bicyclo(1.1.1)pentane ou cubane, où ledit bicyclo(1.1.1)pentane ou cubane est optionnellement substitué par -RE, -C(O)RE, -C(O)ORE, -N(RE)2,-N(R)C(O)RE ou -N(R)C(O)ORE, et D est additionnellement optionnellement substitué par 1 ou 2 R, et
dans lequel chaque RE est indépendamment choisi dans le groupe consistant en H, -C1-C8 alkyle, -C1-C8 hétéroalkyle, aryle, -aralkyle, -C1-C10 hétérocyclyle,-C3-C8 carbocyclyle, -C(O)OC1-C8 alkyle, -C(O)N(C1-C8 alkyle)2, et -C(O)-halogéno, et dans lequel chaque RE est optionnellement substitué par 1 à 3 substituants indépendamment choisis parmi R ;
L est LA-LB-(LC)1-3, dans lequel LA est choisi dans le groupe consistant en -halogéno, -N(R)2, -CON(R)2,-S-aryle optionnellement substitué par -NO2 ou -CON(R)2, -S-hétéroaryle optionnellement substitué par -NO2, alkyl-SO2-hétéroaryle, arylSO2-hétéroaryle-,
LB est LB1-LB2-LB3 dans lequel LB1 est absent ou est un ou plusieurs composants choisis dans le groupe consistant en -C(O)-, -C(S)-, -C(O)NR-, -C(O)NRC1-C6alkyle-, -C1-C6alkyl(OCH2CH2)1-6-, -C(OC1-C6 alkyle,-C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-,-C(O)C1-C6alkyl-NRC(O)C1-6alkyle-, -N=CR-phényl-O-C1-C6alkyle-, -N=CR-phényl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phényl(NR-C(O)C1-C6alkyle)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyle-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyle- et (-CH2-CH2-O-)1-20,
dans lequel LB2 est AA0-12, dans lequel AA est un acide aminé naturel, un acide aminé non naturel ou-(CR15)o-S-S-(CR15)p où o et p sont chacun indépendamment un entier de 1 à 20,
LB3 est -PABA-, -PABC- ou absent ;
LC est absent ou indépendamment choisi dans le groupe consistant en -C1-C6alkylène-, -NRC3-C8-hétérocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylène-, -S-, -NR-, -NRNR-,-O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylènephénylèneNR-, -NRC1-C6alkylènephénylèneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
et
XA est CR ou N,
XB est CH, CR(C(R)2)1-3NR, CR(C(R)2)1-30, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) ou N,
chaque XC est R,
chaque XD est -(CH2)1-5-, ou est absent ;
XE est O, S, C(R)2, C(R)(C(R)2)1-3-NR2 ou NR et chaque XF est (C(R)2)1-3-NR ou C(R)2)1-3-O.
AB est un anticorps ;
P est :
F1-L1-T-L2-F2
dans lequel :
F1 et F2 sont chacun indépendamment choisis parmi les systèmes cycliques A, B, C et D :
chaque R est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle, -C2-C6 alcényle, -C2-C6 alcynyle, halogéno, hydroxyle, alcoxy, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, -NO2, -C6-C14 aryle et -C6-C14 hétéroaryle, dans lequel deux ou plusieurs R se joignent optionnellement pour former un cycle ou des cycles, et dans lequel lesdits -C6-C14 aryle et -C6-C14 hétéroaryle sont optionnellement substitués par 1 à 5 substituants indépendamment choisis parmi -C1-C10 alkyle, -C1-C10 alcoxy, -halogéno, -C1-C10 alkylthio, ,-trifluorométhyle, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, C1-C10 alkyl-N(C1-C8 alkyle)2, -C1-C3 alkylthio, -NO2 ou -C1-C10 hétérocyclyle, pour chaque système cyclique dans lequel R apparaît ;
chaque V1 est indépendamment une liaison, O, N(R) ou S, pour chaque système cyclique dans lequel V1 apparaît ;
chaque V2 est indépendamment O, N(R) ou S, pour chaque système cyclique dans lequel V2 apparaît ;
W1 et W2 sont chacun indépendamment H, ou -C1-C5 alkyle, pour chaque système cyclique dans lequel W1 et W2 apparaissent ;
chaque X est indépendamment -OH, -O-acyle, azido, halogéno, cyanate, thiocyanate,
isocyanate, thioisocyanate, ou
pour chaque système cyclique dans lequel X apparaît ;
chaque Y est indépendamment choisi parmi une liaison, H -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA,-C(O)N(RA)2, -C(S)N(RA)2, glycosyle, -NO2 et -P(O)(ORA)2 pour chaque système cyclique dans lequel Y apparaît, dans lequel chaque RA est indépendamment choisi parmi H, -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle,-C1-C20 alkylN(R)2, -C1-C20 alkylène, -C1-C8 hétéroalkylène, -C6-C14 arylène, aralkylène, C1-C10 hétérocyclo, -C3-C8 carbocyclo et -C1-C20 alkylN (R) -, et RF où ledit RA est optionnellement substitué par 1 à 3 substituants indépendamment choisis parmi R, et dans lequel un Y est divalent et est lié à L,
RF est -N(R6)QN(R5)C(O)- et est lié à L au carbonyle adjacent à N(R5), dans lequel R5 et R6 sont chacun indépendamment choisis dans le groupe consistant en H, -C1-C8 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, -aralkyle, C1-C10 hétérocyclyle et -C3-C8 carbocyclyle, ou R5 ou R6 se joint à un carbone substitué par Q pour former un cycle -C1-C10 hétérocyclique ou -C6-C14 hétéroaryle, ou R5 et R6 se joignent ensemble pour former un système cyclique -C1-C10 hétérocyclique ou-C6-C14 hétéroaryle, et où Q est -C1-C8 alkylène-, -C1-C8 hétéroalkylène-, -C6-C14 arylène-, -aralkylène-, -C1-C10 hétérocyclo- ou -C3-C8 carbocyclo-, dans lequel Q, R5 et R6 sont chacun indépendamment optionnellement substitués par 1 à 3 substituants indépendamment choisi parmi R ;
chaque Z est indépendamment choisi dans le groupe consistant en H, et -C1-C8 alkyle sont chacun indépendamment choisis parmi 1 à 3 substituants indépendamment choisis parmi R, pour chaque système cyclique dans lequel Z apparaît ;
L1 et L2 sont chacun indépendamment une liaison directe ;
T est choisi parmi :
-C(A1)X1-T2-X1C(B1)-,
où T2 est :
dans lequel chaque X1 est indépendamment une liaison, dans lequel A1 et B1 sont chacun indépendamment =O, dans lequel g et j valent chacun indépendamment 0 et m vaut 1, et dans lequel D est bicyclo(1.1.1)pentane ou cubane, où ledit bicyclo(1.1.1)pentane ou cubane est optionnellement substitué par -RE, -C(O)RE, -C(O)ORE, -N(RE)2,-N(R)C(O)RE ou -N(R)C(O)ORE, et D est additionnellement optionnellement substitué par 1 ou 2 R, et
dans lequel chaque RE est indépendamment choisi dans le groupe consistant en H, -C1-C8 alkyle, -C1-C8 hétéroalkyle, aryle, -aralkyle, -C1-C10 hétérocyclyle,-C3-C8 carbocyclyle, -C(O)OC1-C8 alkyle, -C(O)N(C1-C8 alkyle)2, et -C(O)-halogéno, et dans lequel chaque RE est optionnellement substitué par 1 à 3 substituants indépendamment choisis parmi R ;
L est LA-LB-(LC)1-3,
LA est choisi parmi : une liaison à AB, -NR-(liaison à AB), alkyl-SO2-hétéroaryle, arylSO2-hétéroaryle-,
LB est LB1-LB2-LB3
dans lequel LB1 est absent ou est un ou plusieurs composants choisis dans le groupe consistant en -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6alkyle-, -C(O)NRC1-C6alkyle-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyle-, -N=CR-phényl-O-C1-C6alkyle-, -N=CR-phényl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phényl (NR-C(O)C1-C6alkyle)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyle-, -C1-C6alkyle-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyle- et (-CH2-CH2-O-)1-20,
LB2 est AA0-12, dans lequel AA est un acide aminé naturel, un acide aminé non naturel ou -(CR15)o-S-S-(CR15)p où o et p sont chacun indépendamment un entier de 1 à 20,
LB3 est -PABA-, -PABC- ou est absent ;
LC est absent ou indépendamment choisi dans le groupe consistant en -C1-C6alkylène-, -NRC3-C8-hétérocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylène-, -S-, -NR-, -NRNR-,-O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylènephénylèneNR-, -NRC1-C6alkylènephénylèneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
et
XA est CR ou N,
XB est CH, CR(C(R)2)1-3NR, CR(C(R)2)1-30, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) ou N,
chaque XC est R,
chaque XD est -(CH2)1-5-, ou est absent ;
XE est O, S, C(R)2, C(R)(C(R)2)1-3-NR2 ou NR et chaque XF est (C(R)2)1-3-NR ou C(R)2)1-3-O.
F1 et F2 sont chacun indépendamment choisis parmi les systèmes cycliques A, B, C et D :
chaque R est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle, -C2-C6 alcényle, -C2-C6 alcynyle, halogéno, hydroxyle, alcoxy, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, -NO2, -C6-C14 aryle et -C6-C14 hétéroaryle, dans lequel deux ou plusieurs R se joignent optionnellement pour former un cycle ou des cycles, et dans lequel lesdits -C6-C14 aryle et -C6-C14 hétéroaryle sont optionnellement substitués par 1 à 5 substituants indépendamment choisis parmi -C1-C10 alkyle, -C1-C10 alcoxy, -halogéno, -C1-C10 alkylthio, ,-trifluorométhyle, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, C1-C10 alkyl-N(C1-C8 alkyle)2, -C1-C3 alkylthio, -NO2 ou -C1-C10 hétérocyclyle, pour chaque système cyclique dans lequel R apparaît ;
chaque V1 est indépendamment une liaison, O, N(R) ou S, pour chaque système cyclique dans lequel V1 apparaît ;
chaque V2 est indépendamment O, N(R) ou S, pour chaque système cyclique dans lequel V2 apparaît ;
W1 et W2 sont chacun indépendamment H, ou -C1-C5 alkyle, pour chaque système cyclique dans lequel W1 et W2 apparaissent ;
chaque X est indépendamment -OH, -O-acyle, azido, halogéno, cyanate, thiocyanate,
isocyanate, thioisocyanate, ou
pour chaque système cyclique dans lequel X apparaît ;
chaque Y est indépendamment choisi dans le groupe consistant en H, C1-C6alkyle-RA, -C(O)RA, -C(S)RA,-C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyle, -NO2 et -P(O)(ORA)2 pour chaque système cyclique dans lequel Y apparaît, dans lequel chaque RA est indépendamment choisi parmi H, -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle et -C1-C20 alkylN(R)2, dans lequel lesdits -C1-C20 alkyle, C1-C8 hétéroalkyle, C6-C14 aryle, aralkyle, C1-C10 hétérocyclyle, C3-C8 carbocyclyle et C1-C20 alkylN(R)2 sont substitués par 1 à 3 substituants indépendamment choisis parmi R ;
chaque Z est indépendamment choisi dans le groupe consistant en H, et -C1-C8 alkyle et dans lequel lesdits C1-C8 alkyle sont chacun indépendamment choisis parmi 1 à 3 substituants indépendamment choisis parmi R, pour chaque système cyclique dans lequel Z apparaît ;
L1 et L2 sont chacun indépendamment une liaison directe ;
T est choisi parmi :
-C(A1)X1-T2-X1C(B1)-,
où T2 est :
dans lequel chaque X1 est indépendamment une liaison, dans lequel A1 et B1 sont chacun indépendamment =O, dans lequel g et j valent chacun indépendamment 0 et m vaut 1, et dans lequel D est bicyclo(1.1.1)pentane ou cubane, où ledit bicyclo(1.1.1)pentane ou cubane est substitué par un élément du groupe choisi parmi -N(RE)C(O)- où le carbonyle est lié à L, et -C(O)- où le carbonyle est lié à L, et additionnellement optionnellement substitué par 1 ou 2 R, et
dans lequel chaque RE est indépendamment choisi dans le groupe consistant en H, -C1-C8 alkyle, -C1-C8 hétéroalkyle, aryle, -aralkyle, -C1-C10 hétérocyclyle,-C3-C8 carbocyclyle, -C(O)OC1-C8 alkyle, -C(O)N(C1-C8 alkyle)2, et -C(O)-halogéno, et dans lequel chaque RE est optionnellement substitué par 1 à 3 substituants indépendamment choisis parmi R ;
L est LA-LB-(LC)1-3,
LA est choisi parmi -halogéno, -N(R)2, -CON(R)2,-S-aryle optionnellement substitué par NO2 ou -CONR2,-S-hétéroaryle optionnellement par -NO2, alkyl-SO2-hétéroaryle, arylSO2-hétéroaryle-,
LB est LB1-LB2-LB3
dans lequel LB1 est absent ou est un ou plusieurs composants choisis dans le groupe consistant en -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6alkyle-, -C(O)NRC1-C6alkyle-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyle-, -N=CR-phényl-O-C1-C6alkyle-, -N=CR-phényl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phényl (NR-C(O)C1-C6alkyle)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyle-, C2-C6alkyle-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyle- et (-CH2-CH2-O-)1-20,
LB2 est AA0-12, dans lequel AA est un acide aminé naturel, un acide aminé non naturel ou -(CR15)o-S-S-(CR15)p où o et p sont chacun indépendamment un entier de 1 à 20,
LB3 est -PABA-, -PABC- ou est absent ;
LC est absent ou indépendamment choisi dans le groupe consistant en -C1-C6alkylène-, -NRC3-C8-hétérocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylène-, -S-, -NR-, -NRNR-,-O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylènephénylèneNR-, -NRC1-C6alkylènephénylèneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
et
XA est CR ou N,
XB est CH, CR(C(R)2)1-3NR, CR(C(R)2)1-30, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) ou N,
chaque XC est R,
chaque XD est -(CH2)1-5-, ou est absent ;
XE est O, S, C(R)2, C(R)(C(R)2)1-3-NR2 ou NR et chaque XF est (C(R)2)1-3-NR ou C(R)2-(C(R)2)1-3-O.
AB est un anticorps ;
F1 et F2 sont chacun indépendamment choisis parmi les systèmes cycliques A, B, C et D :
chaque R est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle, -C2-C6 alcényle, -C2-C6 alcynyle, halogéno, hydroxyle, alcoxy, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, -NO2, -C6-C14 aryle et -C6-C14 hétéroaryle, dans lequel deux ou plusieurs R se joignent optionnellement pour former un cycle ou des cycles, et dans lequel lesdits -C6-C14 aryle et -C6-C14 hétéroaryle sont optionnellement substitués par 1 à 5 substituants indépendamment choisis parmi -C1-C10 alkyle, -C1-C10 alcoxy, -halogéno, -C1-C10 alkylthio, ,-trifluorométhyle, -NH2, -NH(C1-C8 alkyle), -N(C1-C8 alkyle)2, C1-C10 alkyl-N(C1-C8 alkyle)2, -C1-C3 alkylthio, -NO2 ou -C1-C10 hétérocyclyle, pour chaque système cyclique dans lequel R apparaît ;
chaque V1 est indépendamment une liaison, O, N(R) ou S, pour chaque système cyclique dans lequel V1 apparaît ;
chaque V2 est indépendamment O, N(R) ou S, pour chaque système cyclique dans lequel V2 apparaît ;
W1 et W2 sont chacun indépendamment H, ou -C1-C5 alkyle, pour chaque système cyclique dans lequel W1 et W2 apparaissent ;
chaque X est indépendamment -OH, -O-acyle, azido, halogéno, cyanate, thiocyanate,
isocyanate, thioisocyanate, ou
pour chaque système cyclique dans lequel X apparaît ;
chaque Y est indépendamment choisi dans le groupe consistant en H, C1-C6alkyle-RA, -C(O)RA, -C(S)RA,-C(O)ORA, -S(O)2ORA, -C(O)N(RA)2, -C(S)N(RA)2, glycosyle, -NO2 et -P(O)(ORA)2 pour chaque système cyclique dans lequel Y apparaît, dans lequel chaque RA est indépendamment choisi dans le groupe H, -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle, et -C1-C20 alkylN(R)2, dans lequel lesdits -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, aralkyle, C1-C10 hétérocyclyle, -C3-C8 carbocyclyle et -C1-C20 alkylN(R2) sont substitués par 1 à 3 substituants indépendamment choisis parmi R ;
chaque Z est indépendamment choisi dans le groupe consistant en H, et -C1-C8 alkyle et dans lequel lesdits C1-C8 alkyle sont chacun indépendamment choisis parmi 1 à 3 substituants indépendamment choisis parmi R, pour chaque système cyclique dans lequel Z apparaît ;
L1 et L2 sont chacun indépendamment une liaison directe ;
T est choisi parmi :
-C(A1)X1-T2-X1C(B1)-,
où T2 est :
dans lequel chaque X1 est indépendamment une liaison, dans lequel A1 et B1 sont chacun indépendamment =O, dans lequel g et j valent chacun indépendamment 0 et m vaut 1, et dans lequel D est bicyclo(1.1.1)pentane ou cubane, où ledit bicyclo(1.1.1)pentane ou cubane est substitué par un élément du groupe choisi parmi -N(RE)C(O), où le carbonyle est lié à L, et -C(O) où le carbonyle est lié à L, et additionnellement optionnellement substitué par 1 ou 2 R, et
dans lequel chaque RE est indépendamment choisi dans le groupe consistant en H, -C1-C8 alkyle, -C1-C8 hétéroalkyle, aryle, -aralkyle, -C1-C10 hétérocyclyle,-C3-C8 carbocyclyle, -C(O)OC1-C8 alkyle, -C(O)N(C1-C8 alkyle)2, et -C(O)-halogéno, et dans lequel chaque RE est optionnellement substitué par 1 à 3 substituants indépendamment choisis parmi R ;
L est LA-LB-(LC)1-3,
LA est choisi parmi : une liaison à AB, -NR-(liaison à AB), alkyl-SO2-hétéroaryle, arylSO2-hétéroaryle-,
LB est LB1-LB2-LB3
dans lequel LB1 est absent ou est un ou plusieurs composants choisis dans le groupe consistant en -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6 alkyle, -C(O)NRC1-C6alkyle-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1- 6NRC(O)CH2-, -C(O)C1-C6alkyl-NRC(O)C1-6alkyle-, -N=CR-phényl-O-C1-C6alkyle-, -N=CR-phényl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phényl(NR-C(O)C1-C6alkyle)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyle-, -C1-C6 alkyle, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyle- et (-CH2-CH2-O-)1-20,
LB2 est AA0-12, dans lequel AA est un acide aminé naturel, un acide aminé non naturel ou -(CR15)o-S-S-(CR15)p où o et p sont chacun indépendamment un entier de 1 à 20,
LB3 est -PABA-, -PABC- ou est absent ;
LC est absent ou indépendamment choisi dans le groupe consistant en -C1-C6alkylène-, -NRC3-C8-hétérocyclylNR-, -NRC3-C8-carbocyclylNR-, -NRC1-C6alkylNR-, -NRC1-C6alkylène-, -S-, -NR-, -NRNR-,-O(CR2)1-4S-S(CR2)1-4N(R)-, -NRC1-C6-alkylènephénylèneNR-, -NRC1-C6alkylènephénylèneSO2NR-, -OC1-C6alkylS-SC1-C6alkylC(COOR)NR-, -NRC(COOR)C1-C6alkylS-SC1-C6alkylO-,
et
XA est CR ou N,
XB est CH, CR(C(R)2)1-3NR, CR(C(R)2)1-30, CR(C(R)2)1-3C(O)NR, CR-(C(R)2)1-3C(O)NRNR, CR(C(R)2)1-3SO2NR, CR(C(R)2)1-3NRNR, CR(C(R)2)1-3NRC(O) ou N,
chaque XC est R,
chaque XD est -(CH2)1-5-, ou est absent ;
XE est O, S, C(R)2, C(R)(C(R)2)1-3-NR2 ou NR et chaque XF est (C(R)2)1-3-NR ou C(R)2)1-3-O.
chaque R est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle et -NH2 ;
chaque V1 est indépendamment O ou N(R) pour chaque système cyclique dans lequel V1 apparaît ;
chaque V2 est indépendamment O ou N(R) pour chaque système cyclique dans lequel V2 apparaît ;
W1 et W2 sont chacun indépendamment H, ou -C1-C5 alkyle, pour chaque système cyclique dans lequel W1 et W2 apparaissent ;
chaque X est indépendamment halogéno, pour chaque système cyclique dans lequel X apparaît ;
chaque Y est indépendamment choisi dans le groupe consistant en H -C(O)RA, -C(O)N(RA)2, glycosyle, -NO2 et -P(O)(ORA)2 pour chaque système cyclique dans lequel Y apparaît, dans lequel chaque RA est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle,-C1-C8 hétéroalkyle, -C3-C8 carbocyclyle et -C1-C20 alkylN(R)2, dans lequel lesdits -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C3-C8 carbocyclyle et -C1-C20 alkylN(R)2 sont substitués par 1 à 3 substituants indépendamment choisis parmi R ;
L1 et L2 sont chacun indépendamment une liaison directe ; et
T est choisi parmi :
-C(A1)X1-T2-X1C(B1)-,
où T2 est :
dans lequel chaque X1 est indépendamment une liaison, dans lequel A1 et B1 sont chacun indépendamment =O, dans lequel g et j valent chacun indépendamment 0 et m vaut 1, et dans lequel D est bicyclo(1.1.1)pentane ou cubane, où ledit bicyclo(1.1.1)pentane ou cubane est optionnellement substitué par -NH2, -N(R)C(O)H ou -N(R)C(O)OH.
chaque R est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle et -NH2 ;
chaque V1 est indépendamment O ou N(R) pour chaque système cyclique dans lequel V1 apparaît ;
chaque V2 est indépendamment O ou N(R) pour chaque système cyclique dans lequel V2 apparaît ;
W1 et W2 sont chacun indépendamment H, ou -C1-C5 alkyle, pour chaque système cyclique dans lequel W1 et W2 apparaissent ;
chaque X est indépendamment halogéno, pour chaque système cyclique dans lequel X apparaît ;
chaque Y est indépendamment choisi parmi une liaison, H -C(O)RA, -C(S)RA, -C(O)ORA, -S(O)2ORA,-C(O)N(RA)2, -C(S)N(RA)2, glycosyle, -NO2 et -P(O)(ORA)2 pour chaque système cyclique dans lequel Y apparaît, dans lequel chaque RA est indépendamment choisi parmi H, -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle,-C1-C2 alkylN(R)2, -C1-C20 alkylène, -C1-C8 hétéroalkylène, -C6-C14 arylène, aralkylène, C1-C10 hétérocyclo, -C3-C8 carbocyclo et -C1-C20 alkylN(R)-, et RF où ledit RA est optionnellement substitué par 1 à 3 substituants indépendamment choisis parmi R, et dans lequel un Y est divalent et est lié à L,
RF est -N(R6)QN(R5)C(O)- et est lié à L au carbonyle adjacent à N(R5), dans lequel R5 et R6 sont chacun indépendamment choisis dans le groupe consistant en H, -C1-C8 alkyle et -C1-C8 hétéroalkyle, ou R5 ou R6 se joint à un carbone substitué par Q pour former un cycle -C1-C10 hétérocyclique ou -C6-C14 hétéroaryle, ou R5 et R6 se joignent ensemble pour former un système cyclique -C1-C10 hétérocyclique ou -C6-C14 hétéroaryle, et où Q est -C1-C8 alkylène-, -C6-C14 arylène-, ou -C3-C8 carbocyclo-, dans lequel Q, R5 et R6 sont chacun indépendamment optionnellement substitués par 1 à 3 substituants indépendamment choisi parmi R ;
L1 et L2 sont chacun indépendamment choisi parmi une liaison directe ; et
T est choisi parmi :
-C(A1)X1-T2-X1C(B1)-,
où T2 est :
dans lequel chaque X1 est indépendamment une liaison, dans lequel A1 et B1 sont chacun indépendamment =O, dans lequel g et j valent chacun indépendamment 0 et m vaut 1, et dans lequel D est bicyclo(1.1.1)pentane ou cubane, où ledit bicyclo(1.1.1)pentane ou cubane est optionnellement substitué par -NH2, -N(R)C(O)H ou -N(R)C(O)OH.
chaque R est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle et -NH2 ;
chaque V1 est indépendamment O ou N(R) pour chaque système cyclique dans lequel V1 apparaît ;
chaque V2 est indépendamment O ou N(R) pour chaque système cyclique dans lequel V2 apparaît ;
W1 et W2 sont chacun indépendamment H, ou -C1-C5 alkyle, pour chaque système cyclique dans lequel W1 et W2 apparaissent ;
chaque X est indépendamment halogéno, pour chaque système cyclique dans lequel X apparaît ;
chaque Y est indépendamment choisi dans le groupe consistant en H -C(O)RA, -C(O)N(RA)2, glycosyle, -NO2 et -P(O)(ORA)2 pour chaque système cyclique dans lequel Y apparaît, dans lequel chaque RA est indépendamment choisi dans le groupe consistant en H, -C1-C20 alkyle,-C1-C8 hétéroalkyle, -C3-C8 carbocyclyle et -C1-C20 alkylN(R)2, dans lequel lesdits -C1-C20 alkyle, -C1-C8 hétéroalkyle, -C3-C8 carbocyclyle et -C1-C20 alkylN(R)2-sont substitués par 1 à 3 substituants indépendamment choisis parmi R ;
L1 et L2 sont chacun indépendamment une liaison directe ; et
T est -C(A1)X1-T2-X1C(B1)-, où T2 est :
dans lequel chaque X1 est indépendamment une liaison, dans lequel A1 et B1 sont chacun indépendamment =O, dans lequel g et j valent chacun indépendamment 0 et m vaut 1, et dans lequel D est bicyclo(1.1.1)pentane ou cubane, où ledit bicyclo(1.1.1)pentane ou cubane est optionnellement substitué par -NH2, -N(R)C(O)H ou -N(R)C(O)OH.
LA est choisi dans le groupe consistant en-halogéno, -N(R)2, -CON(R)2, -S-aryle optionnellement substitué par -NO2 ou -CON(R)2, -S-hétéroaryle optionnellement substitué par -NO2, alkyl-SO2-hétéroaryle, arylSO2-hétéroaryle-, et
LB est LB1-LB2-LB3 dans lequel LB1 est absent ou est un ou plusieurs composants choisis dans le groupe consistant en -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6alkyle-, -C(O)NRC1-C6alkyle-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-,-C(O)C1-C6alkyl-NRC(O)C1-6alkyle-, -N=CR-phényl-O-C1-C6alkyle-, -N=CR-phényl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phényl(NR-C(O)C1-C6alkyle)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyle-, C1-C6alkyle-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl) -C1-C6alkyle- et (-CH2-CH2-O-)1-20, dans lequel LB2 est AA0-12, dans lequel AA est un acide aminé naturel, un acide aminé non naturel ou -(CR15)o-S-S-(CR15)p où o et p sont chacun indépendamment un entier de 1 à 20, et LB3 est -PABA-, -PABC- ou est absent ; et
LC est absent.
LA est choisi parmi : une liaison à AB, -NR-(liaison à AB), alkyl-SO2-hétéroaryle, arylSO2-hétéroaryle-,
LB est LB1-LB2-LB3 dans lequel LB1 est absent ou est un ou plusieurs composants choisis dans le groupe consistant en -C(O)-, -C(S)-, -C(O)NR-, -C(O)C1-C6alkyle-, -C(O)NRC1-C6alkyle-, -C1-C6alkyl(OCH2CH2)1-6-, -C(O)C1-C6alkylNRC(O)-, -C(O)C1-C6alkyl(OCH2CH2)1-6-, -C1-C6alkyl(OCH2CH2)1-6-C(O)-, -C1-C6alkyl-S-S-C1-C6alkylNRC(O)CH2-, -C1-C6alkyl(OCH2CH2)1-6NRC(O)CH2-,-C(O)C1-C6alkyl-NRC(O)C1-6alkyle-, -N=CR-phényl-O-C1-C6alkyle-, -N=CR-phényl-O-C1-C6alkyl-C(O)-, -C(O)-C1-C6alkyl(OCH2CH2)1-6NRC(O)-, -C(O)C1-C6alkyl-phényl(NR-C(O)C1-C6alkyle)1-4-, -C(O)C1-C6alkyl(OCH2CH2)1-6-NRC(O)C1-C6alkyle-, -C1-C6alkyle-, -S-, -C(O)-CH(NR-C(O)C1-C6alkyl)-C1-C6alkyle- et (-CH2-CH2-O-)1-20, LB2 est AA0-12, dans lequel AA est un acide aminé naturel, un acide aminé non naturel ou -(CR15)o-S-S-(CR15)p où o et p sont chacun indépendamment un entier de 1 à 20, LB3 est-PABA-, -PABC- ou est absent ; et
LC est absent.
dans lequel q vaut 1 à 10, et chaque b est indépendamment CRD, N, NRD, O ou S ; et
dans lequel chaque RD est indépendamment choisi dans le groupe consistant en H, -C1-C8 alkyle, -C(O)-C1-C8 alkyle, -C1-C8 hétéroalkyle, -C6-C14 aryle, -aralkyle, -C1-C10 hétérocyclyle, -C3-C8 carbocyclyle, -C(O)OC1-C8 alkyle, -C(O)N(C1-C8 alkyle)2, et -C(O)-halogéno, optionnellement substitué par RE.
REFERENCES CITED IN THE DESCRIPTION
Patent documents cited in the description
Non-patent literature cited in the description