[0001] The invention relates to the field of antibodies. In particular it relates to the
field of therapeutic (human) antibodies for the treatment of diseases involving aberrant
cells. More in particular it relates to antibodies that bind ErbB-2 and ErbB-3 and
their use in the binding of ErbB-2 and ErbB-3 positive cells, particularly tumor cells.
[0002] The human epidermal growth factor receptor family (HER, also collectively referred
to as the ErbB signaling network) is a family of transmembrane receptor tyrosine kinases
(RTK). The family includes the epidermal growth factor receptor (EGFR), also known
as ErbB-1 (or HERl), and the homologous receptors ErbB-2 (HER2), ErbB-3 (HER3) and
ErbB-4 (HER4). The receptors (reviewed in Yarden and Pines 2012) are widely expressed
on epithelial cells. Upregulation of HER receptors or their ligands, such as heregulin
(HRG) or epidermal growth factor (EGF), is a frequent event in human cancer (Wilson,
Fridlyand et al. 2012). Overexpression of ErbB-1 and ErbB-2 in particular occurs in
epithelial tumors and is associated with tumor invasion, metastasis, resistance to
chemotherapy, and poor prognosis (Zhang, Berezov et al. 2007). In the normal breast,
ErbB-3 has been shown to be important in the growth and differentiation of luminal
epithelium. For instance, loss/inhibition of ErbB-3 results in selective expansion
of the basal over the luminal epithelium (Balko, Miller et al. 2012). Binding of ligand
to the extracellular domain of the RTKs induces receptor dimerization, both between
the same (homodimerization) and different (heterodimerization) receptor subtypes.
Dimerization can activate the intracellular tyrosine kinase domains, which undergo
autophosphorylation and, in turn, can activate a number of downstream pro-proliferative
signaling pathways, including those mediated by mitogen-activated protein kinases
(MAPK) and the prosurvival pathway Akt (reviewed in Yarden and Pines, 2012). No specific
endogenous ligand has been identified for ErbB-2, which is therefore assumed to normally
signal through heterodimerization (Sergina, Rausch et al. 2007). ErbB-3 can be activated
by engagement of its ligands. These ligands include but are not limited to neuregulin
(NRG) and heregulin (HRG).
[0003] Various modes of activation of signaling of the ErbB receptor family have been identified.
Among these are ligand dependent and ligand independent activation of signaling. Over-expressed
ErbB-2 is able to generate oncogenic signaling through the ErbB-2:ErbB-3 heterodimer
even in the absence of the ErbB-3 ligand (Junttila, Akita et al. 2009). ErbB-2 activity
can be inhibited by ErbB-2 specific antibodies. Such ErbB-2 specific antibodies are
for instance used in the treatment of ErbB-2 positive (HER2+) tumors. A problem with
such treatments is that often tumors escape the ErbB-2 specific treatment and continue
to grow even in the presence of the inhibiting antibody. It has been observed that
ErbB-2 positive tumors, such as breast, ovarian, cervical and gastric tumors can escape
treatment by the selective outgrowth of a subpopulation of tumor cells that exhibit
upregulated ErbB-3 expression (Ocana, Vera-Badillo et al. 2013) and/or ErbB-3 ligand
expression (Wilson, Fridlyand et al. 2012). Also activating mutations in the ErbB-3
receptor have been identified.
[0004] The anti-ErbB-2 monoclonal antibody trastuzumab (Herceptin) and the ErbB-1 specific
cetuximab (Erbitux) are among several monoclonal antibodies approved for clinical
application. Trastuzumab has a proven survival benefit in metastatic breast cancer
(Arteaga, Sliwkowski et al. 2011). The precise mechanism of action of trastuzumab
has not been unequivocally established. Suggested modes of action are the inhibition
of RTK signaling and the recruitment of antibody dependent cellular cytotoxicity (ADCC).
Other mechanisms of action that have been described include blocking proteolytic cleavage
of the ErbB-2 extracellular domain, inhibition of angiogenic factors and enhancement
of receptor endocytosis. Other agents that interfere with ErbB-2 signaling have been
approved or are under development for treatment of breast and other ErbB-2 overexpression
cancers. For example, the chemical compound lapatinib inhibits both ErbB-1 and ErbB-2
tyrosine kinase activity and is used in first line treatment of ErbB-2 amplified breast
cancer.
In patients with HER2+ metastatic breast cancer, resistance to trastuzumab either
as single-agent or in combination with chemotherapy, commonly occurs within months
of starting therapy. Only a fraction of patients with HER2+ metastatic breast cancer
respond to single agent trastuzumab, suggesting
de novo mechanisms of resistance in advanced cancers. These mechanisms include, among others,
signaling from other HER family of receptors and compensatory signaling from RTKs
outside of the HER family (
Thery et al., Resistance to human epidermal growth factor receptor type 2-targeted
therapies, Eur J Cancer (2014), Vol. 50, Issue 5, pages 892-901 (ttp://dx.doi.org/10.1016/j.ejca.2014.01.003)). For example, overexpression of HER3 or its ligands along with HER2 leads to the
formation of HER-2/HER-3 heterodimers and acquired resistance to trastuzumab. Thus,
the antibody trastuzumab is thought to be ineffective in blocking signaling driven
by ErbB-3 ligands (Wehrman, Raab et al. 2006, Junttila, Akita et al. 2009, Thery et
al. 2014).
[0005] Recently the monoclonal antibody pertuzumab was approved for use in combination with
trastuzumab on the basis of an extra 5 months progression-free survival benefit (Baselga,
Cortes et al. 2012). Pertuzumab also binds ErbB-2 but at a different position than
trastuzumab.
[0006] Other strategies to treat ErbB-2 positive tumors are directed towards ErbB-3. ErbB-3
binding monoclonal antibodies have demonstrated activity in preclinical studies (Schoeberl,
Faber et al. 2010). Some ErbB-3 binding monoclonal antibodies can inhibit proliferation
and growth of a variety of cancers.
[0007] Another strategy involves binding of both the ErbB-2 and ErbB-3 receptor. The molecule
MM-111, is an artificial biological molecule containing two single chain Fv (scFv)
fragments that bind ErbB-2 and ErbB-3. The two scFv are associated with a mutated
human serum albumin (HSA) protein to increase the half-life of the molecule. In preclinical
testing the molecule was shown to inhibit ErbB-3 signaling and proliferation. This
effect was predominantly measured on ErbB-3 positive cell lines that expressed relatively
high amounts of ErbB-2. MM-111 is described in international patent application
WO 2012/125864 (in the name of Merrimack Pharmaceuticals, Inc).
[0008] Robinson et al., British Journal of Cancer 99:9, 1415-1425 (2008) describe a bispecific scFv that binds ErbB-2 and ErbB-3. This bs scFv induces a
modest level of apoptosis of ErbB-2 '+' / ErbB-3 '+' BT-474 and MDA-361/DYT2 cells
in vitro. It was concluded that this bs scFv elicits a cytostatic rather than a cytotoxic effect
on tumor cells. The anti-tumor activity was almost entirely because of its anti-ErbB-3
arm. In accordance with the absence of a Fc part, ADCC activity was not reported.
[0009] Kang et al., mAbs 6:2, 340-353 (2014) describe bispecific antibodies against ErbB-2 and ErbB-3 that are based on Ab6 (anti
ErbB-3) and on trastuzumab or pertuzumab (anti ErbB-2). These antibodies are referred
to as Tab6 and Pab6. When used alone, Tab6 and Pab6 could not inhibit proliferation
of human breast cancer cell lines SK-BR-3, HCC1419 and BT-474. Tab6 only exhibited
anti proliferative activity against these cells in combination with the small molecule
inhibitor lapatinib.
[0011] International patent application
WO 2014/060365 in the name of Universität Zurich Prorektorat MNW describes a bispecific antibody
against ErbB-2 that comprises a first polypeptide ligand that binds to ErbB-2 extracellular
domain I and a second polypeptide ligand that binds to ErbB-2 extracellular domain
IV. ErbB-3 is not targeted.
SUMMARY OF THE INVENTION
[0013] The invention provides a full length bispecific antibody comprising a first antigen-binding
site that binds domain I of ErbB-2 and a second antigen-binding site that binds domain
III of ErbB-3, and wherein the antibody can reduce a ligand-induced receptor function
of ErbB-3 on a ErbB-2 and ErbB-3 positive cell. Said first antigen-binding site is
preferably present in a variable domain comprising a VH chain with the amino acid
sequence of VH chain MF2926; MF2973; MF3004; MF3958 (is humanized MF2971); MF2971;
MF3025; MF2916; MF3991 (is humanized MF3004); MF3031; or MF3003 as depicted in Figure
16A or Figure 16E. Said second antigen-binding site is preferably present in a variable
domain comprising a VH chain with the amino acid sequence of VH chain MF3178; MF3176;
MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062;
MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073
or MF6074 as depicted in Figure 16B or Figure 16E or Figure 37. The immunoglobulin
light chain in the variable domain preferably comprises the amino acid sequence of
figure 16C.
[0014] An antibody of the invention is, unless otherwise specifically specified, preferably
a bispecific antibody.
[0015] The invention further provides a pharmaceutical composition comprising an antibody
according to the invention.
[0016] Further provided is an antibody according to the invention that further comprises
a label, preferably a label for
in vivo imaging.
[0017] Also provided is a bispecific antibody according to the invention for use in the
treatment of a subject having or at risk of having an ErbB-2, ErbB-3 or ErbB-2/ErbB-3
positive tumor.
DETAILED DESCRIPTION OF THE INVENTION
[0018] The invention provides a full length bispecific antibody comprising a first antigen-binding
site that binds domain I of ErbB-2 and a second antigen-binding site that binds domain
III of ErbB-3, wherein the bispecific antibody reduces or can reduce a ligand-induced
receptor function of ErbB-3 on a ErbB-2 and ErbB-3 positive cell.
[0019] As used herein, the term "antigen-binding site" refers to a site derived from and
preferably as present on a bispecific antibody which is capable of binding to antigen.
An unmodified antigen-binding site is typically formed by and present in the variable
domain of the antibody. The variable domain contains said antigen-binding site. A
variable domain that binds an antigen is a variable domain comprising an antigen-binding
site that binds the antigen.
[0020] In one embodiment an antibody variable domain of the invention comprises a heavy
chain variable region (VH) and a light chain variable region (VL). The antigen-binding
site can be present in the combined VH/VL variable domain, or in only the VH region
or only the VL region. When the antigen-binding site is present in only one of the
two regions of the variable domain, the counterpart variable region can contribute
to the folding and/or stability of the binding variable region, but does not significantly
contribute to the binding of the antigen itself.
[0021] As used herein, antigen-binding refers to the typical binding capacity of an antibody
to its antigen. An antibody comprising an antigen-binding site that binds to ErbB-2,
binds to ErbB-2 and, under otherwise identical conditions, at least 100-fold lower
to the homologous receptors ErbB-1 and ErbB-4 of the same species. An antibody comprising
an antigen-binding site that binds to ErbB-3, binds to ErbB-3 and, under otherwise
identical conditions, not to the homologous receptors ErbB-1 and ErbB-4 of the same
species. Considering that the ErbB-family is a family of cell surface receptors, the
binding is typically assessed on cells that express the receptor(s). Binding of an
antibody to an antigen can be assessed in various ways. One way is to incubate the
antibody with the antigen (preferably cells expressing the antigen), removing unbound
antibody (preferably by a wash step) and detecting bound antibody by means of a labeled
antibody that binds to the bound antibody.
[0022] Antigen binding by an antibody is typically mediated through the complementarity
regions of the antibody and the specific three-dimensional structure of both the antigen
and the variable domain allowing these two structures to bind together with precision
(an interaction similar to a lock and key), as opposed to random, non-specific sticking
of antibodies. As an antibody typically recognizes an epitope of an antigen, and as
such epitope may be present in other compounds as well, antibodies according to the
present invention that bind ErbB-2 and/or ErbB-3 may recognize other proteins as well,
if such other compounds contain the same epitope. Hence, the term "binding" does not
exclude binding of the antibodies to another protein or protein(s) that contain the
same epitope. Such other protein(s) is preferably not a human protein. An ErbB-2 antigen-binding
site and an ErbB-3 antigen-binding site as defined in the present invention typically
do not bind to other proteins on the membrane of cells in a post-natal, preferably
adult human. A bispecific antibody according to the present invention is typically
capable of binding ErbB-2 and ErbB-3 with a binding affinity of at least 1x10e-6 M,
as outlined in more detail below.
[0023] The term "interferes with binding" as used herein means that the antibody is directed
to an epitope on ErbB-3 and the antibody competes with ligand for binding to ErbB-3.
The antibody may diminish ligand binding, displace ligand when this is already bound
to ErbB-3 or it may, for instance through steric hindrance, at least partially prevent
that ligand can bind to ErbB-3.
[0024] The term "antibody" as used herein means a proteinaceous molecule, preferably belonging
to the immunoglobulin class of proteins, containing one or more variable domains that
bind an epitope on an antigen, where such domains are derived from or share sequence
homology with the variable domain of an antibody. Antibodies for therapeutic use are
preferably as close to natural antibodies of the subject to be treated as possible
(for instance human antibodies for human subjects). Antibody binding can be expressed
in terms of specificity and affinity. The specificity determines which antigen or
epitope thereof is specifically bound by the binding domain. The affinity is a measure
for the strength of binding to a particular antigen or epitope. Specific binding,
is defined as binding with affinities (KD) of at least 1x10e-6 M, more preferably
1x10e-7 M, more preferably higher than 1x10e-9 M. Typically, antibodies for therapeutic
applications have affinities of up to 1x10e-10 M or higher. Antibodies such as the
bispecific antibodies of the present invention comprise the constant domains (Fc part)
of a natural antibody. An antibody of the invention is typically a bispecific full
length antibody, preferably of the human IgG subclass. Preferably, an antibody of
the present invention is of the human IgG1 subclass. Such antibodies of the invention
have good ADCC properties, have favorable half life upon in vivo administration to
humans and CH3 engineering technology exists that can provide for modified heavy chains
that preferentially form heterodimers over homodimers upon co-expression in clonal
cells.
[0025] An antibody of the invention is a "full length" antibody. The term 'full length'
according to the invention is defined as comprising an essentially complete antibody,
which however does not necessarily have all functions of an intact antibody. For the
avoidance of doubt, a full length antibody contains two heavy and two light chains.
Each chain contains constant (C) and variable (V) regions, which can be broken down
into domains designated CH1, CH2, CH3, VH, and CL, VL. An antibody binds to antigen
via the variable domains contained in the Fab portion, and after binding can interact
with molecules and cells of the immune system through the constant domains, mostly
through the Fc portion. The terms 'variable domain', 'VH/VL pair', 'VH/VL' are used
herein interchangeably. Full length antibodies according to the invention encompass
antibodies wherein mutations may be present that provide desired characteristics.
Such mutations should not be deletions of substantial portions of any of the regions.
However, antibodies wherein one or several amino acid residues are deleted, without
essentially altering the binding characteristics of the resulting antibody are embraced
within the term "full length antibody". For instance, an IgG antibody can have 1-20
amino acid residue insertions, deletions or a combination thereof in the constant
region. For instance, ADCC activity of an antibody can be improved when the antibody
itself has a low ADCC activity, by slightly modifying the constant region of the antibody
(
Junttila, T. T., K. Parsons, et al. (2010). "Superior In vivo Efficacy of Afucosylated
Trastuzumab in the Treatment of HER2-Amplified Breast Cancer." Cancer Research 70(11):
4481-4489)
[0026] Full length IgG antibodies are preferred because of their favourable half life and
the need to stay as close to fully autologous (human) molecules for reasons of immunogenicity.
An antibody of the invention is preferably a bispecific IgG antibody, preferably a
bispecific full length IgG1 antibody. IgG1 is favoured based on its long circulatory
half life in man. In order to prevent any immunogenicity in humans it is preferred
that the bispecific IgG antibody according to the invention is a human IgG1.
[0027] The term 'bispecific' (bs) means that one part of the antibody (as defined above)
binds to one epitope on an antigen whereas a second part binds to a different epitope.
The different epitope is typically present on a different antigen. According to the
present invention, said first and second antigens are in fact two different proteins.
A preferred bispecific antibody is an antibody that comprises parts of two different
monoclonal antibodies and consequently binds to two different types of antigen. One
arm of the bispecific antibody typically contains the variable domain of one antibody
and the other arm contains the variable domain of another antibody. The heavy chain
variable regions of the bispecific antibody of the invention are typically different
from each other, whereas the light chain variable regions are preferably the same
in the bispecific antibodies of the invention. A bispecific antibody wherein the different
heavy chain variable regions are associated with the same, or a common, light chain
is also referred to as a bispecific antibody with a common light chain. Further provided
is therefore a bispecific antibody according to the invention, wherein both arms comprise
a common light chain.
[0028] Preferred bispecific antibodies can be obtained by co-expression of two different
heavy chains and a common light chain in a single cell. When wildtype CH3 domains
are used, co-expression of two different heavy chains and a common light chain will
result in three different species, AA, AB and BB. To increase the percentage of the
desired bispecific product (AB) CH3 engineering can be employed, or in other words,
one can use heavy chains with compatible heterodimerization domains, as defined hereunder.
[0029] The term 'compatible heterodimerization domains' as used herein refers to protein
domains that are engineered such that engineered domain A' will preferentially form
heterodimers with engineered domain B' and vice versa, whereas homodimerization between
A'-A' and B'-B' is diminished.
[0030] The term 'common light chain' according to the invention refers to light chains which
may be identical or have some amino acid sequence differences while the binding specificity
of the full length antibody is not affected. It is for instance possible within the
scope of the definition of common light chains as used herein, to prepare or find
light chains that are not identical but still functionally equivalent, e.g., by introducing
and testing conservative amino acid changes, and/or changes of amino acids in regions
that do not or only partly contribute to binding specificity when paired with the
heavy chain. The terms 'common light chain', 'common VL', 'single light chain', 'single
VL', with or without the addition of the term 'rearranged' are all used herein interchangeably.
It is an aspect of the present invention to use as common light chain a human light
chain that can combine with different heavy chains to form antibodies with functional
antigen binding domains (
WO2004/009618,
WO2009/157771, Merchant et al. 1998 and Nissim et al. 1994). Preferably, the common light chain has a germline sequence.
A preferred germline sequence is a light chain variable region that is frequently
used in the human repertoire and has good thermodynamic stability, yield and solubility.
A preferred germline light chain is 012, preferably the rearranged germline human
kappa light chain IgVK1-39*01/IGJK1*01 or a fragment or a functional equivalent (i.e.
same IgVK1-39 gene segment but different IGJK gene segment) thereof (nomenclature
according to the IMGT database worldwide web at imgt.org). Further provided is therefore
a bispecific antibody according to the invention, wherein said common light chain
is a germline light chain, preferably a rearranged germline human kappa light chain
comprising the IgVKl-39 gene segment, most preferably the rearranged germline human
kappa light chain IgVK1-39*01/IGJK1*01. The terms rearranged germline human kappa
light chain IgVK1-39*01/IGJK1*01, IGKV1-39/IGKJ1, huVK1-39 light chain or in short
huVK1-39 are used interchangeably throughout the application. Obviously, those of
skill in the art will recognize that "common" also refers to functional equivalents
of the light chain of which the amino acid sequence is not identical. Many variants
of said light chain exist wherein mutations (deletions, substitutions, additions)
are present that do not materially influence the formation of functional binding regions.
The light chain of the present invention can also be a light chain as specified herein
above, having 1-5 amino acid insertions, deletions, substitutions or a combination
thereof.
[0031] Also contemplated are antibodies wherein a VH is capable of specifically recognizing
a first antigen and the VL, paired with the VH in a immunoglobulin variable domain,
is capable of specifically recognizing a second antigen. The resulting VH/VL pair
will bind either antigen 1 or antigen 2. Such so called "two-in-one antibodies", described
in for instance
WO 2008/027236,
WO 2010/108127 and
Schaefer et al (Cancer Cell 20, 472-486, October 2011), are different from bispecific antibodies of the invention and are further referred
to as "two-in-one" antibodies. Such "two-in-one" antibodies have identical arms and
are not antibodies of the present invention.
[0032] The term 'ErbB-2' as used herein refers to the protein that in humans is encoded
by the ERBB-2 gene. Alternative names for the gene or protein include CD340; HER-2;
HER-2/neu; MLN 19; NEU; NGL; TKR1. The ERBB-2 gene is frequently called HER2 (from
human epidermal growth factor receptor 2). Where reference is made herein to ErbB-2,
the reference refers to human ErbB-2. An antibody comprising an antigen-binding site
that binds ErbB-2, binds human ErbB-2. The ErbB-2 antigen-binding site may, due to
sequence and tertiary structure similarity between human and other mammalian orthologs,
also bind such an ortholog but not necessarily so. Database accession numbers for
the human ErbB-2 protein and the gene encoding it are (NP_001005862.1, NP_004439.2
NC_000017.10 NT_010783.15 NC_018928.2). The accession numbers are primarily given
to provide a further method of identification of ErbB-2 as a target, the actual sequence
of the ErbB-2 protein bound the antibody may vary, for instance because of a mutation
in the encoding gene such as those occurring in some cancers. The ErbB-2 antigen binding
site binds ErbB-2 and a variety of variants thereof, such as those expressed by some
ErbB-2 positive tumor cells.
[0033] The term 'ErbB-3' as used herein refers to the protein that in humans is encoded
by the ERBB-3 gene. Alternative names for the gene or protein are HER3; LCCS2; MDA-BF-1;
c-ErbB-3; c-erbb-3; erbb-3-S; p180-Erbb-3; p45-sErbb-3; and p85-sErbb-3. Where reference
is made herein to ErbB-3, the reference refers to human ErbB-3. An antibody comprising
an antigen-binding site that binds ErbB-3, binds human ErbB-3. The ErbB-3 antigen-binding
site, may, due to sequence and tertiary structure similarity between human and other
mammalian orthologs, also bind such an ortholog but not necessarily so. Database accession
numbers for the human ErbB-3 protein and the gene encoding it are (NP_001005915.1
NP_001973.2, NC_000012.11 NC_018923.2 NT_029419.12). The accession numbers are primarily
given to provide a further method of identification of ErbB-3 as a target, the actual
sequence of the ErbB-3 protein bound by an antibody may vary, for instance because
of a mutation in the encoding gene such as those occurring in some cancers. The ErbB-3
antigen binding site binds ErbB-3 and a variety of variants thereof, such as those
expressed by some ErbB-2 positive tumor cells.
[0034] A bispecific antibody of the invention that comprises a first antigen-binding site
that binds ErbB-2 and a second antigen-binding site that binds ErbB-3, can reduce
or reduces a ligand-induced receptor function of ErbB-3 on an ErbB-2 and ErbB-3 positive
cell. In the presence of excess ErbB-2, ErbB-2/ErbB-3 heterodimers may provide a growth
signal to the expressing cell in the absence of detectable ligand for the ErbB-3 chain
in the heterodimer. This ErbB-3 receptor function is herein referred as a ligand-independent
receptor function of ErbB-3. The ErbB-2/ErbB-3 heterodimer also provide a growth signal
to the expressing cell in the presence of an ErbB-3 ligand. This ErbB-3 receptor function
is herein referred to as a ligand-induced receptor function of ErbB-3.
[0035] The term "ErbB-3 ligand" as used herein refers to polypeptides which bind and activate
ErbB-3. Examples of ErbB-3 ligands include, but are not limited to neuregulin 1 (NRG)
and neuregulin 2, betacellulin, heparin-binding epidermal growth factor, and epiregulin.
The term includes biologically active fragments and/or variants of a naturally occurring
polypeptide.
[0036] In a preferred embodiment of the invention the ligand-induced receptor function of
ErbB-3 is ErbB-3 ligand-induced growth of an ErbB-2 and ErbB-3 positive cell. In a
preferred embodiment said cell is an MCF-7 cell (ATCC® HTB-22™); an SKBR3 (ATCC® HTB-30™)
cell; an NCI-87 (ATCC® CRL-5822™) cell; a BxPC-3-luc2 cell (Perkin Elmer 125058),
a BT-474 cell (ATCC® HTB-20™) or a JIMT-1 cell (DSMZ no.: ACC 589).
[0037] In a preferred embodiment the ErbB-2 and ErbB-3 positive cell comprises at least
50.000 ErbB-2 receptors on the cell surface. In a preferred embodiment at least 100.000
ErbB-2 receptors. In one preferred embodiment, the ErbB-2 and ErbB-3 positive cell
comprises at least 1.000.000 ErbB-2 receptors on the cell surface. In another preferred
embodiment the ErbB-2 and ErbB-3 positive cell comprises no more than 1.000.000 ErbB-2
receptors on the cell surface. Currently used therapies such as trastuzumab (Herceptin)
and pertuzumab are only prescribed for patients with malignant ErbB-2 positive cells
that have more than 1.000.000 ErbB-2 receptors on their cell surface, in order to
obtain a clinical response. Patients with ErbB-2 positive tumor cells with more than
1.000.000 ErbB-2 receptors on their cell surface are typically classified as ErbB-2
[+++]. Patients are for instance classified using the HercepTest™ and/or HER2 FISH
(pharm Dx™), marketed both by Dako Denmark A/S, and/or using a HERmark® assay, marketed
by Monogram Biosciences. Trastuzumab and pertuzumab are only prescribed to ErbB-2
[+++] patients because patients with lower ErbB-2 concentrations typically do not
exhibit a sufficient clinical response when treated with trastuzumab and pertuzumab.
The invention, however, provides bispecific antibodies that also have an improved
binding affinity for cells with a lower ErbB-2 receptor concentration, as compared
to trastuzumab. As shown in the Examples, proliferation of such cells with lower ErbB2
expression is effectively counteracted with an antibody according to the invention.
Such lower ErbB-2 receptor concentration is present on malignant cells of patients
that are classified as ErbB-2 [++] or ErbB-2 [+]. Also, relapsed ErbB-2 positive tumors
often have an ErbB-2 receptor concentration of lower than 1.000.000 receptors per
cell. Such ErbB-2 [++] or ErbB-2 [+] patients, as well as patients with a relapsed
ErbB-2 positive tumor, are therefore preferably treated with a bispecific antibody
according to the present invention. Further provided is therefore a full length bispecific
antibody comprising a first antigen-binding site that binds domain I of ErbB-2 and
a second antigen-binding site that binds domain III of ErbB-3, wherein the antibody
can reduce ligand-induced growth of an ErbB-2 and ErbB-3 positive cell that has less
than 1.000.000 ErbB-2 cell-surface receptors. Also disclosed is a method for the treatment
of a subject having a ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor or at risk of
having said tumor, wherein said tumor has less than 1.000.000 ErbB-2 cell-surface
receptors per cell, the method comprising administering to the subject a bispecific
antibody or pharmaceutical composition according to the invention. A bispecific antibody
according to the invention for use in the treatment of a subject having or at risk
of having an ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor, wherein said tumor has
less than 1.000.000 ErbB-2 cell-surface receptors per cell, is also herewith provided.
Said antibody according to the present invention is typically capable of reducing
a ligand-induced receptor function, preferably ligand induced growth, of ErbB-3 on
a ErbB-2 and ErbB-3 positive cell. Said antibody according to the invention comprises
a first antigen-binding site that binds domain I of ErbB-2 and a second antigen-binding
site that binds domain III of ErbB-3. In one preferred embodiment, the affinity of
said second antigen-binding site for an ErbB-3 positive cell is equal to, or higher
than, the affinity of said first antigen-binding site for an ErbB-2 positive cell,
as explained herein below in more detail. The affinity of said second antigen-binding
site for an ErbB-3 positive cell is preferably lower than or equal to 2.0 nM, more
preferably lower than or equal to 1.39 nM, more preferably lower than or equal to
0.99 nM. The affinity of said first antigen-binding site for an ErbB-2 positive cell
is preferably lower than or equal to 5.0 nM, preferably lower than or equal to 4.5
nM preferably lower than or equal to 4.0 nM.
[0038] In one preferred embodiment, said antibody according to the invention comprises an
antigen-binding site that binds at least one amino acid of domain I of ErbB-2 selected
from the group consisting of T144, T164, R166, P172, G179, S180 and R181, and surface-exposed
amino acid residues that are located within about 5 amino acid positions from T144,
T164, R166, P172, G179, S180 or R181.
In one preferred embodiment, said antibody according to the invention preferably comprises
an antigen-binding site that binds at least one amino acid of domain III of ErbB-3
selected from the group consisting of R426 and surface-exposed amino acid residues
that are located within 11.2 Å from R426 in the native ErbB-3 protein.
[0039] To establish whether a tumor is positive for ErbB-3 the skilled person can for instance
determine the ErbB-3 amplification and/or staining in immunohistochemistry. At least
10% tumor cells in a biopt should be positive. The biopt can also contain 20%, 30%
40% 50% 60% 70% or more positive cells.
[0040] As used herein the ligand-induced receptor function is reduced by at least 20%, preferably
at least 30, 40, 50 60, or at least 70%, in a particularly preferred embodiment the
ligand-induced receptor function is reduced by 80, more preferably by 90%. The reduction
is preferably determined by determining a ligand-induced receptor function in the
presence of a bispecific antibody of the invention, and comparing it with the same
function in the absence of the antibody, under otherwise identical conditions. The
conditions comprise at least the presence of an ErbB-3 ligand. The amount of ligand
present is preferably an amount that induces half of the maximum growth of an ErbB-2
and ErbB-3 positive cell line. The ErbB-2 and ErbB-3 positive cell line for this test
is preferably the MCF-7 cell line (ATCC® HTB-22™), the SKBR3 cell line (ATCC® HTB-30™)
cells, the JIMT-1 cell line (DSMZ ACC 589) or the NCI-87 cell line (ATCC® CRL-5822™).
The test and/or the ligand for determining ErbB-3 ligand-induced receptor function
is preferably a test for ErbB-3 ligand induced growth reduction as specified in the
examples.
[0041] The ErbB-2 protein contains several domains (see for reference figure 1 of
Landgraf, R Breast Cancer Res. 2007; 9(1): 202-). The extracellular domains are referred to as domains I-IV. The place of binding
to the respective domains of antigen-binding sites of antibodies described herein
has been mapped (see examples). A bispecific antibody of the invention with an antigen-binding
site (first antigen-binding site) that binds domain I of ErbB-2 (first antigen-binding
site) comprises a heavy chain variable region that maintains significant binding specificity
and affinity for ErbB-2 when combined with various light chains. Bispecific antibodies
with an antigen-binding site (first antigen-binding site) that binds domain I or domain
IV of ErbB-2 (first antigen-binding site) and an antigen-binding site for ErbB-3 (second
antigen-binding site) were found to be more effective in reducing a ligand-induced
receptor function of ErbB-3 when compared to a bispecific antibody comprising an antigen-binding
site (first antigen-binding site) that binds to another extra-cellular domain of ErbB-2.
A bispecific antibody comprising an antigen-binding site (first antigen-binding site)
that binds ErbB-2, wherein said antigen-binding site binds to domain I of ErbB-2 is
preferred. A bispecific antibody with an antigen-binding site (first antigen-binding
site) that binds ErbB-2, and that further comprises ADCC was found to be more effective
than other ErbB-2 binding antibodies that did not have significant ADCC activity,
particularly
in vivo. A bispecific antibody according to the invention which exhibits ADCC is therefore
preferred. It was found that antibodies wherein said first antigen-binding site binds
to domain IV of ErbB-2 had intrinsic ADCC activity. A domain I binding ErbB-2 binding
antibody that has low intrinsic ADCC activity can be engineered to enhance the ADCC
activity. Fc regions mediate antibody function by binding to different receptors on
immune effector cells such as macrophages, natural killer cells, B-cells and neutrophils.
Some of these receptors, such as CD16A (FcγRIIIA) and CD32A (FcγRIIA), activate the
cells to build a response against antigens. Other receptors, such as CD32B, inhibit
the activation of immune cells. By engineering Fc regions (through introducing amino
acid substitutions) that bind to activating receptors with greater selectivity, antibodies
can be created that have greater capability to mediate cytotoxic activities desired
by an anti-cancer Mab.
[0042] One technique for enhancing ADCC of an antibody is afucosylation. (See for instance
Junttila, T. T., K. Parsons, et al. (2010). "Superior In vivo Efficacy of Afucosylated
Trastuzumab in the Treatment of HER2-Amplified Breast Cancer." Cancer Research 70(11):
4481-4489). Further provided is therefore a bispecific antibody according to the invention,
which is afucosylated. Alternatively, or additionally, multiple other strategies can
be used to achieve ADCC enhancement, for instance including glycoengineering (Kyowa
Hakko/Biowa, GlycArt (Roche) and Eureka Therapeutics) and mutagenesis (Xencor and
Macrogenics), all of which seek to improve Fc binding to low-affinity activating FcγRIIIa,
and/or to reduce binding to the low affinity inhibitory FcγRIIb.
[0043] Several
in vitro methods exist for determining the efficacy of antibodies or effector cells in eliciting
ADCC. Among these are chromium-51 [Cr51] release assays, europium [Eu] release assays,
and sulfur-35 [S35] release assays. Usually, a labeled target cell line expressing
a certain surface-exposed antigen is incubated with antibody specific for that antigen.
After washing, effector cells expressing Fc receptor CD16 are typically co-incubated
with the antibody-labeled target cells. Target cell lysis is subsequently typically
measured by release of intracellular label, for instance by a scintillation counter
or spectrophotometry. A preferred test is detailed in the Examples.
[0044] One advantage of the present invention is the fact that binding of antibodies according
to the invention such as for instance PB4188 to ErbB-2 and ErbB-3 positive cells results
in internalization that is to the same extent as compared to trastuzumab. If a combination
of trastuzumab and pertuzumab is used, internalization of these antibodies is enhanced.
This enhanced internalization, however, results in reduced ADCC. An antibody according
to the present invention resulting in internalization that is essentially to the same
extent as compared to trastuzumab is, therefore, preferred over a combination of trastuzumab
and pertuzumab because with such antibody the ADCC activity is better maintained.
[0045] An antibody of the invention comprising an antigen-binding site that binds ErbB-3,
interferes with binding of an ErbB-3 ligand to ErbB-3. Such antibodies are more effective
in reducing a ligand-induced receptor function of ErbB-3 on an ErbB-2 and ErbB-3 positive
cell line, particularly in the context of a bi-specific antibody that also comprises
an antigen-binding site that binds ErbB-2.
[0046] The current invention provides a bispecific antibody according to the invention comprising
a first antigen-binding site that binds ErbB-2 and a second antigen-binding site that
binds ErbB-3, wherein said first antigen-binding site binds domain I of ErbB-2. As
shown in the Examples, bispecific antibodies having these characteristics are well
capable of binding ErbB-2 and ErbB-3 positive cells and counteracting their activity
(such as the ligand-induced receptor function of ErbB-3 and the ligand-induced growth
of an ErbB-2 and ErbB3 positive cell). Moreover, bispecific antibodies according to
the invention comprising a first antigen-binding site that binds domain I of ErbB-2
are particularly suitable for use in combination with existing anti-ErbB-2 therapies
like trastuzumab and pertuzumab, because trastuzumab and pertuzumab bind different
domains of ErbB-2. Trastuzumab binds domain IV of ErbB-2 and pertuzumab binds domain
II of ErbB-2. Hence, bispecific antibodies according to the invention that bind domain
I of ErbB-2 are preferred because they do not compete with trastuzumab and pertuzumab
for the same epitope.
[0047] The invention provides a bispecific antibody according to the invention comprising
a first antigen-binding site that binds ErbB-2 and a second antigen-binding site that
binds ErbB-3, wherein said second antigen-binding site binds domain III of ErbB-3.
Such antibody according to the invention is particularly suitable for combination
therapy with currently used anti- ErbB-3 binding molecules that do not bind domain
III of ErbB-3, such as MM-121 (Merrimack Pharmaceuticals; also referred to as #Ab6)
and RG7116 (Roche) that bind domain I of ErbB-3, because then the different binding
molecules do not compete with each other for the same epitope.
[0048] A bispecific antibody is provided that comprises a first antigen-binding site that
binds ErbB-2 and a second antigen-binding site that binds ErbB-3, wherein said first
antigen-binding site binds domain I of ErbB-2 and said second antigen-binding site
binds domain III of ErbB-3. Such antibody is particularly suitable for combination
therapy with anti- ErbB-2 binding molecules that do not bind domain I of ErbB-2, such
as trastuzumab and pertuzumab, and with anti- ErbB-3 binding molecules that do not
bind domain III of ErbB-3, such as MM-121 (#Ab6) and RG7116.
[0049] The invention provides a bispecific antibody that comprises a first antigen-binding
site that binds ErbB-2 and a second antigen-binding site that binds ErbB-3, wherein
said first antigen-binding site binds domain I of ErbB-2 and said second antigen-binding
site binds domain III of ErbB-3 and wherein the antibody can reduce a ligand-induced
receptor function of ErbB-3 on a ErbB-2 and ErbB-3 positive cell. Said antibody can
preferably reduce ligand-induced growth of an ErbB-2 and ErbB-3 positive cell.
[0050] Further embodiments of the invention provide a bispecific antibody according to the
invention comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein the affinity (KD) of said second antigen-binding site
for an ErbB-3 positive cell is equal to, or higher than, the affinity of said first
antigen-binding site for an ErbB-2 positive cell. Contrary to prior art bispecific
compounds such as for instance MM-111 from Merrimack Pharmaceuticals, which have a
higher affinity for ErbB-2 than for ErbB-3, the present invention provides bispecific
antibodies which have an ErbB-3-specific arm with an affinity for ErbB-3 on cells
that is higher than the affinity of the ErbB-2-specific arm for ErbB-2 on cells. Such
bispecific antibodies are better capable of binding ErbB-3, despite the low cell surface
concentration of ErbB-3. This provides the advantage that the functional activity
against ErbB-3 is enhanced as compared to prior art compounds, meaning that these
bispecific antibodies according to the invention are better capable of counteracting
ErbB-3 activity (such as ligand-induced growth).
[0051] As used herein, the term "affinity" refers to the KD value.
[0052] The affinity (KD) of said second antigen-binding site for an ErbB-3 positive cell
is preferably lower than or equal to 2.0 nM, more preferably lower than or equal to
1.5 nM, more preferably lower than or equal to 1.39 nM, more preferably lower than
or equal to 0.99 nM. In one preferred embodiment, the affinity of said second antigen-binding
site for ErbB-3 on SK-BR-3 cells is lower than or equal to 2.0 nM, more preferably
lower than or equal to 1.5 nM, more preferably lower than or equal to 1.39 nM, preferably
lower than or equal to 0.99 nM. In one embodiment, said affinity is within the range
of 1.39-0.59 nM. In one preferred embodiment, the affinity of said second antigen-binding
site for ErbB-3 on BT-474 cells is lower than or equal to 2.0 nM, more preferably
lower than or equal to 1.5 nM, more preferably lower than or equal to 1.0 nM, more
preferably lower than 0.5 nM, more preferably lower than or equal to 0.31 nM, more
preferably lower than or equal to 0.23 nM. In one embodiment, said affinity is within
the range of 0.31-0.15 nM. The above-mentioned affinities are preferably as measured
using steady state cell affinity measurements, wherein cells are incubated at 4°C
using radioactively labeled antibody, where after cell-bound radioactivity is measured,
as described in the Examples.
[0053] The affinity (KD) of said first antigen-binding site for an ErbB-2 positive cell
is preferably lower than or equal to 5.0 nM, more preferably lower than or equal to
4.5 nM, more preferably lower than or equal to 3.9 nM. In one preferred embodiment,
the affinity of said first antigen-binding site for ErbB-2 on SK-BR-3 cells is lower
than or equal to 5.0 nM, preferably lower than or equal to 4.5 nM, more preferably
lower than or equal to 4.0 nM, more preferably lower than or equal to 3.5 nM, more
preferably lower than or equal to 3.0 nM, more preferably lower than or equal to 2.3
nM. In one embodiment, said affinity is within the range of 3.0-1.6 nM. In one preferred
embodiment, the affinity of said first antigen-binding site for ErbB-2 on BT-474 cells
is lower than or equal to 5.0 nM, preferably lower than or equal to 4.5 nM, more preferably
lower than or equal to 3.9 nM. In one embodiment, said affinity is within the range
of 4.5-3.3 nM. The above-mentioned affinities are preferably as measured using steady
state cell affinity measurements, wherein cells are incubated at 4°C using radioactively
labeled antibody, where after cell-bound radioactivity is measured, as described in
the Examples.
[0054] In one preferred embodiment, a bispecific antibody according to the invention is
provided, wherein the affinity (KD) of said bispecific antibody for BT-474 cells is
lower than or equal to 5.0 nM, preferably lower than or equal to 4.5 nM, more preferably
lower than or equal to 4.0 nM, more preferably lower than or equal to 3.5 nM, more
preferably lower than or equal to 3.7 nM, preferably lower than or equal to 3.2 nM.
In one embodiment, said affinity is within the range of 3.7-2.7 nM. In one preferred
embodiment, a bispecific antibody according to the invention is provided, wherein
the affinity of said bispecific antibody for SK-BR-3 cells is lower than or equal
to 5.0 nM, preferably lower than or equal to 4.5 nM, more preferably lower than or
equal to 4.0 nM, more preferably lower than or equal to 3.5 nM, more preferably lower
than or equal to 3.0 nM, preferably lower than or equal to 2.5 nM, more preferably
lower than or equal to 2.0 nM. In one embodiment, said affinity is within the range
of 2.4-1.6 nM. Again, the above-mentioned affinities are preferably as measured using
steady state cell affinity measurements, wherein cells are incubated at 4°C using
radioactively labeled antibody, where after cell-bound radioactivity is measured,
as described in the Examples.
[0055] Further preferred embodiments of the invention provide a bispecific antibody according
to the invention comprising a first antigen-binding site that binds ErbB-2 and a second
antigen-binding site that binds ErbB-3, wherein the affinity (KD) of said second antigen-binding
site for an ErbB-3 positive cell is equal to, or higher than, the affinity of said
first antigen-binding site for an ErbB-2 positive cell, and wherein the antibody can
reduce a ligand-induced receptor function of ErbB-3 on a ErbB-2 and ErbB-3 positive
cell. Said antibody can preferably reduce ligand-induced growth of an ErbB-2 and ErbB-3
positive cell.
[0056] The above-mentioned antibodies according to the invention with a high affinity for
ErbB-3 bind domain I of ErbB2 and domain III of ErbB-3. In a particularly preferred
embodiment a bispecific antibody according to the invention is provided that comprises
a first antigen-binding site that binds domain I of ErbB-2 and a second antigen-binding
site that binds domain III of ErbB-3, wherein the affinity of said second antigen-binding
site for an ErbB-3 positive cell is equal to, or higher than, the affinity of said
first antigen-binding site for an ErbB-2 positive cell.
[0057] Said second antigen-binding site preferably binds domain III of ErbB-3 and has an
affinity (KD) for an ErbB-3 positive cell that is lower than or equal to 2.0 nM, more
preferably lower than or equal to 1.5 nM, preferably lower than or equal to 1.39 nM,
more preferably lower than or equal to 0.99 nM. In one preferred embodiment, said
second antigen-binding site binds domain III of ErbB-3 and has an affinity for ErbB-3
on SK-BR-3 cells that is lower than or equal to 2.0 nM, more preferably lower than
or equal to 1.5 nM, preferably lower than or equal to 1.39 nM, more preferably lower
than or equal to 0.99 nM. In one embodiment, said affinity is within the range of
1.39-0.59 nM. In one preferred embodiment, said second antigen-binding site binds
domain III of ErbB-3 and has an affinity for ErbB-3 on BT-474 cells that is lower
than or equal to 2.0 nM, more preferably lower than or equal to 1.5 nM, more preferably
lower than or equal to 1.0 nM, more preferably lower than or equal to 0.5 nM, more
preferably lower than or equal to 0.31 nM, more preferably lower than or equal to
0.23 nM. In one embodiment, said affinity is within the range of 0.31-0.15 nM.
[0058] Said first antigen-binding site preferably binds domain I of ErbB-2 and has an affinity
(KD) for an ErbB-2 positive cell that is lower than or equal to 5.0 nM, more preferably
lower than or equal to 4.5 nM, more preferably lower than or equal to 3.9 nM. In one
preferred embodiment, said first antigen-binding site binds domain I of ErbB-2 and
has an affinity for ErbB-2 on SK-BR-3 cells that is lower than or equal to 5.0 nM,
more preferably lower than or equal to 4.5 nM, more preferably lower than or equal
to 4.0 nM, more preferably lower than or equal to 3.5 nM, more preferably lower than
or equal to 3.0 nM, more preferably lower than or equal to 2.5 nM, more preferably
lower than or equal to 2.3 nM. In one embodiment, said affinity is within the range
of 3.0-1.6 nM. The affinity of said bispecific antibody for SK-BR-3 cells is preferably
lower than or equal to 5.0 nM, more preferably lower than or equal to 4.5 nM, more
preferably lower than or equal to 4.0 nM, more preferably lower than or equal to 3.5
nM, more preferably lower than or equal to 3.0 nM, more preferably lower than or equal
to 2.5 nM, more preferably lower than or equal to 2.4 nM, more preferably lower than
or equal to 2.0 nM. In one embodiment, said affinity is within the range of 2.4-1.6
nM.
[0059] In one preferred embodiment, said first antigen-binding site binds domain I of ErbB-2
and has an affinity (KD) for ErbB-2 on BT-474 cells that is lower than or equal to
5.0 nM, more preferably lower than or equal to 4.5 nM, preferably lower than or equal
to 3.9 nM. In one embodiment, said affinity is within the range of 4.5-3.3 nM. The
affinity of said bispecific antibody for BT-474 cells is preferably lower than or
equal to 5.0 nM, more preferably lower than or equal to 4.5 nM, more preferably lower
than or equal to 4.0 nM, more preferably lower than or equal to 3.7 nM, more preferably
lower than or equal to 3.2 nM. In one embodiment, said affinity is within the range
of 3.7-2.7 nM.
[0060] Again, the above-mentioned affinities are preferably as measured using steady state
cell affinity measurements, wherein cells are incubated at 4°C using radioactively
labeled antibody, where after cell-bound radioactivity is measured, as described in
the Examples.
[0061] Another preferred embodiment provides a bispecific antibody according to the invention
comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein the antibody can reduce a ligand-induced receptor
function of ErbB-3 on a ErbB-2 and ErbB-3 positive cell, wherein said bispecific antibody
does not significantly affect the survival of cardiomyocytes. Cardiotoxicity is a
known risk factor in ErbB-2 targeting therapies and the frequency of complications
is increased when trastuzumab is used in conjunction with anthracyclines thereby inducing
cardiac stress. For instance, the combination of doxycycline (DOX) with trastuzumab
induces severe cardiac side effects. Clinical studies have estimated that 5% to 10%
of patients who receive trastuzumab in the adjuvant setting of breast cancer develop
cardiac dysfunction (
Guarneri et al., J Clin Oncol., 1985, 3:818-26;
Ewer MS et al., Nat Rev Cardiol 2010;7:564-75). However, in a retrospective study, it was demonstrated that the risk for developing
asymptomatic cardiac dysfunction is actually as high as about 25% when trastuzumab
is used in the adjuvant setting with DOX (
Wadhwa et al., Breast Cancer Res Treat 2009;117:357-64). As shown in the Examples, the present invention provides antibodies that target
ErbB-2 and that do not, or to a significantly lesser extent as compared to trastuzumab
and pertuzumab, affect the survival of cardiomyocytes. This provides an important
advantage since cardiotoxicity is reduced. This is already advantageous for people
who do not suffer from an impaired cardiac function, and even more so for people who
do suffer from an impaired cardiac function, or who are at risk thereof, such as for
instance subjects suffering from congestive heart failure (CHF), left ventricular
dysfunction (LVD) and/or a ≥ 10% decreased Left Ventricular Ejection Fraction (LVEF),
and/or subjects who have had a myocardial infarction. Antibodies according to the
invention that do not significantly affect the survival of cardiomyocytes are, therefore,
preferred.
In vitro, the function of cardiomyocytes is for instance measured by determining the viability
of cardiomyocytes, by determining BNP (B-type natriuretic peptide, which is a cardiac
biomarker), by determining QT prolongation, and/or by determining mitochondrial membrane
potential.
[0062] Said antibody according to the invention comprises a first antigen-binding site that
binds domain I of ErbB-2 and a second antigen-binding site that binds domain III of
ErbB-3. One embodiment provides an antibody according to the invention that does not
significantly affect the survival of cardiomyocytes, comprising a first antigen-binding
site that binds ErbB-2 and a second antigen-binding site that binds ErbB-3, wherein
the affinity of said second antigen-binding site for an ErbB-3 positive cell is equal
to, or higher than, the affinity of said first antigen-binding site for an ErbB-2
positive cell. The affinity of said second antigen-binding site for an ErbB-3 positive
cell is preferably lower than or equal to 2.0 nM, more preferably lower than or equal
to 1.39 nM, more preferably lower than or equal to 0.99 nM. The affinity of said first
antigen-binding site for an ErbB-2 positive cell is preferably lower than or equal
to 5.0 nM, preferably lower than or equal to 4.5 nM preferably lower than or equal
to 4.0 nM.
[0063] In one preferred embodiment said antibody that does not significantly affect the
survival of cardiomyocytes comprises:
- at least the CDR3 sequence, preferably at least the CDR1, CDR2 and CDR3 sequences,
or at least the heavy chain variable region sequence, of an ErbB-2 specific heavy
chain variable region selected from the group consisting of MF2926, MF2973, MF3004,
MF3958, MF2971, MF3025, MF2916, MF3991, MF3031, and MF3003 as depicted in Figure 16A
or Figure 16E, or a heavy chain variable region sequence that differs in at most 15
amino acids, preferably in at most 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acids, more
preferably in at most 1, 2, 3, 4 or 5 amino acids, from the recited heavy chain variable
region sequences; and/or
- at least the CDR3 sequence, preferably at least the CDR1, CDR2 and CDR3 sequences,
or at least the heavy chain variable region sequence, of an ErbB-3 specific heavy
chain variable region selected from the group consisting of MF3178; MF3176; MF3163;
MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063;
MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 and
MF6074 as depicted in Figure 16B or Figure 16E or Figure 37, or a heavy chain variable
region sequence that differs in at most 15 amino acids, preferably in at most 1, 2,
3, 4, 5, 6, 7, 8, 9 or 10 amino acids, more preferably in at most 1, 2, 3, 4 or 5
amino acids, from the recited heavy chain variable region sequences. In one preferred
embodiment, said antibody is PB4188.
[0064] Another aspect of the present invention provides an antibody according to the invention,
comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein said antibody comprises an antigen-binding site that
binds at least one amino acid residue of domain I of ErbB-2 selected from the group
consisting of T144, T164, R166, P172, G179, S180 and R181, and surface-exposed amino
acid residues that are located within about 5 amino acid positions from T144, T164,
R166, P172, G179, S180 or R181. The amino acid residue numbering is that of Protein
Data Bank (PDB) ID #1S78. As shown in the Examples, antibodies binding this region
of domain I of ErbB-2 exhibit particularly good binding characteristics and they are
capable of counteracting the activity of ErbB-2 positive cells (such as ligand-induced
receptor function of ErbB-3 on a ErbB-2 and ErbB-3 positive cell, and/or ligand-induced
growth of such cell). Moreover, such antibodies are particularly suitable for combination
therapy with currently known anti-ErbB-2 monoclonal antibodies like trastuzumab (that
binds domain IV of ErbB-2) and pertuzumab (that binds domain II of ErbB-2) because
they bind different domains of ErbB-2. Hence, these antibodies can be used simultaneously
without competition for the same epitope. The term "surface-exposed amino acid residues
that are located within about 5 amino acid positions from T144, T164, R166, P172,
G179, S180 or R181" refers to amino acid residues that are in the primary amino acid
sequence located within about the first five amino acid residues adjacent to the recited
residues and that are at least in part exposed to the outside of the protein, so that
they can be bound by antibodies (see for instance Figure 21B). Preferably, said amino
acid residue located within about 5 amino acid positions from T144, T164, R166, P172,
G179, S180 or R181 is selected from the group consisting of L139, C140, Y141, Q142,
D143, 1145, L146, W147, K148, D149, L159, T160, L161, 1162, D163, N165, S167, R168,
A169, C170, H171, C173, S174, P175, M176, C177, K178, C182, W183, G184, E185 and S186.
Preferably, said antibody comprises an antigen-binding site that binds at least 2
or at least 3 amino acid residues of domain I of ErbB-2 selected from the group consisting
of T144, T164, R166, P172, G179, S180 and R181, and surface-exposed amino acid residues
that are located within 5 amino acid positions from T144, T164, R166, P172, G179,
S180 or R181.
[0065] In one preferred embodiment, a bispecific antibody according to the invention is
provided, wherein said antibody comprises an antigen-binding site that binds at least
T144, R166 and R181 of domain I of ErbB-2. Another embodiment provides a bispecific
antibody according to the invention, wherein said antibody comprises an antigen-binding
site that binds at least T144, R166, P172, G179 and R181 of domain I of ErbB-2. Another
embodiment provides a bispecific antibody according to the invention, wherein said
antibody comprises an antigen-binding site that binds at least T144, T164, R166, P172,
G179, S180 and R181 of domain I of ErbB-2.
[0066] Another aspect of the present invention provides an antibody according to the invention
comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein said antibody comprises an antigen-binding site that
binds at least one amino acid of domain III of ErbB-3 selected from the group consisting
R426 and surface-exposed amino acid residues that are located within 11.2 Å from R426
in the native ErbB-3 protein. The amino acid residue numbering is that of Protein
Data Bank (PDB) ID #4P59. As shown in the Examples, antibodies binding this region
of domain III of ErbB-3 exhibit particularly good binding characteristics and they
are capable of counteracting the activity of ErbB-3 positive cells (such as ligand-induced
receptor function of ErbB-3 on a ErbB-2 and ErbB-3 positive cell, and/or ligand-induced
growth of such cell). The term "surface-exposed amino acid residues that are located
within 11.2 Å from R426 in the native ErbB-3 protein" refers to amino acid residues
that are in the tertiary structure of the ErbB-3 protein spationally positioned within
11.2 Å from R426 and that are at least in part exposed to the outside of the protein,
so that they can be bound by antibodies. Preferably, said amino acid residues that
are located within 11.2 Å from R426 in the native ErbB-3 protein are selected from
the group consisting of L423, Y424, N425, G427, G452, R453, Y455, E480, R481, L482,
D483 and K485 (see for instance Figure 21C and Table 15). In one preferred embodiment,
a bispecific antibody according to the invention is provided, wherein said antibody
comprises an antigen-binding site that binds at least R426 of domain III of ErbB-3.
Preferably, said antibody comprises an antigen-binding site that binds at least R426
of domain III of ErbB-3.
[0067] A bispecific antibody of the invention is preferably afucosylated in order to enhance
ADCC activity. A bispecific antibody of the invention preferably comprises a reduced
amount of fucosylation of the N-linked carbohydrate structure in the Fc region, when
compared to the same antibody produced in a normal CHO cell.
[0068] A bispecific antibody of the present invention is preferably used in humans. To this
end a bispecific antibody of the invention is preferably a human or humanized antibody.
Tolerance of a human to a polypeptide is governed by many different aspects. Immunity,
be it T-cell mediated, B-cell mediated or other is one of the variables that are encompassed
in tolerance of the human for a polypeptide. The constant region of a bispecific antibody
of the present invention is preferably a human constant region. The constant region
may contain one or more, preferably not more than 10, preferably not more than 5 amino-acid
differences with the constant region of a naturally occurring human antibody. It is
preferred that the constant part is entirely derived from a naturally occurring human
antibody. Various antibodies produced herein are derived from a human antibody variable
domain library. As such these variable domains are human. The unique CDR regions may
be derived from humans, be synthetic or derived from another organism. The variable
region is considered a human variable region when it has an amino acid sequence that
is identical to an amino acid sequence of the variable region of a naturally occurring
human antibody, but for the CDR region. The variable region of an ErbB-2 binding VH,
an ErbB-3 binding VH, or a light chain in an antibody of the invention may contain
one or more, preferably not more than 10, preferably not more than 5 amino-acid differences
with the variable region of a naturally occurring human antibody, not counting possible
differences in the amino acid sequence of the CDR regions. Such mutations occur also
in nature in the context of somatic hypermutation.
[0069] Antibodies may be derived from various animal species, at least with regard to the
heavy chain variable region. It is common practice to humanize such e.g. murine heavy
chain variable regions. There are various ways in which this can be achieved among
which there are CDR-grafting into a human heavy chain variable region with a 3D-structure
that matches the 3-D structure of the murine heavy chain variable region; deimmunization
of the murine heavy chain variable region, preferably done by removing known or suspected
T- or B- cell epitopes from the murine heavy chain variable region. The removal is
typically by substituting one or more of the amino acids in the epitope for another
(typically conservative) amino acid, such that the sequence of the epitope is modified
such that it is no longer a Tor B-cell epitope.
Such deimmunized murine heavy chain variable regions are less immunogenic in humans
than the original murine heavy chain variable region. Preferably a variable region
or domain of the invention is further humanized, such as for instance veneered. By
using veneering techniques, exterior residues which are readily encountered by the
immune system are selectively replaced with human residues to provide a hybrid molecule
that comprises either a weakly immunogenic or substantially non-immunogenic veneered
surface. An animal as used in the invention is preferably a mammal, more preferably
a primate, most preferably a human.
[0070] A bispecific antibody according to the invention preferably comprises a constant
region of a human antibody. According to differences in their heavy chain constant
domains, antibodies are grouped into five classes, or isotypes: IgG, IgA, IgM, IgD,
and IgE. These classes or isotypes comprise at least one of said heavy chains that
is named with a corresponding Greek letter. In a preferred embodiment the invention
provides an antibody according to the invention wherein said constant region is selected
from the group of IgG, IgA, IgM, IgD, and IgE constant regions, more preferably said
constant region comprises an IgG constant region, more preferably an IgG1 constant
region, preferably a mutated IgG1 constant region. Some variation in the constant
region of IgG1 occurs in nature, such as for instance the allotypes G1m1, 17 and G1m3,
and/or is allowed without changing the immunological properties of the resulting antibody.
Typically between about 1-10 amino acid insertions, deletions, substitutions or a
combination thereof are allowed in the constant region.
[0071] The invention in one embodiment provides an antibody according to the invention comprising
a variable domain that binds ErbB-2, wherein said antibody comprises at least the
CDR3 sequence of an ErbB-2 specific heavy chain variable region selected from the
group consisting of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025, MF2916, MF3991,
MF3031, and MF3003 as depicted in Figure 16A or Figure 16E, or wherein said antibody
comprises a heavy chain CDR3 sequence that differs in at most three, preferably in
at most two, preferably in no more than one amino acid from a CDR3 sequence of a VH
selected from the group consisting of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025,
MF2916, MF3991, MF3031, and MF3003 as depicted in Figure 16A or Figure 16E. Said antibody
preferably comprises at least the CDR3 sequence of MF2971, MF3958, MF3004 or MF3991,
most preferably at least the CDR3 sequence of MF3958.
[0072] Said antibody preferably comprises at least the CDR1, CDR2 and CDR3 sequences of
an ErbB-2 specific heavy chain variable region selected from the group consisting
of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025, MF2916, MF3991, MF3031, and MF3003
as depicted in Figure 16A or Figure 16E, or heavy chain CDR1, CDR2 and CDR3 sequences
that differ in at most three, preferably in at most two, preferably in at most one
amino acid from the CDR1, CDR2 and CDR3 sequences of MF2926, MF2973, MF3004, MF3958,
MF2971, MF3025, MF2916, MF3991, MF3031, or MF3003. Said antibody preferably comprises
at least the CDR1, CDR2 and CDR3 sequences of MF2971, MF3958, MF3004 or MF3991, most
preferably at least the CDR1, CDR2 and CDR3 sequences of MF3958.
[0073] The invention also provides an antibody according to the invention comprising a variable
domain that binds ErbB-3, wherein said antibody comprises at least the CDR3 sequence
of an ErbB-3 specific heavy chain variable region selected from the group consisting
of MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059;
MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070;
MF6071; MF6072; MF6073 and MF6074 as depicted in Figure 16B or Figure 16E or Figure
37, or wherein said antibody comprises a heavy chain CDR3 sequence that differs in
at most three, preferably in at most two, preferably in no more than one amino acid
from a CDR3 sequence of a VH selected from the group consisting of MF3178; MF3176;
MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062;
MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073
and MF6074 as depicted in Figure 16B or Figure 16E or Figure 37. Said antibody preferably
comprises at least the CDR3 sequence of MF3178, MF3176, MF3163, MF6058, MF6061 or
MF6065, most preferably at least the CDR3 sequence of MF3178.
[0074] Said antibody preferably comprises at least the CDR1, CDR2 and CDR3 sequences of
an ErbB-3 specific heavy chain variable region selected from the group consisting
of MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059;
MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070;
MF6071; MF6072; MF6073 and MF6074 as depicted in Figure 16B or Figure 16E or Figure
37, or heavy chain CDR1, CDR2 and CDR3 sequences that differ in at most three, preferably
in at most two, preferably in at most one amino acid from the CDR1, CDR2 and CDR3
sequences of MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058;
MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069;
MF6070; MF6071; MF6072; MF6073 or MF6074. Said antibody preferably comprises at least
the CDR1, CDR2 and CDR3 sequences of MF3178, MF3176, MF3163, MF6058, MF6061 or MF6065,
most preferably at least the CDR1, CDR2 and CDR3 sequence of MF3178.
[0075] The invention in one embodiment provides a bispecific antibody according to the invention
comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein said first antigen-binding site comprises at least
the CDR3 sequence of an ErbB-2 specific heavy chain variable region selected from
the group consisting of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025, MF2916, MF3991,
MF3031, and MF3003 as depicted in Figure 16A or Figure 16E, or a heavy chain CDR3
sequence that differs in at most three, preferably in at most two, preferably in no
more than one amino acid from a CDR3 sequence of a VH selected from the group consisting
of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025, MF2916, MF3991, MF3031, and MF3003
as depicted in Figure 16A or Figure 16E, and wherein said second antigen-binding site
comprises at least the CDR3 sequence of an ErbB-3 specific heavy chain variable region
selected from the group consisting of MF3178; MF3176; MF3163; MF3099; MF3307; MF6055;
MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066;
MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 and MF6074 as depicted in Figure
16B or Figure 16E or Figure 37, or a heavy chain CDR3 sequence that differs in at
most three, preferably in at most two, preferably in no more than one amino acid from
a CDR3 sequence of a VH selected from the group consisting of MF3178; MF3176; MF3163;
MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063;
MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 and
MF6074 as depicted in Figure 16B or Figure 16E or Figure 37. Said first antigen-binding
site preferably comprises at least the CDR3 sequence of MF2971, MF3958, MF3004 or
MF3991, most preferably at least the CDR3 sequence of MF3958 and said second antigen-binding
site preferably comprises at least the CDR3 sequence of MF3178, MF3176, MF3163, MF6058,
MF6061 or MF6065, most preferably at least the CDR3 sequence of MF3178.
[0076] Said first antigen-binding site preferably comprises at least the CDR1, CDR2 and
CDR3 sequences of an ErbB-2 specific heavy chain variable region selected from the
group consisting of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025, MF2916, MF3991,
MF3031, and MF3003 as depicted in Figure 16A or Figure 16E, or heavy chain CDR1, CDR2
and CDR3 sequences that differ in at most three, preferably in at most two, preferably
in at most one amino acid from the CDR1, CDR2 and CDR3 sequences of MF2926,MF2973,
MF3004, MF3958, MF2971, MF3025, MF2916, MF3991, MF3031, or MF3003, and said second
antigen-binding site preferably comprises at least the CDR1, CDR2 and CDR3 sequences
of an ErbB-3 specific heavy chain variable region selected from the group consisting
of MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059;
MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070;
MF6071; MF6072; MF6073 and MF6074 as depicted in Figure 16B or Figure 16E or Figure
37, or heavy chain CDR1, CDR2 and CDR3 sequences that differ in at most three, preferably
in at most two, preferably in at most one amino acid from the CDR1, CDR2 and CDR3
sequences of MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058;
MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069;
MF6070; MF6071; MF6072; MF6073 or MF6074 as depicted in Figure 16B or Figure 16E or
Figure 37. Said first antigen-binding site preferably comprises at least the CDR1,
CDR2 and CDR3 sequences of MF2971, MF3958, MF3004 or MF3991, most preferably at least
the CDR1, CDR2 and CDR3 sequences of MF3958, and said second antigen-binding site
preferably comprises at least the CDR1, CDR2 and CDR3 sequences of MF3178, MF3176,
MF3163, MF6058, MF6061 or MF6065, most preferably at least the CDR1, CDR2 and CDR3
sequence of MF3178.
[0077] One preferred embodiment provides a bispecific antibody according to the invention
comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein said first antigen-binding site comprises at least
the CDR3 sequence of MF3958, or a CDR3 sequence that differs in at most three, preferably
in at most two, preferably in no more than one amino acid from the CDR3 sequence of
MF3958, and wherein said second antigen-binding site comprises at least the CDR3 sequence
of MF3178, or a CDR3 sequence that differs in at most three, preferably in at most
two, preferably in no more than one amino acid from the CDR3 sequence of MF3178.
[0078] The invention in one embodiment provides a bispecific antibody according to the invention
comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein said first antigen-binding site comprises at least
the CDR1, CDR2 and CDR3 sequences of MF3958, or CDR1, CDR2 and CDR3 sequences that
differ in at most three, preferably in at most two, preferably in at most one amino
acid from the CDR1, CDR2 and CDR3 sequences of MF3958, and wherein said second antigen-binding
site comprises at least the CDR1, CDR2 and CDR3 sequence of MF3178, or CDR1, CDR2
and CDR3 sequences that differ in at most three, preferably in at most two, preferably
in at most one amino acid from the CDR1, CDR2 and CDR3 sequences of MF3178.
[0079] The invention in one embodiment provides a bispecific antibody according to the invention
comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein said first antigen-binding site comprises at least
the CDR3 sequence of MF3958 and wherein said second antigen-binding site comprises
at least the CDR3 sequence of MF3178.
[0080] The invention in one embodiment provides a bispecific antibody according to the invention
comprising a first antigen-binding site that binds ErbB-2 and a second antigen-binding
site that binds ErbB-3, wherein said first antigen-binding site comprises at least
the CDR1, CDR2 and CDR3 sequences of MF3958 and wherein said second antigen-binding
site comprises at least the CDR1, CDR2 and CDR3 sequence of MF3178.
[0081] CDR sequences are for instance varied for optimization purposes, preferably in order
to improve binding efficacy or the stability of the antibody. Optimization is for
instance performed by mutagenesis procedures where after the stability and/or binding
affinity of the resulting antibodies are preferably tested and an improved ErbB-2
or ErbB-3 -specific CDR sequence is preferably selected. A skilled person is well
capable of generating antibody variants comprising at least one altered CDR sequence
according to the invention. For instance, conservative amino acid substitution is
applied. Examples of conservative amino acid substitution include the substitution
of one hydrophobic residue such as isoleucine, valine, leucine or methionine for another
hydrophobic residue, and the substitution of one polar residue for another polar residue,
such as the substitution of arginine for lysine, glutamic acid for aspartic acid,
or glutamine for asparagine.
[0082] The invention in one embodiment provides an antibody according to the invention comprising
a variable domain that binds ErbB-2, wherein the VH chain of said variable domain
comprises the amino acid sequence of VH chain MF2926; MF2973; MF3004; MF3958 (is humanized
MF2971); MF2971; MF3025; MF2916; MF3991 (is humanized MF3004); MF3031;or MF3003 as
depicted in Figure 16A or Figure 16E; or comprises the amino acid sequence of VH chain
MF2926; MF2973; MF3004; MF3958 (is humanized MF2971); MF2971; MF3025; MF2916; MF3991
(is humanized MF3004); MF3031; or MF3003 as depicted in Figure 16A or Figure 16E having
at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 more preferably at most 1,
2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination thereof
with respect to the above mentioned VH chain sequence of Figure 16A or Figure 16E.
The VH chain of the variable domain that binds ErbB-2 preferably comprises the amino
acid sequence of:
- MF2971 or a humanized version thereof, wherein said humanized version preferably comprises
the amino acid sequence of MF3958; or
- MF3004 or a humanized version thereof, wherein said humanized version preferably comprises
the amino acid sequence of MF3991;
as depicted in Figure 16A. In one embodiment, the VH chain of the variable domain
that binds ErbB-2 comprises the amino acid sequence of VH chain MF2971 or a humanized
version thereof, wherein said humanized version preferably comprises the amino acid
sequence of MF3958; or MF3004 or a humanized version thereof, wherein said humanized
version preferably comprises the amino acid sequence of MF3991, wherein the recited
VH sequences have at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably
at most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to the respective sequence depicted in Figure 16A. In a preferred
embodiment the VH chain of the variable domain that binds ErbB-2 comprises the amino
acid sequence of MF3958; or comprises the amino acid sequence of MF3958 depicted in
figure 16A having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably
at most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to the VH chain sequence. The antibody comprising a variable
domain that binds ErbB-2 is a bispecific antibody that further comprises a variable
domain that binds ErbB-3. The VH chain of the variable domain that binds Erb-B3 preferably
comprises the amino acid sequence of VH chain MF3178; MF3176; MF3163; MF3099; MF3307;
MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF
6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 or MF6074 as
depicted in Figure 16B or Figure 16E or Figure 37; or comprises the amino acid sequence
of VH chain MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058;
MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069;
MF6070; MF6071; MF6072; MF6073 or MF6074 as depicted in Figure 16B or Figure 16E or
Figure 37 having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably
at most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to the VH chain sequence of Figure 16B or Figure 16E or Figure
37. The VH chain of the variable domain that binds Erb-B3 preferably comprises the
amino acid sequence of MF3178, MF3176, MF3163, MF6058, MF6061 or MF6065; or comprises
the amino acid sequence of MF3178, MF3176, MF3163, MF6058, MF6061 or MF6065 having
at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably in at most
1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to the respective VH chain sequence of Figure 16B or Figure 37.
In a preferred embodiment the VH chain of the variable domain that binds ErbB-3 comprises
the amino acid sequence of MF3178; or comprises the amino acid sequence of MF3178
depicted in Figure 16B having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or
10, more preferably at most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions
or a combination thereof with respect to the VH chain sequence. Preferably, the above-mentioned
amino acid insertions, deletions and substitutions are not present in the CDR3 region.
The above-mentioned amino acid insertions, deletions and substitutions are also preferably
not present in the CDR1 and CDR2 regions. The above-mentioned amino acid insertions,
deletions and substitutions are also preferably not present in the FR4 region.
[0083] The invention further provides an antibody according to the invention comprising
a variable domain that binds ErbB-3, wherein the VH chain of said variable region
comprises the amino acid sequence of VH chain MF3178; MF3176; MF3163; MF3099; MF3307;
MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF
6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 or MF6074 as
depicted in Figure 16B or Figure 16E or Figure 37, or comprises the amino acid sequence
of VH chain MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058;
MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069;
MF6070; MF6071; MF6072; MF6073 or MF6074 as depicted in Figure 16B or Figure 16E or
Figure 37 having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably
at most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to said VH chain sequence. The VH chain of the variable domain
that binds ErbB3 preferably comprises the amino acid sequence of VH chain MF3178,
MF3176, MF3163, MF6058, MF6061 or MF6065; or comprises the amino acid sequence of
VH chain MF3178, MF3176, MF3163, MF6058, MF6061 or MF6065 having at most 15, preferably
1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at most 1, 2, 3, 4 or 5, amino acid
insertions, deletions, substitutions or a combination thereof with respect to said
VH chain sequence. In a preferred embodiment the VH chain of the variable domain that
binds ErbB-3 comprises the amino acid sequence of VH chain MF3178 depicted in Figure
16B; or comprises the amino acid sequence of VH chain MF3178 depicted in Figure 16B
having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at
most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to the VH chain sequence. The antibody comprising a variable
domain that binds ErbB-3, is a bispecific antibody that further comprises a variable
domain that binds ErbB-2. The VH chain of the variable domain that binds ErbB-2 preferably
comprises the amino acid sequence of a VH chain of Figure 16A or Figure 16E. The VH
chain of the variable domain that binds ErbB-2 preferably comprises the amino acid
sequence of MF2971 or a humanized version thereof, wherein said humanized version
preferably comprises the amino acid sequence of MF3958; or MF3004 or a humanized version
thereof, wherein said humanized version preferably comprises the amino acid sequence
of MF3991 as depicted in Figure 16A. In one embodiment, the recited Erb-B2 binding
VH sequences have at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably
at most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to the respective sequence depicted in Figure 16A. In one preferred
embodiment, said ErbB-2 binding VH chain of Figure 16A comprises the amino acid sequence
of MF3958; or comprises the amino acid sequence of MF3958 having at most 15, preferably
1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at most 1, 2, 3, 4 or 5, amino acid
insertions, deletions, substitutions or a combination thereof with respect to the
VH chain sequence. Preferably, the above-mentioned amino acid insertions, deletions
and substitutions are not present in the CDR3 region. The above-mentioned amino acid
insertions, deletions and substitutions are also preferably not present in the CDR1
and CDR2 regions. The above-mentioned amino acid insertions, deletions and substitutions
are also preferably not present in the FR4 region.
[0084] Further provided is an antibody according to the invention, wherein said antibody
comprises an ErbB-2 specific heavy chain variable region sequence selected from the
group consisting of the heavy chain variable region sequences of MF2926, MF2973, MF3004,
MF3958, MF2971, MF3025, MF2916, MF3991, MF3031, and MF3003 as depicted in Figure 16A
or Figure 16E, or wherein said antibody comprises a heavy chain variable region sequence
that differs in at most 15, preferably in 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably
in at most 1, 2, 3, 4 or 5, amino acids from the heavy chain variable region sequences
of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025, MF2916, MF3991, MF3031, or MF3003.
[0085] Further provided is an antibody according to the invention, wherein said antibody
comprises an ErbB-3 specific heavy chain variable region sequence selected from the
group consisting of the heavy chain variable region sequences of MF3178; MF3176; MF3163;
MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063;
MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 and
MF6074 as depicted in Figure 16B or Figure 16E or Figure 37, or wherein said antibody
comprises a heavy chain variable region sequence that differs in at most 15, preferably
in 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably in at most 1, 2, 3, 4 or 5, amino
acids from the heavy chain variable region sequences of MF3178; MF3176; MF3163; MF3099;
MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064;
MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 or MF6074.
[0086] Also disclosed is an antibody comprising two antigen-binding sites that bind ErbB-2,
wherein at least one of said antigen-binding sites binds domain I of ErbB-2. Preferably,
both antigen-binding sites bind domain I of ErbB-2. Such antibody is particularly
suitable for combination therapy with currently used anti- ErbB-2 binding molecules
that do not bind domain I of ErbB-2, such as trastuzumab that binds domain IV of ErbB-2
and pertuzumab that binds domain II of ErbB-2, because then the different binding
molecules do not compete with each other for the same epitope.
[0087] Further disclosed is an antibody comprising two antigen-binding sites that bind ErbB-2,
wherein at least one of said antigen-binding sites binds domain I of ErbB-2 and wherein
the affinity (KD) of said at least one antigen-binding site for an ErbB-2 positive
cell is lower than or equal to 5.0 nM, preferably lower than or equal to 4.5 nM, more
preferably lower than or equal to 3.9 nM. Preferably, both antigen-binding sites bind
domain I of ErbB-2. Preferably, the affinity of said at least one antigen-binding
site for ErbB-2 on SK-BR-3 cells is lower than or equal to 5.0 nM, preferably lower
than or equal to 4.5 nM, more preferably lower than or equal to 4.0 nM, more preferably
lower than or equal to 3.5 nM, more preferably lower than or equal to 3.0 nM, more
preferably lower than or equal to 2.3 nM. In one aspect, said affinity is within the
range of 3.0-1.6 nM. Preferably, the affinity of said at least one antigen-binding
site for ErbB-2 on BT-474 cells is lower than or equal to 5.0 nM, preferably lower
than or equal to 4.5 nM, more preferably lower than or equal to 3.9 nM. In one aspect,
said affinity is within the range of 4.5-3.3 nM.
[0088] The above-mentioned affinities are preferably as measured using steady state cell
affinity measurements, wherein cells are incubated at 4°C using radioactively labeled
antibody, where after cell-bound radioactivity is measured, as described in the Examples.
[0089] Further disclosed is an antibody comprising two variable domains that bind ErbB-2,
wherein a VH chain of said variable domains comprises the amino acid sequence of the
VH chain MF2926; MF2930; MF1849; MF2973; MF3004; MF3958 (is humanized MF2971); MF2971;
MF3025; MF2916; MF3991 (is humanized MF3004); MF3031; MF2889; MF2913; MF1847; MF3001,
MF3003 or MF1898 as depicted in Figure 16A or Figure 16E; or the amino acid sequence
of the VH chain MF2926; MF2930; MF1849; MF2973; MF3004; MF3958 (is humanized MF2971);
MF2971; MF3025; MF2916; MF3991 (is humanized MF3004); MF3031; MF2889; MF2913; MF1847;
MF3001, MF3003 or MF1898 VH-chains as depicted in Figure 16A or Figure 16E, having
at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at most 1,
2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination thereof
with respect to the respective sequence depicted in Figure 16A or Figure 16E. Said
VH preferably comprises the amino acid sequence of VH chain MF1849; or MF2971 or a
humanized version thereof, wherein said humanized version preferably comprises the
amino acid sequence of MF3958; or MF3004 or a humanized version thereof, wherein said
humanized version preferably comprises the amino acid sequence of MF3991 as depicted
in Figure 16A; or comprises the amino acid sequence of VH chain MF1849; or MF2971
or a humanized version thereof, wherein said humanized version preferably comprises
the amino acid sequence of MF3958; or MF3004 or a humanized version thereof, wherein
said humanized version preferably comprises the amino acid sequence of MF3991 as depicted
in Figure 16A having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more
preferably at most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions
or a combination thereof with respect to the respective sequence depicted in Figure
16A. The variable domains of the antibody preferably comprise identical VH chains,
preferably having a sequence as depicted in Figure 16A or Figure 16E. An antibody
with variable domains with identical VH chains is not a bispecific antibody. VH chains
are identical for the present invention if they comprise the same VH chain sequence
as depicted in Figure 16A or Figure 16E or Figure 37, or the same VH chain sequence
but for 1, 2, 3, 4 or 5 amino acid insertions, deletions, substitutions or a combination
thereof with respect to the respective sequence depicted in Figure 16A or Figure 16E
or Figure 37.
[0090] Further disclosed is an antibody comprising two antigen-binding sites that bind ErbB-3,
wherein at least one of said antigen-binding sites binds domain III of ErbB-3. Preferably,
both antigen-binding sites bind domain III of ErbB-3. Such antibody is particularly
suitable for combination therapy with currently used anti-ErbB-3 binding molecules
that do not bind domain III of ErbB-3, such as MM-121 (#Ab6) and RG7116 that bind
domain I of ErbB-3, because then the different binding molecules do not compete with
each other for the same epitope.
[0091] Further disclosed is an antibody comprising two antigen-binding sites that bind ErbB-3,
wherein at least one of said antigen-binding sites binds domain III of ErbB-3 and
wherein the affinity (KD) of said at least one antigen-binding site for an ErbB-3
positive cell is lower than or equal to 2.0 nM, preferably lower than or equal to
1.5 nM, more preferably lower than or equal to 1.39 nM, more preferably lower than
or equal to 0.99 nM. Preferably, both antigen-binding sites bind domain III of ErbB-3.
Preferably, the affinity of said at least one antigen-binding site for ErbB-3 on SK-BR-3
cells is lower than or equal to 2.0 nM, preferably lower than or equal to 1.5 nM,
more preferably lower than or equal to 1.39 nM, more preferably lower than or equal
to 0.99 nM. In one aspect, said affinity is within the range of 1.39-0.59 nM. Preferably,
the affinity of said at least one antigen-binding site for ErbB-3 on BT-474 cells
is lower than or equal to 2.0 nM, more preferably lower than or equal to 1.5 nM, more
preferably lower than or equal to 1.0 nM, more preferably lower than or equal to 0.5
nM, more preferably lower than or equal to 0.31 nM, more preferably lower than or
equal to 0.23 nM. In one aspect, said affinity is within the range of 0.31-0.15 nM.
[0092] Again, the above-mentioned affinities are preferably as measured using steady state
cell affinity measurements, wherein cells are incubated at 4°C using radioactively
labeled antibody, where after cell-bound radioactivity is measured, as described in
the Examples.
[0093] Further disclosed is an antibody comprising two variable domains that each bind ErbB3
wherein a VH of the variable domains comprises the amino acid sequence of VH chain
MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060;
MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071;
MF6072; MF6073 or MF6074 as depicted in Figure 16B or Figure 16E or Figure 37; or
comprises the amino acid sequence of VH chain MF3178; MF3176; MF3163; MF3099; MF3307;
MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF
6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 or MF6074 having
at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at most 1,
2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination thereof
with respect to any of said VH chain sequences. Said VH preferably comprises the amino
acid sequence of VH chain MF3178, MF3176, MF3163, MF6058, MF6061 or MF6065; or comprises
the amino acid sequence of VH chain MF3178, MF3176, MF3163, MF6058, MF6061 or MF6065
having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at
most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to any of said VH chain sequences. Said VH preferably comprises
the amino acid sequence of VH chain MF3178; or comprises the amino acid sequence of
VH chain MF3178 depicted in Figure 16B having at most 15, preferably 1, 2, 3, 4, 5,
6, 7, 8, 9 or 10, more preferably at most 1, 2, 3, 4 or 5, amino acid insertions,
deletions, substitutions or a combination thereof with respect to the MF3178 VH chain
sequence. The variable domains of the antibody preferably comprise identical VH chains,
preferably having a sequence as depicted in Figure 16B or Figure 16E or Figure 37.
An antibody with variable domains with identical VH chains is not a bispecific antibody.
The VH chains are identical if they comprise the same VH chain sequence as depicted
in Figure 16B or Figure 16E or Figure 37, or the same VH chain sequence but for 1,
2, 3, 4 or 5 amino acid insertions, deletions, substitutions or a combination thereof
with respect to the VH chain sequence of Figure 16B or Figure 16E or Figure 37.
[0094] Monospecific antibodies that are specific for ErbB-3 have the advantage that they
have a better functional activity against ErbB-3, as compared to prior art compounds
such as for instance MM-121 (#Ab6), meaning that these antibodies are better capable
of counteracting ErbB-3 activity (such as a ligand-induced receptor function of ErbB-3
and/or ligand-induced growth of an ErbB-2 and ErbB-3 positive cell). This is for instance
shown in Table 7 and Figure 38.
[0095] In a preferred embodiment the invention provides a bispecific antibody according
to the invention comprising a variable domain that binds ErbB-2, wherein the VH chain
of said variable domain comprises
- the amino acid sequence of VH chain MF2971 or a humanized version thereof, wherein
said humanized version preferably comprises the amino acid sequence of MF3958; or
MF3004 or a humanized version thereof, wherein said humanized version preferably comprises
the amino acid sequence of MF3991, as depicted in Figure 16A; or comprises
- the amino acid sequence of VH chain MF2971 or a humanized version thereof, wherein
said humanized version preferably comprises the amino acid sequence of MF3958; or
MF3004 or a humanized version thereof, wherein said humanized version preferably comprises
the amino acid sequence of MF3991, as depicted in Figure 16A having at most 15, preferably
1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at most 1, 2, 3, 4 or 5, amino acid
insertions, deletions, substitutions or a combination thereof with respect to said
VH. Such bispecific antibody according to this embodiment further comprises a variable
domain that binds ErbB-3. The VH chain of the variable domain that binds ErbB-3 preferably
comprises the amino acid sequence of VH chain MF3178; MF3176; MF3163; MF3099; MF3307;
MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF
6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 or MF6074 as
depicted in Figure 16B or Figure 16E or Figure 37, or most preferably comprises the
amino acid sequence of VH chain MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056;
MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067;
MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 or MF6074 as depicted in Figure 16B
or Figure 16E or Figure 37, having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8,
9 or 10, more preferably at most 1, 2, 3, 4 or 5, amino acid insertions, deletions,
substitutions or a combination thereof with respect to any of said VH chain sequences
of Figure 16B or Figure 16E or Figure 37. The VH chain of the variable domain that
binds ErbB-3 preferably comprises the amino acid sequence of VH chain MF3178 as depicted
in Figure 16B or comprises the amino acid sequence of VH chain MF3178 depicted in
Figure 16B having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably
at most 1, 2, 3, 4 or 5, amino acid insertions, deletions, substitutions or a combination
thereof with respect to the VH chain sequence of Figure 16B.
[0096] The invention preferably provides a bispecific antibody according to the invention
comprising a variable domain that binds ErbB-2 and a variable domain that binds ErbB-3,
wherein the VH chain of the variable domain that binds ErbB-2 comprises
- the amino acid sequence of VH chain MF3958 as depicted in Figure 16A; or
- the amino acid sequence of VH chain MF3958 as depicted in Figure 16A having at most
15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at most 1, 2, 3, 4
or 5, amino acid insertions, deletions, substitutions or a combination thereof with
respect said VH; and
wherein the VH chain of the variable domain that binds ErbB-3 comprises
- the amino acid sequence of VH chain MF3178 as depicted in Figure 16B; or
- the amino acid sequence of VH chain MF3178 depicted in Figure 16B having at most 15,
preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 more preferably at most 1, 2, 3, 4 or 5,
amino acid insertions, deletions, substitutions or a combination thereof with respect
to the VH chain sequence of Figure 16B.
[0097] The invention preferably provides a bispecific antibody according to the invention
comprising a variable domain that binds ErbB-2 and a variable domain that binds ErbB-3,
wherein the VH chain of the variable domain that binds ErbB-2 comprises
- the amino acid sequence of VH chain MF3991 as depicted in Figure 16A; or
- the amino acid sequence of VH chain MF3991 as depicted in Figure 16A having at most
15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at most 1, 2, 3, 4
or 5, amino acid insertions, deletions, substitutions or a combination thereof with
respect said VH; and
wherein the VH chain of the variable domain that binds ErbB-3 comprises
- the amino acid sequence of VH chain MF3178 as depicted in Figure 16B; or
- the amino acid sequence of VH chain MF3178 depicted in Figure 16B having at most 15,
preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10, more preferably at most 1, 2, 3, 4 or
5, amino acid insertions, deletions, substitutions or a combination thereof with respect
to the VH chain sequence of Figure 16B.
[0098] When compared to the sequence in Figure 16, the behavior of a VH chain typically
starts to become noticeably different when it has more than 15 amino acid changes
with respect to the amino acid sequence of a VH chain as depicted in Figure 16. A
VH chain having at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acid
insertions, deletions, substitutions or a combination thereof with respect to the
VH chain depicted in Figure 16, preferably has 1, 2, 3, 4 or 5 amino acid insertions,
deletions, substitutions or a combination thereof with respect to the VH chain depicted
in Figure 16, preferably 1, 2, 3 or 4 insertions, deletions, substitutions or a combination
thereof, preferably 1, 2 or 3 insertions, deletions, substitutions or a combination
thereof, more preferably 1 or 2 insertions, deletions, substitutions or a combination
thereof, and preferably 1 insertion, deletion, substitution or a combination thereof
with respect to the VH chain depicted in Figure 16. The one or more amino acid insertions,
deletions, substitutions or a combination thereof are preferably not in the CDR1,
CDR2 and CDR3 region of the VH chain. They are also preferably not present in the
FR4 region. An amino acid substitution is preferably a conservative amino acid substitution.
[0099] In a preferred embodiment the invention provides a bispecific antibody according
to the invention comprising an amino acid sequence as depicted in Figure 16D, or a
bispecific antibody of Figure 16D having at most 15, preferably 1, 2, 3, 4, 5, 6,
7, 8, 9 or 10, more preferably at most 1, 2, 3, 4 or 5, amino acid insertions, deletions,
substitutions or a combination thereof with respect to the sequence of Figure 16D,
wherein the at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acid substitutions
are preferably conservative amino acid substitutions. The insertions, deletions, substitutions
or a combination thereof are preferably not in the CDR3 region of the VH chain, preferably
not in the CDR1, CDR2 and CDR3 region of the VH chain, and preferably not in the FR4
region.
[0100] Rational methods have evolved toward minimizing the content of non-human residues
in the human context. Various methods are available to successfully graft the antigen-binding
property of a bispecific antibody onto another antibody. The binding properties of
antibodies rest predominantly in the exact sequence of the CDR3 region, often supported
by the sequence of the CDR1 and CDR2 regions in the variable domain combined with
the appropriate structure of the variable domain as a whole. Various methods are presently
available to graft CDR regions onto a suitable variable domain of another antibody.
Some of these methods are reviewed in
J.C. Almagro1 and J. Fransson (2008) Frontiers in Bioscience 13, 1619-1633. The invention therefore further provides a human or humanized bispecific antibody
according to the invention comprising a first antigen-binding site that binds ErbB-2
and a second antigen-binding site that binds ErbB-3, wherein the variable domain comprising
the ErbB-2 binding site comprises a VH CDR3 sequence as depicted in Figure 16A or
Figure 16E, and wherein the variable domain comprising the ErbB-3 binding site comprises
a VH CDR3 region as depicted in Figure 16B or Figure 16E or Figure 37. The VH variable
region comprising the ErbB-2 binding site preferably comprises the sequence of the
CDR1 region, CDR2 region and the CDR3 region of a VH chain in Figure 16A or Figure
16E. The VH variable region comprising the ErbB-3 binding site preferably comprises
the sequence of the CDR1 region, CDR2 region and the CDR3 region of a VH chain in
Figure 16B or Figure 16E or Figure 37. CDR grafting may also be used to produce a
VH chain with the CDR regions of a VH of Figure 16 or Figure 37, but having a different
framework. The different framework may be of another human VH, or a different mammal.
[0101] The mentioned at most 15, preferably 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acid substitutions
are preferably conservative amino acid substitutions. The insertions, deletions, substitutions
or a combination thereof are preferably not in the CDR3 region of the VH chain, preferably
not in the CDR1, CDR2 or CDR3 region of the VH chain and preferably not in the FR4
region.
[0102] The light chain of a variable domain comprising a variable heavy chain sequence as
depicted in Figure 16 or Figure 37, is preferably germline light chain 012, preferably
the rearranged germline human kappa light chain IgVK1-39*01/IGJK1*01 or a fragment
or a functional derivative thereof (nomenclature according to the IMGT database worldwide
web at imgt.org). The terms rearranged germline human kappa light chain IgVK1-39*01/IGJK1*01,
IGKV1-39/IGKJ1, huVK1-39 light chain or in short huVK1-39 are used. The light chain
can have 1, 2, 3, 4 or 5 amino acid insertions, deletions, substitutions or a combination
thereof. The mentioned 1, 2, 3, 4 or 5 amino acid substitutions are preferably conservative
amino acid substitutions, the insertions, deletions, substitutions or a combination
thereof are preferably not in the CDR3 region of the VL chain, preferably not in the
CDR1, CDR2 or CDR3 region or FR4 region of the VL chain.
[0103] Various methods are available to produce bispecific antibodies. One method involves
the expression of two different heavy chains and two different light chains in a cell
and collecting antibody that is produced by the cell. Antibody produced in this way
will typically contain a collection of antibodies with different combinations of heavy
and light chains, some of which are the desired bispecific antibody. The bispecific
antibody can subsequently be purified from the collection. The ratio of bispecific
to other antibodies that are produced by the cell can be increased in various ways.
In a preferred embodiment of the invention, the ratio is increased by expressing not
two different light chains but two essentially identical light chains in the cell.
This concept is in the art also referred to as the "common light chain" method. When
the essentially identical light chains work together with the two different heavy
chains allowing the formation of variable domains with different antigen-binding sites
and concomitant different binding properties, the ratio of bispecific antibody to
other antibody that is produced by the cell is significantly improved over the expression
of two different light chains. The ratio of bispecific antibody that is produced by
the cell can be further improved by stimulating the pairing of two different heavy
chains with each other over the pairing of two identical heavy chains. The art describes
various ways in which such heterodimerization of heavy chains can be achieved. One
way is to generate 'knob into hole' bispecific antibodies. See
US Patent Application 20030078385 (Arathoon et al. - Genentech). Another and preferred method is described in
US provisional application 61/635,935, which has been followed up by US regular application No.
13/866,747 (
US 2013/0336981 A1) and PCT application No.
PCT/NL2013/050294 (
WO 2013/157954 A1). Methods and means are disclosed for producing bispecific antibodies from a single
cell, whereby means are provided that favor the formation of bispecific antibodies
over the formation of monospecific antibodies. These methods can also be favorably
employed in the present invention. Thus the invention discloses a method for producing
a bispecific antibody according to the invention (from a single cell), wherein said
bispecific antibody comprises two CH3 domains that are capable of forming an interface,
said method comprising providing in said cell a) a first nucleic acid molecule encoding
a 1st CH3 domain comprising heavy chain, b) a second nucleic acid molecule encoding
a 2nd CH3 domain comprising heavy chain, wherein said nucleic acid molecules are provided
with means for preferential pairing of said 1st and 2nd CH3 domain comprising heavy
chains, said method further comprising the step of culturing said host cell and allowing
for expression of said two nucleic acid molecules and harvesting said bispecific antibody
from the culture. Said first and second nucleic acid molecules may be part of the
same nucleic acid molecule, vector or gene delivery vehicle and may be integrated
at the same site of the host cell's genome. Alternatively, said first and second nucleic
acid molecules are separately provided to said cell.
[0104] A preferred embodiment discloses a method for producing a bispecific antibody according
to the invention (from a single cell), wherein said bispecific antibody comprises
two CH3 domains that are capable of forming an interface, said method comprising providing:
- a cell having a) a first nucleic acid molecule encoding a heavy chain comprising an
antigen binding site that binds ErbB-2 and that contains a 1st CH3 domain, and b)
a second nucleic acid molecule encoding a heavy chain comprising an antigen-binding
site that binds ErbB-3 and that contains a 2nd CH3 domain, wherein said nucleic acid
molecules are provided with means for preferential pairing of said 1st and 2nd CH3
domains,
said method further comprising the step of culturing said cell and allowing for expression
of said two nucleic acid molecules and harvesting said bispecific IgG antibody from
the culture. In a particularly preferred embodiment, said cell also has a third nucleic
acid molecule encoding a common light chain. Said first, second and third nucleic
acid molecule may be part of the same nucleic acid molecule, vector or gene delivery
vehicle and may be integrated at the same site of the host cell's genome. Alternatively,
said first, second and third nucleic acid molecules are separately provided to said
cell. A preferred common light chain is 012, preferably the rearranged germline human
kappa light chain IgVK1 39*01/IGJK1*01, as described above. Means for preferential
pairing of said 1
st and said 2
nd CH3 domain are preferably the corresponding mutations in the CH3 domain of the heavy
chain coding regions. The preferred mutations to produce essentially only bispecific
antibodies are the amino acid substitutions L351K and T366K (numbering according to
Kabat) in the first CH3 domain and the amino acid substitutions L351D and L368E in
the second CH3 domain, or vice versa. Further disclosed is therefore a method according
to the disclosure for producing a bispecific antibody, wherein said first CH3 domain
comprises the amino acid substitutions L351K and T366K (numbering according to Kabat)
and wherein said second CH3 domain comprises the amino acid substitutions L351D and
L368E, said method further comprising the step of culturing said cell and allowing
for expression of said nucleic acid molecules and harvesting said bispecific antibody
from the culture. Also disclosed is a method according to the disclosure for producing
a bispecific antibody, wherein said first CH3 domain comprises the amino acid substitutions
L351D and L368E (numbering according to Kabat) and wherein said second CH3 domain
comprises the amino acid substitutions L351K and T366K, said method further comprising
the step of culturing said cell and allowing for expression of said nucleic acid molecules
and harvesting said bispecific antibody from the culture. Antibodies according to
the invention that can be produced by these methods are also part of the present invention.
The CH3 heterodimerization domains are preferably IgG1 heterodimerization domains.
The heavy chain constant regions comprising the CH3 heterodimerization domains are
preferably IgG1 constant regions.
[0105] In one embodiment the invention discloses a nucleic acid molecule encoding an antibody
heavy chain variable region according to the invention. The nucleic acid molecule
(typically an
in vitro, isolated or recombinant nucleic acid) preferably encodes a heavy chain variable
region as depicted in Figure 16A or Figure 16B or Figure 37, or a heavy chain variable
region as depicted in Figure 16A or Figure 16B or Figure 37 having 1, 2, 3, 4 or 5
amino acid insertions, deletions, substitutions or a combination thereof. In a preferred
aspect the nucleic acid molecule comprises a sequence as depicted in Figure 16 or
Figure 37. In another preferred aspect the nucleic acid molecule encodes the same
amino acid sequence as the nucleic acid depicted in Figure 16 or Figure 37, but has
a different sequence because it encodes one or more different codons. For instance,
such nucleic acid molecule is codon optimized for antibody producer cells, such as
for instance Chinese hamster ovary (CHO) cells, NS0 cells or PER-C6™ cells. The invention
further discloses a nucleic acid sequence encoding a heavy chain of Figure 16D or
Figure 37.
[0106] A nucleic acid molecule as used in the invention is typically but not exclusively
a ribonucleic acid (RNA) or a deoxyribonucleic acid (DNA). Alternative nucleic acids
are available for a person skilled in the art. A nucleic acid according to the invention
is for instance comprised in a cell. When said nucleic acid is expressed in said cell,
said cell produces an antibody according to the invention. Therefore, the invention
in one embodiment discloses a cell comprising an antibody according to the invention
and/or a nucleic acid according to the disclosure. Said cell is preferably an animal
cell, more preferably a mammal cell, more preferably a primate cell, most preferably
a human cell. For the purposes of the invention a suitable cell is any cell capable
of comprising and preferably of producing an antibody according to the invention and/or
a nucleic acid according to the disclosure.
[0107] The invention further discloses a cell comprising an antibody according to the invention.
Preferably said cell (typically an
in vitro, isolated or recombinant cell) produces said antibody. In a preferred aspect said
cell is a hybridoma cell, a CHO cell, an NS0 cell or a PER-C6™ cell. In a particularly
preferred aspect said cell is a CHO cell. Further disclosed is a cell culture comprising
a cell according to the invention. Various institutions and companies have developed
cell lines for the large scale production of antibodies, for instance for clinical
use. Non-limiting examples of such cell lines are CHO cells, NS0 cells or PER.C6™
cells. These cells are also used for other purposes such as the production of proteins.
Cell lines developed for industrial scale production of proteins and antibodies are
herein further referred to as industrial cell lines. Thus in a preferred aspect the
invention discloses the use of a cell line developed for the large scale production
of antibody for the production of an antibody of the invention.
[0108] The invention further discloses a method for producing an antibody comprising culturing
a cell of the disclosure and harvesting said antibody from said culture. Preferably
said cell is cultured in a serum free medium. Preferably said cell is adapted for
suspension growth. Further disclosed is an antibody obtainable by a method for producing
an antibody according to the disclosure. The antibody is preferably purified from
the medium of the culture. Preferably said antibody is affinity purified.
[0109] A cell of the disclosure is for instance a hybridoma cell line, a CHO cell, an NS0
cell or another cell type known for its suitability for antibody production for clinical
purposes. In a particularly preferred aspect said cell is a human cell. Preferably
a cell that is transformed by an adenovirus E1 region or a functional equivalent thereof.
A preferred example of such a cell line is the PER.C6™ cell line or equivalent thereof.
In a particularly preferred aspect said cell is a CHO cell or a variant thereof. Preferably
a variant that makes use of a Glutamine synthetase (GS) vector system for expression
of an antibody.
[0110] The invention further provides a composition, preferably a pharmaceutical composition,
comprising an antibody according to the invention. The pharmaceutical composition
preferably comprises a (pharmaceutically acceptable) excipient or carrier. In a preferred
embodiment the pharmaceutical composition comprises 5-50 mM Histidine, 100-300 mM
Trehalose, 0.1-03 g/L PolySorbate20 or a combination thereof. The pH is preferably
set at pH = 5.5 - 6.5. In a preferred embodiment the pharmaceutical composition comprises
25 mM Histidine, 220 mM Trehalose, 0.2 g/L PolySorbate20 or a combination thereof.
The pH is preferably set at pH = 5.5-6.5, most preferably at pH = 6.
[0111] An antibody of the invention preferably further comprises a label, preferably a label
for
in vivo imaging. Such a label is typically not necessary for therapeutic applications. In
for instance a diagnostic setting, a label can be helpful. For instance in visualizing
target cells in the body. Various labels are suited and many are well known in the
art. In a preferred embodiment the label is a radioactive label for detection. In
another preferred embodiment, the label is an infrared label. Preferably the infrared
label is suited for
in vivo imaging. Various infrared labels are available to the person skilled in the art.
Preferred infrared labels are for instance, IRDye 800; IRDye 680RD; IRDye 680LT; IRDye
750; IRDye 700DX; IRDye 800RS IRDye 650; IRDye 700 phosphoramidite; IRDye 800 phosphoramidite
(LI-COR USA; 4647 Superior Street; Lincoln, Nebraska).
[0112] The invention further discloses a method for the treatment of a subject having a
ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor or at risk of having said tumor comprising
administering to the subject an antibody or pharmaceutical composition according to
the invention. Before start of said treatment, the method preferably comprises determining
whether said subject has, or is at risk of, such ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive
tumor. In some embodiments, the subject is classified as [+] or [++] for ErbB-2. In
another embodiment the subject is classified as [+++] for ErbB-2. The invention further
provides an antibody of the invention for use in the treatment of a subject having
or at risk of having an ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor. Alternatively
formulated, the invention discloses a use of an antibody according to the invention
for the manufacture of a medicament or prophylactic agent for the treatment of an
ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor. As used herein, the term treatment
encompasses prophylaxis.
[0113] The tumor is preferably an ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive cancer. Preferably
said positive cancer is a breast cancer, such as early-stage breast cancer. However,
the invention can be applied to a wide range of ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive
cancers, like gastric cancer, colorectal cancer, colon cancer, gastro-esophageal cancer,
esophageal cancer, endometrial cancer, ovarian cancer, liver cancer, lung cancer including
non-small cell lung cancer, clear cell sarcoma, salivary gland cancer, head and neck
cancer, brain cancer, bladder cancer, pancreatic cancer, prostate cancer, kidney cancer,
skin cancer, and melanoma. Said antibody according to the present invention is typically
capable of reducing a ligand-induced receptor function, preferably ligand induced
growth, of ErbB-3 on a ErbB-2 and ErbB-3 positive cell. Said antibody according to
the invention comprises a first antigen-binding site that binds domain I of ErbB-2
and a second antigen-binding site that binds domain III of ErbB-3. In one preferred
embodiment, the affinity (KD) of said second antigen-binding site for an ErbB-3 positive
cell is equal to, or higher than, the affinity of said first antigen-binding site
for an ErbB-2 positive cell. Further provided is therefore an antibody according to
the invention comprising a first antigen-binding site that binds ErbB-2 and a second
antigen-binding site that binds ErbB-3 for use in the treatment of a subject having
or at risk of having an ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor, preferably
breast cancer, gastric cancer, colorectal cancer, colon cancer, gastro-esophageal
cancer, esophageal cancer, endometrial cancer, ovarian cancer, liver cancer, lung
cancer including non-small cell lung cancer, clear cell sarcoma, salivary gland cancer,
head and neck cancer, brain cancer, bladder cancer, pancreatic cancer, prostate cancer,
kidney cancer, skin cancer, or melanoma, wherein the affinity of said second antigen-binding
site for an ErbB-3 positive cell is equal to, or higher than, the affinity of said
first antigen-binding site for an ErbB-2 positive cell. The affinity of said second
antigen-binding site for an ErbB-3 positive cell is preferably lower than or equal
to 2.0 nM, more preferably lower than or equal to 1.39 nM, more preferably lower than
or equal to 0.99 nM. The affinity of said first antigen-binding site for an ErbB-2
positive cell is preferably lower than or equal to 5.0 nM, preferably lower than or
equal to 4.5 nM preferably lower than or equal to 4.0 nM. In one preferred embodiment,
said antibody is antibody PB4188.
[0114] In one preferred embodiment, said antibody according to the invention comprises an
antigen-binding site that binds at least one amino acid of domain I of ErbB-2 selected
from the group consisting of T144, T164, R166, P172, G179, S180 and R181, and surface-exposed
amino acid residues that are located within about 5 amino acid positions from T144,
T164, R166, P172, G179, S180 or R181.
[0115] In one preferred embodiment, said antibody according to the invention preferably
comprises an antigen-binding site that binds at least one amino acid of domain III
of ErbB-3 selected from the group consisting R426 and surface-exposed amino acid residues
that are located within 11.2 Å from R426 in the native ErbB-3 protein.
[0116] Further provided is therefore an antibody according to the invention comprising a
first antigen-binding site that binds ErbB-2 and a second antigen-binding site that
binds ErbB-3 for use in the treatment of a subject having or at risk of having an
ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor, preferably breast cancer, gastric
cancer, colorectal cancer, colon cancer, gastro-esophageal cancer, esophageal cancer,
endometrial cancer, ovarian cancer, liver cancer, lung cancer including non-small
cell lung cancer, clear cell sarcoma, salivary gland cancer, head and neck cancer,
brain cancer, bladder cancer, pancreatic cancer, prostate cancer, kidney cancer, skin
cancer, or melanoma, wherein said antibody according to the invention comprises an
antigen-binding site that binds at least one amino acid of domain I of ErbB-2 selected
from the group consisting of T144, T164, R166, P172, G179, S180 and R181, and surface-exposed
amino acid residues that are located within about 5 amino acid positions from T144,
T164, R166, P172, G179, S180 or R181,
and/or wherein said antibody according to the invention preferably comprises an antigen-binding
site that binds at least one amino acid of domain III of ErbB-3 selected from the
group consisting of R426 and surface-exposed amino acid residues that are located
within 11.2 Å from R426 in the native ErbB-3 protein.
[0117] The subject is preferably a human subject. The subject is preferably a subject eligible
for monoclonal antibody therapy using an ErbB-2 specific antibody such as trastuzumab.
In a preferred embodiment the subject comprises a tumor, preferably an ErbB-2/ErbB-3
positive cancer, preferably a tumor/cancer with an ErbB-2 therapy resistant phenotype
and/or a heregulin resistance phenotype, preferably a monoclonal antibody resistant
phenotype. A tumor involving such phenotype can escape treatment with a current anti-HER2
regimen, such as (but not limited to) monoclonal antibody therapy against ErbB-2.
[0118] The amount of antibody according to the invention to be administered to a patient
is typically in the therapeutic window, meaning that a sufficient quantity is used
for obtaining a therapeutic effect, while the amount does not exceed a threshold value
leading to an unacceptable extent of side-effects. The lower the amount of antibody
needed for obtaining a desired therapeutic effect, the larger the therapeutic window
will typically be. An antibody according to the invention exerting sufficient therapeutic
effects at low dosage is, therefore, preferred. The dosage can be in the range of
the dosing regime for trastuzumab or lower.
[0119] The present invention describes among others antibodies that target the ErbB-2 and
ErbB-3 receptors and result in potent proliferation inhibition of cancer cell lines
in vitro and tumor growth inhibition
in vivo, even in the presence of an escape mechanism such as for instance upregulation of
NRG1-β1. A diverse panel of human and murine Fab binding arms specific for either
ErbB-2 or ErbB-3 were identified. These were produced as bispecific antibodies by
cloning them into complementary expression vectors that contain mutations in the CH3
region that drives heterodimerization of heavy chains. More than 500 bispecific antibodies
were produced at small scale and tested in binding and functional assays on three
different cancer cell lines. Various bispecific antibodies were selected and tested
in an orthotopic xenograft model using the BxPC3 cell line. This cell line expresses
both the ErbB-2 and ErbB-3 receptors and is partially dependent on the ErbB-3 ligand
for growth. BxPC3 models are a robust and stringent screening model. Furthermore,
a strong anti-tumor activity
in vivo has been confirmed using a xenograft model using the JIMT-1 cell line. JIMT-1 cells
are derived from a pleural metastasis of a 62-year old patient with breast cancer
who was clinically resistant to trastuzumab. JIMT-1 cells grow as an adherent monolayer
and form xenograft tumors in nude mice. JIMT-1 cells have an amplified HER-2 oncogene,
which showed no identifiable mutations in its coding sequence. JIMT-1 cells overexpress
HER-2 mRNA and protein, and the levels of HER-1, HER-3, and HER-4 mRNA and protein
are similar to the trastuzumab-sensitive cell line SKBR-3 (
Tanner et al, Mol Cancer Ther 2004).
[0120] Importantly, a better anti-tumor effect was obtained using an antibody according
to the invention as compared to the currently used monoclonal antibodies trastuzumab
and pertuzumab, as well as the chemical compound lapatinib.
[0121] Antibodies of the invention can be produced at levels > 50 mg/L after transient transfection
in suspension 293F cells. The bispecific antibodies can be purified to greater than
98% purity with yields > 70%. Analytical characterization studies show bispecific
lgGl antibody profiles that are comparable to bivalent monospecific lgG1. In terms
of functional activity a bispecific antibody of the invention can demonstrate superior
potency compared to trastuzumab + pertuzumab
in vitro and
in vivo.
[0122] Preferred embodiments of the invention provide combination therapy. In one embodiment,
an antibody according to the invention is combined with trastuzumab or pertuzumab,
since these antibodies bind different ErbB-2 epitopes so that they do not compete
for the same epitope with an antibody according to the invention, as shown in the
Examples. In another embodiment, an antibody according to the invention is combined
with MM-121 (#Ab6) or RG7116 (Roche), since these antibodies bind different ErbB-3
epitopes so that they do not compete for the same epitope with an antibody according
to the invention, as shown in the Examples.
[0123] In another preferred embodiment, a binding compound according to the invention that
is specific for ErbB-2 and ErbB-3 is combined with an inhibitor of a component of
the PI3Kinase pathway and/ or with an inhibitor of a component of the MAPK pathway,
such as for instance with a tyrosine kinase inhibitor, a PI3Ka inhibitor, an Akt inhibitor,
an mTOR inhibitor or an Src inhibitor. In one embodiment a binding compound according
to the invention that is specific for ErbB-2 and ErbB-3 is combined with a microtubuli
disrupting drug or with an inhibitor of a histone deacetylase (HDAC). Surprisingly,
the inventors have found a synergistic effect when these combinations are used. Further
disclosed is therefore a method for the treatment of a subject having a ErbB-2, ErbB-3
or ErbB-2/ErbB-3 positive tumor or at risk of having said tumor, the method comprising
administering to the subject:
- a binding compound that is specific for ErbB-2 and ErbB-3, and
- one or more compounds selected from the group consisting of an inhibitor of a component
of the PI3Kinase pathway, an inhibitor of a component of the MAPK pathway, a microtubuli
disrupting drug, and an inhibitor of a histone deacetylase (HDAC). Said inhibitor
preferably comprises a tyrosine kinase inhibitor, a PI3Ka inhibitor, an Akt inhibitor,
an mTOR inhibitor or an Src inhibitor. Said tyrosine kinase inhibitor is preferably
afatinib, lapatinib and/or neratinib. Said PI3Ka inhibitor is preferably BYL719. In
one aspect, said Akt inhibitor is MK-2206. In one preferred aspect, said mTOR inhibitor
is everolimus. In one preferred aspect, said Src inhibitor is saracatinib. In one
preferred aspect, said microtubuli disrupting drug is paclitaxel. In one preferred
aspect, said HDAC inhibitor is vorinostat. In one preferred aspect, said binding compound
that is specific for ErbB-2 and ErbB-3 is MM-111 (Merrimack Pharmaceuticals). In one
preferred aspect, said binding compound that is specific for ErbB-2 and ErbB-3 is
a bispecific antibody. In one preferred aspect, said binding compound that is specific
for ErbB-2 and ErbB-3 is a bispecific antibody according to the invention.
[0124] Further disclosed is therefore a method for the treatment of a subject having a ErbB-2,
ErbB-3 or ErbB-2/ErbB-3 positive tumor or at risk of having said tumor, the method
comprising administering to the subject:
- a bispecific antibody comprising a first antigen-binding site that binds ErbB-2 and
a second antigen-binding site that binds ErbB-3, and
- one or more compounds selected from the group consisting of an inhibitor of a component
of the PI3Kinase pathway, an inhibitor of a component of the MAPK pathway, a microtubuli
disrupting drug, and an HDAC inhibitor.
[0125] Also provided is a bispecific antibody according to the invention comprising a first
antigen-binding site that binds ErbB-2 and a second antigen-binding site that binds
ErbB-3 for use in the treatment of a ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor,
wherein said treatment comprises administering said bispecific antibody and at least
one compound selected from the group consisting of an inhibitor of a component of
the PI3Kinase pathway, an inhibitor of a component of the MAPK pathway, a microtubuli
disrupting drug, and an HDAC inhibitor to a subject having a ErbB-2, ErbB-3 or ErbB-2/ErbB-3
positive tumor. Preferably, a bispecific antibody according to the invention having
a first antigen-binding site that binds domain I of ErbB-2 and a second antigen-binding
site that binds domain III of ErbB-3 is combined with one or more compounds selected
from the group consisting of an inhibitor of a component of the PI3Kinase pathway,
an inhibitor of a component of the MAPK pathway, a microtubuli disrupting drug, and
an HDAC inhibitor. Said inhibitor preferably comprises a tyrosine kinase inhibitor,
a PI3Ka inhibitor, an Akt inhibitor, an mTOR inhibitor or an Src inhibitor. Said tyrosine
kinase inhibitor is preferably afatinib, lapatinib and/or neratinib. Said PI3Ka inhibitor
is preferably BYL719. In one embodiment, said Akt inhibitor is MK-2206. In one preferred
embodiment, said mTOR inhibitor is everolimus. In one preferred embodiment, said Src
inhibitor is saracatinib. In one preferred embodiment, said microtubuli disrupting
drug is paclitaxel. In one preferred embodiment, said HDAC inhibitor is vorinostat.
[0126] Said ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor is preferably breast cancer,
gastric cancer, colorectal cancer, colon cancer, gastro-esophageal cancer, esophageal
cancer, endometrial cancer, ovarian cancer, liver cancer, lung cancer including non-small
cell lung cancer, clear cell sarcoma, salivary gland cancer, head and neck cancer,
brain cancer, bladder cancer, pancreatic cancer, prostate cancer, kidney cancer, skin
cancer, or melanoma. Most preferably, said tumor is breast cancer. In one embodiment,
said ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor has less than 1.000.000 ErbB-2
cell-surface receptors per tumor cell.
[0127] In one embodiment, an antibody according to the present invention that is combined
with one or more compounds selected from the group consisting of an inhibitor of a
component of the PI3Kinase pathway, an inhibitor of a component of the MAPK pathway,
a microtubuli disrupting drug and an HDAC inhibitor, preferably with at least one
compound selected from the group consisting of a tyrosine kinase inhibitor, a PI3Ka
inhibitor, an Akt inhibitor, an mTOR inhibitor, an Src inhibitor, vorinostat and paclitaxel,
more preferably with at least one compound selected from the group consisting of afatinib,
lapatinib, neratinib, BYL719, MK-2206, everolimus, saracatinib, vorinostat and paclitaxel,
is typically capable of reducing a ligand-induced receptor function, preferably ligand
induced growth, of ErbB-3 on a ErbB-2 and ErbB-3 positive cell. Said antibody according
to the invention comprises a first antigen-binding site that binds domain I of ErbB-2
and a second antigen-binding site that binds domain III of ErbB-3. In one preferred
embodiment, the affinity (KD) of said second antigen-binding site for an ErbB-3 positive
cell is equal to, or higher than, the affinity of said first antigen-binding site
for an ErbB-2 positive cell. The affinity of said second antigen-binding site for
an ErbB-3 positive cell is preferably lower than or equal to 2.0 nM, more preferably
lower than or equal to 1.39 nM, more preferably lower than or equal to 0.99 nM. The
affinity of said first antigen-binding site for an ErbB-2 positive cell is preferably
lower than or equal to 5.0 nM, preferably lower than or equal to 4.5 nM preferably
lower than or equal to 4.0 nM.
[0128] In one preferred embodiment, an antibody according to the invention that is combined
with one or more compounds selected from the group consisting of an inhibitor of a
component of the PI3Kinase pathway, an inhibitor of a component of the MAPK pathway,
a microtubuli disrupting drug and an HDAC inhibitor, preferably with at least one
compound selected from the group consisting of a tyrosine kinase inhibitor, a PI3Ka
inhibitor, an Akt inhibitor, an mTOR inhibitor, an Src inhibitor, vorinostat and paclitaxel,
more preferably with at least one compound selected from the group consisting of afatinib,
lapatinib, neratinib, BYL719, MK-2206, everolimus, saracatinib, vorinostat and paclitaxel,
comprises an antigen-binding site that binds at least one amino acid of domain I of
ErbB-2 selected from the group consisting of T144, T164, R166, P172, G179, S180 and
R181, and surface-exposed amino acid residues that are located within about 5 amino
acid positions from T144, T164, R166, P172, G179, S180 or R181.
[0129] In one preferred embodiment, an antibody according to the invention that is combined
with one or more compounds selected from the group consisting of an inhibitor of a
component of the PI3Kinase pathway, an inhibitor of a component of the MAPK pathway,
a microtubuli disrupting drug and an HDAC inhibitor, preferably with at least one
compound selected from the group consisting of a tyrosine kinase inhibitor, a PI3Ka
inhibitor, an Akt inhibitor, an mTOR inhibitor, an Src inhibitor, vorinostat and paclitaxel,
more preferably with at least one compound selected from the group consisting of afatinib,
lapatinib, neratinib, BYL719, MK-2206, everolimus, saracatinib, vorinostat and paclitaxel,
comprises an antigen-binding site that binds at least one amino acid of domain III
of ErbB-3 selected from the group consisting of R426 and surface-exposed amino acid
residues that are located within 11.2 Å from R426 in the native ErbB-3 protein.
[0130] Preferably, a bispecific antibody according to the invention comprising at least
the CDR3 sequence, preferably at least the CDR1, CDR2 and CDR3 sequences, of an ErbB-2
specific heavy chain variable region selected from the group consisting of MF2926,
MF2973, MF3004, MF3958, MF2971, MF3025, MF2916, MF3991, MF3031, and MF3003 as depicted
in Figure 16A or Figure 16E, and/or comprising at least the CDR3 sequence, preferably
at least the CDR1, CDR2 and CDR3 sequences, of an ErbB-3 specific heavy chain variable
region selected from the group consisting of MF3178; MF3176; MF3163; MF3099; MF3307;
MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF
6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 and MF6074 as
depicted in Figure 16B or Figure 16E or Figure 37 is combined with one or more compounds
selected from the group consisting of an inhibitor of a component of the PI3Kinase
pathway, an inhibitor of a component of the MAPK pathway, a microtubuli disrupting
drug and an HDAC inhibitor, preferably with at least one compound selected from the
group consisting of a tyrosine kinase inhibitor, a PI3Ka inhibitor, an Akt inhibitor,
an mTOR inhibitor, an Src inhibitor, vorinostat and paclitaxel, more preferably with
at least one compound selected from the group consisting of afatinib, lapatinib, neratinib,
BYL719, MK-2206, everolimus, saracatinib, vorinostat and paclitaxel
[0131] In one preferred embodiment a bispecific antibody according to the invention comprising:
- an ErbB-2 specific heavy chain variable region sequence selected from the group consisting
of the heavy chain variable region sequences of MF2926, MF2973, MF3004, MF3958, MF2971,
MF3025, MF2916, MF3991, MF3031, and MF3003 as depicted in Figure 16A or Figure 16E,
or comprising an ErbB-2 specific heavy chain variable region sequence that differs
in at most 15 amino acids, preferably in at most 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino
acids, more preferably in at most 1, 2, 3, 4 or 5 amino acids, from the heavy chain
variable region sequences of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025, MF2916,
MF3991, MF3031, or MF3003, and
- an ErbB-3 specific heavy chain variable region sequence selected from the group consisting
of the heavy chain variable region sequences of MF3178; MF3176; MF3163; MF3099; MF3307;
MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF
6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 and MF6074 as
depicted in Figure 16B or Figure 16E or Figure 37, or comprising an ErbB-3 specific
heavy chain variable region sequence that differs in at most 15 amino acids, preferably
in at most 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acids, more preferably in at most
1, 2, 3, 4 or 5 amino acids, from the heavy chain variable region sequences of MF3178;
MF3176; MF3163; MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061;
MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072;
MF6073 or MF6074, is combined with one or more compounds selected from the group consisting
of an inhibitor of a component of the PI3Kinase pathway, an inhibitor of a component
of the MAPK pathway, a microtubuli disrupting drug and an HDAC inhibitor, preferably
with at least one compound selected from the group consisting of a tyrosine kinase
inhibitor, a PI3Ka inhibitor, an Akt inhibitor, an mTOR inhibitor, an Src inhibitor,
vorinostat and paclitaxel, more preferably with at least one compound selected from
the group consisting of afatinib, lapatinib, neratinib, BYL719, MK-2206, everolimus,
saracatinib, vorinostat and paclitaxel. In one preferred embodiment, antibody PB4188
is combined with one or more compounds selected from the group consisting of an inhibitor
of a component of the PI3Kinase pathway, an inhibitor of a component of the MAPK pathway,
a microtubuli disrupting drug and an HDAC inhibitor, preferably with at least one
compound selected from the group consisting of a tyrosine kinase inhibitor, a PI3Ka
inhibitor, an Akt inhibitor, an mTOR inhibitor, an Src inhibitor, vorinostat and paclitaxel,
more preferably with at least one compound selected from the group consisting of afatinib,
lapatinib, neratinib, BYL719, MK-2206, everolimus, saracatinib, vorinostat and paclitaxel.
[0132] Preferred embodiments of the invention provide antibodies according to the invention
for use under heregulin stress conditions. Heregulin is a growth factor that is involved
in growth of ErbB-3 positive tumor cells. Typically, when the tumor cells express
high levels of heregulin (referred to as heregulin stress), currently known therapies
like trastuzumab, pertuzumab and lapatinib are no longer capable of inhibiting tumor
growth. This phenomenon is called heregulin resistance. Surprisingly, however, an
antibody according to the invention is also capable of counteracting growth of tumor
cells that express high levels of heregulin. As used herein, an expression level of
heregulin is considered high if a cell has a heregulin expression level that is at
least 60%, preferably at least 70%, more preferably at least 80%, more preferably
at least 85%, more preferably at least 90% or 95% of the heregulin expression level
of BXPC3 or MCF7 cells. Heregulin expression levels are for instance measured using
qPCR with tumor RNA (such as for instance described in
Shames et al. PLOS ONE, February 2013, Vol.8, Issue 2, pp 1-10 and in
Yonesaka et al., Sci.transl.Med., Vol.3, Issue 99 (2011); pp1-11), or using protein detection methods, like for instance ELISA, preferably using blood,
plasma or serum samples (such as for instance described in
Yonesaka et al., Sci.transl.Med., Vol.3, Issue 99 (2011); pp1-11). Further provided is therefore an antibody according to the invention for use in
the treatment of a subject having or at risk of having an ErbB-2, ErbB-3 or ErbB-2/ErbB-3
positive tumor, wherein said cells of said tumor have a heregulin expression level
that is at least 60%, preferably at least 70%, more preferably at least 80%, more
preferably at least 85%, more preferably at least 90% or 95% of the heregulin expression
level of BXPC3 or MCF7 cells. Said antibody according to the invention comprises a
first antigen-binding site that binds domain I of ErbB-2. Also disclosed is a method
for the treatment of a subject having a ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor,
wherein cells of said tumor have a heregulin expression level that is at least 60%,
preferably at least 70%, more preferably at least 80%, more preferably at least 85%,
more preferably at least 90% or 95% of the heregulin expression level of BXPC3 or
MCF7 cells, the method comprising administering to the subject an antibody or pharmaceutical
composition according to the invention. One preferred aspect provides a use of an
antibody according to the invention for the preparation of a medicament for the treatment
of an ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor, wherein cells of said tumor
have a heregulin expression level that is at least 60%, preferably at least 70%, more
preferably at least 80%, more preferably at least 85%, more preferably at least 90%
or 95% of the heregulin expression level of BXPC3 or MCF7 cells. Said ErbB-2, ErbB-3
or ErbB-2/ErbB-3 positive tumor is preferably breast cancer, gastric cancer, colorectal
cancer, colon cancer, gastro-esophageal cancer, esophageal cancer, endometrial cancer,
ovarian cancer, liver cancer, lung cancer including non-small cell lung cancer, clear
cell sarcoma, salivary gland cancer, head and neck cancer, brain cancer, bladder cancer,
pancreatic cancer, prostate cancer, kidney cancer, skin cancer, or melanoma. Most
preferably, said tumor is breast cancer. Further provided is therefore an antibody
according to the invention for use in the treatment of a subject having or at risk
of having breast cancer, gastric cancer, colorectal cancer, colon cancer, gastro-esophageal
cancer, esophageal cancer, endometrial cancer, ovarian cancer, liver cancer, lung
cancer including non-small cell lung cancer, clear cell sarcoma, salivary gland cancer,
head and neck cancer, brain cancer, bladder cancer, pancreatic cancer, prostate cancer,
kidney cancer, skin cancer, or melanoma, preferably breast cancer, wherein cells of
said cancer have a heregulin expression level that is at least 60%, preferably at
least 70%, more preferably at least 80%, more preferably at least 85%, more preferably
at least 90% or 95% of the heregulin expression level of BXPC3 or MCF7 cells. Said
antibody according to the invention comprises a first antigen-binding site that binds
domain I of ErbB-2.
[0133] High heregulin levels are typically present during the formation of metastases (i.e.
the migration, invasion, growth and/or differentiation of tumor cells or tumor initiating
cells). Typically, tumor initiating cells are identified based on stem cell markers
such as for instance CD44, CD24, CD133 and/or ALDH1. These processes can therefore
barely be counteracted with currently known therapies like trastuzumab and pertuzumab.
Since an antibody according to the invention is capable of counteracting growth and/or
differentiation of tumor cells or tumor initiating cells that express high levels
of heregulin, such antibody according to the invention is also particularly suitable
for counteracting the formation of metastases. Further disclosed is therefore a method
for counteracting the formation of a metastasis in a subject having a ErbB-2, ErbB-3
or ErbB-2/ErbB-3 positive tumor, wherein said ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive
tumor cell has a heregulin expression level that is at least 60%, preferably at least
70%, more preferably at least 80%, more preferably at least 85%, more preferably at
least 90% or 95% of the heregulin expression level of BXPC3 or MCF7 cells, comprising
administering to the subject a bispecific antibody comprising a first antigen-binding
site that binds ErbB-2 and a second antigen-binding site that binds ErbB-3. Also provided
is a bispecific antibody according to the invention comprising a first antigen-binding
site that binds ErbB-2 and a second antigen-binding site that binds ErbB-3 for use
in the treatment or prevention of the formation of metastases, wherein said ErbB-2,
ErbB-3 or ErbB-2/ErbB-3 positive tumor cell has a heregulin expression level that
is at least 60%, preferably at least 70%, more preferably at least 80%, more preferably
at least 85%, more preferably at least 90% or 95% of the heregulin expression level
of BXPC3 or MCF7 cells. Further disclosed is a use of a bispecific antibody according
to the invention for the preparation of a medicament for the treatment or prevention
of the formation of metastases, wherein said ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive
tumor cell has a heregulin expression level that is at least 60%, preferably at least
70%, more preferably at least 80%, more preferably at least 85%, more preferably at
least 90% or 95% of the heregulin expression level of BXPC3 or MCF7 cells. Said ErbB-2,
ErbB-3 or ErbB-2/ErbB-3 positive tumor is preferably breast cancer, gastric cancer,
colorectal cancer, colon cancer, gastro-esophageal cancer, esophageal cancer, endometrial
cancer, ovarian cancer, liver cancer, lung cancer including non-small cell lung cancer,
clear cell sarcoma, salivary gland cancer, head and neck cancer, brain cancer, bladder
cancer, pancreatic cancer, prostate cancer, kidney cancer, skin cancer, or melanoma.
Most preferably, said tumor is breast cancer. Further provided is therefore a bispecific
antibody according to the invention comprising a first antigen-binding site that binds
ErbB-2 and a second antigen-binding site that binds ErbB-3 for use in the treatment
or prevention of the formation of metastases of breast cancer, gastric cancer, colorectal
cancer, colon cancer, gastro-esophageal cancer, esophageal cancer, endometrial cancer,
ovarian cancer, liver cancer, lung cancer including non-small cell lung cancer, clear
cell sarcoma, salivary gland cancer, head and neck cancer, brain cancer, bladder cancer,
pancreatic cancer, prostate cancer, kidney cancer, skin cancer, or melanoma cells,
preferably breast cancer cells, wherein said cells have a heregulin expression level
that is at least 60%, preferably at least 70%, more preferably at least 80%, more
preferably at least 85%, more preferably at least 90% or 95% of the heregulin expression
level of BXPC3 or MCF7 cells. Said antibody according to the present invention is
typically capable of reducing a ligand-induced receptor function, preferably ligand
induced growth, of ErbB-3 on a ErbB-2 and ErbB-3 positive cell. Said antibody according
to the invention comprises a first antigen-binding site that binds domain I of ErbB-2
and a second antigen-binding site that binds domain III of ErbB-3. In one preferred
embodiment, the affinity (KD) of said second antigen-binding site for an ErbB-3 positive
cell is equal to, or higher than, the affinity of said first antigen-binding site
for an ErbB-2 positive cell. The affinity of said second antigen-binding site for
an ErbB-3 positive cell is preferably lower than or equal to 2.0 nM, more preferably
lower than or equal to 1.39 nM, more preferably lower than or equal to 0.99 nM. The
affinity of said first antigen-binding site for an ErbB-2 positive cell is preferably
lower than or equal to 5.0 nM, preferably lower than or equal to 4.5 nM preferably
lower than or equal to 4.0 nM.
[0134] In one preferred embodiment, said antibody according to the invention comprises an
antigen-binding site that binds at least one amino acid of domain I of ErbB-2 selected
from the group consisting of T144, T164, R166, P172, G179, S180 and R181, and surface-exposed
amino acid residues that are located within about 5 amino acid positions from T144,
T164, R166, P172, G179, S180 or R181.
[0135] In one preferred embodiment, said antibody according to the invention preferably
comprises an antigen-binding site that binds at least one amino acid of domain III
of ErbB-3 selected from the group consisting of R426 and surface-exposed amino acid
residues that are located within 11.2 Å from R426 in the native ErbB-3 protein.
[0136] One preferred embodiment provides an antibody according to the invention for use
in a method for the treatment of a subject having a ErbB-2, ErbB-3 or ErbB-2/ErbB-3
positive tumor wherein cells of said tumor have a heregulin expression level that
is at least 60%, preferably at least 70%, more preferably at least 80%, more preferably
at least 85%, more preferably at least 90% or 95% of the heregulin expression level
of BXPC3 or MCF7 cells, wherein said antibody comprises at least the CDR3 sequence,
preferably at least the CDR1, CDR2 and CDR3 sequences, or at least the heavy chain
variable region sequence, of an ErbB-2 specific heavy chain variable region selected
from the group consisting of MF2926, MF2973, MF3004, MF3958, MF2971, MF3025, MF2916,
MF3991, MF3031, and MF3003 as depicted in Figure 16A or Figure 16E.
[0137] One preferred embodiment provides an antibody according to the invention for use
in a method for the treatment of a subject having a ErbB-2, ErbB-3 or ErbB-2/ErbB-3
positive tumor wherein cells of said tumor have a heregulin expression level that
is at least 60%, preferably at least 70%, more preferably at least 80%, more preferably
at least 85%, more preferably at least 90% or 95% of the heregulin expression level
of BXPC3 or MCF7 cells, wherein said antibody comprises at least the CDR3 sequence,
preferably at least the CDR1, CDR2 and CDR3 sequences, or at least the heavy chain
variable region sequence, of an ErbB-3 specific heavy chain variable region selected
from the group consisting of MF3178; MF3176; MF3163; MF3099; MF3307; MF6055; MF6056;
MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063; MF6064; MF 6065; MF6066; MF6067;
MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 and MF6074 as depicted in Figure 16B
or Figure 16E or Figure 37. One embodiment provides antibody PB4188 for use in the
treatment of a subject having a ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor, wherein
cells of said tumor have a heregulin expression level that is at least 60%, preferably
at least 70%, more preferably at least 80%, more preferably at least 85%, more preferably
at least 90% or 95% of the heregulin expression level of BXPC3 or MCF7 cells.
[0138] As already described, antibodies according to the present invention are particularly
suitable for treating ErbB-2 positive tumor cells with less than 1.000.000 ErbB-2
receptors on their cell surface. Patients with such tumors, who are typically classified
as ErbB-2 [++] or ErbB-2 [+], include patients with primary tumors as well as patients
with relapsed ErbB-2 positive tumors. Currently used therapies such as trastuzumab
(Herceptin) and pertuzumab are only prescribed for patients with malignant ErbB-2
positive cells that have more than 1.000.000 ErbB-2 receptors on their cell surface,
which are classified as ErbB-2 [+++]. Patients that are classified as ErbB-2 [++]
or ErbB-2 [+] are therefore preferably treated with an antibody according to the present
invention. Further provided is therefore an antibody for use according to the invention,
wherein said subject has an ErbB-2 or ErbB-2/ErbB-3 positive tumor that has less than
1.000.000 ErbB-2 cell-surface receptors per tumor cell. One preferred embodiment provides
a bispecific antibody according to the invention comprising a first antigen-binding
site that binds ErbB-2 and a second antigen-binding site that binds ErbB-3 for use
in the treatment or prevention of the formation of metastases, wherein said ErbB-2,
ErbB-3 or ErbB-2/ErbB-3 positive tumor cell has a heregulin expression level that
is at least 60%, preferably at least 70%, more preferably at least 80%, more preferably
at least 85%, more preferably at least 90% or 95% of the heregulin expression level
of BXPC3 or MCF7 cells, and wherein said tumor cell has less than 1.000.000 ErbB-2
cell-surface receptors.
[0139] In another preferred embodiment, an antibody according to the invention is used for
counteracting an ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor in a subject who has
an impaired cardiac function, or who is at risk thereof. With an impaired cardiac
function is meant that the subject has a cardiac function, such as for instance the
left ventricular ejection fraction (LVEF), that is lower than 90%, preferably lower
than 85% or lower than 80%, preferably lower than 75% or lower than 70%, as compared
to a healthy cardiac function. Said healthy cardiac function is, for instance, the
average cardiac function (such as for instance the average LVEF) of the healthy population.
Alternatively, said healthy cardiac function is the function (such as the LVEF) as
measured in a patient before the start of anti-tumor therapy with an antibody according
to the invention.
[0140] Cardiac function is for instance monitored by a physical examination of the subject
and by an examination of the LVEF, using for instance an echocardiogram or a MUGA
scan.
[0141] ErbB-2 is involved in growth, repair, and survival of adult cardiomyocytes as part
of a signalling network that involves the heregulin receptor complex HER2:HER4. As
described herein before, cardiotoxicity is a known risk factor in ErbB-2 targeting
therapies and the frequency of complications is increased when trastuzumab is used
in conjunction with anthracyclines thereby inducing cardiac stress. For instance,
the combination of doxycycline with trastuzumab induces severe cardiac side effects.
Despite the increasing number of clinical cases of trastuzumab-induced cardiac dysfunction,
its mechanism of action is unknown. In view of the cardiotoxicity of currently known
therapies against ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumors, it is of particular
advantage to use an antibody according to the invention. As shown in the Examples,
antibodies have now been provided that do not, or to a significantly lesser extent
as compared to trastuzumab and pertuzumab, affect the survival of cardiomyocytes.
This provides an important advantage since cardiotoxicity is reduced. This is already
advantageous for people who do not suffer from an impaired cardiac function, and even
more so for people who do suffer from an impaired cardiac function, such as for instance
subjects suffering from congestive heart failure (CHF), left ventricular dysfunction
(LVD) and/or a decreased Left Ventricular Ejection Fraction (LVEF), and/or subjects
who have had a myocardial infarction. Further provided is therefore a bispecific antibody
according to the invention for use in the treatment of a subject having or at risk
of having an ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor, wherein said subject
has a cardiac function that is lower than 90%, preferably lower than 85% or lower
than 80% or lower than 75% or lower than 70%, as compared to a healthy cardiac function.
Said cardiac function preferably includes the LVEF. Said ErbB-2, ErbB-3 or ErbB-2/ErbB-3
positive tumor is preferably breast cancer, gastric cancer, colorectal cancer, colon
cancer, gastro-esophageal cancer, esophageal cancer, endometrial cancer, ovarian cancer,
liver cancer, lung cancer including non-small cell lung cancer, clear cell sarcoma,
salivary gland cancer, head and neck cancer, brain cancer, bladder cancer, pancreatic
cancer, prostate cancer, kidney cancer, skin cancer, or melanoma. Most preferably,
said tumor is breast cancer. Said antibody according to the invention comprises a
first antigen-binding site that binds domain I of ErbB-2 and a second antigen-binding
site that binds domain III of ErbB-3. One preferred embodiment provides an antibody
according to the invention for use in a method according to the invention for the
treatment of a subject having a ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor wherein
the subject has a cardiac function that is lower than 90%, preferably lower than 85%,
preferably lower than 80%, preferably lower than 75% or lower than 70%, as compared
to a healthy cardiac function, wherein said antibody comprises:
- at least the CDR3 sequence, preferably at least the CDR1, CDR2 and CDR3 sequences,
or at least the heavy chain variable region sequence, of an ErbB-2 specific heavy
chain variable region selected from the group consisting of MF2926, MF2973, MF3004,
MF3958, MF2971, MF3025, MF2916, MF3991, MF3031, and MF3003 as depicted in Figure 16A
or Figure 16E, or a heavy chain variable region sequence that differs in at most 15
amino acids, preferably in at most 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acids, more
preferably in at most 1, 2, 3, 4 or 5 amino acids, from the recited heavy chain variable
region sequences; and/or
- at least the CDR3 sequence, preferably at least the CDR1, CDR2 and CDR3 sequences,
or at least the heavy chain variable region sequence, of an ErbB-3 specific heavy
chain variable region selected from the group consisting of MF3178; MF3176; MF3163;
MF3099; MF3307; MF6055; MF6056; MF6057; MF6058; MF6059; MF6060; MF6061; MF6062; MF6063;
MF6064; MF 6065; MF6066; MF6067; MF6068; MF6069; MF6070; MF6071; MF6072; MF6073 and
MF6074 as depicted in Figure 16B or Figure 16E or Figure 37, or a heavy chain variable
region sequence that differs in at most 15 amino acids, preferably in at most 1, 2,
3, 4, 5, 6, 7, 8, 9 or 10 amino acids, more preferably in at most 1, 2, 3, 4 or 5
amino acids, from the recited heavy chain variable region sequences. In one preferred
embodiment, said antibody is PB4188.
[0142] In one embodiment, said bispecific antibody is for use in the treatment of a subject
under heregulin stress conditions, as explained in more detail elsewhere. Further
provided is therefore a bispecific antibody according to the invention for use in
the treatment of a subject having or at risk of having an ErbB-2, ErbB-3 or ErbB-2/ErbB-3
positive tumor, wherein said subject has a cardiac function that is lower than 90%,
preferably lower than 85%, preferably lower than 80%, preferably lower than 75% or
lower than 70%, as compared to a healthy cardiac function, and wherein said cells
of said tumor have a heregulin expression level that is at least 60%, preferably at
least 70%, more preferably at least 80%, more preferably at least 85%, more preferably
at least 90% or 95% of the heregulin expression level of BXPC3 or MCF7 cells. Said
cardiac function preferably includes the LVEF. Also disclosed is a method for the
treatment of a subject having a ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor, wherein
the subject has a cardiac function that is lower than 90%, preferably lower than 85%,
preferably lower than 80%, preferably lower than 75%, preferably lower than 70%, as
compared to a healthy cardiac function, and wherein cells of said tumor have a heregulin
expression level that is at least 60%, preferably at least 70%, more preferably at
least 80%, more preferably at least 85%, more preferably at least 90% or 95% of the
heregulin expression level of BXPC3 or MCF7 cells, the method comprising administering
to the subject a bispecific antibody or pharmaceutical composition according to the
invention. One preferred aspect discloses a use of a bispecific antibody according
to the invention for the preparation of a medicament for the treatment of an ErbB-2,
ErbB-3 or ErbB-2/ErbB-3 positive tumor in a subject who has a cardiac function, preferably
a LVEF, that is lower than 90%, preferably lower than 85%, preferably lower than 80%,
preferably lower than 75% or lower than 70%, as compared to a healthy cardiac function,
preferably a healthy LVEF, wherein cells of said tumor have a heregulin expression
level that is at least 60%, preferably at least 70%, more preferably at least 80%,
more preferably at least 85%, more preferably at least 90% or 95% of the heregulin
expression level of BXPC3 or MCF7 cells.
[0143] Also provided is a bispecific antibody according to the invention comprising a first
antigen-binding site that binds ErbB-2 and a second antigen-binding site that binds
ErbB-3 for use in the treatment or prevention of the formation of metastases, wherein
said subject has a cardiac function that is lower than 90%, preferably lower than
85%, preferably lower than 80%, preferably lower than 75%, preferably lower than 70%
as compared to a healthy cardiac function. Further disclosed is a use of a bispecific
antibody according to the invention for the preparation of a medicament for the treatment
or prevention of the formation of metastases, wherein said subject has a cardiac function
that is lower than 90%, preferably lower than 85%, preferably lower than 80%, preferably
lower than 75%, preferably lower than 70% as compared to a healthy cardiac function.
Said ErbB-2, ErbB-3 or ErbB-2/ErbB-3 positive tumor is preferably breast cancer, gastric
cancer, colorectal cancer, colon cancer, gastro-esophageal cancer, esophageal cancer,
endometrial cancer, ovarian cancer, liver cancer, lung cancer including non-small
cell lung cancer, clear cell sarcoma, salivary gland cancer, head and neck cancer,
brain cancer, bladder cancer, pancreatic cancer, prostate cancer, kidney cancer, skin
cancer, or melanoma. Most preferably, said tumor is breast cancer. Said cardiac function
preferably includes the LVEF. In one preferred embodiment, said antibody is antibody
PB4188.
[0144] In another embodiment, use is made of antibodies according to the invention for counteracting
phosphorylation of various factors of the prosurvival pathway Akt (also referred to
as the PI3 kinase pathway) and the MAP kinase pathway. These are downstream pro-proliferative
signaling pathways of HER3. Surprisingly, the inventors have succeeded in significantly
inhibiting phosphorylation of Akt, ERK1/2 and S6 ribosomal protein (S6-RP) with an
antibody according to the present invention, whereas trastuzumab and pertuzumab do
not have these strong anti-phosphorylation effects. Counteracting phosphorylation
of factors of the pro-proliferative PI3 kinase and MAP kinase pathways is advantageous,
since this counteracts growth of an ErbB-3 positive tumor cell. Further provided is
therefore a use of an antibody according to the invention for counteracting, preferably
inhibiting, phosphorylation of Akt, ERK1/2 and/or S6-RP. Importantly, phosphorylation
of Akt can be significantly reduced or even completely blocked with an antibody of
the invention, both
in vitro and
in vivo, as shown in the Examples. A preferred embodiment therefore provides a use of an
antibody according to the invention for counteracting, preferably inhibiting, phosphorylation
of Akt. Also provided is a use of an antibody according to the invention for counteracting
the formation of a HER3-p85 complex. Since the formation of a HER3-p85 complex is
the first phase in Akt activation, it is advantageous to counteracting the formation
of said HER3-p85 complex. Said antibody according to the invention is a bispecific
antibody comprising a first antigen-binding site that binds domain I ErbB-2 and a
second antigen-binding site that binds domain III of ErbB-3. Said antibody preferably
comprises an antigen-binding site that binds at least one amino acid of domain I of
ErbB-2 selected from the group consisting of T144, T164, R166, P172, G179, S180 and
R181, and surface-exposed amino acid residues that are located within about 5 amino
acid positions from T144, T164, R166, P172, G179, S180 or R181. Additionally, or alternatively,
said antibody preferably comprises an antigen-binding site that binds at least one
amino acid of domain III of ErbB-3 selected from the group consisting of F409 and
R426 and surface-exposed amino acid residues that are located within 11.2 Å from R426
in the native ErbB-3 protein. In one embodiment, said antibody comprises at least
one CDR1, CDR2 and CDR3 sequence, or at least one VH sequence, as depicted in Figure
16 or Figure 37. In one embodiment, said antibody is PB4188.
BRIEF DESCRIPTION OF THE DRAWINGS
[0145]
Figure 1 : Antigen titration on monomeric HER2 of a panel of HER2 arms that are also
present in active HER2xHER3 bispecific antibodies in combination with one arm of PG3178.
All HER2 monoclonals of the HER2xHER3 panel except for PG3025 were tested on an HER2
antigen titration ELISA.
Figure 2: Functional activity of HER2 x HER3 bispecific antibodies on BxPC3 cells
with or without ligand stimulation. Dotted lines represent activity of trastuzumab,
the reference antibody in this assay, with or without ligand stimulation.
Figure 3: Titration curves of HER2 and HER3 monoclonal antibodies (Upper panel) and
HER2 x HER3 bispecific antibodies thereof (Lower panel) in the MCF-7 assay
Figure 4: Antibody treatment effect on BxPC3-luc2 tumor size at day 31 in an orthotopic
murine model. BLI, tumor growth as measured by bioluminescence.
Figure 5: Antibody treatment effect on BxPC3-luc2 tumor size at day 31 in an orthotopic
murine model. BLI, tumor growth as measured by bioluminescence.
Figure 6: FACS analysis of a bispecific HER2xHER3 antibody and its parental monoclonal
antibodies on MCF-7 and BxPC3-luc2 HER2 expressing cells. MFI, mean fluorescence intensity.
Figure 7 : Analytical characterization by HP-SEC and CIEX-HPLC. PB4188 (upper panel),
anti-HER2 parental monoclonal antibody (middle panel), anti-RSV monoclonal reference
IgG (lower panel).
Figure 8: Inhibition of JIMT-1 cell proliferation in soft agar by a serial titration
of antibody.
Figure 9: Inhibition of BT-474 (upper panel) and SKBR3 (lower panel) cell proliferation
in matrigel by a serial titration of antibody.
Figure 10a: HRG induced proliferation and branching/invasion of SKBR-3 cells in matrigel.
Figure 10b:Inhibition of HRG induced proliferation and branching/invasion of SKBR-3
cells in matrigel by PB4188 in contrast to the parental monoclonal antibodies.
Figure 10c: Inhibition of HRG induced proliferation and branching/invasion of SKBR-3
cells in matrigel by PB4188 in contrast to anti-HER3 monoclonal antibodies.
Figure 10d: Inhibition of HRG induced proliferation and branching/invasion of SKBR-3
cells in matrigel by PB4188 in contrast to combinations of anti-HER3 monoclonal antibodies
with trastuzumab.
Figure 10e: Inhibition of HRG induced proliferation and branching/invasion of SKBR-3
cells in matrigel by PB4188 and the combination PB4188 plus trastuzumab
Figure 11: Superior inhibitory activity of PB4188 in HER2+++ N87 cells in the presence of 100 ng/ml HRG.
Figure 12: ADCC activity of PB4188 and PB3448 in a dose titration
Figure 13: Increased ADCC activity of bispecific antibody compared to monoclonal parental
antibodies or a combination thereof
Figure 14: ADCC activity of afucosylated PB4188 compared to trastuzumab on low (upper
panel) and high (lower panel) HER2 expressing cells
Figure 15: ADCC activity of afucosylated PB4188 on SKBR-3 HER2+++ cells in the presence of reporter cells expressing a high or low FcγR variant
Figure 16: Nucleic acid and amino acid sequences of VH-chains, common light chain
and heavy chains of antibodies of the invention. Where in this figure a leader sequence
is indicated this is not part of the VH chain or antibody, but is typically cleaved
of during processing of the protein in the cell that produces the protein.
Figure 17: Antibody treatment effect on tumor size in a JIMT-1 murine xenograft model.
Tumor growth measured by tumor volume caliper measurement of the different treatment
groups. Top, tumor growth during 60 days; bottom tumor growth inhibition (TGI) at
the end of treatment period (29 days).
Figure 18: Kaplan-Meier survival curves of the different treatment groups in the JIMT-1
murine xenograft model.
Figure 19: Inhibition of N87 ligand driven growth. HRG driven proliferation of N87
can be overcome over a wide range of HRG by PB4188 in contrast to the parental anti-HER3
antibody. Data shown at antibody concentration of 40 ng/ml.
Figure 20: Steady state cell affinity measurements of 125I-labeled IgG HER2xHER3 (PB4188) towards BT-474 cells (top; three independent assays)
and SK-BR-3 cells (bottom; three independent assays). Non-specific binding was determined
using a 100-fold excess of unlabeled HER2xHER3.
Figure 21A: Epitope mapping HER2. Critical residues identified are represented as
black spheres on the HER2 crystal structure, secondary critical residues identified
are represented as gray spheres (PDB ID #1S78).
Figure 21B
a) HER2 crystal structure (PDB #1S78) showing verified PG3958 epitope residues as
light gray spheres and surrounding residues (+/- five amino acid residues) as dark
gray spheres. b) Solvent exposed surface of epitope region showing verified epitope
residues in gray and surrounding residues (+/- five residues) in black. c) Detailed
view of epitope region with verified epitope residues in light gray and surrounding
residues (+/- five residues) in dark gray. d) Primary amino acid sequence of HER2
PG3958 epitope region indicating verified epitope residues (gray underlined), surrounding
residues (black) and distant residues (gray italic, not shown in a, b and c). Figures
and analyses were made with Yasara (www.yasara.org).
Figure 21C:
a) HER3 crystal structure (PDB #4P59) showing epitope residue Arg 426 in gray spheres
and all surface exposed residues within an 11.2 Å radius from Arg 426 in black spheres.
b) Solvent exposed surface of epitope region with Arg 426 and distant residues shown
in gray and all surface exposed residues within a 11.2 Å radius from Arg 426 shown
in black. c) Residues in the epitope region Arg 426 in light gray and surrounding
residues (all labeled) in dark gray. Figures and analyses were made with Yasara (www.yasara.org).
Figure 22: Confirmation of critical binding residues for Fab arm 3958 to HER2. Trastuzumab
was included as a control antibody. Binding was determined in a FACS titration and
binding is expressed as AUC in comparison to trastuzumab binding. D143Y is not considered
to be part of the 3958 epitope as binding of Trastuzumab to this mutant is also blocked.
Figure 23: Critical residues for PG3178 binding represented in the HER3 crystal structure.
Critical residues identified for PG3178binding are represented as black spheres on
the HER3 crystal structure (PDB ID # 4P59).
Figure 24: Confirmation of R426 as a critical binding residue for PG3175 to HER3.
Two anti-HER3 antibodies were included as control antibodies. Binding was determined
in a FACS titration and binding is expressed as AUC in comparison to binding to WT
HER3.
Figure 25: Absence of PB4188 toxicity under cardiac stress in vitro. Incubation of cardiomyocytes with PB4188 or monospecific benchmark antibodies in
the presence 3 µM of the anthracyclin doxorubicin. Viability of the cardiomyocytes
was determined by quantification of ATP and expressed in relative light units (RLU).
T, trastuzumab; P, pertuzumab.
Figure 26: Binding of PB4188 in comparison to trastuzumab and a HER3 antibody to HER2
amplified cells. FACS titrations were performed on the indicated cell lines expressing
different HER2 levels. Area under the curve of Median PE signal values were plotted
per cell line.
Figure 27: Binding of a serial titration of PB4188FITC to SKBR-3 cells preincubated with a saturated concentration of PB4188, trastuzumab
or a negative control antibody. PB4188FITC binds as effectively to SKBR-3 in the presence of trastuzumab or control antibody.
Figure 28: Inhibition of cell proliferation under HRG stress conditions by HER2xHER3
bispecific antibodies composed of the same HER3 Fab arm and different HER2 arms that
are directed against the four HER2 domains.
Figure 29: Synergistic combination of PB4188 with lapatinib on the growth and morphology
of SKBR-3 cells. Left, microscopical views of cells treated under different conditions;
right morphological changes plotted graphically in relation to the treatment conditions
Figure 30A+B: Inhibition of HRG mediated phosphorylation of N87 and SKBR-3 cells by
PB4188 in a time course experiment. Trastuzumab + Pertuzumab and HRG alone were included
as controls.
Figure 31: Inhibition of HRG mediated phosphorylation of N87 cells by PB4188 in a
time course experiment. Trastuzumab + Pertuzumab and lapatinib were included as controls.
Figure 32: Changes in Akt levels and Akt phosphorylation were assessed 4 H after a
two weekly of four weekly dose of PB4188. Phosphorylation levels in tumor lysates
were assessed by Luminex assays. Analysis were performed in duplicate and five tumors
were analyzed per group.
Figure 33: In vivo mediated effect of PB4188 on HER2:HER3 mediated signaling as analyzed by Vera Tag
analysis on JIMT-1 tumor material. Tumors were analyzed 4H after dosing, tumors derived
from PBS treated animals were included as controls.
Figure 34: PB4188 reduces cell cycle progression. Cell seeded in assay medium were
incubated with titration of antibodies in the presence of a standard (1 ng/ml) or
high (100 ng/ml) concentration of HRG. 24 hrs later (or 48 hrs for MCF-7 cells), cells
were analyzed for their distribution in the different phases of the cell cycle (G0/G1,
S or G2/M phases). Proliferation index was calculated as the ratio between the percentage
of cells in the S and G2/M phases and the percentage of cells in the G0/G1 phase.
P+T, pertuzumab + trastruzumab.
Figure 35: Internalization of antibodies labelled with pH-sensitive dye in HER2-overexpressing
cancer cells. N87 (A, B) and SKBR-3 (C, D) seeded in assay medium supplemented with
1 ng/ml HRG were incubated for 24 hrs with 100 nM pH-sensitive dye-labelled antibodies.
After harvesting, cells were stained with APC-labelled anti-human IgG secondary antibody
to detect cell surface-bound antibodies. Cells were analyzed by FACS for fluorescence
in the PE (A, C) to determine internalization and APC (B, D) channels to determine
surface binding of the antibodies.
Figure 36: ADCC activity of Trastuzumab versus Trastuzumab + Pertuzumab with cells
derived from two different donors.
Figure 37: Amino acid and nucleotide alignments of the F3178 variants. CDR regions
are indicated.
Figure 38: Titration curves of HER3 monoclonal antibodies in the HRG dependent N87
assay. PG6058, PG6061 and PG6065 are variants of PG3178. PG1337 is a negative control
specific for tetanus toxoid. Data were normalized to basal proliferation with ligand
present on each plate.
Figure 39: CIEX-HPLC profiles of HER3 monoclonal antibodies. PG6058, PG6061 and PG6065
are variants of PG3178. The calculated iso-electric point (pI) of the VH region and
the retention time (tR) of the main peak are given for each antibody.
Figure 40: In vitro drug combination isobolograms with PB4188 on HER2 amplified cell lines at HRG stress
concentrations (A) or grown in matrigel (B).
EXAMPLES
Methods, Materials and Screening for Antibodies
Cell Lines:
[0146] BxPC-3-luc2 (Perkin Elmer 125058), N87 (ATCC® CRL-5822™), SK-BR-3 (ATCC® HTB-30™),
BT-474 (ATCC® HTB-20™), JIMT-1 (DSMZ ACC 589), L929 (Sigma Aldrich 85011425), K562
(DSMZ ACC10), HEK293T (ATCC® -CRL-11268™), CHO-K1(DSMZ ACC110), MCF-7 (DSMZ ACC 115),
MDA-MB-468 (#300279-513, Cell line services) SK-OV-3 (ATCC ® HTB-77™), MDA-MB-175
(ATCC-HTB-25), MDA-MB-453 (ATCC-HTB-131), MDA-MB-361(ATCC-HTB-27), ZR-75-1 (ATCC-CRL-1500)
and MKN-45 (DSMZ ACC409) cell lines were purchased from ATCC, DSMZ or Sigma Aldrich
and routinely maintained in growth media supplemented with 10% heat inactivated fetal
bovine serum (FBS). HEK293F Freestyle cells were obtained from Invitrogen and routinely
maintained in 293 FreeStyle medium.
Generation of Recombinant Human, Chicken, rat and swapped domain vectors (cloning
of HER)
[0147] Human HER2. Full length Human HER2 was amplified by PCR from cDNA derived from RNA isolated from
the breast cancer cell line JIMT-1. The primers used for the amplification of human
HER2 were as follows. Forward primer: AAGCTGGCTAGCACCATGGAGCTGGCGGCCTTGTGC Reversed
primer: AATAATTCTAGACTGGCACGTCCAGACCCAGG. The full-length amplified product was digested
with Nhel and Xbal and subsequently cloned in the corresponding sites of pcDNA3.1
(Invitrogen).
The sequence was verified by comparison with the NCBI Reference Sequence NM_004448.2.
To generate constructs solely expressing the human HER2 extracellular domain (ECD)
for transfection and immunization purposes the HER2 transmembrane domain and ECD were
PCR amplified and recloned in pVax1. For transfection purposes another construct was
generated in pDisplay by amplifying the HER2 ECD domain, in this construct the HER2
ECD domain is fused to the PDGFR transmembrane domain.
[0148] Human HER3. The full length human cDNA clone of HER3 was obtained from Origene. To generate constructs
solely expressing the human HER3 ECD for transfection and immunization purposes the
HER3 transmembrane domain and ECD were PCR amplified and recloned in pVax1. In addition
another construct was generated in pVax1 whereby the HER3 ECD domain was fused to
the PDGFR transmembrane domain. All sequences were verified by comparison with the
NCBI Reference NM_001982.3
[0149] Cynomolgus HER2 extracellular domain was PCR amplified from cynomolgus cDNA - Monkey) Normal Colon
Tissue (Biochain). The primers used for the amplification of cynomolgus HER2 were
as follows:
Forward primer: AAGCTGGCTAGCACCATGGAGCTGGCGGCCTGGTAC Reversed primer: AATAATTCTAGACTGGCACGTCCAGACCCAGG
The full -length amplified product was digested with NheI-XbaI and subsequently cloned
in the corresponding sites of pcDNA3.1. The clone was sequenced and aligned with sequences
available of rhesus monkeys (XM_002800451) to check correctness of the ErbB-2 clone.
[0150] Cynomolgus HER3 extracellular domain was PCR amplified from cynomolgus cDNA - Monkey) Normal Colon
Tissue (Biochain). The primers used for the amplification of cynomolgus HER3 were
as follows:
Forward primer: AAGCTGGCTAGCACCATGAGGGCGAACGGCGCTCTG, Reversed primer: AATAATTCTAGATTACGTTCTCTGGGCATTAGC
The full -length amplified product was digested with NheI-XbaI and subsequently cloned
in the corresponding sites of pcDNA3.1. The clone was sequenced and aligned with sequences
available of rhesus monkeys (ENSMMUP00000027321) to check correctness of the HER3
clone.
[0151] The
chicken HER2 sequence was based on the reference sequence NM_001044661.1. Chimeric swapped domain
constructs were generated by swapping domains I until IV of the chicken HER2 sequence
for the human I domains I until IV. Sequences containing a myc tag were optimized
for expression in mammalian cells and synthesized at Geneart.
[0152] The
rat HER3 sequence was based on the reference sequence NM_001044661.1. Chimeric swapped domain
constructs were generated by swapping domains I until IV of the rat HER3 sequence
for the human I domains I until IV. Sequences containing a myc tag were optimized
for expression in mammalian cells and synthesized at Geneart.
Generation of HER2 and HER3 over-expressing cell lines
[0153] To generate cell lines that express high levels of HER3 on the cell surface a mammalian
expression vector was generated by excising the full length HER3 by a
NotI and
KpnI digestion. Subsequently the fragment was cloned in the corresponding sites of the
pcDNA3.1(-)/hygro vector. A full length HER2 and HER3 expression vector encoding a
neomycin resistance gene was used to generate cell lines that express high levels
of HER2 on the cell surface. Prior to transfection the plasmids were linearized by
a SSpI and Fspl digestion. Both vectors were transfected separately into K562 cells
and stable pools were generated following antibiotic selection. The resultant cell
lines (K562-HER2 and K562-HER3) expressed high levels of HER2 and HER3 on their cell
surface.
Immunizations
[0154] HER2 immunizations. Four different immunization strategies were applied. For cohort #A, six C57Bl/6 mice
were immunized with 2 x10
6 L929 cells transiently transfected with HER2 in 200 µl via intraperitoneal injection.
Subsequently, mice were boosted with 20 µg Erbb-2-Fc (RND systems) protein dissolved
in 125 µl Titermax Gold via intraperitoneal injection on day 14, followed by boosts
with 2 x10
6 L929 cells transiently transfected with HER2 in 200 µl on days 28 and 42. For cohort
#C, six C57Bl/6 mice were immunized with 2 x10
6 L929 cells transiently transfected with HER2 via intraperitoneal injection. Subsequently,
mice were boosted with 2 x10
6 L929 cells transiently transfected with HER2 in 200 µl via intraperitoneal injection
on day 14, followed by a protein boosts with 20 µg Erbb-2-Fc protein dissolved in
125 µl Titermax Gold via intraperitoneal injection on day 35 and a final boost with
20 µg Erbb-2-Fc protein dissolved in 200 µl PBS via intraperitoneal injection on day
49. For cohort #E, six C57Bl/6 mice were immunized with 20 µg Erbb-2-Fc protein dissolved
in 125 µl Titermax Gold via intraperitoneal injection. Subsequently, protein boosts
with 20 µg Erbb-2-Fc protein dissolved in 125 µl Titermax Gold via intraperitoneal
injection were made at day 14 and 28 and a final boost with 20 µg Erbb-2-Fc protein
dissolved in 200 µl PBS via intraperitoneal injection on day 42. For cohort #G, six
C57Bl/6 mice were immunized by DNA vaccination at Genovac (Freiburg, Germany) according
to their protocols. The endotoxin-free provided vectors used for the DNA vaccination
encoded the transmembrane and extracellular part of HER2 cloned in pVax1. Subsequently,
DNA boosts were given at day 14, 28 and 66.
[0155] HER3 immunizations. Four different immunization strategies were applied. For cohort #B, six (C57Bl/6)
mice were immunized with 2 x10
6 L929 cells transiently transfected with HER3 in 200 µl via intraperitoneal injection.
Subsequently, mice were boosted with 2 x10
6 L929 cells transiently transfected with HER3 in 200 µl on days 14, 28, 49 and 63.
For cohort #D, six C57Bl/6 mice were immunized with 2 x10
6 L929 cells transiently transfected with HER3 via intraperitoneal injection on day
0, 14 and 28. Subsequently, mice were boosted with 20 µg Erbb-3-Fc protein dissolved
in 125 µl Titermax Gold via intraperitoneal injection on day 49 and a final boost
with 20 µg Erbb-3-Fc protein dissolved in 200 µl PBS via intraperitoneal injection
on day 66. For cohort #F, six C57Bl/6 mice were immunized with 20 µg Erbb-3-Fc protein
dissolved in 125 µl Titermax Gold via intraperitoneal injection. Subsequently, mice
were boosted with 20 µg Erbb-3-Fc protein dissolved in 125 µl Titermax Gold via intraperitoneal
injection at day 14 and 28 and a final boost was given with 20 µg Erbb-3-Fc protein
dissolved in 200 µl PBS via intraperitoneal injection on day 42. For cohort #H, six
C57Bl/6 mice were immunized by DNA vaccination at Genovac (Freiburg, Germany) according
to their protocols. The endotoxin-free provided vectors used for the DNA vaccination
encoded the transmembrane of PDGFR and extracellular part of HER3 cloned in pVax1.
Subsequently, DNA boosts were given at day 14, 28 and 66.
Determination of antibody titers.
[0156] Anti-HER2 titers in the serum from immunized C57Bl/6 mice were determined by ELISA
against ECD-Erbb-2 protein (Bendermedsystems) and FACS analysis on the HER2 negative
K562, the HER2 low expressing cell line MCF-7 and HER2 amplified SKBR-3 and BT-474
cells. Anti-HER3 titers in the serum from immunized C57Bl/6 mice were determined by
ELISA against Erbb-3-Fc protein and FACS analysis on the HER3 negative K562, the HER2
low expressing cell line MCF-7 and HER2 amplified SKBR-3 and BT-474 cells.
[0157] Serum titers against HER2 and HER3 before sacrificing the animals are described in
Table 1 and Table 2 respectively. Animals in all cohorts developed antibody responses
against HER2 or HER3.
Recovery of lymphoid tissue.
[0158] Spleen and draining lymph nodes were removed from all mice vaccinated with DNA (cohorts
#G and #H). Single cell suspensions were generated from all tissues and subsequently
tissues were lysed in Trizol reagent. From cohorts #A until #F spleens were removed
from all mice except for one mouse of cohort #C that died after the first boost. Single
cell suspensions were generated from all spleens and the total B cell fraction was
isolated using the MACS separation procedure either by CD19 enrichment (cohorts #
A, E, F) or depletion of non-B cells (cohorts # B, C, D).
Generation of phage display libraries from immunized mice
[0159] One phage library was built for each mouse. To this end the material from all mice
per group (5 or 6 mice per group) was used to prepare phage libraries using the following
approach. From each individual mouse RNA was isolated and cDNA was synthesized and
VH-family specific PCRs were performed. Subsequently all VH-family PCR products per
mouse were purified and the DNA concentration was determined and digested and ligated
in a phage-display vector containing the common-light chain to generate a mouse-human
chimeric phage library. All phage libraries contained > 10
6 clones with an insert frequency of > 85%.
Selection of phages carrying Fab fragments specifically binding to HER2 and HER3
HER2 phage selection and screening
[0161] Phage libraries were rescued with VCS-M13 helper phage (Stratagene) and selected
for two rounds in immunotubes (Nunc) coated recombinant protein. In the first round
ECD-Erbb-2 protein (Bendermedsystems) was coated onto immunotubes whereas in the second
round Erbb-2-Fc (RND systems) was coated onto immunotubes. The immunotubes were blocked
with 4% non fat dry milk (ELK). Phage antibody libraries were also blocked with 4%
ELK prior to the addition of the phage library to the immunotubes. Incubation with
the phage library with the coated protein in the immune tubes was performed for 2
H at room temperature under rotating conditions. Immunotubes were then washed five
to ten times with 0.05% Tween-20 in PBS followed by 5 to 10 times in PBS. Bound phages
were eluted using 50mM glycine (pH 2.2) and added to E. coli XL-1 Blue and incubated
at 37°C for phage infection. Subsequently infected bacteria were plated on agar plates
containing Ampicillin, tetracyclin and glucose and incubated at 37°C overnight. After
the first round, colonies were scraped off the plates and combined and thereafter
rescued and amplified to prepare an enriched first round library. The enriched library
was then selected on Erbb-2-Fc (RND systems) using the protocol described above. After
the second round selection individual clones were picked and rescued to prepare a
phage monoclonal miniprep. Positive phage clones binding Erbb2 were then identified
in FACS for binding to the breast cancer cell line BT-474. The VH genes of all Erbb2
specific clones were sequenced. VH gene rearrangements were established with VBASE2
software to identify unique clones. All unique clones were then tested in phage format
for binding in FACS to HEK293T cells (negative control), HEK293T cells transiently
transfected with ErbB-2 and BT-474 cells.
HER3 phage selection and screening
[0162] Phage libraries were rescued with VCS-M13 helper phage (Stratagene) and selected
for two rounds in immunotubes (Nunc) coated with recombinant protein. In both selection
rounds round Erbb-3-Fc (RND systems) was coated onto immunotubes. To overcome a selection
bias towards the Fc part of the fusion protein, both selection rounds on Erbb-3-Fc
were performed in the presence of 150 µg/ml human IgG. The immunotubes were blocked
with 4% ELK. Phage antibody libraries were blocked with 4% ELK prior to the addition
of the phage library to the immunotubes. Incubation with the phage library was performed
for 2 H under rotating conditions. Immunotubes were then washed five to ten times
with 0.05% Tween-20 in PBS followed by 5 to 10 times in PBS. Bound phages were eluted
using 50mM glycine (pH 2.2) and added to E. coli XL-1 Blue and incubated for phage
infection. Subsequently infected bacteria were plated on agar plates containing Ampicillin,
tetracyclin and glucose and incubated at 37°C overnight. After the first round, colonies
were scraped off the plates and combined and phages were rescued and amplified to
prepare an enriched first round library. The enriched library was then selected on
Erbb-3-Fc (RND systems) using the protocol described above. After the second round
selection individual clones were picked and rescued to prepare a phage monoclonal
miniprep. Positive phage clones were identified in FACS for binding to the breast
cancer cell line BT-474. The VH genes of all positive clones were sequenced. VH gene
rearrangements were established with VBASE2 software to identify unique clones. All
unique clones were tested in phage format for binding in FACS to K562 cells (negative
control), stable K562-HER3 cells and BT-474 cells.
In total 36 selections were performed on Erbb2 and Erbb3 antigen formats. All selection
screening procedures resulted in 89 unique Fab clones directed against HER2 and 137
unique Fab clones directed against HER3. A Fab was considered unique based on its
unique HCDR3 sequence, an indication of a unique VDJ recombination event. In some
cases clonal variants were obtained, with an identical HCDR3 but differences in the
CDR1 and/or CDR2. From the immunized mice libraries clusters of clonal variants containing
substitutions in the VH gene reflecting affinity variants were selected.
Antibody selection/characterization
Generation of monoclonal antibodies
[0163] VH genes of unique antibodies, as judged by VH gene sequence and some sequence variants
thereof, derived from the immunized mouse phage libraries were cloned in the backbone
IgG1 vector. Two different production cell lines were used during the process; HEK293T
and 293F Freestyle cells. Adherent HEK293T cells were cultivated in 6-well plates
to a confluency of 80%. The cells were transiently transfected with the individual
DNA-FUGENE mixture and further cultivated. Seven days after transfection, supernatant
was harvested and medium was refreshed. Fourteen days after transfection supernatants
were combined and filtrated through 0.22 µM (Sartorius). The sterile supernatant was
stored at 4°C. Suspension adapted 293F Freestyle cells were cultivated in T125 flasks
at a shaker plateau until a density of 3.0 x 10
6 cells/ml. Cells were seeded at a density of 0.3-0.5 x 10
6 viable cells/ml in each well of a 24-deep well plate. The cells were transiently
transfected with the individual sterile DNA: PEl mixture and further cultivated. Seven
days after transfection, supernatant was harvested and filtrated through 0.22 µM (Sartorius).
The sterile supernatant was stored at 4°C.
Generation of bispecific antibodies
[0164] Bispecific antibodies were generated using the proprietary CH3 technology to ensure
efficient hetero-dimerisation and formation of a bispecific antibody. The CH3 technology
uses charge-based point mutations in the CH3 region to allow efficient pairing of
two different heavy chain molecules as previously described (
PCT/NL2013/050294; published as
WO 2013/157954 A1).
IgG purification for functional screening
[0165] The purification of IgG was performed at small scale (< 500 µg), medium scale (<10
mg) and large scale (>10 mg) using affinity chromatography. Small scale purifications
were performed under sterile conditions in 24 well filter plates using vacuum filtration.
First the pH of the medium was adjusted to pH 8.0 and subsequently the small scale
productions were incubated with protein A Sepharose CL-4B beads (50% v/v) (Pierce)
for 2 H at 25°C on a shaking platform at 600 rpm (Heidolph plate shaker). Next the
beads were harvested by vacuum filtration. Beads were washed twice with PBS pH 7.4.
IgG was eluted at pH 3.0 with 0.1 M citrate buffer and the IgG fraction was immediately
neutralized by Tris pH 8.0. Buffer exchange was performed by centrifugation using
multiscreen Ultracel 10 multiplates (Millipore). The samples ended up in a final buffer
of PBS pH 7.4
Validation of HER2/HER3 specific IgGs
[0166] Antibodies were tested for binding in FACS to BT-474, HEK293T and HEK293T overexpressing
HER2 or HER3. Therefore cells were harvested using trypsin and diluted to 10
6cells/ml in FACS buffer (PBS/0.5%BSA/0.5mM EDTA). 1-2 x10
5cells were added to each well in a U-bottom 96 well plate. Cells were centrifuged
for 2 minutes at 300 g at 4°C. Supernatant was discarded by inverting plate(s). 50
µl of each IgG sample was added at a concentration of 10 µg/ml and incubated for 1H
on ice. Cells were centrifuged once, supernatant was removed and cells were washed
twice with FACS buffer. 50 µl diluted 1:100 mouse anti human IgG PE (Invitrogen) was
added and incubated for 30-60 minutes on ice in the dark. After adding FACS buffer,
cells were centrifuged once, supernatant was removed and cells were washed twice with
FACS buffer. Cells were analysed on a FACSCanto Flow cytometer in a HTS setting. Binding
of the antibodies to cells was assessed by mean fluorescence intensity (MFI).
To test for non-specific binding reactivity ELISA assays were used. HER2 and HER3
antibodies were tested for reactivity against the antigens fibrinogen, hemoglobulin
and tetanus toxin. To test specific binding to HER2 and HER3, the antibodies were
tested for binding to purified recombinant extracellular domains of EGFR, HER2, HER3
and HER4. Antigens were coated overnight to MAXISORP™ ELISA plates. Wells of the ELISA
plates were blocked with PBS (pH 7.2) containing 5% BSA for 1 hour at 37°C. Selected
antibodies were tested in duplo at a concentration of 10 µg/ml diluted in PBS-2% BSA
and allowed to bind for 2 hours at 25°C. As a control the procedure was performed
simultaneously with an antibody specific for the coated antigens and a negative control
antibody. The ELISA plates were washed 5 times with PBS-T (PBS-0.05% v/v Tween 20).
Bound IgG was detected with 1:2000 diluted HRP-conjugate (Goat anti-mouse BD) and
was allowed to bind for 2 hours at 25°C. The ELISA plates were washed 5 times with
PBS-T (PBS-0.05% Tween 20) and bound IgG was detected by means of OD492nm measurement.
Epitope grouping of HER2/HER3 specific IgGs
[0167] The panel of anti-HER2 antibodies was binned based on their reactivity to the HER2
ECD derived from other species (mouse, chicken) and on their binding to specific domains
in the HER2 molecule i.e. domains I, II, III and IV using chimeric constructs.
The panel of anti-HER3 antibodies was binned based on their reactivity to the HER3
ECD derived from other species (cyno, rat) and on their binding to specific domains
in the HER3 molecule i.e. domains I, II, III and IV using chimeric constructs.
For this purpose CHO-K1 cells were transiently transfected with the relevant constructs
using lipofectamin/DNA mixes. In the chimeric swapped domain construct, domains of
chicken HER2 or rat HER3 are replaced by the human counterpart. Binding of the specific
antibodies was measured by FACS. Expression of the constructs was confirmed using
an anti-myc antibody. FACS staining with trastuzumab was included as a control for
specific binding to domain IV. Antibodies in each group could be ranked based on the
intensity of staining (MFI). The HER2 panel of 65 antibodies could be mapped into
seven bins (Table 3).
- 1. Domain I specific (25)
- 2. Domain II specific (2)
- 3. Domain III specific (23)
- 4. Domain IV specific (7)
- 5. Domain IV specific and cross reactive to mouse (2)
- 6. Reactive to all constructs (2)
- 7. Only reactive to human HER2 (4)
Competition with trastuzumab
[0168] Two antibodies mapped to HER2 domain IV inhibited proliferation of SKBR-3 cells.
Both antibodies shared a similar CDR3 except for one amino acid difference. One antibody,
PG1849 was investigated for its capacity to compete with trastuzumab in a competition
ELISA. In this ELISA Fc-HER2 was coated and incubated with a concentration of 15 µg/ml
IgG antibody. After an incubation of 15 minutes phages were allowed to incubate for
another hour. Thereafter, phages were detected. Table 4 demonstrates that PG1849 and
trastuzumab could bind simultaneously to HER2 since no loss of signal appeared during
the ELISA. True competition only was observed when the same phage and antibody were
combined in the assay.
[0169] The HER3 panel of 124 antibodies could be mapped into five bins (Table 5):
- 1. High Domain III reactivity, rat and mouse reactive and minor reactivity to domain
IV (8)
- 2. High Domain III reactivity, rat, human and cyno reactive, minor reactivity to domain
IV (8)
- 3. Only reactivity to rat, cyno and human HER3 (43)
- 4. Only reactive to human HER3 (32)
- 5. Reactive to all constructs (33)
Cell line proliferation assays
[0170] SK-BR-3 cells were cultured in DMEM-F/12 supplemented with L-glutamine and 10% heat
inactivated FBS. BxPC-3-luc2 cells were cultured in RPMI1640 supplemented with 10%
heat inactivated FBS. MCF-7 cells were cultured in RPMI1640 supplemented with 100
µM, NEAA1 mM sodium pyruvate, 4 µg/ml insulin and 10% heat inactivated FBS.
[0171] For the proliferation assay of SK-BR-3 cells, subconfluent cell cultures were washed
with PBS, trypsinized and trypsin was inactivated by adding culture medium. Cells
were diluted to 6x10
4 cells/ml in culture medium. Antibodies were diluted to concentrations of 10 and 1
µg/ml and added in a volume of 100 µl in 96-well black bottom plates (ABgene AB-0932).
Cells were added at density of 6000 cells/well. The cells were cultivated for 3 days
at 37°C, 5% CO, in 95% relative humidity. Alamar Blue™ (Invitrogen) was added according
to the manufacturer's instructions and incubated for 6 hours at 37°C, 5% CO, in 95%
relative humidity in the dark. Fluorescence was measured at 550 nm excitation and
590 nm emission wavelength. The extent of growth inhibition was compared to that of
the same concentration of trastuzumab (Table 6).
For the proliferation assay of MCF-7 and BxPC-3-luc2 cells, subconfluent cell cultures
were washed with PBS, trypsinized and trypsin was inactivated by adding culture medium.
Cells were washed twice in large volumes of assay medium (RPMI 1640 medium containing
0.05% BSA and 10 µg/ml Holo Transferrin). MCF-7 cells were diluted to 5x10
4 cells/ml in culture medium. Antibodies were diluted to concentrations of 10 and 1
µg/ml and added in a volume of 100 µl in 96-well black bottom plates (ABgene AB-0932).
Cells were added at a density of 5000 cells/well in the presence of 1 ng/ml final
concentration human Recombinant Human NRG1-beta 1/HRG1-beta 1 EGF Domain; (396-HB-050
RND). Human NRG1-beta 1/HRG1-beta 1 EGF Domain will hereinafter be referred to as
HRG. The cells were cultivated for 5 days at 37°C, 5% CO, in 95% relative humidity.
Alamar Blue™ (Invitrogen) was added according to the manufacturer's instructions and
incubated for 24 hours at 37°C, 5% CO2, in 95% relative humidity in the dark. Fluorescence
was measured at 550 nm excitation with 590 nm emission wave length. The extent of
growth inhibition was compared to that of the same concentration of #Ab6 (Table 7).
[0172] BxPC-3-luc-2 proliferation assays were used to screen the bispecific antibodies.
BxPC-3-luc-2 cells were diluted to 8x10
4 cells/ml in culture medium. Antibodies were diluted to concentrations of 10 and 1
µg/ml and added in a volume of 100 µl in 96-well black bottom plates (ABgene AB-0932).
Cells were added at density of 8000 cells/well in the absence or presence of 10 ng/ml
final concentration human HRG. The cells were cultivated for 4 days at 37°C, 5% CO,
in 95% relative humidity. Alamar Blue™ (Invitrogen) was added according to the manufacturer's
instructions and incubated for 4 hours at 37°C, 5% CO, in 95% relative humidity in
the dark. Fluorescence was measured at 550 nm excitation with 590 nm emission wave
length.
To minimalize edge effects, the outer wells of the 96 well plates were fully filled
with PBS.
Affinity ranking of HER2 specific IgGs
[0173] We used the method described by
Devash (PNAS, 1990) to rank the antibodies in a limited antigen-ELISA. The use of decreased antigen
coating concentrations eliminates observed cross-reactivity reactions and can be used
to detect high-affinity/avidity antibodies. Therefore the antigen concentration on
the solid support was gradually decreased to investigate the weak immunoreactivities.
A serial titration of ECD-Erbb-2 protein starting from 2.5 µg/ml until 0.019 µg/ml
was coated overnight to MAXISORP™ ELISA plates. Wells of the ELISA plates were blocked
with PBS (pH 7.2) containing 5% BSA for 1 hour at 37°C. Selected antibodies were tested
in duplo at a concentration of 10 µg/ml diluted in PBS-2% BSA and allowed to bind
for 2 hours at 25°C. As a control the procedure was performed simultaneously with
an antibody specific for the coated antigens and a negative control antibody. The
ELISA plates were washed 5 times with PBS-T (PBS-0.05% v/v Tween 20). Bound IgG was
detected with 1:2000 diluted HRP-conjugate (Goat anti-mouse IgG, BD Biosciences) and
was allowed to bind for 2 hours at 25°C. The ELISA plates were washed 5 times with
PBS-T (PBS-0.05% Tween 20) and bound IgG was detected by means of OD492nm measurement.
PG1849, PG2916, PG2926, PG2930, PG2971, PG2973, PG3004 and PG3031 were tested in an
HER2 antigen titration ELISA (Fig. 1).
Binding of HER2 VH genes with various kappa light chains
[0174] To investigate the binding of HER2 VHs derived from different phage display libraries
a panel of HER2 antibodies was cloned and expressed in the context of another VK kappa
chain, i.e. the VL of MEHD7945A. Produced IgGs were subjected to FACS analysis on
K562 cells and stable K562-HER2 cells. VH genes derived from the combinatorial libraries
and non-combinatorial libraries are listed in Table 8. The VH chains MF2971, MF3958,
MF2916, MF2973, MF3004, MF3025, MF3031 all could be combined with the MEHD7945A light
chain without loosing significant antigen specificity and binding as observed when
combined with the common light chain IGKV1-39. VH chain MF1849 was not able to combine
with the variant kappa light chain and retain antigen specificity and binding.
Other HER2 and HER3 antibodies
[0175] Antibodies that inhibit the function of HER2 or HER3 are known in the art. Further
antibodies were constructed according to published information and expressed in 293F
Freestyle cells. The anti-HER2 antibodies pertuzumab and trastuzumab were generated
based on the information disclosed in
US2006/0212956 A1 (Genentech). The anti-HER3 antibody #Ab6, was based on the information disclosed
in
WO 2008/100624 (Merrimack Pharmaceuticals, Inc.) and recloned in a IgG1 back bone vector. The information
of the 1-53 and U1-59 anti-HER3 antibodies was obtained from
US 7,705,103 B2 (U3 Pharma AG). The information of the anti-HER3 LJM716 antibody was obtained from
US 2012/0107306. The information for the construction of the two-in-one anti-EGFR anti-HER3 antibody
MEHD7945A was obtained from
WO2010/108127.
Screening of HER2xHER3 bispecific antibodies
[0176] VH from the HER2 and HER3 antibody panel were recloned into the charged engineered
vectors such that upon expression of the antibody heavy chains heterodimerization
of heavy chains is forced resulting in the generation of bispecific antibodies after
transfection. Three different strategies were used in combining HER2 and HER3 arms
in bispecific IgG format:
- 1. HER2 (blocking ligand independent growth) xHER3 (blocking ligand independent growth)
- 2. HER2 (blocking ligand independent growth) xHER3 (blocking ligand dependent growth)
- 3. HER2 from different epitope bins x HER3 (blocking ligand dependent growth)
[0177] In some bispecific combinations, antibodies generated in group 2 and 3 overlapped
with group 1.
A total of 495 bispecific antibodies was produced in 24-well format and purified.
All antibodies were tested for their capacity to inhibit the proliferation of the
HER2- and HER3-expressing pancreatic BxPC-3-luc-2 cell line (Caliper). The potency
of the antibodies was determined in a HRG-dependent and HRG-independent setting in
a black and white screening with antibodies being present at a concentration of 10
and 1 µg/ml. Trastuzumab was included as a reference antibody as well as a negative
control antibody at the same concentrations. The functional activity of the top 80
HER2xHER3 bispecifics (based on combined inhibition) at 1 µg/ml is shown in Figure
2.
Antibodies (40 in total) that showed a higher inhibitory activity compared to the
positive control antibody were selected, reproduced and purified in a 24-well format
and tested again in the black-and-white BxPC-3-luc-2 screen at 10 and 1 µg/ml concentrations.
These antibodies were further titrated in HRG-dependent MCF-7 assay and compared against
the combination of trastuzumab and pertuzumab (1:1) and a negative control antibody.
Figure 3 shows an example of titration curves of three bispecific antibodies in comparison
to the parental HER3 antibody and the combination of trastuzumab + pertuzumab. The
parental monoclonal antibodies are shown in the top panel and the bispecific antibodies
are shown in the lower panel. (Figure 3).
The IC
50 for the bispecific antibodies, monoclonals and comparator antibodies was calculated
using non-linear regression analysis with Prism software. Graph pad software lists
the IC
50 values of the bispecific antibodies in the MCF-7 assay and their inhibitory activity
in the BxPC3 assay for comparison. A panel of 12 HER2xHER3 bispecific antibodies had
more potent inhibiting activity compared to trastuzumab + pertuzumab. In addition
the bispecific antibodies were equally or more potent than the parental monoclonal
PG3178 (Table 9).
The bispecific antibodies that inhibited ligand dependent cell growth were composed
of HER2 arms in combination with the HER3 arms 3178, 3163, 3099 and 3176. Both the
HER2 and HER3 arms of the most potent bispecifics were as a bivalent monoclonal also
capable of inhibiting ligand-independent SKBR-3 proliferation (both the HER2 and HER3
arms) (Table 6) or ligand dependent MCF-7 proliferation (HER3 arms) (Table 7). The
majority of the potent antibodies was composed of a HER2 arm recognizing domain I
in combination with anti-HER3 antibody 3178.
Inhibition of BxPC-3-luc2 tumor growth
[0178] The antibodies described in Table 9 were tested in a BxPC-3-luc2 pancreatic xenograft
model. The BxPC-3-luc2 cell line expresses both HER2 and HER3 and is considered a
HER2 low expressing cell line. CB17 SCID female mice, 8-10 weeks old at the beginning
of the study were engrafted orthotopically in the pancreas with 1×10
6 tumor cells in 20µl. To this aim mice were anesthetized and laid on the right side
to expose the left side and a 0.5 cm incision was made on the left flank region. The
pancreas and spleen were exteriorized and 1×10
6 tumor cells in 20µl was injected into the sub-capsulary space of the pancreas tail.
One week after implantation, bioluminescence (BLI) data were generated. 15 minutes
prior to the imaging, all of the mice received i.p. injections of 150 mg/kg Luciferin
(D-Luciferin-EF Potassium Salt, Cat. #E6552, Promega). BLI imaging was performed once
or twice weekly using the left side view. Outlier animals - based on BLI/tumor volume
- were removed and the mice were randomly distributed into groups of 7 mice each.
On experimental day 8, the treatment was started. The animals in the antibody treatment
group were dosed weekly for 3 consecutive weeks (days 0, 7, 14 and 21) with 30 mg/kg
of antibody. At day 0 of the treatment the animals received twice the loading dose,
i.e. 60 mg/kg of antibody. The final imaging was carried out at day 31.
Two BxPC-3-luc2 xenograft models were run with a different panel of bispecific antibodies
and parental antibodies In the first BxPC-3-luc2 xenograft model (Figure 4), one group
received the negative control anti-RSV antibody (Ctrl IgG), one group received the
control antibody trastuzumab and one group received the positive control antibody
trastuzumab + pertuzumab (1:1 v/v). The seven remaining groups received one of the
monoclonal (PG) or bispecific (PB) antibodies PG3004, PG3178, PB3566, PB3710, PB3443,
PB3448 and PB3441. Details of the composition of the bispecific antibodies are depicted
in Table 9.
[0179] All five bispecific antibodies tested were able to inhibit tumor growth. The mean
tumor mass (BLI) of bispecific HER2 x HER3 antibody treated animals was similar to
that in the animals treated with the combination of trastuzumab + pertuzumab. (Fig.
4)
In the second BxPC-3-luc2 xenograft model (Figure 5), one group received the negative
control anti-RSV antibody (Ctrl IgG) and one group received the positive control antibody
combination trastuzumab + pertuzumab (1:1 v/v). The five remaining groups received
one of the antibodies PG3163, PB3986, PB3990, PB4011 and PB3883. For details about
the bispecific PB antibodies: Table 9. These bispecific antibodies contained three
different HER3 binding arms combined with the same HER2 arm MF2971 and an additional
HER2 arm combined with the HER3 binding arm MF3163. In this experiment the tumors
in the control group did not show the same level of accelerated growth as in the first
experiment complicating interpretation of the results. Nevertheless, in comparison
to trastuzumab + pertuzumab the PB3883 and PB3990 HER2xHER3 bispecifics had similar
inhibitory activities (Fig. 5).
Based on the
in vivo and
in vitro data a bispecific panel of antibodies was selected of which the HER2 arms were composed
of MF2971, MF3004, MF1849 and the HER3 arm was composed of MF3178. The MF2971 and
MF3004 arm were of mouse origin and were humanized.
Binding of bispecific HER2xHER3 antibody compared to parental monoclonal antibodies
[0180] Binding of HER2xHER3 bispecific antibodies as compared to their parental counterparts
was determined by FACS analysis. A FACS was performed on BxPC-3-luc2 cells and MCF-7
cells with a serial titration of antibodies ranging from 2,5 µg g/ml - 0, 01 µg g/ml.
The tested antibody panel was composed of the bispecific antibody PB3566 and its parental
antibodies the anti-HER3 antibody PG3178 and the anti-HER2 antibody PG3004. The MFI
data were plotted and the graphs on both cell lines show that the bispecific PB3566
binds more effectively to both tumor cell lines compared to the anti-HER3 antibody
PG3178 and the anti-HER2 antibody PG3004. (Fig. 6)
Humanization of MF2971 and MF3004
[0181] MF2971 and MF3004 were humanized according to technology known in the art. A total
of seven humanised/de-immunised variant sequences of MF2971 were expressed, validated
and characterised in vitro as monoclonal and in bispecific format combination with
the HER3-specific antibody MF3178. The same was done for seven variant sequences of
MF3004, which were created by replacing the HCDR3 of MF2971 in the seven MF2971 variants
with the HCDR3 of MF3004. The expression, integrity, thermal stability and functional
activity of all humanized variants was analysed. Based on production, integrity, stability
and functionality integrity, a variant of MF2971 (2971-var2) was chosen as the optimal
humanized variant of the VH to be used in a bispecific format with MF3178. This 2971-var2
was renamed MF3958. The bispecific HER2xHER3 combination MF3958xMF3178 resulted in
PB4188.
Large scale production, purification and analytical studies of PB4188
[0182] Suspension adapted 293F Freestyle cells were cultivated in Erlenmeyer flasks at a
shaker plateau until a density of 3.0 x 10
6 cells/ml. Cells were seeded in a 4 L erlen flasks at a density of 0.3-0.5 x 10
6 viable cells/ml. The cells were transiently transfected with the individual sterile
DNA: PEl mixture and further cultivated. Seven days after transfection, conditioned
medium containing bispecific antibody was harvested by low-speed centrifugation, 5
minutes 1000 g, followed by high speed centrifugation, 5 minutes at 4000g. Collected
conditioned medium was concentrated over a 5 kDa Satorius hydrosart cassette to about
600 ml and subsequently diafiltrated against 4 L PBS. Antibodies were bound on column
to ∼35 ml MabSelectSure XL (11°C). A-specifically bound proteins were removed by washing
the column in reversed flow mode with 150 ml PBS, 150 ml PBS containing 1 M NaCl,
100 ml PBS. The bound antibodies were eluted using 100 mM citrate pH 3.0 in reversed
flow mode and 5 ml fractions were collected in 10 ml tubes containing 4 ml 1Tris pH
8.0 for neutralization. The eluted antibodies were further purified by gel-filtration
using superdex 200 50/1000. Thepurified antibody was filter-sterilized using a 0.22
µm syringe filter. IgG concentration was determined by OD280 measurement and the protein
concentration was calculated based on the amino acid sequence. Protein was tested
for aggregation (HPSEC), purity (SDS-PAGE, nMS, IEX and IEF). Protein samples were
stored at -80°C.
IgG purification for analytical and xenograft studies.
[0183] Medium scale purifications were performed on an AKTA 100 Explorer using HiTrap MabSelect
Sure columns and HiTrap desalting columns. Samples were loaded at 5 ml/min. The column
was washed with 2 column volumes of PBS. IgG was eluted at pH 3.0 with 0.1 M citrate
buffer. Next the sample was desalted and ended up in a final buffer of PBS pH 7.4.
IgGs were filtered through a 0.45 µM filter (Sartorius). The IgG concentration was
measured using Octet with protein A sensors. Protein was tested for aggregation (HPSEC),
purity (SDS-PAGE, nMS, IEX and IEF). Protein samples were stored at -80°C.
Analytical characteristics of PB4188
[0184] The PB4188 (MF3958xMF3178) was subjected to analysis by HP-SEC and CIEX-HPLC (TSK
gel-STAT 7 µm column, 4.6 mm ID x10 cm L). The analytical profile of PB4188 was in
general consistent with the behavior of normal monospecific IgG1, such as the parental
HER2 arm PG3958 and the anti-RSV monoclonal control antibody (Fig. 7).
Affinity determination
[0185] The monovalent binding affinity of PB4188 and PB3448 for recombinant HER2 and HER3
was determined by SPR (Biacore T100). Biacore™ T100 (GE Healthcare, Uppsala, Sweden)
was used to conduct all experiments described. Sensor surface preparation and interaction
analyses were performed at 25° C. Buffer and Biacore reagents were purchased from
GE Healthcare. ErbB2-Fc and ERbB3-Fc(RND) was coated to the surface of a CM5 sensor
chip in potassium acetate buffer (pH5.5) at the target immobilization level of 500
RU. Running buffer was HBS (hepes-buffered saline): 10 mM HEPES pH 7.4, 150 mM NaCl,
0.005% Tween-20; 0.2µm) filter-sterilized. The bispecific antibodies were diluted
to 100, 50, 20, 10, 1 and 0.1 nM in HBS and run at high (30µl/min) flow rate over
the antigen-coupled surface of the CM5 sensor chip. With the BIA evaluation software,
a curve fitting model for 1:1 monovalent interaction allowed for determination of
the HER2 arms affinities (mono-valent interaction), the affinities of the HER2 arms,
could be determined. Due to the low-off rate of the HER3 arm the affinity could not
be determined. To determine the affinity of the HER3 arm PB4188 was coated to a CM5
sensor chip at the target immobilization level of 500 RU. Her2-Fc and Her3-Fc antigens
were diluted to 100, 50, 20, 10, 1 and 0.1nM in HBS and run at high flow rate (40µl/min)
over the PB4188 surface. To determine the k
on and k
off values, the BIA evaluation software was used in conjunction with a model that takes
into account that a monovalent molecule was coated to the sensor chip surface and
that the ErbB3-Fc antigen was a bivalent molecule. The affinities of PB4188 and PB3448
are shown in Table 10.
PB4188 Affinity determination on cells
[0186] Binding affinities were also determined via steady state cell affinity measurements
using BT-474 and SK-BR-3 cells. Four IgG were analyzed: 1) PB4188 (bispecific HER2xHER3),
containing anti-HER2 antibody 3958 and anti-HER3 antibody 3178; 2) PB9215 (bispecific
HER3xTT), containing anti-HER3 antibody 3178 and anti-TT (tetanus toxoid) antibody
1337; 3) PB9216 (bispecific HER2xTT), containing anti-HER2 antibody 3958 and anti-TT
antibody 1337; 4) Herceptin (monospecific HER2). The IgG were radioactively labeled
with
125I using IODO-GEN® Precoated Iodonation Tubes (Pierce) and associated instructions.
The labeled IgG were diluted to an activity of ∼1-2 x 10
8 cpm/ml in 25 mM Tris-HCl, 0.4 M NaCl, 0.25% BSA, 5 mM EDTA, 0.05% NaN
3. Protein concentrations were determined with the BCA Protein Assay Kit (Pierce).
Flow cytometry analysis of the labeled and non-labeled IgG using BT-474 and SK-BR-3
cells showed no or only minor signs of reduction in binding after labeling. Steady
state cell affinity measurements were performed as follows. Cells were seeded in 96-well
plates and incubated at 4°C with various concentrations of labeled IgG. Unbound radioactivity
was removed after 4 hours and the cell-bound radioactivity was measured using a gamma
well counter. Non-specific binding was measured by adding a receptor-blocking concentration
(100-fold excess) of unlabeled antibody. Each condition was tested in triplicate and
three independent experiments were performed per antibody. K
D values were calculated based on a non-linear regression model that compensates for
non-specific binding, using Prism 6.0d (GraphPad Software). Graphs including fitted
curves are given in Figure 20 for binding of the HER2xHER3 IgG (PB4188) to both cell
lines. K
D data for all 24 assays, including mean values, are given in Table 12. In summary,
the mean KD values as determined using BT-474 and SK-BR-3 cells were 3.2 and 2.0 nM
for HER2xHER3, 3.7 and 1.3 nM for Herceptin, 3.9 and 2.3 nM for HER2xTT, and 0.23
and 0.99 nM for HER3xTT, respectively. Thus PB4188 shows a higher affinity for HER3
compared to HER2 which is in contrast to the HER2xHER3 bispecific molecule MM-111
that targets HER2 with a higher affinity compared to HER3.
Anti-proliferative activity on HER2 amplified breast cancer cells
JIMT-1 in soft agar
[0187] PB3448 and PB4188 were tested for their potency to inhihit the growth of the trastuzumab
resistant JIMT-1 cells in soft agar. To this aim 96 well suspension cell culture plates
were prepared. 100 µL of the soft agar bottom layer (0,6% final concentration in complete
medium) was poured and left to solidify. 50 µL of the soft agar top layer (0,4% final
concentration) containing 10.000 JIMT-1 cells/well were then added on top, solidified
and such 96 well plates incubated overnight at 37°C, 10% CO2. Next day, a negative
control antibody, pertuzumab + trastuzumab (1:1 v/v), PB3448 and PB4188 were added
in DMEM medium in a semi-log titration ranging from 10-0,003 µg/ml. Subsequently,
the assay was incubated in cell culture incubators for 8 days. Finally, the cells
were incubated with Alamar Blue for 3-5 h at 37 °C and fluorescence intensity was
determined (excitation: 560 nm; emission: 590 nm). An example of dose dependent inhibition
of JIMT-1 proliferation by PB3448 and PB4188 is shown. (Figure 8).
BT-474 and SKBR-3 in matrigel
[0188] PB3448 and PB4188 were tested for their potency to inhibit the growth of BT-474 and
SKBR-3 cells. The cells were tested at the company Ocello based in Leiden, the Netherlands
that grows cells in three dimensional matrigel and uses principle component analysis
to distinguish non-treated cells from treated cells. 2000 SK-BR-3 or 2250 BT474 cells
were seeded in 15µl matrigel per well of a 384 well plate (Greiner 781091). The next
day a semi-log titration ranging from 10 to 0.003 µg/ml of antibodies were added in
culture medium in the absence or presence of 5 ng/ml HRG. The test antibodies included
a negative control antibody, pertuzumab + trastuzumab (1:1 v/v), PB3448, PB4188 and
the bispecific anti-EGFRxHER3 two-in-one antibody MEHD7945A. In addition a dose-dependent
titration of HRG was included as a positive control. Each dose was tested in quadruplicate.
Cells were incubated for 7 days in a cell culture incubator at 37°C, 5% CO2. Next,
the cells were fixed and actin cytoskeleton of the cells was stained with phalloidin
and the nuclei are stained with Hoechst. Next, fluorescent images were taken at different
levels through the gel (Z-stack) and the images were superimposed. A broad range of
morphological features were measured (800 in total). Only features that differed between
medium and HRG treatments were selected for analysis. Features that were associated
with growth, mean spheroid area and nuclei per spheroid were most significantly different
between medium and HRG treatments. Both multiparameter and single parameter analyses
were made. For single parameter measurements, t-tests were performed to compare treatments
(HRG or antibody) to medium. P-values for each point were determined. Principal component
analysis (PCA), a method for finding low-dimensional combinations of high-dimensional
data that capture most of the variability was used in relation to antibody concentration,
to plot the data. Figure 9 demonstrates the effect of pertuzumab + trastuzumab (1:1
v/v), PB3448 and PB4188 in the presence of HRG. In both HER2 amplified breast cancer
cell lines PB4188 showed superior activity compared to pertuzumab + trastuzumab, PB3448
and the two-in-one antibody MEHD7945A in the presence of HRG.
Superior anti-proliferative activity of PB4188 in the presence of HRG on HER2 amplified
breast cancer cells
[0189] The activity of PB4188 in the presence of 10 ng/ml HRG on SKBR-3 and BT-474 was compared
to a panel of HER2, HER3 antibodies and combinations thereof. The assay was performed
in matrigel, as described above, and morphological features were analyzed. PCA data
plotted in Figure 10a show the HRG -induced proliferation and branching/invasion of
SKBR-3 cells in matrigel. Figure 10b shows that antibody PB4188 can completely revert
the HRG induced phenotype, whereas the combination of the parental monoclonal antibodies
(PG3958 + PG3178) has no effect. Moreover, PB4188 was far more effective compared
to all anti-HER3 antibodies tested (Figure 10c). In addition, combinations of the
individual anti- HER3 antibodies with trastuzumab (the current standard of care in
metastatic breast cancer (mBC)) were not able to revert the HRG induced phenotype
(Figure 10d). Adding trastuzumab to PB4188 in the presence of HRG reduced the proliferation
and branching/ invasion of SK-BR-3 cells compared to PB4188 alone (Figure 10e).
Superior anti-proliferative activity of PB4188 on HER2 amplified gastric cancer cells
compared to HER2 and HER3 monoclonal antibodies.
[0190] Upregulation of NRG1-β1 is a key resistance mechanism against HER2 targeted therapies
(Wilson, 2012). To evaluate whether upregulation of NRG1-β1 would interfere with the
anti-proliferative potency of PB4188 a panel of antibodies was tested at 100 ng/ml
HRG on the N87 (HER2 amplified) gastric cancer cell line. N87 cells were cultured
in RPMI 1640 supplemented with 10% heat inactivated FBS. For the proliferation assay
subconfluent cell cultures of N87 cells were washed with PBS trypsinized and trypsin
was inactivated by adding culture medium. Cells were washed twice in large volumes
of assay medium (RPMI 1640 medium containing 0.05% BSA and 10 µg/ml Holo Transferrin).
Antibodies were diluted in a semi-log titration that varied from 1-0,0001 µg/ml. Cells
were added at a density of 10000 cells/well in the presence of 100 ng/ml final concentration
of HRG. The cells were cultivated for 3 days at 37°C, 5% CO2, in 95% relative humidity.
Alamar Blue™ (Invitrogen) was added according to the manufacturer's instructions and
incubated for 6 hours at 37°C, 5% CO2, in 95% relative humidity in the dark. Fluorescence
was measured at 550 nm excitation with 590 nm emission wavelength. PB4188 showed superior
activity over anti-HER2 or anti-HER3 monoclonal antibodies (Figure 11).
HER2XHER3 bipecific antibodies induce ADCC
[0191] ADCC activity is an important anti-tumour mechanism of action for therapeutic antibodies
in cancer. Human monoclonal antibodies directed to the HER family of receptors like
cetuximab and trastuzumab induce ADCC. The baseline and enhanced ADCC activity of
PB4188 and PB3448 were determined in validated
in vitro ADCC assays. Trastuzumab and a negative control antibody were included as control
antibodies in the experiment. Whole blood and PBMC fractions were obtained from healthy
donors. Each antibody was tested against the HER2 high (SK-BR-3) and HER2 low (MCF-7)
expressing target cells. Target cells were loaded with
51Cr (Amersham) and opsonized with the indicated concentrations of antibody. Whole-blood
or PBMC fraction were used as effector cells in a 200 µL reaction in RPMI 1640 + 10%
heat inactivated FCS. Cells were incubated together for 4 h, and lysis was estimated
by measuring radioactivity in the supernatant using a γ-scintillator. Percentage of
specific lysis was calculated as follows: (experimental cpm - basal cpm) / (maximal
cpm - basal cpm) × 100, with maximal lysis determined in the presence of 5% Triton
X-100 and basal lysis in the absence of antibody and effectors. As shown in Figure
12 bispecific antibody PB3448 showed similar ADCC activity compared to the combination
pertuzumab + trastuzumab. Bispecific antibody PB4188 was effective at high antibody
concentrations (10 µg/ml).
HER2XHER3 bipecific antibodies show higher ADCC compared to the combination of parental
antibodies
[0192] In a different ADCC setup, the ADCC Reporter Bioassay (Promega) was used. The bioassay
uses engineered Jurkat cells stably expressing the FcγRIIIa receptor, V158 (high affinity)
or F158 (low affinity) variant, and an NFAT response element driving expression of
firefly luciferase. The assay was validated by comparing data obtained with the ADCC
Reporter Bioassay to the classical
51Cr release assay. The ADCC assays were performed using the Promega ADCC Bioassay kit
using 384 white well plates. In this experimental setup SKBR-3 cells were plated at
a density of 1000 cells/well in 30 µl assay medium (RPMI with 4% low IgG serum) 20-24H
before the bioassay. The next day, the culture medium was removed. Next, a serial
dilution of antibodies, PB4188 and its parental anti-HER2 PG3958 and anti-HER3 PG3178
as well as the combination thereof was generated in duplo. 10 µl antibody dilutions
were added to the wells. The starting concentration of the antibody was 10 µg/ml and
a 10 points semi-log fold serial dilution was generated to provide a full dose-response
curve. Finally, 5 µl of ADCC Bioassay effector cells (15000 cells/well, V158) were
added. The cells were incubated for 6H at 37 °C. Next, 15 µl BIO-Glo luciferase substrate
was added and 5 minutes later luminescence was detected in a plate reader. The obtained
data are shown in Figure 13. The PB4188 bispecific anti-HER2xHER3 antibodies showed
a higher ADCC potentency compared to the parental HER2 and HER3 monoclonals or a combination
thereof.
ADCC enhancement of PB4188
[0193] ADCC activity can be enhanced by different techniques, one of them being the removal
of fucose. Removal of fucose has resulted in increased anti-tumour activity in several
in vivo models [Junttila, 2010]. To maximize PB4188 activity, afucosylation technology
was applied (Cheng Liu and Andreia Lee. ADCC Enhancement Technologies for Next Generation
Therapeutic Antibody. Antibody therapeutics -Trends in Bio/Pharmaceutical Industry
2009 [13-17]), thereby preventing fucosylation of the N-linked carbohydrate structure
in the Fc region. The ADCC potency of afucosylated PB4188 compared to the wildtype
PB4188 was determined in an ADCC
51Cr release assay using HER2 low expressing cells (MCF-7) and HER2 amplified cells
(SK-BR-3). Both antibodies were applied in a serial dilution and a negative control
antibody and trastuzumab were included in the assay. Figure 14 shows the increase
in ADCC potency of afucosylated PB4188 compared to the wild type version and/or trastuzumab
in both high and low HER2 expressing cells.
Afucosylated PB4188 shows superior ADCC activity with low affinity FcγRIII receptors
[0194] Afucosylated PB4188 activity was tested on ADCC reporter cells containing either
the V158 (high affinity) FcγRIIIa receptor variant or the F158 (low affinity) FcγRIIIa
receptor variant. A serial titration of antibody, i.e. control antibody, trastuzumab
and afucosylated PB4188, was added in combination with ADCC reporter cells harbouring
the different FcγRIIIa variants to adherent SK-BR-3 cells. ADCC activity was measured
by measuring luciferase activity. Afucosylated PB4188 showed equal activity compared
to trastuzumab in combination with the high affinity V158 FcγRIIIa receptor variant.
In contrast afucosylated PB4188 displayed superior ADCC activity compared to trastuzumab
in combination with the low affinity F158 FcγRIIIa receptor variant. (Figure 15)
JIMT-1 xenograft study
[0195] JIMT-1 human breast carcinoma cells were grown in DMEM containing 10% fetal bovine
serum, 100 units/mL penicillin G sodium, 100 µg/mL streptomycin sulfate, 25 µg/mL
gentamicin, and 2 mM glutamine until the time of implantation. At the day of implantation
JIMT-1 breast cells were harvested during log phase growth and resuspended in cold
PBS. Female CB.17 SCID mice (Charles River) were 8 weeks old on Day 1 of the study
and had a body weight range of 16.5 to 20.7 g. Each mouse was injected subcutaneously
in the right flank with 5 x10
6 tumor cells (0.2 mL cell suspension). The tumors were measured with a caliper in
two dimensions to monitor size as the mean volume twice per week. Once tumors had
reached approximately 100-150 mm
3 in size animals were enrolled in the efficacy study. Outlier animals-tumor volume
- were removed and the mice were randomly distributed into groups of 10 mice each.
Mice were injected once weekly (antibody) or daily (lapatinib) for a period of four
weeks. Details of the treatment groups are depicted in Table 11.
[0196] Tumor sizes were measured weekly by caliper measurement. The efficacy study revealed
that PB4188 at both dosing schedules was equal effective and more potent than lapatinib
or the combination pertuzumab and trastuzumab. The data are shown in Figures 17 and
18.
PB4188 can overcome HRG mediated resistance
[0197] Upregulation of NRG1-β1 is a key resistance mechanism against HER2 targeted therapies
(Wilson, 2012). PB4188 was tested in comparison to its parental anti-HER3 monoclonal
antibody PG3178 in a serial titration in the presence of an increasing concentration
of HRG (NRG1-β1 EGF). To this aim N87 cells were cultured in RPMI 1640 supplemented
with 10% heat inactivated FBS. For the proliferation assay subconfluent cell cultures
of N87 cells were washed with PBS trypsinized and trypsin was inactivated by adding
culture medium. Cells were washed twice in large volumes of assay medium (RPMI 1640
medium containing 0.05% BSA and 10 µg/ml Holo Transferrin). Antibodies were diluted
in a semi-log titration ranging from 1 to 0.0001 µg/ml. Cells were added at a density
of 10000 cells/well in the presence an increasing concentration of HRG (0.04-39,5
nM). The cells were cultivated for 3 days at 37°C, 5% CO2, in 95% relative humidity.
Alamar Blue™ (Invitrogen) was added according to the manufacturer's instructions and
incubated for 6 hours at 37°C, 5% CO2, in 95% relative humidity in the dark. Fluorescence
was measured at 550 nm excitation with 590 nm emission wavelength. PB4188 showed superior
activity compared to the parental anti-HER3 monoclonal antibody (Figure 19).
Hence, in case of an escape mechanism, such as for instance upregulation of NRG1-β1,
a bispecific antibody according to the invention is preferred.
Epitope mapping of HER2/HER3 specific IgGs
Shotgun mutagenesis experiments
[0198] Alanine scanning mutagenesis was used to map the epitopes of PG3958 and PG3178 for
HER2 and respectively HER3. In the shotgun mutagenesis assay, clones are generated
whereby each amino acid residue of the HER2/HER3 extracellular domain (ECD) is substituted
for alanine. Next, a cell array was prepared by reverse transfection (patent
US2011/0077163A1). Therefore, DNA of each clone was mixed with lipofectamin and the mixture was placed
in a dedicated well of a 384 well plate. HEK293T cells were added to each well and
expression of protein was measured 24H later. Subsequently, the reactivity of antibodies
was measured by immunofluorescent staining leading to binding maps and identification
of critical residues for antibody binding. Expression levels of the HER2 and HER3
ECD constructs were verified by FACS analysis using commercially available monoclonal
antibodies (R&D mAb 1129 (HER2) and R&D mAb 66223 (HER3)).
HER2
[0199] Binding of monovalent PG3958 Fab to HER2 ECD mutants was tested at a concentration
of 0.25 µg/ml in the assay and stringent washing conditions were used (pH 9.0, 350
mM NaCl). This resulted in the identification of three 'critical' residues (T144,
R166, R181) in HER2 that showed less than 35% residual binding of the PG3958 Fab compared
to WT HER2 while retaining control mAb binding. Two residues (P172, G179) that are
positioned near the critical residues in the HER2 structure showed significant, but
less severe loss of binding and were designated 'secondary critical' residues (Table
13 and Figure 21A). All these surface-exposed residues are located in Domain I of
HER2 and together they form a discontinuous patch on the surface of the HER2 molecule.
Confirmation experiments HER2 epitope
[0200] Constructs encoding Wildtype (WT) HER2 ECD and the HER2 ECD variants listed in Table
13 were expressed in CHO-K1 cells. Three Domain I residues that are surface exposed
and structurally near the determined critical residues were selected for further analysis.
T164, S180 and D143 point mutations to tyrosine were generated in the HER2 ECD construct
and the resulting constructs were also expressed in CHO-K1. The L159A HER2 ECD variant
was expressed in CHO-K1 cells as control sample.
The bispecific PG3958xTT antibody tested for binding to the ECD variants in a FACS
titration experiment. The anti-HER2 antibody trastuzumab which binds domain IV of
HER2 was used to verify HER2 ECD expression at the cell surface. Mean MFI values were
plotted and for each curve the AUC was calculated using GraphPad Prism 5 software.
WT HER2 binding was used to normalize the data. The FACS data showed that in addition
to T144A, R166A, R181A, P172A, G179A the mutations T164Y and S180Y resulted in significant
reduction in binding of the PG3958xTT antibody (Figure 22). The D143Y mutation resulted
in severe loss of expression as demonstrated by the decreased binding of the control
mAb, so its potential role in the PG3958 epitope could not be determined.
HER3
[0201] Binding analysis of PG3178 IgG at 0.25 µg/ml to HER3 ECD mutants in FACS resulted
in the identification of two so-called 'critical' residues (F409, R426) for which
mutation to alanine caused substantial loss of binding compared to WT HER3, while
binding of the control mAb was retained (Table 14 and Figure 23). Both residues are
located in Domain III of HER3 and spatially distant. Moreover, F409 is buried in the
HER3 hydrophobic core, which makes it unlikely to be part of the PG3178 epitope.
Confirmation experiments HER3 epitope
[0202] CHO-K1 cells were transfected with HER3 ECD mutation constructs (listed in Table
14), WT HER3 ECD and two control constructs (H407A and Y424A). PG3178 binding to the
HER3 ECD variants was tested in a FACS titration experiment. Two control antibodies,
binding Domain I (MM-121) and Domain III (MEHD7945A) of HER3 were included to verify
HER3 ECD expression on the cell surface. Mean MFI values were plotted and for each
curve the AUC was calculated using GraphPad Prism 5 software. WT HER3 binding was
used to normalize the data. The R426A mutation was shown to be critical for PG3178
binding whereas the binding to F409A could not be confirmed due to loss of cell surface
expression (Figure 24).
PB4188 activity on cardiomyocytes in vitro
[0203] HER2 is involved in growth, repair, and survival of adult cardiomyocytes as part
of a signalling network that involves the heregulin receptor complex HER2:HER4. Cardiotoxicity
is a known risk factor in HER2 targeting and the frequency of complications is increased
when trastuzumab is used in conjunction with anthracyclines thereby inducing cardiac
stress. A model system based on human stem cell derived cardiomyocytes was used to
test the potential toxicity of PB4188 and benchmark it against trastuzumab and the
combination of trastuzumab and pertuzumab in the presence of the anthracyclin doxorubicin.
Human stem cell derived cardiomyocytes (Pluriomics BV) were seeded at a concentration
of 20.000 well in white flat-bottom assay plates (corning 655098). On day 5 of culture
the medium was replaced for glucose and galactose free culture medium supplemented
with 10ng/ml HRG. On day 7 test antibodies were added in combination with doxorubicin
(3 µM). Cell viability was assayed on day 9 using the Promega Cell titer Glo assay.
The monospecific antibodies were tested at single concentrations of 68 nM whereas
PB4188 was tested at three concentrations in the presence of 3 µM doxorubicin. Figure
25 shows that the viability of the cardiomyocyte was unaffected by all PB4188 concentrations
tested. In contrast, trastuzumab and the combination of trastuzumab and pertuzumab
both reduced cardiomyocyte cell viability.
PB4188 binding to cells with different HER2 levels
[0204] The binding of PB4188 in comparison to trastuzumab and the HER3 antibody U1-59 was
analyzed by FACS on breast and gastric cancer cell lines expressing different levels
of HER2. Cells were considered HER2+++ if they express millions of HER2 copies and/or
are HER2 gene amplified. The following cell lines were used: MCF-7 (HER 2 +); MDA-MB-468
(HER2 +, MKN-45 (HER2 +), MDA-MB-175 (HER2+), MDA-MB-453 (HER2 ++), MDA-MB-361(HER2
++), ZR-75-1(HER2 ++), JIMT-1 (HER2+++), BT-474 (HER2+++), SKBR-3 (HER2+++), SK-OV-3
(HER2+++), N87 (HER2+++). Cells of an exponentially grown culture were harvested by
trypsin and diluted to 10
6 cells/ml in FACS buffer (PBS/0.5%BSA/0.5mM EDTA). 1-2 10
5 cells were added to each well in a U-bottom 96 well plate. Cells were centrifuged
for 2 minutes at 300 g at 4°C. Supernatant was discarded by inverting plate(s) above,
followed by flicking once. 50 µl of each IgG sample was added in a serial dilution
from 3.16 ng- 10 µg/ml and incubated for 1H on ice. Cells were centrifuged once, supernatant
was removed and cells were washed twice with FACS buffer. 50 µl diluted 1:100 mouse
anti human IgG gamma PE (Invitrogen) was added and incubated for 30-60 minutes on
ice in the dark. Cells were centrifuged once, supernatant was removed and cells were
washed twice with FACS buffer. Cells were analysed on a FACSCanto Flow cytometer in
a HTS setting. The quantity of antibody bound was was assessed by median fluorescence.
Data were plotted and the area under the curve (AUC, a cumulative measurement of the
median fluorescence intensity) was determined for each antibody per cell line tested
(Figure 26).
From this experiment it is concluded that PB4188 has a higher binding affinity for
HER2+++ cells, HER++ cells and HER+ cells as compared to trastuzumab.
Simultaneous binding with trastuzumab
PB4188 and trastuzumab do not compete for binding to HER2
[0205] PB4188 binds domain I of the HER2 protein whereas the binding epitope of trastuzumab
is localized in domain IV. To demonstrate that both antibodies do not compete for
HER2 binding, a binding assay with HER2 amplified SKBR-3 breast cells was performed.
First unlabeled antibody was allowed to bind SKBR-3 at saturating concentrations.
Next FITC-labeled PB4188 was added in a titration range and fluorescence was measured
by FACS. Figure 27 demonstrates that PB4188
FITC bound as effectively to cells in the presence of trastuzumab or the negative control.
Pre-incubation of SKBR-3 cells with PB4188 prevented PB4188
FITC from binding. Thus, trastuzumab and PB4188 do not compete for binding to HER2
Targeting domain I of HER2 by a HER2xHER3 bispecific molecule can overcome Heregulin
resistance
[0206] To test whether the orientation of PB4188 on the HER2xHER3 dimer was preferred for
inhibiting cell proliferation under HRG stress conditions, bispecific antibodies were
generated composed of the 3178 HER3 arm and HER2 arms targeting either domain I, II,
III or IV. Two HER2xHER3 bispecific antibodies were generated for each of the HER2
domains I-IV. The HER2 arms included: MF3958 and MF3003 targeting domain I; MF2889
and MF2913 targeting domain II; MF1847 and MF3001 targeting domain III and MF1849
and MF1898 targeting domain IV. Each HER2 Fab arm was combined with the 3178 HER3
Fab arm and tested for their potency to inhibit cell proliferation in the presence
of high concentrations of heregulin. Antibody titrations were performed on HER2 low
expressing MCF-7 cells and the HER2 overexpresssing N87 and SK-BR-3 cells. Subconfluent
cell cultures of N87, SK-BR-3, and MCF-7 cells were washed with PBS trypsinized and
trypsin was inactivated by adding culture medium. Cells were washed twice in large
volumes of assay medium (RPMI 1640 medium containing 0.05% BSA and 10 µg/ml Holo Transferrin).
Antibodies were diluted in a semi-log titration. Cells were added at a density of
10000 cells/well (N87, SKB-BR-3) and 5000 cells/well MCF-7 in the presence the experimentally
defined stress concentration of HRG (10nM SK-BR-3, 100nM N87 and MCF-7). The cells
were cultivated for 3 - 4 days at 37°C, 5% CO2, in 95% relative humidity. Alamar BlueTM
(Invitrogen) was added to assess the proliferation. Absorbance was measured at 550nm
excitation with 590 nm emission wave length. In all assays tested, only the bispecific
antibodies targeting domain I of HER2 were able to inhibit proliferation in the presence
of a high heregulin concentration (Figure 28).
Drug combinations with PB4188 in vitro.
[0207] To investigate the possibility to combine PB4188 with small molecule drugs PB4188
was combined with drugs interfering at different levels of the PI3K or MAPK pathway.
Moreover, combination with chemotherapeutic drugs and cyclin inhibitors were tested.
Combinations were tested on HER2 overexpressing cells growing in the presence of HRG
in matrigel (SK-BR-3 and BT-474) or in the presence of HRG stress concentrations (N87
and SK-BR-3 as described in proliferation assays). The inhibitory effect of drug combinations
was tested by imaging or by measuring proliferation using Alamar Blue as described
herein before. First, the EC20 PB4188 and drugs tested was determined. Next, checkerboard
titrations were performed with PB4188 and the drugs. Synergies were observed in all
cell lines tested with tyrosine kinase inhibitors (afatinib, lapatinib, neratinib),
the PI3Ka inhibitor BYL719, the Akt inhibitor MK-2206, the mTOR inhibitor everolimus,
the Src inhibitor saracatinib, the microtubuli disrupting drug paclitaxel, and the
HDAC inhibitor vorinostat (which is misspelled in Figure 40 as "voronistat"). Figure
29 shows an example of the synergistic combination of PB4188 with lapatinib on SKBR-3
cells grown in matrigel resulting in morphological changes and reduction of cell growth.
The extent of growth inhibition obtained with each combination was calculated. Potency
shifting can be shown using isobolograms (Greco et al 1995) which shows how much less
drug is required in a combination to achieve a desired level when compared to the
single agent required to reach that effect. The inhibition values of the combination
experiments were used by CHALICE™ Analyzer software to generate the isobolograms.
Isobolograms of the different drug combinations on HER2 amplified cells are shown
in figure 40. Isobologram analysis indicated that PB4188 displayed synergistic drug
combinations with afatinib, lapatinib, neratinib, BYL719 , MK-2206, everolimus, saracatinib,
vorinostat and paclitaxel.
These data demonstrate that drugs acting on the PI3K pathway are particular effective
in combination with PB4188. In addition, combinations with Tyrosine Kinase Inhibitors
are effective. Moreover, a combination with the growth and migration/invasion drug
saracatinib can be favourable in the metastatic setting.
PB4188 In vitro inhibition of phosphorylation
[0208] Cells of an exponentially grown culture were harvested and seeded in 6 well plates
(3.75 x10
6 cells for N87 and 1.5x10
6 cells for SKBR-3) in starvation medium (N87 cells: RPMI-1640, 0.05% BSA, 10µg/ml
Holo-transferrin; SKBR-3 cells: DMEM/F-12, 2 mM L-glutamine, 0.05% BSA, 10µg/ml Holo-transferrin)
and incubated incubated overnight at 37°C, 5% CO2, in 95% relative humidity. The next
day, antibodies were added to a final concentration of 5 nM and cells were incubated
for one hour at 37°C, 5% CO2, in 95% relative humidity. HRG was then added to a final
concentration of 100 ng/ml. After 1, 3, 6 or 24 hours at 37°C, 5% CO2, in 95% relative
humidity, plates were placed on ice, cells were washed twice with cold PBS. Subsequently
0.3 ml ice-cold lysis buffer was added (Cell signaling RTK # 9803 or IC # 7018) and
cells were lysed for a minimum of 30 minutes on ice. Next, protein concentrations
were measured using BCA (Pierce #23235). Protein concentrations were adjusted to 2
mg/ml with lysis buffer. Next, lysates were applied to PathScan RTK Signaling Antibody
Arrays (Cell signaling #7949) or PathScan Intracellular Signaling Antibody Arrays.
All incubations were performed with sealed wells on an orbital shaker at room temperature.
Lysates (75 µl) were diluted 2 times to 0.8 mg/ml concentration with 75 µl Array Diluent
Buffer supplemented with protease inhibitor cocktail and kept on ice. Array wells
were blocked with 100 µl Array block buffer for 15 minutes. Block buffer was removed
and Lysates were applied to the wells and allowed to incubate for 2 hours. Lysate
was aspirated and wells were washed 4 times with 100 µl Wash buffer. Next, 100 µl
detection antibody cocktail was added per well and incubated for 1 hour. Antibody
cocktail was aspirated and wells were washed 4 times with 100 µl Wash buffer. 75 µl
Dylight80™ Streptavidin was added to each well. Dylight80™ Streptavidin was aspirated
and wells were washed 4 times with 100 µl Wash buffer. The multi-gasket was removed
and slides were washed for 10 seconds in 10 ml in deionized water. Slides were allowed
to dry and processed for imaging on an Odysee®Clx. Spot fluorescence intensity was
calculated using Image Studio software.
[0209] In N87 and SKBR-3, PB4188 completely blocks AKT phosphorylation during the first
6H of incubation, in contrast to the combination of trastuzumab + pertuzumab. In addition
a strong inhibition is observed in ERK and S6 phosphorylation in contrast to the combination
of trastuzumab + pertuzumab. PB4188 does not inhibit phosphorylation of HER2 (Figure
30)
Western blot analyses
[0210] To verify the phosphorylation inhibition observed in the RTK and intracellular Pathscan
arrays Western blots were performed of cells treated with PB4188, the combination
pertuzumab and trastuzumab and a control antibody in the presence of HRG stress concentrations.
Cells of an exponentially grown culture were harvested and seeded in 10 cm dishes
(20x10
6 cells for N87 and 7x10
6 cells for SKBR-3) in starvation medium (N87 cells: RPMI-1640, 0.05% BSA, 10µg/ml
Holo-transferrin; SKBR-3 cells: DMEM/F-12, 2 mM L-glutamine, 0.05% BSA, 10µg/ml Holo-transferrin).
The next day, antibodies were added to a final concentration of 5 nM and cells were
incubated for one hour. HRG was then added to a final concentration of 100 ng/ml.
After 1, 3, 6 or 24 hours, dishes were placed on ice, cells were washed twice with
cold PBS, transferred to Eppendorf tubes and lysed with 250 µl of RIPA lysis buffer
(20 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM Na2EDTA, 1 mM EGTA, 1% NP-40, 1% sodium
deoxycholate, 0.1% SDS, 2.5 mM sodium pyrophosphate, 1 mM beta-glycerophosphate, 1
mM Na3VO4, 1 µg/ml leupeptin). Lysis was allowed to proceed for 30 minutes on ice.
Cell lysates were centrifuged and supernatants were collected in new Eppendorf tubes.
Protein concentration was determined using the BCA method (Pierce). 30 µg of the lysate
was separated on a 4-12 % Bis-Tris NuPage gel (Invitrogen) and proteins on the gel
were transferred to a nitrocellulose membrane. Membranes were blocked for one hour
with TBS-T containing 5 % BSA and stained with the indicated antibodies according
to the manufacturer's instructions (Cell Signaling Technology). Membranes were then
incubated with a HRP-conjugated secondary antibody, incubated with ECL substrate and
subjected to autoradiography using X-ray films (Amersham). All detection antibodies
were from Cell Signaling Technology: Phospho-Akt (ser 473) #4060, Total Akt #4691,
Phospho-HER2 (Tyr 1221/1222) #2243, Total HER2 #2242, Phospho-HER3 (Tyr 1289) #4791,
Total HER3 #4754, Phospho-ERK1/2 (Thr 202/Tyr 204) #4377, Total ERK1/2 #4695, Phospho-S6
RP (Ser 235/236) #2211, Total S6 RP #2217, Goat anti- rabbit HRP-linked #7074. The
results show that PB4188 shows a prolonged inhibition of HER3 phosphorylation resulting
in the inhibition of both the MAPK and PI3 kinase pathway with a profound effect on
AKT phosphorylation inhibition (Figure 31).
PB4188 In vivo pharmacodynamics
Phosphoprotein analysis by Luminex
[0211] Tumors (100mm
3) of JIMT-1 transplanted mice treated with 2 doses of PB4188 and 4 doses of PB4188
were removed 24H after dosing. Tumors were flash-frozen and processed to powder. Tumor
lysates were prepared to a concentration of 50 mg tumor/mL using cold BioRad Lysis
Buffer (supplemented with 0.4% BioRad Factor 1, 0.2% BioRad Factor 2, and 2 mM PMSF)
to the frozen powder samples, incubated at 4°C on a rocker for 60 minutes to ensure
complete lysis. The samples were centrifuged at 4°C for 10 minutes at 16000 x g, and
aliquoted. Total protein was determined using the Biorad DC Protein Assay reagents
according to manufacturer's instructions. Luminex Assay: The JIMT-1 tumor lysate samples
were processed and analyzed for: Total AKT AKT(Ser473) and AKT(Thr308using commercially
available Luminex kits from Millipore (Cat # 48-618MAG (Lot No. 2532050), 46-645MAG
(Lot No. 46645M-1K). Each sample was tested in duplicate. Dilutions were prepared
in sample diluent to load a target of approximately 25 µg protein per well for all
total and phosphorylated analyte determinations. The Millipore kits were used according
to the manufacturer's specifications.
[0212] Tumors treated with PB4188 showed an increase in Akt expression in comparison to
untreated tumors. Phosphorylation of AKT was completely inhibited by PB4188 both after
a two-weekly dose as after a four-weekly dose (Figure 32).
Phosphoprotein analysis by VeraTag assay
[0213] Tumors (100mm
3 or 400 mm
3) of JIMT-1 transplanted mice treated with 1 or 2 doses doses of PB4188 were removed
and fixed in 10% neutral buffered formalin. Mice bearing 100mm
3 tumors were sacrificed 24H after a single PB4188 dose (25 mg/kg) whereas mice bearing
400mm
3 tumors received 2 weekly dosis of 25 mg/kg and were sacrificed 4H after dosing. Next,
samples were paraffin-embedded. Sections of 7 um in thickness were sliced with a microtome
(LEICA) and placed on positively charged glass slides (VWR) with serial number labeled.
Slides were air-dried for 30 min and then baked in a heated oven set at 60° C. Next
samples were processed for different VeraTag analysis. Total HER2 analysis (HT2) according
to
U.S. Patent Appl. No. 12/340,436, total HER3 analysis (H3T) according to
U.S. Patent No. 8,349,574;
U.S. Patent Appl. No. 2013/0071859 and finally HER2-HER3 heterodimer (H23D), HER3pY1289 (H3pY1289) and HER3-PI3 kinase
(H3PI3K) according to Int'l Patent Appl. No.
PCT/US2014/033208. In both dosing regimens a significant PB4188 mediated reduction in HER2:HER3 dimers
became apparent in comparison to untreated controls. There was no difference observed
in total HER2, HER3 or phosphorylated HER3 between PB4188 treated tumors and controls.
Tumors that were analyzed 4H after PB4188 dosing showed a significant reduction in
HER3-p85 (PI3K) compared with untreated controls.
PB4188 reduces cell cycle progression in HRG-stimulated cancer cells
[0214] The ability of PB4188 to influence cell cycle progression was investigated in cancer
cell lines expressing various protein levels of HER2. HER2+ (MCF-7), HER2+++ (JIMT-1,
SK-BR-3 and N87 cells) cells were seeded in assay medium (MCF-7 cells: RPMI-1640,
0.05 % BSA, 10 µg/ml Holo-transferrin, 1 mM sodium pyruvate, MEM NEAA; JIMT-1: DMEM,
0.05 % BSA, 10 µg/ml Holo-transferrin; SK-BR-3 cells: DMEM/F-12, 2 mM L-glutamine,
0.05 % BSA, 10 µg/ml Holo-transferrin; N87 cells: RPMI-1640, 0.05 % BSA, 10 µg/ml
Holo-transferrin). Per well of 24-well plate, 300.000 MCF-7, or 400.000 N87 or 150.000
SK-BR-3 or 150.000 JIMT-1 or cells seeded in 1 ml assay medium and incubated overnight
at 37°C, 5% CO2, in 95% relative humidity. The next day, PB4188 or pertuzumab + trastuzumab
or PG3178 or PG1337 were added to the cells in the presence of a final concentration
of HRG of 1 or 100 ng/ml. After 24 hrs (for JIMT-1, N87 or SK-BR-3 cells) or 48 hrs
(for MCF-7 cells) incubation at 37°C, 5% CO2, in 95% relative humidity, cells were
supplemented with EdU (10 µM final concentration) for 2 hrs before being harvested
and stained for EdU incorporation using the Click-iT EdU AlexaFluor488 kit according
to the manufacturer instructions (LifeTechnologies, cat.no. C10425). At least 30 min
before analyzing the cells by flow cytometry on FACSCanto, cells were incubated with
200 nM FxCycle far red dye (LifeTechnologies, cat.no. F10348) and 100 µg/ml RNAse
A (LifeTechnologies, cat.no. 12091-039). Events were acquired in the AlexFluor488
channel (for EdU detection) and in the APC channel (for total DNA stain with the FxCycle
dye). Data were analyzed by gating single cells on a FSC-width vs FSC-height scatter
plot, and subgating the G0/G1, S and G2M phases of the cell cycle on an APC vs AlexaFluor488
scatter plot, as EdU
negAPC
low, EdU
pos and EdU
negAPC
high populations, respectively.
Data are represented as the proliferation index calculated by dividing the percentage
of cells in the S and G2/M phases by the percentage of cells in the G0/G1 phase. Figure
34 shows that PB4188 is consistently more potent than PG3178 or pertuzumab + trastuzumab
in inhibiting proliferation induced by a standard (1 ng/ml) or a high (100 ng/ml)
concentration of HRG. At high concentrations of HRG PB4188 still inhibits the cell
cycle progression.
PB4188 induces receptor internalization
[0215] Internalization pattern of antibodies was measured using pH-sensitive dyes. This
has been described in the art in
WO2013134686 A1 where such dyes, when coupled to an antibody, display an increased fluorescence signal
when exposed to lower pH. This occurs when the dye-coupled antibodies internalize
from the surface of target cells into mildly acidic endosomes (pH 6-6.5) to acidic
lysosomes (pH lower than 5.5). To investigate whether PB4188 internalizes in cancer
cells, the antibody was coupled to the pH sensor dye with succinimidyl ester reactive
group (Promega, cat.no. CS1783A01) according to the manufacturer's instructions. As
comparators, anti-HER2 (trastuzumab, pertuzumab, PG3958), anti-HER3 (PG3178, #Ab6)
and negative control (anti-tetanus toxin, PG1337) dye labeled antibodies were included.
HER2-overexpressing SKBR-3 and N87 cancer cells of an exponentially grown culture
were harvested and seeded on 96 well plates (15x10
3 cells per well) in 100 µl assay medium (N87 cells: RPMI-1640, 0.05 % BSA, 10 µg/ml
Holo-transferrin; SKBR-3 cells: DMEM/F-12, 2 mM L-glutamine, 0.05 % BSA, 10 µg/ml
Holo-transferrin) containing 1 ng/ml HRG and incubated overnight at 37°C, 5% CO2,
in 95% relative humidity. The next day, 20 µl pH-sensitive dye-labelled antibodies
were added to reach a final concentration of 100 nM and cells were incubated overnight
at 37°C, 5% CO2, in 95% relative humidity. The next day, cells were harvested by collecting
non-adherent cells and trypsinizing adherent cells. After washing cells with FACS
buffer (PBS 0.5% BSA 0.1% sodium azide), cells were stained with APC-labelled anti-human
IgG (Jackson Immunoresearch, cat.no. 109-136-098, 1:100 dilution). Cells were analyzed
by flow cytometry on FACSCanto (BD Biosciences) measuring median fluorescence intensities
(MFI) of the PE and APC channels to determine internalization and residual surface
binding of antibodies, respectively. Data shown in Figure 35 show that PB4188 internalizes
to the same extend as trastuzumab whereas the combination trastuzumab + pertuzumab
leads to enhanced internalization. The combination of trastuzumab + pertuzumab reduces
the ADCC in comparison to trastuzumab alone (Figure 36). It is therefore anticipated
that the level of PB4188 internalization leaves the ADCC potency unaffected.
Generation and characterization of anti-HER3 antibody 3178 variants
[0216] Variants of anti-HER3 antibody MF3178 were designed with the aim to improve antibody
properties. Mutations were introduced in the VH gene framework region 1 (FR1), complementarity
determining region 1 (CDR1), FR2, CDR2 and/or FR3, while CDR3 and FR4 were not modified.
The design included, but was not limited to, mutations that were introduced to remove
post-translational modification (PTM) motifs (e.g. by changing the deamidation motif
NS to NQ), to reduce surface hydrophobicity (e.g. by changing I to T) or to increase
the iso-electric point (pI; e.g. by changing Q to K). All 20 variants (See Figure
37) were expressed as bispecific antibody combined with a Tetanus Toxoid (TT) arm
and tested in the MCF-7 functional assay and all 20 variants had a similar potency
as the MF3178 antibody in this format. All 20 variants were also tested in this format
in FACS in a titration for binding to MCF-7 and all variants had very similar binding
profiles suggesting that the affinities of all variants are similar. Three lead variants
MF6058, MF6061 and MF6065 were selected for further experiments that contain ten,
three and seven amino acid mutations, respectively (see sequences in Figure 16E and
Figure 37). The corresponding monospecific IgG1 PG6058, PG6061 and PG6065 were produced
and purified at large scale. As shown in Figure 38, the inhibitory activity of the
three variants in the HRG-dependent N87 cell line proliferation assay is similar to
that of PG3178. The CIEX-HPLC profile of the three variants was similar to that of
PG3178 with respect to charge heterogeneity as well as peak width and symmetry, as
shown in Figure 39. The retention time (tR) of the main peak correlated roughly with
the pI of the antibodies, i.e. higher pI resulted in longer retention time. In the
design of bispecific antibodies or mixtures of antibodies, selecting antibody variants
with optimal tR is valuable since purification of the desired antibody components
using CIEX can be facilitated.
Serum titers of the different cohorts of immunized mice as determined by FACS. D=day
of antibody titer determination. Table 1: response against HER2. Table 2: response
against HER3. Cell lines used are indicated (MCF7, SKBR3, BT474). The different mice
are in the columns
[0217]
Table 9
| Functional activity of lead HER2 x HER3 bispecific antibodies (indicated using the
PB prefix; each PB comprises an HER2 arm and an HER3 arm as indicated in the table)
compared to comparator antibodies in the HRG dependent MCF-7 and BxPC3 assays. Based
on binding profiles using chimeric constructs HER2 and HER3 antibodies could be separated
over different bins. For HER2 antibodies the domains all antibodies except PG2926
could be mapped to domains I, III or IV. |
| Name |
HER2 arm |
HER2 domain |
HER3 arm |
HER3 bin |
MCF-7 |
BxPC3 |
| |
|
|
|
|
IC50 (pM) |
% Inhibition |
| PB3441 |
2926 |
NA |
3178 |
5 |
51,7 |
-24% |
| PB3443 |
2930 |
III |
3178 |
5 |
136 |
-31% |
| PB3448 |
1849 |
IV |
3178 |
5 |
371 |
-22% |
| PB3565 |
2973 |
I |
3178 |
5 |
30,9 |
-19% |
| PB3566 |
3004 |
I |
3178 |
5 |
7,9 |
-20% |
| PB3567 |
2971 |
I |
3178 |
5 |
46,5 |
-17% |
| PB3709 |
3025 |
I |
3178 |
5 |
34,5 |
-19% |
| PB3710 |
2916 |
I |
3178 |
5 |
74,2 |
-19% |
| PB3883 |
2971 |
I |
3176 |
5 |
113 |
-19% |
| PB3986 |
3025 |
I |
3163 |
5 |
30,7 |
-21% |
| PB3990 |
2971 |
I |
3163 |
5 |
13 |
-18% |
| PB4011 |
2971 |
I |
3099 |
3 |
40,2 |
ND |
| PB3437 |
3031 |
I |
3178 |
5 |
14 |
-10% |
| PG3178 |
NA |
NA |
3178 |
5 |
139 |
-17% |
| #Ab6 |
|
|
|
|
504 |
-7% |
| trastuz. + pertuz. |
|
|
|
|
352 |
ND |
| trastuzumab |
|
|
|
|
500 |
-3% |
Table 10
| Monovalent binding affinities of PB4188 and PB3448 for HER2 and HER3 as measured in
biacore. Both bispecific antibodies share the same HER3 arm. ND, not done. |
| PB |
KD on Her2 (nM) |
KD on Her3 (nM) |
| PB3448 |
5.4* |
ND |
| PB4188 |
0.16* |
3.9 |
Table 11
| JIMT-1 xenograft study treatment groups |
| Gr. |
N |
Regimen 1 |
| Agent |
Vehicle |
mg/kg |
Route |
Schedule |
| 1# |
10 |
PBS |
X |
- |
ip |
qwk x 4 (start on day 1) |
| 2 |
10 |
lapatinib |
- |
150 |
po |
qd x 28 (start on day 1) |
| 3 |
10 |
PB4188 |
- |
2.5 |
ip |
qwk x 4 (start on day 1) |
| 4 |
10 |
PB4188 |
- |
25 |
ip |
qwk x 4 (start on day 1) |
| 5 |
10 |
Pertuzumab + Trastuzumab |
- |
2.5 |
ip |
qwk x 4 (start on day 1) |
| 6 |
10 |
Pertuzumab + Trastuzumab |
- |
25 |
ip |
qwk x 4 (start on dav 1) |
Table 12.
| Affinities of 125I-labeled IgG HER2xHER3 IgG (PB4188), HER3xTT (PB9215), HER2xTT (PB9216) and Herceptin
(monospecific for HER2), as determined using steady state cell affinity measurements
with BT-474 cells and SK-BR-3 cells. Data were obtained from three independent experiments. |
| |
BT-474 |
SK-BR-3 |
| Herceptin |
3.7 ± 0.5 nM |
1.3 ± 0.1 nM |
| PB4188 |
3.2 ± 0.5 nM |
2.0 ± 0.4 nM |
| HER2xTT |
3.9 ± 0.6 nM |
2.3 ± 0.7 nM |
| HER3xTT |
0.23 ± 0.08 nM |
0.99 ± 0.4 nM |
Table 13. The mean binding protein reactivities (and ranges) listed for all critical residues
identified. Critical residues involved in PG3958Fab binding were identified as those
mutated in clones that were negative for PG3958Fab binding (<35% WT) but positive
for the control mAb 1129 binding (>80% WT). Two additional critical residues were
identified which did not meet the threshold guidelines, but whose mutation reduced
antibody binding by a lesser extent. Residue numbering is that of PDB ID #1S78.
| HER2 Residue |
Mutation |
PG3958 Fab binding % of wt binding (range) |
Control mAb binding % of wt binding (range) |
Designation |
| 144 |
T144A |
31.9 (11) |
82.1 (13) |
Critical |
| 166 |
R166A |
32.2 (5) |
93.7 (17) |
Critical |
| 181 |
R181A |
10.1 (5) |
98.6 (34) |
Critical |
| 172 |
P172A |
52.5 (2) |
94.9 (24) |
Secondary |
| 179 |
G179A |
41.7 (18) |
87.9 (25) |
Secondary |
Table 14. The mean binding protein reactivities (and ranges) are listed for both critical residues.
Critical residues involved in PG3178 binding were identified as those mutated in clones
that were negative for PG3178 mAb binding (<20% WT) but positive for the control mAb
66223 binding (>70% WT). Residue numbering is that of PDB ID #4P59.
| HER3 Residue |
Mutation |
PG3178 binding % of wt binding (range) |
Control mAb binding % of wt binding (range) |
Designation |
| 409 |
F409A |
16.74 (8) |
79.63 (0) |
Critical |
| 426 |
R426A |
3.17 (5) |
93.08 (36) |
Critical |
Table 15. List of exposed residues within 11.2 Å radius of Arg 426 in HER3:
| Leu 423 |
L423 |
| Tyr 424 |
Y424 |
| Asn 425 |
N425 |
| Gly 427 |
G427 |
| Gly 452 |
G452 |
| Arg 453 |
R453 |
| Tyr 455 |
Y455 |
| Glu 480 |
E480 |
| Arg 481 |
R481 |
| Leu 482 |
L482 |
| Asp 483 |
D483 |
| Lys 485 |
K485 |
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