Field of Invention
[0001] Provided herein are dolaproine-dolaisoleuine peptide analogs, pharmaceutical compositions
comprising such compounds, and such compounds for use in methods of treating cancer.
Background
[0002] Cancer is the second leading cause of human death exceeded only by coronary disease.
In the U.S., cancer accounts for nearly 1 in 4 deaths. Worldwide, millions of people
die from cancer every year. In the United States alone, as reported by the American
Cancer Society, cancer causes the death of well over a half-million people annually,
with over 1.5 million new cases diagnosed per year. While deaths from heart disease
have been declining significantly, those resulting from cancer generally are on the
rise. In the early part of the next century, cancer is predicted to become the leading
cause of death unless new medicines are found.
[0003] Worldwide, several cancers stand out as the leading killers. In particular, carcinomas
of the lung, prostate, breast, colon, pancreas, ovary, and bladder represent the primary
causes of cancer death. With very few exceptions, metastatic cancer is fatal. Moreover,
even for those cancer patients who initially survive their primary cancers, common
experience has shown that their lives are dramatically altered. Many cancer patients
experience strong anxieties driven by the awareness of the potential for recurrence
or treatment failure. Many cancer patients experience physical debilitations following
treatment. Furthermore, many cancer patients experience a recurrence.
[0004] Promising new cancer therapeutics include the dolastatins and synthetic dolastatin
analogs such as auristatins (
U.S. Pat. Nos. 5,635,483,
5,780,588,
6,323,315, and
6,884,869;
Shnyder et al. (2007) Int. J. Oncol. 31:353-360;
Otani, M. et al. Jpn. J. Cancer Res. 2000, 91, 837-844;
PCT Intl. Publ. Nos. WO 01/18032 A3,
WO 2005/039492,
WO 2006/132670, and
WO 2009/095447;
Fennell, B.J. et al. J. Antimicrob. Chemther. 2003, 51, 833-841). Dolastatins and auristatins have been shown to interfere with microtubule dynamics,
thus disrupting cell division (
Woyke et al. (2001) Antimicrob. Agents Chemother. 45(12):3580-3584), and have anticancer (
U.S. Pat. No. 5,663,149) and antifungal activity (
Pettit et al. (1998) Antimicrob. Agents Chemother. 42:2961-2965). Unfortunately, despite early enthusiasm, dolastatin 10 showed poor results as a
single agent in phase II clinical trials (Shnyder (2007),
supra). Certain compounds in the auristatins family have shown greater promise as clinical
candidates with improved efficacy and pharmacological characteristics over the dolastatins
(
Pettit et al. (1995) Anti-Cancer Drug Des. 10:529-544;
Pettit et al. (1998) Anti-Cancer Drug Des. 13:243-277; Shnyder (2007),
supra). Various synthetic analogs of this structural type have been described (
U.S. Patent No. 6,569,834;
U.S. Pat. No. 6,124,431; and
Pettit et al. (2011) J. Nat. Prod. 74:962-968).
[0005] The auristatins have several properties which make them attractive for pharmaceutical
development. First, these compounds are extremely potent. Second, their preparation
is straightforward because of the peptidic scaffold. Third, they possess good pharmacokinetic
and metabolic profiles compared to peptides in general, or to other cancer drug classes
in particular.
[0006] Despite significant advances, there remains a need for new anticancer therapeutics
with desirable pharmaceutical properties.
Summary
[0008] WO2007/008603A1 relates to auristatin peptide analogs of MeVal-Val-Dil-Dap-Phe (MMAF), having C-terminal
phenylalanine residue side chain replacements or modifications which are provided
alone or attached to ligands through various linkers.
[0010] EP0695758A2 relates to the isolation, elucidation and synthetic replication of pentapeptide amides
and esters.
[0011] WO2014/072888A1 relates to anti-IL-13-Rα2 antibodies and antibody drug conjugates.
[0012] WO2014/072897A1 relates to anti-Notch3 antibodies, anti-Notch3 antibody-drug conjugates.
[0013] WO2013072813A2 relates to cytotoxic pentapeptides, to antibody drug conjugates thereof.
[0014] In one aspect, the invention provides a compound of Formula (I):

wherein
R1 and R2 are each independently -H or alkyl;
X is absent;
R3 is a group of the formula :

wherein R15 and R16 are each independently -H, -OH, -NH2, -SH, -N3, alkyl, alkenyl, alkynyl, -alkyl-OH, -alkyl-NH2, -alkyl-SH, or -alkyl-N3;
R4 is a group of the formula :

wherein R17 is -OH, -NH2, -SH, -N3, -CO2H, alkenyl, alkynyl, -alkyl-OH, -alkyl-NH2, - alkyl-SH, -alkyl-N3 or -alkyl-CO2H; and R18 is -H, -OH, -NH2, -SH, -N3, -CO2H, alkyl, alkenyl, alkynyl, -alkyl-OH, -alkyl-NH2, -alkyl-SH, -alkyl-N3 or -alkyl-CO2H;
R5 is sec-butyl or isobutyl;
R6 is -H or alkyl;
R7 is -H, alkyl, -CO2Ra, -CONRbRc, substituted or unsubstituted phenyl, or substituted or unsubstituted heterocyclic
ring; R8 is -H, alkyl, substituted or unsubstituted phenyl, or substituted or unsubstituted
heterocyclic ring;
wherein Ra is -H or alkyl;
Rb and Rc are each independently -H or alkyl;
R9 is -H or alkyl; or R9 is taken together with R4 and the atoms to which they are attached to form a substituted or unsubstituted heterocycloalkyl
ring;
R10 is -H or alkyl;
R11 is -H or alkyl;
R12 is -H or alkyl;
R13 is -H or alkyl; and
R14 is -H, -OH or alkyl;
or a pharmaceutically acceptable salt thereof.
[0015] In one embodiment R
15 and R
16 are each independently-H or alkyl; R
7 is -H, -CO
2R
a, -CONR
bR
c or substituted or unsubstituted heterocyclic ring; R
8 is substituted or unsubstituted phenyl, or substituted or unsubstituted heterocyclic
ring; and R
14 is -H.
[0016] In another embodiment R
15 and R
16 are each methyl. In a further embodiment, R
17 is-OH, -NH
2, -SH or-N
3; and R
18 is -H or alkyl. In a yet further embodiment, R
7 is -H, -CO
2R
a or -CONR
bR
c; and R
8 is phenyl.
[0017] In another embodiment R
1 and R
2 are each independently -H or C
1-6-alkyl;
X is absent;
R
3 is

wherein R
15 and R
16 are each independently -H, -OH, or C
1-6-alkyl;
R
4 is

wherein R
17 is -OH, -NH
2, -SH, -N
3, -CO
2H, C
1-6-alkyl-NH
2, alkynyl, alkenyl, or -C
1-6-alkyl-N
3; and R
18 is -H or C
1-6-alkyl;
R
5 is sec-butyl;
R
6 is -H;
R
7 is -H, C
1-6-alkyl, -CO
2R
a, -CONR
bR
c, tetrazolyl or thiazolyl; wherein R
a is -H or C
1-6-alkyl; and R
b and R
c are each independently -H or C
1-6-alkyl;
R
8 is -H, C
1-6-alkyl, substituted or unsubstituted phenyl or substituted or unsubstituted heterocyclic
ring;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each independently C
1-6-alkyl; and
R
14 is -H, C
1-6-alkyl or -OH;
or a pharmaceutically acceptable salt thereof.
[0018] In another embodiment R
1 and R
2 are each independently -H or methyl;
X is absent;
R
3 is

wherein R
15 and R
16 are each independently -H, -OH, or methyl;
R
4 is

wherein R
17 is -OH, -NH
2, -SH, -N
3, -CO
2H, aminomethyl, alkynyl, alkenyl, or azidomethyl; and R
18 is -H or methyl;
R
5 is
sec-butyl;
R
6 is -H;
R
7 is -H, methyl, -CO
2R
a, or -CONR
bR
c; wherein R
a is -H or methyl; and R
b and R
c are each independently -H or methyl;
R
8 is -H, methyl, ethyl, pyridinyl, piperidinyl, unsubstituted phenyl, phenyl substituted
with halo;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each methyl; and
R
14 is -H, methyl or -OH;
or a pharmaceutically acceptable salt thereof.
[0019] In another embodiment R
1 and R
2 are each independently -H or C
1-6-alkyl;
X is absent;
R
3 is

wherein R
15 and R
16 are each independently -H, -OH, or C
1-6-alkyl;
R
4 is

wherein R
17 is -N
3 and R
18 is -H or methyl;
R
5 is sec-butyl;
R
6 is -H;
R
7 is -H, C
1-6-alkyl, -CO
2R
a, -CONR
bR
c, tetrazolyl or thiazolyl; wherein R
a is -H or C
1-6-alkyl; and R
b and R
c are each independently -H or C
1-6-alkyl;
R
8 is -H, C
1-6-alkyl, substituted or unsubstituted phenyl or substituted or unsubstituted heterocyclic
ring;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each independently C
1-6-alkyl; and
R
14 is -H, C
1-6-alkyl or -OH;
or a pharmaceutically acceptable salt thereof.
[0020] In another embodiment R
1 and R
2 are each methyl;
X is absent;
R
3 is a group of the formula:

wherein R
15 and R
16 are each methyl;
R
4 is a group of formula:

wherein R
17 is -N
3, -NH
2, -OH, -SH, and R
18 is -H or methyl;
R
5 is
sec-butyl;
R
6 is -H;
R
7 is -CO
2R
a, or -CONR
bR
c, wherein R
a is -H or C
1-6-alkyl; R
b and R
c are each independently -H or C
1-6-alkyl;
R
8 is phenyl;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each methyl; and
R
14 is -H;
or a pharmaceutically acceptable salt thereof.
[0021] In another embodiment R
1 and R
2 are each independently -H or C
1-6-alkyl;
X is absent;
R
3 is

wherein R
15 and R
16 are each independently -H, -OH, or C
1-6-alkyl;
R
4 is

wherein R
17 is -N
3; and R
18 is -H or C
1-6-alkyl;
R
5 is
sec-butyl;
R
6 is -H;
R
7 is C
1-6-alkyl, -CONR
bR
c, tetrazolyl or thiazolyl; wherein R
b and R
c are each independently -H or C
1-6-alkyl;
R
8 is -H, C
1-6-alkyl, substituted or unsubstituted phenyl or substituted or unsubstituted heterocyclic
ring;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each independently C
1-6-alkyl; and
R
14 is -H, C
1-6-alkyl or -OH;
or a pharmaceutically acceptable salt thereof.
[0022] In another embodiment X is absent;
R
1 and R
2 are each independently -H or C
1-6-alkyl;
R
3 is

wherein R
15 and R
16 are each independently -H, -OH, or C
1-6-alkyl;
R
4 is

wherein R
17 is -N
3; and R
18 is -H or methyl;
R
5 is
sec-butyl;
R
6 is -H;
R
7 is -CONR
bR
c, wherein R
b and R
c are each independently -H or C
1-6-alkyl;
R
8 is -H, C
1-6-alkyl, substituted or unsubstituted phenyl or substituted or unsubstituted heterocyclic
ring;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each independently C
1-6-alkyl; and
R
14 is -H, C
1-6-alkyl or -OH;
or a pharmaceutically acceptable salt thereof.
[0023] In other embodiments, the compound may be selected from the group consisting of:
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-2-(dimethylamino)-N-((S)-3-hydroxy-1-(((3R,4S,5i)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide;
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S)-2-(dimethylamino)-N-((2S)-3-hydroxy-1-(((3R,4S,5S)-3-methoxy-1-((2S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(piperidin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide;
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-3-methoxy-1-((2S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(piperidin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-N-((S)-3-amino-1-(((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-2-(dimethylamino)-3-methylbutanamide;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-4-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-mercapto-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-mercapto-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-
methylpropanamido)-3-phenylpropanoic acid;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3 S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3
-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3
-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(S)-4-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(S)-4-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpent-4-ynamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(2S,3S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-valinate;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-6-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylhexanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(S)-3-((S)-2-(dimethylamino)-3-methylbutanamido)-4-(((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-3-(((S)-1-methoxy-1-oxo-3-phenylpropan-2-yl)amino)-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-4-oxobutanoic
acid;
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-isoleucinate;
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)propanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3
-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(2S,3S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide;
((2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide;
tert-butyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3
-methoxy-2-methylpropanoyl)-L-phenylalanine;
tert-butyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-azido-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(thiazol-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
tert-butyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
and
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(thiazol-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
or pharmaceutically acceptable salts thereof.
[0024] In a further embodiment, the compound is (2S,3S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide,
or pharmaceutically acceptable salts thereof.
[0025] In a second aspect, the invention provides a pharmaceutical composition comprising
an effective amount of the compound of the first aspect or a pharmaceutically acceptable
salt thereof and a pharmaceutically acceptable excipient.
[0026] In a third aspect, the invention provides a compound as defined in the first aspect
or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition as
defined in the second aspect, for use in a method of treatment of a cancer in a subject
in need of such treatment.
[0027] In the context of the invention, references to methods of treatment are to be understood
as referring to the compounds and compositions of the invention for use in said methods.
Accordingly, aspects and embodiments relating to methods of treatment are to be understood
as relating to a compound or composition for use in the above sense.
Brief Description of the Figures
[0028]
FIG. 1 shows in vitro tubulin polymerization data for tubulin treated with Example
2, Example 4, and Example 6. Untreated (buffer) tubulin shows the basal level of tubulin
polymerization. A tubulin stabilizer (Paclitaxel) and a tubulin de-stabilizer (Control)
were used as controls. All compounds were used at a final concentration of 10 µM.
FIG. 2 shows in vitro tubulin polymerization data for tubulin treated with Example
1, Example 3, and Example 5. Untreated (buffer) tubulin shows the basal level of tubulin
polymerization. A tubulin stabilizer (Paclitaxel) and a tubulin de-stabilizer (Control)
were used as controls. All compounds were used at a final concentration of 10 µM.
FIG. 3 shows in vitro tubulin polymerization data for tubulin treated with Example
8, Example 9, and Example 12. Untreated (buffer) tubulin shows the basal level of
tubulin polymerization. A tubulin stabilizer (Paclitaxel) and a tubulin de-stabilizer
(Control) were used as controls. All compounds were used at a final concentration
of 10 µM.
FIG. 4 shows in vitro tubulin polymerization data for tubulin treated with Example
7, Example 10, and Example 11. Untreated (Buffer) tubulin shows the basal level of
tubulin polymerization. A tubulin stabilizer (Paclitaxel) and a tubulin de-stabilizer
(Control) were used as controls. All compounds were used at a final concentration
of 10 µM.
FIG. 5 shows in vitro tubulin polymerization data for tubulin treated with Example
19, Example 20, and Example 21. Untreated (Buffer) tubulin shows the basal level of
tubulin polymerization. A tubulin stabilizer (Paclitaxel) and a tubulin de-stabilizer
(Control) were used as controls. All compounds were used at a final concentration
of 10 µM.
FIG. 6 shows in vitro tubulin polymerization data for tubulin treated with Example
13, Example 16, and Example 22. Untreated (Buffer) tubulin shows the basal level of
tubulin polymerization. A tubulin stabilizer (Paclitaxel) and a tubulin de-stabilizer
(Control) were used as controls. All compounds were used at a final concentration
of 10 µM.
FIG. 7 shows in vitro tubulin polymerization data for tubulin treated with Example
14, Example 15, Example 18, Example 20, and Example 23. Untreated (Buffer) tubulin
shows the basal level of tubulin polymerization. A tubulin stabilizer (Paclitaxel)
and a tubulin de-stabilizer (Control) were used as controls. All compounds were used
at a final concentration of 10 µM.
FIG. 8 shows in vitro tubulin polymerization data for tubulin treated with Example
17, Example 19, Example 25, and Example 26. Untreated (Buffer) tubulin shows the basal
level of tubulin polymerization. A tubulin stabilizer (Paclitaxel) and a tubulin de-stabilizer
(Control) were used as controls. All compounds were used at a final concentration
of 10 µM.
FIG. 9 shows the results for Examples 1, 2, 3 and Paclitaxel in an in vitro cytotoxicity
experiment using PC3 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 10 shows the results for Examples 1, 2, 3 and Paclitaxel in an in vitro cytotoxicity
experiment using HCT15 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 11 shows the results for Examples 1, 2, 3 and Paclitaxel in an in vitro cytotoxicity
experiment using HCC-1954 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 12 shows the results for Examples 4, 5, and 6 in an in vitro cytotoxicity experiment
using PC3 cells, as described in Example B1. Data is graphed as percent survival versus
concentration of test compound, compared to untreated control wells.
FIG. 13 shows the results for Examples 4, 5, and 6 in an in vitro cytotoxicity experiment
using HCT15 cells, as described in Example B1. Data is graphed as percent survival
versus concentration of test compound, compared to untreated control wells.
FIG. 14 shows the results for Examples 4, 5, and 6 in an in vitro cytotoxicity experiment
using HCC-1954 cells, as described in Example B1. Data is graphed as percent survival
versus concentration of test compound, compared to untreated control wells.
FIG. 15 shows the results for Examples 7, 8, and 9 in an in vitro cytotoxicity experiment
using PC3 cells, as described in Example B1. Data is graphed as percent survival versus
concentration of test compound, compared to untreated control wells.
FIG. 16 shows the results for Examples 7, 8, and 9 in an in vitro cytotoxicity experiment
using HCT15 cells, as described in Example B1. Data is graphed as percent survival
versus concentration of test compound, compared to untreated control wells.
FIG. 17 shows the results for Examples 7, 8, and 9 in an in vitro cytotoxicity experiment
using HCC-1954 cells, as described in Example B1. Data is graphed as percent survival
versus concentration of test compound, compared to untreated control wells.
FIG. 18 shows the results for Examples 10, 11, and 12 in an in vitro cytotoxicity
experiment using PC3 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 19 shows the results for Examples 10, 11, and 12 in an in vitro cytotoxicity
experiment using HCT15 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 20 shows the results for Examples 10, 11, and 12 in an in vitro cytotoxicity
experiment using HCC-1954 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 21 shows the results for Examples 13, 14, and 15 in an in vitro cytotoxicity
experiment using PC3 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 22 shows the results for Examples 13, 14, and 15 in an in vitro cytotoxicity
experiment using HCC-1954 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 23 shows the results for Examples 16, 21, and 22 in an in vitro cytotoxicity
experiment using PC3 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 24 shows the results for Examples 16, 21, and 22 in an in vitro cytotoxicity
experiment using HCC-1954 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 25 shows the results for Examples 17, 18, and 19 in an in vitro cytotoxicity
experiment using PC3 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 26 shows the results for Examples 17, 18, and 19 in an in vitro cytotoxicity
experiment using HCC-1954 cells, as described in Example B1. Data is graphed as percent
survival versus concentration of test compound, compared to untreated control wells.
FIG. 27 shows the results for Examples 20 and 23 in an in vitro cytotoxicity experiment
using PC3 cells, as described in Example B1. Data is graphed as percent survival versus
concentration of test compound, compared to untreated control wells.
FIG. 28 shows the results for Examples 20 and 23 in an in vitro cytotoxicity experiment
using HCC-1954 cells, as described in Example B1. Data is graphed as percent survival
versus concentration of test compound, compared to untreated control wells.
FIG. 29 shows the results for Examples 25 and 26 in an in vitro cytotoxicity experiment
using PC3 cells, as described in Example B1. Data is graphed as percent survival versus
concentration of test compound, compared to untreated control wells.
FIG. 30 shows the results for Examples 25 and 26 in an in vitro cytotoxicity experiment
using HCC-1954 cells, as described in Example B1. Data is graphed as percent survival
versus concentration of test compound, compared to untreated control wells.
Detailed Description
[0029] As used herein, the terms "including," "containing," and "comprising" are used in
their open, non-limiting sense.
[0030] To provide a more concise description, some of the quantitative expressions given
herein are not qualified with the term "about". It is understood that, whether the
term "about" is used explicitly or not, every quantity given herein is meant to refer
to the actual given value, and it is also meant to refer to the approximation to such
given value that would reasonably be inferred based on the ordinary skill in the art,
including equivalents and approximations due to the experimental and/or measurement
conditions for such given value.
[0031] The term "alkyl," by itself or as part of another term, refers to a saturated C
1-C
12 hydrocarbon containing normal, secondary, tertiary or cyclic carbon atoms. Particular
alkyl groups are those having 1 to 8 carbon atoms, 1 to 6 carbon atoms, or 1 to 4
carbon atoms. Examples of alkyl groups include, but are not limited to: methyl (Me),
ethyl (Et),
n-propyl, isopropyl, butyl, isobutyl,
sec-butyl,
tert-butyl (tBu),
n-pentyl, isopentyl,
tert-pentyl, and
n-hexyl, isohexyl. In some embodiments, an alkyl group has normal, secondary, or tertiary
carbon atoms and does not have cyclic carbon atoms.
[0032] The term "alkenyl," by itself or as part of another term, refers to a C
2-C
12 hydrocarbon containing normal, secondary, tertiary or cyclic carbon atoms with at
least one site of unsaturation,
i.e., a carbon-carbon, sp
2 double bond. Particular alkenyl groups are those having 2 to 8 carbon atoms, 2 to
6 carbon atoms, or 2 to 4 carbon atoms. Examples include, but are not limited to:
vinyl (-CH=CH
2), allyl (-CH
2CH
2=CH
2), cyclopentenyl (-C
5H
7), and 5-hexenyl (-CH
2CH
2CH
2CH
2CH=CH
2). In some embodiments, an alkenyl group has normal, secondary, or tertiary carbon
atoms and does not have cyclic carbon atoms.
[0033] The term "alkynyl," by itself or as part of another term, refers to a C
2-C
12 hydrocarbon containing normal, secondary, tertiary or cyclic carbon atoms with at
least one site of unsaturation,
i.e., a carbon-carbon, sp triple bond. Particular alkynyl groups are those having 2 to
8 carbon atoms, 2 to 6 carbon atoms, or 2 to 4 carbon atoms. Examples include, but
are not limited to: ethynyl (-C≡CH) and2-propynyl (-CH
2C≡CH). In some embodiments, an alkynyl group has normal, secondary, or tertiary carbon
atoms and does not have cyclic carbon atoms.
[0034] The term "alkoxy" refers to an -O-alkyl group, where the O is the point of attachment
to the rest of the molecule, and alkyl is as defined above.
[0037] The terms "heterocycle," "heterocyclic," or "heterocyclyl" as used herein encompass
both the "heterocycloalkyl" and "heteroaryl" moieties as defined above.
[0038] Those skilled in the art will recognize that the species of heterocyclyl, heteroaryl
and heterocycloalkyl groups listed or illustrated above are not exhaustive, and that
additional species within the scope of these defined terms may also be selected.
[0039] The term "halogen" represents chlorine, fluorine, bromine, or iodine. The term "halo"
represents chloro, fluoro, bromo, or iodo.
[0040] The term "substituted" means that the specified group or moiety bears one or more
substituents. The term "unsubstituted" means that the specified group bears no substituents.
The term "optionally substituted" means that the specified group is unsubstituted
or substituted by one or more substituents. Where the term "substituted" is used to
describe a structural system, the substitution is meant to occur at any valency-allowed
position on the system.
[0041] Any formula given herein is intended to represent compounds having structures depicted
by the structural formula as well as certain variations or forms. In particular, compounds
of any formula given herein may have asymmetric centers and therefore exist in different
enantiomeric forms. All optical isomers and stereoisomers of the compounds of the
general formula, and mixtures thereof, are considered within the scope of the formula.
Thus, any formula given herein is intended to represent a racemate, one or more enantiomeric
forms, one or more diastereomeric forms, one or more atropisomeric forms, and mixtures
thereof. Furthermore, certain structures may exist as geometric isomers (i.e.,
cis and
trans isomers), as tautomers, or as atropisomers. Additionally, any formula given herein
is intended to refer also to any one of hydrates, solvates, and amorphous and polymorphic
forms of such compounds, and mixtures thereof, even if such forms are not listed explicitly.
In some embodiments, the solvent is water and the solvates are hydrates.
[0042] Any formula given herein is also intended to represent unlabeled forms as well as
isotopically labeled forms of the compounds. Isotopically labeled compounds have structures
depicted by the formulas given herein except that one or more atoms are replaced by
an atom having a selected atomic mass or mass number. Examples of isotopes that can
be incorporated into compounds described herein include isotopes of hydrogen, carbon,
nitrogen, oxygen, phosphorous, fluorine, chlorine, and iodine, such as
2H,
3H,
11C,
13C,
14C,
15N,
18O,
17O ,
31P,
32P,
35S,
18F,
36Cl, and
125I, respectively. Such isotopically labeled compounds are useful in metabolic studies
(preferably with
14C), reaction kinetic studies (with, for example
2H or
3H), detection or imaging techniques [such as positron emission tomography (PET) or
single-photon emission computed tomography (SPECT)] including drug or substrate tissue
distribution assays, or in radioactive treatment of patients. In particular, an
18F or
11C labeled compound may be particularly preferred for PET or SPECT studies. Further,
substitution with heavier isotopes such as deuterium (i.e.,
2H) may afford certain therapeutic advantages resulting from greater metabolic stability,
for example increased in vivo half-life or reduced dosage requirements. Isotopically
labeled compounds described herein and prodrugs thereof can generally be prepared
by carrying out the procedures disclosed in the schemes or in the examples and preparations
described below by substituting a readily available isotopically labeled reagent for
a non-isotopically labeled reagent.
[0043] When referring to any formula given herein, the selection of a particular moiety
from a list of possible species for a specified variable is not intended to define
the same choice of the species for the variable appearing elsewhere. In other words,
where a variable appears more than once, the choice of the species from a specified
list is independent of the choice of the species for the same variable elsewhere in
the formula, unless stated otherwise.
[0044] The nomenclature "C
i-j" with j > i, when applied herein to a class of substituents, is meant to refer to
embodiments of any of the compositions, uses, or methods described herein for which
each and every one of the number of carbon members, from i to j including i and j,
is independently realized. By way of example, the term C
1-3 refers independently to embodiments that have one carbon member (C
1), embodiments that have two carbon members (C
2), and embodiments that have three carbon members (C
3).
[0045] The term C
n-malkyl refers to an aliphatic chain, whether straight or branched, with a total number
N of carbon members in the chain that satisfies n ≤ N ≤ m, with m > n.
[0046] Chemical names listed herein were generated using AutoNOM™ software. If there is
a discrepancy between a chemical structure and the name listed for that structure,
the structure prevails.
[0047] According to the foregoing interpretive considerations on assignments and nomenclature,
it is understood that explicit reference herein to a set implies, where chemically
meaningful and unless indicated otherwise, independent reference to embodiments of
such set, and reference to each and every one of the possible embodiments of subsets
of the set referred to explicitly.
[0048] In the compounds of Formula (I), R
1 and R
2 are each independently -H or alkyl, for example C
1-6alkyl In some embodiments, R
1 and R
2 are each independently -H or methyl. In some embodiments, R
1 and R
2 are each independently alkyl. In some embodiments, R
1 and R
2 are both methyl. In some embodiments, R
1 and R
2 are both -H.
[0049] In the compounds of Formula (I), X is absent.
[0050] In the compounds of Formula (I), R
3 is

wherein R
15 and R
16 are each independently-H, -OH, -NH
2, -SH, -N
3, alkyl, alkenyl, alkynyl, -alkyl-OH, -alkyl-NH
2, -alkyl-SH, or -alkyl-N
3. In some embodiments, R
15 and R
16 are each independently -H, alkyl, -(CH
2)
0-6C≡CH,-(CH
2)
0-6CH=CH
2, -(CH
2)
0-6OH, -(CH
2)
0-6NH
2, -(CH
2)
0-6SH, or -(CH
2)
0-6N
3. In some embodiments, R
15 and R
16 are each independently -H, -OH, or alkyl. In some embodiments, R
15 and R
16 are each independently -H, -OH, or methyl. In some embodiments, R
15 is -OH and R
16 is hydrogen. In some embodiments, R
15 is -OH and R
16 is methyl.
[0051] In certain embodiments, R
3 is in the
R stereochemical configuration relative to the remainder of the molecule. In other
embodiments, R
3 is in the
S stereochemical configuration relative to the remainder of the molecule. In certain
embodiments, the R
3 group itself contains one or more chiral centers, and those stereocenters are each
independently in the
R or
S configuration.
[0052] In the compounds of Formula (I), R
4 is a group of the formula :

wherein R
17 is -OH, -NH
2, -SH, -N
3, -CO
2H, alkenyl, alkynyl, -alkyl-OH, -alkyl-NH
2, -alkyl-SH, -alkyl-N
3 or -alkyl-CO
2H; and R
18 is -H, -OH, -NH
2, -SH, -N
3, -CO
2H, alkyl, alkenyl, alkynyl, -alkyl-OH, -alkyl-NH
2, -alkyl-SH, -alkyl-N
3 or -alkyl-CO
2H
[0053] In some embodiments, R
4 is

wherein R
17 is -OH, -NH
2, -SH, -N
3, -CO
2H, alkenyl, alkynyl, -alkyl-OH, -alkyl-NH
2, -alkyl-SH, -alkyl-N
3 or -alkyl-CO
2H, and R
18 is -H, -OH, -NH
2, -SH, -N
3, -CO
2H, alkenyl, alkynyl, -alkyl-OH, -alkyl-NH
2, - alkyl-SH, -alkyl-N
3 or -alkyl-CO
2H. In still other embodiments, R
17 and R
18 are each independently -(CH
2)
0-6C≡CH, -(CH
2)
0-6CH=CH
2, -(CH
2)
0-6OH, -(CH
2)
0-6NH
2, - (CH
2)
0-6SH, or -(CH
2)
0-6N
3 and R18 may also be -H or alkyl. In some embodiments, R
17 and R
18 are each independently -OH, -NH
2, -SH, -N
3, -CO
2H, alkyl-NH
2, or -alkyl-N
3 and R18 may also be -H or alkyl. In some embodiments, R
17 and R
18 are each independently -OH, -NH
2, -SH, -N
3, -CO
2H, -CH
2NH
2, or -CH
2N
3 and R18 may also be -H or methyl.
[0054] In certain embodiments, R
4 is taken together with R
9 and the atoms to which they are attached to form a substituted or unsubstituted heterocycloalkyl
ring. In certain embodiments, R
4 is taken together with R
9 and the atoms to which they are attached to form a 5- to 7-member heterocycloalkyl
ring, which may be unsubstituted or substituted with one or more groups selected from
-OH, -NH
2, -SH, and -N
3. In certain embodiments, the heterocycloalkyl ring is a pyrrolidine ring, which may
be unsubstituted or substituted with one or more groups selected from -OH, -NH
2, -SH, and -N
3.
[0055] In certain embodiments, R
4 is in the
R stereochemical configuration relative to the remainder of the molecule. In other
embodiments, R
4 is in the
S stereochemical configuration relative to the remainder of the molecule. In certain
embodiments, the R
4 group itself contains one or more chiral centers, and those stereocenters are each
independently in the
R or
S configuration.
[0056] In certain embodiments, R
5 is
sec-butyl. In other embodiments, R
5 is isobutyl. In certain embodiments, R
5 is in the
R stereochemical configuration relative to the remainder of the molecule. In other
embodiments, R
5 is in the
S stereochemical configuration relative to the remainder of the molecule. In some embodiments,
the chiral center within the R
5 group is in the R configuration, and in other embodiments, that center is in the
S configuration.
[0057] In certain embodiments, R
6 is -H. In other embodiments, R
6 is alkyl, for example C
1-8alkyl, C
1-4alkyl, methyl, or ethyl.
[0058] In the compounds of Formula (I), R
7 is -H, alkyl, -CO
2R
a, -CONR
bR
c, substituted or unsubstituted phenyl, or substituted or unsubstituted heterocyclic
ring; and R
8 is -H, alkyl, substituted or unsubstituted phenyl, or substituted or unsubstituted
heterocyclic ring; wherein R
a is -H or alkyl, and R
b and R
c are each independently -H or alkyl;
[0059] In certain embodiments, R
7 and R
8 are each independently substituted or unsubstituted phenyl or substituted or unsubstituted
heterocyclic ring, wherein the phenyl or heterocyclic ring may be substituted with
one or more groups selected from halo, oxo, hydroxy, amino, alkyl, and alkoxy. In
certain other embodiments, R
7 is unsubstituted 3- to 8-member heterocyclic ring. In certain other embodiments,
R
7 is substituted 3- to 8-member heterocyclic ring. In certain other embodiments, R
8 is phenyl which is optionally subsutituted with halo.
[0060] In certain embodiments, R
7 is in the
R stereochemical configuration relative to the remainder of the molecule. In other
embodiments, R
7 is in the
S stereochemical configuration relative to the remainder of the molecule.
[0061] In certain embodiments, R
8 is in the
R stereochemical configuration relative to the remainder of the molecule. In other
embodiments, R
8 is in the
S stereochemical configuration relative to the remainder of the molecule.
[0062] In some embodiments, R
7 is -CO
2R
a -CONR
bR
c; tetrazolyl or thiazolyl, wherein R
a is - H or alkyl, for example C
1-6alkyl or methyl; and R
b and R
c are each independently -H or alkyl, for example C
1-6alkyl or methyl; and R
8 is phenyl which is optionally subsutituted with halo.
[0063] In some embodiments, R
9 is -H. In other embodiments, R
9 is alkyl, for example C
1-8alkyl, C
1-4alkyl, methyl, or ethyl. In some embodiments, R
9 is -H or methyl. In some embodiments, R
9 is methyl.
[0064] In some embodiments, R
10 is -H. In other embodiments, R
10 is alkyl, for example C
1-8alkyl, C
1-4alkyl, methyl, or ethyl. In some embodiments, R
10 is -H or methyl. In some embodiments, R
10 is methyl.
[0065] In some embodiments, R
11 is -H. In other embodiments, R
11 is alkyl, for example C
1-8alkyl, C
1-4alkyl, methyl, or ethyl. In some embodiments, R
11 is -H or methyl. In some embodiments, R
11 is methyl.
[0066] In some embodiments, R
12 is -H. In other embodiments, R
12 is alkyl, for example C
1-8alkyl, C
1-4alkyl, methyl, or ethyl. In some embodiments, R
12 is -H or methyl. In some embodiments, R
12 is methyl.
[0067] In some embodiments, R
13 is -H. In other embodiments, R
13 is alkyl, for example C
1-8alkyl, C
1-4alkyl, methyl, or ethyl. In some embodiments, R
13 is -H or methyl. In some embodiments, R
13 is methyl.
[0068] In some embodiments, R
14 is -H. In some embodiments, R
14 is alkyl, for example C
1-6alkyl, methyl, or ethyl. In some embodiments, R
14 is -OH.
[0069] In certain embodiments, R
14 is in the R stereochemical configuration relative to the remainder of the molecule.
In other embodiments, R
14 is in the S stereochemical configuration relative to the remainder of the molecule.
[0070] In some embodiments, R
7 is -CO
2R
a, wherein R
a is -H or alkyl, for example C
1-6alkyl or methyl; R
8 is phenyl; and R
14 is -H. In some embodiments, R
7 is -CONR
bR
c, wherein R
b and R
c are each independently -H or alkyl, for example C
1-6alkyl or methyl; R
8 is phenyl; and R
14 is -H. In some embodiments, R
7 is alkyl, for example C
1-6alkyl or methyl; R
8 is phenyl; and R
14 is -OH. In some embodiments, R
7 is methyl, R
8 is phenyl, and R
14 is -OH. In some embodiments, R
7 and R
14 are both -H, and R
8 is pyridinyl, piperidinyl, unsubstituted phenyl, or phenyl substituted with halo,
for example fluoro, chloro, or bromo. In some embodiments, R
7 is -CO
2R
a, wherein R
a is - H or alkyl, for example C
1-6alkyl or methyl; R
8 is -H or alkyl, for example C
1-6alkyl or methyl; and R
14 is alkyl, for example C
1-6alkyl, methyl, or ethyl. In some embodiments, R
7 is -CO
2R
a, wherein R
a is -H or alkyl, for example C
1-6alkyl or methyl; R
8 is -H or alkyl, for example C
1-6alkyl or methyl; and R
14 is -OH.
[0071] In certain embodiments,
R
1 and R
2 are each independently -H or C
1-6alkyl;
X or is absent;
R
3 is

wherein R
15 and R
16 are each independently -H, -OH, or C
1-6alkyl;
R
4 is

wherein R
17 is -OH, -NH
2, -SH, -N
3, -CO
2H, -C
1-6alkyl-NH
2, alkynyl, alkenyl, or -C
1-6alkyl-N
3; and R
18 is -H or C
1-6alkyl;
R
5 is
sec-butyl;
R
6 is -H;
R
7 is -H, C
1-6alkyl, -CO
2R
a, -CONR
bR
c, tetrazolyl or thiazolyl; wherein R
a is -H or C
1-6alkyl; and R
b and R
c are each -H or C
1-6alkyl;
R
8 is -H, C
1-6alkyl, substituted or unsubstituted phenyl or substituted or unsubstituted heterocyclic
ring;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each independently C
1-6alkyl; and
R
14 is -H, C
1-6alkyl or -OH.
[0072] In certain embodiments,
R
1 and R
2 are each independently -H or methyl;
X or is absent;
R
3 is

wherein R
15 and R
16 are each independently -H, -OH, or methyl;
R
4 is

wherein R
17 is -OH, -NH
2, -SH, -N
3, -CO
2H, aminomethyl, alkynyl, alkenyl, or azidomethyl; and R
18 is -H or methyl;
R
5 is sec-butyl;
R
6 is -H;
R
7 is -H, methyl, -CO
2R
a, or -CONR
bR
c; wherein R
a is -H or methyl; and R
b and R
c are each -H or methyl;
R
8 is -H, methyl, ethyl, pyridinyl, piperidinyl, unsubstituted phenyl, phenyl substituted
with halo;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each methyl; and
R
14 is -H, methyl or -OH.
[0073] In certain embodiments,
R
1 and R
2 are each independently -H or C
1-6alkyl;
X is absent;
R
3 is

wherein R
15 and R
16 are each independently -H, -OH, or C
1-6alkyl;
R
4 is

wherein R
17 is -N
3, and R
18 is -H or methyl;
R
5 is sec-butyl;
R
6 is -H;
R
7 is -H, C
1-6alkyl, -CO
2R
a, -CONR
bR
c, tetrazolyl or thiazolyl; wherein R
a is -H or C
1-6alkyl; and R
b and R
c are each -H or C
1-6alkyl;
R
8 is -H, C
1-6alkyl, substituted or unsubstituted phenyl or substituted or unsubstituted heterocyclic
ring;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each independently C
1-6alkyl; and
R
14 is -H, C
1-6alkyl or -OH.
[0074] In some embodiments of Formula (I), wherein,
R
1 and R
2 are each methyl;
X is absent;
R3 is a group of the formula :

wherein R
15 and R
16 are each methyl;
R
4 is a group of the formula :

wherein R
17 is -N
3, -NH
2, -OH, -SH, and R
18 is -H or methyl;
R
5 is sec-butyl;
R
6 is -H;
R
7 is -CO
2R
a or CONR
bR
c,
wherein Ra is -H or C1-6alkyl;
Rb and Rc are each independently H or C1-6alkyl;
R
8 is phenyl;
R
9 is -H;
R
10, R
11, R
12, and R
13 are each independently methyl; and
R
14 is -H.
[0075] In certain embodiments, compounds of Formula (I) are selected from the group consisting
of:
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-2-(dimethylamino)-N-((S)-3-hydroxy-1-(((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide;
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S)-2-(dimethylamino)-N-((2S)-3-hydroxy-1-(((3R,4S,5S)-3-methoxy-1-((2S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(piperidin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide;
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-3-methoxy-1-((2S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(piperidin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-N-((S)-3-amino-1-(((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-2-(dimethylamino)-3-methylbutanamide;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-4-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-mercapto-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-mercapto-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate;
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(S)-4-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(S)-4-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpent-4-ynamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(2S,3S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-valinate;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-6-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylhexanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,4S)-4-azido-1-(dimethyl-L-valyl)-N-methylpyrrolidine-2-carboxamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(S)-3-((S)-2-(dimethylamino)-3-methylbutanamido)-4-(((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-3-(((S)-1-methoxy-1-oxo-3-phenylpropan-2-yl)amino)-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-4-oxobutanoic
acid;
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-isoleucinate;
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)propanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(2S,3S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide;
((2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide;
tert-butyl((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalanine;
tert-butyl((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
(2S,3S)-3-azido-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide;
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(thiazol-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
tert-butyl((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate;
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide; and
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(thiazol-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide;
and pharmaceutically acceptable salts thereof.
[0076] Also provided herein are pharmaceutically acceptable salts of the compounds of Formula
(I), preferably of those described above and the specific compounds exemplified herein,
pharmaceutical compositions comprising such salts, and methods of using such salts.
[0077] A "pharmaceutically acceptable salt" is intended to mean a salt of a free acid or
base of a compound represented herein that is non-toxic, biologically tolerable, or
otherwise biologically suitable for administration to the subject. See, generally,
S.M. Berge, et al. "Pharmaceutical Salts," J. Pharm. Sci. 1977, 66, 1-19. Preferred pharmaceutically acceptable salts are those that are pharmacologically
effective and suitable for contact with the tissues of subjects without undue toxicity,
irritation, or allergic response. A compound described herein may possess a sufficiently
acidic group, a sufficiently basic group, or both types of functional groups, and
accordingly react with a number of inorganic or organic bases, and inorganic and organic
acids, to form a pharmaceutically acceptable salt. Examples of pharmaceutically acceptable
salts include acid addition salts such as sulfates, pyrosulfates, bisulfates, sulfites,
bisulfites, phosphates, monohydrogen-phosphates, dihydrogenphosphates, metaphosphates,
pyrophosphates, chlorides, bromides, iodides, acetates, propionates, decanoates, caprylates,
acrylates, formates, isobutyrates, caproates, heptanoates, propiolates, oxalates,
malonates, succinates, suberates, sebacates, fumarates, maleates, butyne-1,4-dioates,
hexyne-1,6-dioates, benzoates, chlorobenzoates, methylbenzoates, dinitrobenzoates,
hydroxybenzoates, methoxybenzoates, phthalates, sulfonates, methylsulfonates, propylsulfonates,
besylates, xylenesulfonates, naphthalene-1-sulfonates, naphthalene-2-sulfonates, phenylacetates,
phenylpropionates, phenylbutyrates, citrates, lactates, γ-hydroxybutyrates, glycolates,
tartrates, and mandelates, and salts with inorganic bases such as sodium, potassium,
magnesium, calcium, aluminum, and the like or organic bases such as methylamine, ethylamine,
ethanolamine, lysine, ornithine, and the like, salts with various amino acids or amino
acid derivatives such as acetylleucine and the like, ammonium salts, etc.
[0078] For treatment purposes, pharmaceutical compositions comprising compounds described
herein may further comprise one or more pharmaceutically-acceptable excipients. A
pharmaceutically-acceptable excipient is a substance that is non-toxic and otherwise
biologically suitable for administration to a subject. Such excipients facilitate
formulation and administration of a compound described herein and are compatible with
the active ingredient. Examples of pharmaceutically-acceptable excipients include
stabilizers, lubricants, surfactants, diluents, antioxidants, binders, coloring agents,
emulsifiers, or taste-modifying agents. In preferred embodiments, pharmaceutical compositions
are sterile compositions.
[0079] The pharmaceutical compositions described herein may be formulated as solutions,
emulsions, suspensions, or dispersions in suitable pharmaceutical solvents or carriers,
or as pills, tablets, lozenges, suppositories, powders for reconstitution, or capsules
along with solid carriers according to conventional methods known in the art for preparation
of various dosage forms. For topical applications, the compounds described herein
are preferably formulated as creams or ointments or a similar vehicle suitable for
topical administration. The pharmaceutical compositions and compounds described herein
may be administered in the inventive methods by a suitable route of delivery,
e.g., oral, nasal, parenteral, rectal, topical, ocular, or by inhalation.
[0080] The term "treat" or "treating" as used herein is intended to refer to administration
of a compound described herein to a subject for the purpose of creating a therapeutic
benefit. Treating includes reversing, ameliorating, alleviating, inhibiting the progress
of, or lessening the severity of, a disease, disorder, or condition, or one or more
symptoms of cancer. The term "subject" refers to a mammalian patient in need of such
treatment, such as a human.
[0081] In treatment methods provided herein, "an effective amount" means an amount or dose
sufficient to generally bring about the desired therapeutic benefit in subjects needing
such treatment. Effective amounts or doses of the compounds described herein may be
ascertained by routine methods, such as modeling, dose escalation or clinical trials,
taking into account routine factors,
e.g., the mode or route of administration or drug delivery, the pharmacokinetics of the
agent, the severity and course of the infection, the subject's health status, condition,
and weight, and the judgment of the treating physician. An exemplary dose is in the
range of about 1 ug to 2 mg of active compound per kilogram of subject's body weight
per day, preferably about 0.05 to 100 mg/kg/day, or about 1 to 35 mg/kg/day, or about
0.1 to 10 mg/kg/day. The total dosage may be given in single or divided dosage units
(
e.g., BID, TID, QID).
[0082] The compounds described herein may be used in pharmaceutical compositions or methods
in combination with additional active ingredients in the treatment of cancer. The
additional active ingredients may be administered separately from a compound described
herein or may be included with a compound described herein in a pharmaceutical composition
provided herein. For example, additional active ingredients are those that are known
or discovered to be effective in treating cancer, including those active against another
target associated with cancer, such as but not limited to, Velcade, Rituximab, Methotrexate,
Herceptin, Vincristine, Prednisone, Irinotecan, or the like, or a combination thereof.
Such a combination may serve to increase efficacy, decrease one or more side effects,
or decrease the required dose of a disclosed compound.
[0083] The compounds described herein may be used in pharmaceutical compositions or methods
in combination with additional active ingredients in the treatment of cancer. The
additional active ingredients may be administered separately from a compound described
herein or may be included with a compound described herein in a pharmaceutical composition
provided herein. For example, additional active ingredients are those that are known
or discovered to be effective in treating cancer, including those active against another
target associated with cancer, such as but not limited to, Velcade, Rituximab, Methotrexate,
Herceptin, Vincristine, Prednisone, Irinotecan, or the like, or a combination thereof.
Such a combination may serve to increase efficacy, decrease one or more side effects,
or decrease the required dose of a disclosed compound.
[0084] Compounds of Formula (I) will now be described by reference to illustrative synthetic
schemes for their general preparation below and the specific examples that follow.
Artisans will recognize that, to obtain the various compounds herein, starting materials
may be suitably selected so that the ultimately desired substituents will be carried
through the reaction scheme with or without protection as appropriate to yield the
desired product. Alternatively, it may be necessary or desirable to employ, in the
place of the ultimately desired substituent, a suitable group that may be carried
through the reaction scheme and replaced as appropriate with the desired substituent.
In addition, one of skill in the art will recognize that protecting groups may be
used to protect certain functional groups (amino, carboxy, or side chain groups) from
reaction conditions, and that such groups are removed under standard conditions when
appropriate. Each of the reactions depicted in Scheme A is preferably run at a temperature
from about room temperature to the reflux temperature of the organic solvent used.
Unless otherwise specified, the variables are as defined above in reference to Formula
(I).

[0085] Referring to Scheme A, the preparation of compounds of Formula (I) begins with a
protected acid form of dolaisoleuine (Dil) labeled (A) (see
Pettit et al. (1994) J. Org. Chem. 59:1796-1800). Compound (A) is depicted with a
tert-butyl ester protecting group, but one of skill in the art may select an appropriate
replacement. Coupling with a nitrogen-protected valine or isoleucine derivative (B),
where PG is a suitable amino protecting group such as a Boc (t-butoxycarbonyl) or
fluorenylmethyloxycarbonyl (Fmoc) group, is effected under standard peptide coupling
conditions. For example, reactions are run in the presence of diethyl cyanophosphonate
(DEPC), PyBrOP, PyBOP, BOP, diisopropylcarbodiimide (DIC), dicyclohexylcarbodiimide
(DCC), 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (EDCI), 1-hydroxybenzotriazole
(HOBt), 1-hydroxy-7-aza-benzotriazole (HOAt), HBTU (O-benzotriazol-1-yl-
N,N,N',N'-tetramethyluronium hexafluorophosphate), HATU (
O-(7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate), and the
like, or a combination thereof. Reactions are typically run in the presence of a tertiary
amine base, such as diisopropylethylamine. Suitable solvents include dichloromethane,
N,N-dimethylformamide (DMF), dimethyl sulfoxide (DMSO), ethyl acetate and the like.
The amino protecting group on resultant dipeptide (C) is removed by deprotection under
suitable conditions. For example, where PG is a Boc group, compound (C) is treated
with trifluoroacetic acid to form free amine (D). Where PG is an Fmoc group, compound
(C) is treated with piperidine or diethylamine to yield compound (D). Compound (D)
is then coupled to amino acid derivative (E), in protected form if necessary, under
peptide coupling conditions as described above, to generate tripeptide (F). Treatment
with acid removes the carboxy protecting group to provide free acid (G).

[0086] Referring to Scheme B, the amino-protected dolaproine (Dap) designated as (H) (see
Pettit et al. (1994) J. Org. Chem. 59:6287-6295) is coupled with amine (J) (which is prepared using methods known to one in the art)
under peptide coupling conditions as described above. Resulting dipeptide (K) is deprotected
as discussed for Scheme A to provide compound (L).

[0087] Referring to Scheme C, acid (G) and amine (L) are coupled under peptide coupling
conditions as discussed above to provide compounds of Formula (I). Where the result
of the reaction is a protected form of Formula (I), suitable deprotection conditions
are employed to give the target compound.
Examples
[0088] The following examples are offered to illustrate but not to limit the compositions,
uses, and methods provided herein. The compounds are prepared using the general methods
described above.
[0089] The following chemical abbreviations are used throughout the Examples: Dov (dolavaline);
Abu (2-aminobutyric acid); Dil (dolaisoleuine); Dpr (2,3-diaminopropionic acid); Su
(succinimidinyl); Dab (2,4-diaminobutyric acid); Dap (dolaproine); Bzl (benzyl); and
Tr (trityl).
[0090] LCMS retention times were acquired on an Aquity UPLC BeH C8 1.7 µm 2.1 x 50 mm column,
40 °C, using one of the following methods (as indicated):
Method A: 0-0.50 min: isocratic 80 water/10 acetonitrile/10 1% formic acid in water;
0.50-3.50 min: linear gradient 80 water/10 acetonitrile/10 1% formic acid in water
to 0 water/90 acetonitrile/10 1% formic acid in water; 3.50-3.99 min isocratic 0 water/90
acetonitrile/10 1% formic acid in water; 3.99-4.00 min linear gradient 0 water/90
acetonitrile/10 1% formic acid in water to 80 water/10 acetonitrile/10 1% formic acid
in water.
Method B: 0-0.50 min: isocratic 85 water/5 acetonitrile/10 1% formic acid in water;
0.50-1.60 min: linear gradient 85 water/5 acetonitrile/10 1% formic acid in water
to 0 water/98 acetonitrile/2 1% formic acid in water; 1.60-1.80 min isocratic 0 water/98
acetonitrile/2 1% formic acid in water; 1.80-1.90 min linear gradient 0 water/98 acetonitrile/2
1% formic acid in water to 85 water/5 acetonitrile/10 1% formic acid in water; 1.90-2.00
min isocratic 85 water/5 acetonitrile/10 1% formic acid in water.
Example 1
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0091]

[0092] To a stirred room temperature suspension of Boc-Dap-OH dicyclohexylamine salt (8.00
g, 17.1 mmol) and H-Phe-OMe HCl salt (4.42 g, 20.5 mmol) in CH
2Cl
2 (20 mL) was added diisopropylethylamine (DIEA; 9.13 mL, 51.3 mmol), followed by diethylpyrocarbonate
(DEPC; 5.15 mL, 34.2 mmol). After 10 h, analysis by liquid chromatography/mass spectrometry
(LCMS) showed the reaction was complete. Boc-Dap-Phe-OMe was isolated by flash chromatography
on silica gel (silica gel 40 µm, 60 Å, 3.0 x 17.0 cm) using 2% to 10% MeOH in CH
2Cl
2 as the eluent. A total of 7.45 g of Boc-Dap-Phe-OMe (16.61 mmol, 97% yield) was obtained.
[0093] To a stirred room temperature solution of Boc-Dap-Phe-OMe (4.67 g, 10.4 mmol) in
CH
2Cl
2 (10 mL) was added trifluoroacetic acid (TFA; 10 mL). After 10 h, analysis by LCMS
showed the reaction was complete. The crude oil was purified by preparatory RP-HPLC
with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN
in 0.05% aqueous TFA as the eluent. A total of 2.52 g H-Dap-Phe-OMe (6.23 mmol, 59%)
was obtained as the TFA salt.
[0094] To a stirred room temperature solution of Fmoc-Ser(Bzl)-OH (2.82 g, 6.76 mmol) and
H-Dil-OtBu hydrochloride (2.00 g, 6.76 mmol) in ethyl acetate (EtOAc; 15 mL) was added
DIEA (2.17 mL, 12.2 mmol). The solution was cooled to (0 °C) and stirred for 20 min.
DIEA (2.17 mL, 12.2 mmol) was added to the reaction mixture. The solution was cooled
to (0 °C) and stirred for 20 min. 2-Chloro-1-methylpyridinium iodide (CMPI; 2.76 g,
10.8 mmol) was added to the reaction mixture and the reaction mixture was allowed
to reach room temperature. After 12 h, analysis by LCMS showed the reaction was complete.
The crude reaction was washed with 0.1 M HCl (150 mL x 2). The organic fraction was
dried over a pad of magnesium sulfate, filtered and concentrated in vacuo. Fmoc-Ser(Bzl)-Dil-OtBu
was isolated by flash chromatography on silica gel (silica gel 40 µm, 60 Å, 3.0 x
17.0 cm) using 18% to 90% EtOAc in hexanes as the eluent. A total of 3.75 g of Fmoc-Ser(Bzl)-Dil-OtBu
(5.69 mmol, 84% yield) was obtained.
[0095] To a stirred room temperature solution of Fmoc-Ser(Bzl)-Dil-OtBu (1.79 g, 2.72 mmol)
in MeCN (5 mL) was added piperidine (4 mL). After 5 h, analysis by LCMS showed the
reaction was complete. The crude reaction mixture was extracted with Hexanes and the
MeCN layer was concentrated in vacuo to yield crude H-Ser(Bzl)-Dil-OtBu that was used
without further purification.
[0096] To a stirred room temperature suspension of crude H-Ser(Bzl)-Dil-OtBu and Dov (0.790
g, 5.44 mmol) in DMF (10 mL) was added DIEA (1.45 mL, 8.16 mmol), followed by HATU
(2.07 g, 5.44 mmol). After 5 h, analysis by LCMS showed that the reaction was complete.
The crude reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and
extracted with EtOAc (40 mL x 2). The combined organic fractions were washed with
brine, dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 0.882 g Dov-Ser(Bzl)-Dil-OtBu (1.30 mmol, 48%) was obtained as the TFA
salt.
[0097] To a room temperature solution of Dov-Ser(Bzl)-Dil-OtBu (0.288 g, 0.425 mmol) in
CH
2Cl
2 (5 mL) was added TFA (4 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Dov-Ser(Bzl)-Dil-OH
TFA salt that was used without further purification.
[0098] To a stirred room temperature suspension of crude Dov-Ser(Bzl)-Dil-OH TFA salt and
H-Dap-Phe-OMe TFA salt (0.163 g, 0.467 mmol) in DMF (10 mL) was added DIEA (0.303
mL, 1.70 mmol), followed by HATU (0.323 g, 0.850 mmol). After 6 h, analysis by LCMS
showed the reaction was complete. The crude reaction mixture was diluted with saturated
sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined organic
fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.217 g Dov-Ser(Bzl)-Dil-Dap-Phe-OMe (0.228
mmol, 54%) was obtained as the TFA salt.
[0099] A stirred room temperature suspension of Dov-Ser(Bzl)-Dil-Dap-Phe-OMe TFA salt (0.217
g, 0.228 mmol) and palladium on activated charcoal (10% Pd basis, 0.174 g) in MeOH
(5 mL) was hydrogenated under refluxing conditions. After 48 h, analysis by LCMS showed
the reaction was complete. The crude reaction mixture was filtered over a pad of diatomaceous
earth and the filtrate was concentrated. The crude oil was purified by preparatory
RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to
90% MeCN in 0.05% aqueous TFA as the eluent. A total of 0.104 g of the title compound
was obtained as the TFA salt (0.121 mmol, 47%). LCMS RT = 2.32 min (Method A); ESI-MS
m/z 748.72 [M+H]
+; HRMS m/z 748.4846 [C
39H
65N
5O
9+H]
+.
Example 2
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0100]

[0101] To a stirred room temperature solution of Fmoc-Thr(Bzl)-OH (2.92 g, 6.76 mmol) and
H-Dil-OtBu hydrochloride (2.00 g, 6.76 mmol) in EtOAc (15 mL) was added DIEA (2.17
mL, 12.2 mmol). The solution was cooled (0 °C) and stirred for 20 min. DIEA (2.17
mL, 12.2 mmol) was added to the reaction mixture. The solution was cooled (0 °C) and
stirred for 20 min. CMPI (2.76 g, 10.8 mmol) was added to the reaction mixture and
the reaction mixture was allowed to reach room temperature. After 12 h, analysis by
LCMS showed the reaction was complete. The crude reaction was washed with 0.1 M HCl
(100 mL x 2). The organic fraction was dried over a pad of magnesium sulfate, filtered
and concentrated in vacuo. Fmoc-Thr(Bzl)-Dil-OtBu was isolated by flash chromatography
on silica gel (silica gel 40 µm, 60 Å, 3.0 x 17.0 cm) using 18% to 90% EtOAc in hexanes
as the eluent. A total of 3.71 g of Fmoc-Thr(Bzl)-Dil-OtBu (5.51 mmol, 82% yield)
was obtained.
[0102] To a stirred room temperature solution of Fmoc-Thr(Bzl)-Dil-OtBu (3.71 g, 5.51 mmol)
in MeCN (5 mL) was added piperidine (4 mL). After 5 h, analysis by LCMS showed the
reaction was complete. The crude reaction mixture was extracted with Hexanes and the
MeCN layer was concentrated in vacuo to yield crude H-Thr(Bzl)-Dil-OtBu that was used
without further purification.
[0103] To a stirred room temperature suspension of crude H-Thr(Bzl)-Dil-OtBu and Dov (1.60
g, 11.0 mmol) in DMF (20 mL) was added DIEA (2.95 mL, 16.5 mmol), followed by HATU
(4.19 g, 11.0 mmol). After 6 h, analysis by LCMS showed that the reaction was complete.
The crude reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and
extracted with EtOAc (40 mL x 2). The combined organic fractions were washed with
brine, dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 1.09 g Dov-Ser(Bzl)-Dil-OtBu (1.58 mmol, 29%) was obtained as the TFA salt.
[0104] To a room temperature solution of Dov-Thr(Bzl)-Dil-OtBu TFA salt (0.331 g, 0.478
mmol) in CH
2Cl
2 (5 mL) was added TFA (4 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Dov-Thr(Bzl)-Dil-OH
TFA salt that was used without further purification.
[0105] To a stirred room temperature suspension of crude Dov-Thr(Bzl)-Dil-OH TFA salt and
H-Dap-Phe-OMe TFA salt (0.183 g, 0.526 mmol) in DMF (10 mL) was added DIEA (0.341
mL, 1.92 mmol), followed by HATU (0.364 g, 0.957 mmol). After 24 h, analysis by LCMS
showed the reaction was complete. The crude reaction mixture was diluted with saturated
sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined organic
fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.290 g Dov-Thr(Bzl)-Dil-Dap-Phe-OMe (0.300
mmol, 63%) was obtained as the TFA salt.
[0106] A stirred room temperature suspension of Dov-Thr(Bzl)-Dil-Dap-Phe-OMe TFA salt (0.290
g, 0.300 mmol) and palladium on activated charcoal (10% Pd basis, 0.232 g) in MeOH
(5 mL) was hydrogenated. After 24 h, analysis by LCMS showed the reaction was complete.
The crude reaction mixture was filtered over a pad of diatomaceous earth and the filtrate
was concentrated. The crude oil was purified by preparatory RP-HPLC with a Phenomenex
Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous
TFA as the eluent. A total of 0.129 g of the title compound was obtained as the TFA
salt (0.147 mmol, 43%). LCMS RT = 2.40 min (Method A); ESI-MS m/z 762.75 [M+H]
+; HRMS m/z 762.5009 [C
40H
67N
5O
9+H]
+.
Example 3
(S)-2-(dimethylamino)-N-((S)-3-hydroxy-1-(((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide
[0107]

[0108] To a stirred room temperature suspension of Boc-Dap-OH dicyclohexylamine salt (10.0
g, 21.4 mmol) and 2-(2-pyridyl)ethylamine (3.83 mL, 32.0 mmol) in CH
2Cl
2 (20 mL) was added DIEA (11.4 mL, 64.1 mmol), followed by DEPC (4.83 mL, 32.0 mmol).
After overnight stirring, analysis by LCMS showed the reaction was complete. Boc-Dap-2-(2-pyridyl)ethylamine
was isolated by flash chromatography on silica gel (silica gel 40 µm, 60 Å, 3.0 x
17.0 cm) using 2% to 10% MeOH/1% NEt
3 in CH
2Cl
2 as the eluent. A total of 7.42 g of Boc-Dap-2-(2-pyridyl)ethylamine (19.0 mmol, 89%
yield) was obtained.
[0109] To a stirred room temperature solution of Boc-Dap-2-(2-pyridyl)ethylamine (7.42 g,
19.0 mmol) in CH
2Cl
2 (10 mL) was added TFA (10 mL). After overnight stirring, analysis by LCMS showed
the reaction was complete. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 4.50 g H-Dap-(2-pyridyl)ethylamine (11.1
mmol, 59%) was obtained as the TFA salt.
[0110] To a room temperature solution of Dov-Ser(Bzl)-Dil-OtBu (0.287 g, 0.423 mmol) in
CH
2Cl
2 (5 mL) was added TFA (4 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Dov-Ser(Bzl)-Dil-OH
TFA salt that was used without further purification.
[0111] To a stirred room temperature suspension of crude Dov-Ser(Bzl)-Dil-OH TFA salt and
H-Dap-2-(2-pyridyl)ethylamine TFA salt (0.136 g, 0.466 mmol) in DMF (10 mL) was added
DIEA (0.302 mL, 1.70 mmol) followed by HATU (0.322 g, 0.847 mmol). After 6 h, analysis
by LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.258 g Dov-Ser(Bzl)-Dil-Dap-2-(2-pyridyl)ethylamine
(0.288 mmol, 68%) was obtained as the TFA salt.
[0112] A stirred room temperature suspension of Dov-Ser(Bzl)-Dil-Dap-2-(2-pyridyl)ethylamine
TFA salt (0.258 g, 0.330 mmol), ammonium formate (0.062 g, 0.991 mmol), and palladium
on activated charcoal (10% Pd basis, 0.100 g) in MeOH (5 mL) was hydrogenated. After
12 h, analysis by LCMS showed the reaction was complete. The crude reaction mixture
was filtered over a pad of diatomaceous earth and the filtrate was concentrated. The
crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 0.014 g of the title compound was obtained as the TFA salt (0.017 mmol,
5%). LCMS RT = 1.76 min (Method A); ESI-MS m/z 691.56 [M+H]
+; HRMS m/z 691.4755 [C
36H
62N
6O
7+H]
+.
Example 4
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0113]

[0114] To a room temperature solution of Dov-Thr(Bzl)-Dil-OtBu (0.357 g, 0.618 mmol) in
CH
2Cl
2 (5 mL) was added TFA (4 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Dov-Thr(Bzl)-Dil-OH
TFA salt that was used without further purification.
[0115] To a stirred room temperature suspension of crude Dov-Thr(Bzl)-Dil-OH TFA salt and
H-Dap-2-(2-pyridyl)ethylamine TFA salt (0.198 g, 0.680 mmol) in DMF (10 mL) was added
DIEA (0.441 mL, 2.47 mmol), followed by HATU (0.470 g, 1.24 mmol) and HOBt (0.189
g, 1.24 mmol). After 6 h, analysis by LCMS showed the reaction was complete. The crude
reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and extracted
with EtOAc (40 mL x 2). The combined organic fractions were washed with brine, dried
over a pad of magnesium sulfate, filtered, and concentrated in vacuo. The crude oil
was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column
(150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent. A total of
0.356 g Dov-Thr(Bzl)-Dil-Dap-2-(2-pyridyl)ethylamine (0.392 mmol, 63%) was obtained
as the TFA salt.
[0116] A stirred room temperature suspension of Dov-Thr(Bzl)-Dil-Dap-2-(2-pyridyl)ethylamine
TFA salt (0.356 g, 0.392 mmol), ammonium formate (0.085 g, 1.35 mmol), and palladium
on activated charcoal (10% Pd basis, 0.175 g) in MeOH (5 mL) was hydrogenated. After
12 h, analysis by LCMS showed the reaction was complete. The crude reaction mixture
was filtered over a pad of diatomaceous earth and the filtrate was concentrated. The
crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 0.010 g of the title compound was obtained as the TFA salt (0.012 mmol,
3%). LCMS RT = 1.72 min (Method A); ESI-MS m/z 705.56 [M+H]
+; 728.33 [M+Na]
+; HRMS m/z 705.4917 [C
37H
64N
6O
7+H]
+.
Example 5
(2S)-2-(dimethylamino)-N-((2S)-3-hydroxy-1-(((3R,4S,5S)-3-methoxy-1-((2S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(piperidin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-3-methylbutanamide
[0117]

[0118] The title compound was obtained as a byproduct of the hydrogenation step in Example
3. A total of 0.010 g of the title compound was obtained as the TFA salt (0.001 mmol).
LCMS RT = 1.83 min (Method A); ESI-MS m/z 697.76 [M+H]
+; HRMS m/z 697.5226 [C
36H
68N
6O
7+H]
+.
Example 6
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-3-methoxy-1-((2S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(piperidin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0119]

[0120] The title compound was obtained as a byproduct of the hydrogenation step in Example
4. A total of 0.010 g of the title compound was obtained as the TFA salt (0.012 mmol).
LCMS RT = 1.81 min (Method A); ESI-MS m/z 711.43 [M+H]
+; HRMS m/z 711.5389 [C
37H
70N
6O
7+H]
+.
Example 7
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0121]

[0122] To a stirred room temperature solution of (2
S,3
S)-Fmoc-Abu(3-N
3)-OH (1.00 g, 2.74 mmol) and H-Dil-OtBu hydrochloride (0.810 g, 2.74 mmol) in EtOAc
(10 mL) was added DIEA (0.880 mL, 4.93 mmol). The solution was cooled (0 °C) and stirred
for 20 min. DIEA (0.880 mL, 4.93 mmol) was added to the reaction mixture. The solution
was cooled (0 °C) and stirred for 20 min. CMPI (1.12 g, 4.38 mmol) was added to the
reaction mixture and the reaction mixture was allowed to reach room temperature. After
12 h, analysis by LCMS showed the reaction was complete. The crude reaction was washed
with 0.1 M HCl (100 mL x 2), followed by brine (20 mL x 2). The organic fraction was
dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo to yield
crude Fmoc-Abu(3-N
3)-Dil-OtBu (1.12 g, 1.84 mmol) that was used without further purification.
[0123] To a stirred room temperature solution of Fmoc-Abu(3-N
3)-Dil-OtBu (1.00 g, 1.65 mmol) in MeCN (10 mL) was added piperidine (2 mL). After
5 h, analysis by LCMS showed the reaction was complete. To the crude reaction mixture
was extracted with Hexanes and the MeCN layer was concentrated in vacuo to yield crude
H-Abu(3-N
3)-Dil-OtBu that was used without further purification.
[0124] To a stirred room temperature suspension of crude H-Abu(3-N
3)-Dil-OtBu and Dov (0.478 g, 3.29 mmol) in DMF (10 mL) was added DIEA (0.880 mL ,
4.94 mmol), followed by HATU (1.25 g, 3.29 mmol). After 6 h, analysis by LCMS showed
that the reaction was complete. The crude reaction mixture was diluted with saturated
sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined organic
fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.670 g Dov-Abu(3-N
3)-Dil-OtBu (1.07 mmol, 65%) was obtained as the TFA salt.
[0125] To a room temperature solution of Dov-Abu(3-N
3)-Dil-OtBu TFA salt (0.289 g, 0.425 mmol) in CH
2Cl
2 (5 mL) was added TFA (5 mL). After 12 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Dov-Abu(3-N
3)-Dil-OH TFA salt that was used without further purification.
[0126] To a stirred room temperature suspension of crude Dov-Abu(3-N
3)-Dil-OH TFA salt (1.04 g, 1.82 mmol) and H-Dap-Phe-OMe TFA salt (1.59 g, 3.44 mmol)
in DMF (10 mL) was added DIEA (1.18 g, 1.60 mL, 9.11 mmol), followed by the addition
of HATU (1.74 g, 4.56 mmol). After 10 h, analysis by LCMS showed the reaction was
complete. The crude reaction mixture was diluted with saturated sodium bicarbonate
(10 mL) and extracted with EtOAc (20 mL x 3). The combined organic fractions were
washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini
NX-C18 10µ 110 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous formic
acid. A total of 935 mg of the title compound was obtained as the formic acid salt
(1.12 mmol, 49%). LCMS RT = 1.09 min (Method A); ESI-MS m/z 787.53 [M+H]
+; HRMS m/z 787.5072 [C
40H
66N
8O
8+H]
+.
Example 8
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0127]

[0128] To a stirred room temperature solution of Fmoc-Dpr(Boc)-OH (1.44 g, 3.38 mmol) and
H-Dil-OtBu hydrochloride (1.00 g, 3.38 mmol) in EtOAc (10 mL) was added DIEA (1.08
mL, 6.08 mmol). The solution was cooled to (0 °C) and stirred for 20 min. Additional
DIEA (1.08 mL, 6.08 mmol) was added to the reaction mixture and the 0 °C solution
was stirred for 20 min. CMPI (1.38 g, 5.41 mmol) was then added to the reaction mixture
and the reaction mixture was allowed to warm to room temperature. After 12 h, analysis
by LCMS showed the reaction was complete. The crude reaction was washed with 0.1 M
HCl (100 mL x 2), followed by brine (20 mL x 2). The organic fraction was dried over
a pad of magnesium sulfate, filtered, and concentrated in vacuo. Fmoc-Dpr(Boc)-Dil-OtBu
was isolated by flash chromatography on silica gel (silica gel 40 µm, 60 Å, 3.0 x
17.0 cm) using 18% to 90% EtOAc in Hexanes as the eluent. A total of 1.27 g of Fmoc-Dpr(Boc)-Dil-OtBu
(1.90 mmol, 56% yield) was obtained.
[0129] To a stirred room temperature solution Fmoc-Dpr(Boc)-Dil-OtBu (1.27 g, 1.90 mmol)
in MeCN (10 mL) was added piperidine (2 mL). After 5 h, analysis by LCMS showed the
reaction was complete. The crude reaction mixture was extracted with hexanes and the
MeCN layer was concentrated in vacuo to yield crude H-Dpr(Boc)-Dil-OtBu that was used
without further purification.
[0130] To a stirred room temperature suspension of crude H-Dpr(Boc)-Dil-OtBu and Dov (0.552
g, 3.80 mmol) in DMF (10 mL) was added DIEA (1.02 mL, 5.70 mmol), followed by HATU
(1.45 g, 3.80 mmol). After 6 h, analysis by LCMS showed that the reaction was complete.
The crude reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and
extracted with EtOAc (40 mL x 2). The combined organic fractions were washed with
brine, dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 0.598 g Dov-Dpr(Boc)-Dil-OtBu (0.871 mmol, 46%) was obtained as the TFA
salt.
[0131] To a room temperature solution Dov-Dpr(Boc)-Dil-OtBu TFA salt (1.52 g, 2.65 mmol)
in CH
2Cl
2 (10 mL) was added TFA (5 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Dov-Dpr-Dil-OH
TFA salt that was used without further purification.
[0132] To a stirred room temperature suspension of Dov-Dpr-Dil-OH TFA salt (1.00 g, 1.89
mmol) and Fmoc-OSu (0.891 g, 2.64 mmol) in CH
2Cl
2 (10 mL) was added DIEA (0.460 mL, 2.64 mmol). After 12 h, analysis by LCMS showed
the reaction was complete. Volatile organics were evaporated in vacuo. The crude oil
was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column
(150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous formic acid as the eluent. A total
of 1.49 g of enriched Dov-Dpr(Fmoc)-Dil-OH was obtained as the formic acid salt.
[0133] To a stirred 23 °C suspension of Dov-Dpr(Fmoc)-Dil-OH formic acid salt (1.20 g, 1.75
mmol) and H-Dap-Phe-OMe TFA salt (0.982 g, 2.13 mmol) in DMF (10 mL) was added DIEA
(0.970 g, 1.30 mL, 7.514 mmol) followed by the addition of HATU (1.43 g, 3.76 mmol).
After 10 h, analysis by LCMS showed the reaction was complete. The crude reaction
was diluted with saturated sodium bicarbonate (10 mL) and extracted with EtOAc (20
mL x 3). The combined organic fractions were washed with brine, dried over a pad of
magnesium sulfate, filtered, and concentrated in vacuo. The crude oil was purified
by preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30
mm) using 10% to 90% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 1.01 g of Dov-Dpr(Fmoc)-Dil-Dap-Phe-OMe (1.04 mmol, 56%)
was obtained.
[0134] To a stirred 23 °C solution of Dov-Dpr(Fmoc)-Dil-Dap-Phe-OMe (1.01 g, 1.04 mmol)
in acetonitrile (10 mL) was added piperidine (5 mL). After 3 h, analysis by LCMS showed
the reaction was complete. To the crude reaction solution was added hexanes. The acetonitrile
layer was concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC
with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN
in 0.1% aqueous formic acid as the eluent. A total of 413 g of the title compound
was obtained as the formic acid salt (0.521 mmol, 50%). LCMS RT = 2.10 min (Method
A); ESI-MS m/z 747.84 [M+H]
+; HRMS m/z 747.5008 [C
39H
66N
6O
8+H]
+.
Example 9
(S)-N-((S)-3-amino-1-(((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-1-oxopropan-2-yl)-2-(dimethylamino)-3-methylbutanamide
[0135]

[0136] To a stirred room temperature suspension of crude Dov-Dpr(Fmoc)-Dil-OH and H-Dap-2-(2-pyridyl)ethylamine
TFA salt (0.230 g, 0.789 mmol) in DMF (10 mL) was added DIEA (0.511 mL, 2.87 mmol),
followed by HATU (0.545 g, 1.43 mmol). After 6 h, analysis by LCMS showed the reaction
was complete. The crude reaction mixture was diluted with saturated sodium bicarbonate
(10 mL) and extracted with EtOAc (25 mL x 3). The combined organic fractions were
washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 0.150 g of Dov-Dpr(Fmoc)-Dil-Dap-2-(2-pyridyl)ethylamine was
obtained as the TFA salt (0.146 mmol, 20%).
[0137] To a stirred room temperature solution Dov-Dpr(Fmoc)-Dil-Dap-2-(2-pyridyl)ethylamine
TFA salt (0.150 g, 0.146 mmol) in MeCN (10 mL) was added piperidine (2 mL). After
5 h, analysis by LCMS showed the reaction was complete. The crude reaction mixture
was extracted with hexanes and the MeCN layer was concentrated in vacuo. The crude
oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å
column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent. A total
of 0.089 g of the title compound was obtained as the TFA salt (0.111 mmol, 75%). LCMS
RT = 1.52 min (Method A); ESI-MS m/z 690.67 [M+H]
+; HRMS m/z 690.4917 [C
36H
63N
7O
6+H]
+.
Example 10
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0138]

[0139] To a stirred room temperature solution of N-Boc-4-Azido-Alanine dicyclohexylamine
salt (1.02 g, 2.47 mmol) and H-Dil-OtBu hydrochloride (0.730 g, 2.74 mmol) in EtOAc
(10 mL) was added DIEA (0.792 mL, 4.44 mmol). The solution was cooled (0 °C) and stirred
for 20 min. DIEA (0.792 mL, 4.44 mmol) was added to the reaction mixture. The solution
was cooled (0 °C) and stirred for 20 min. CMPI (1.01 g, 3.95 mmol) was added to the
reaction mixture and the reaction mixture was allowed to reach room temperature. After
12 h, analysis by LCMS showed the reaction was complete. The crude reaction was washed
with 0.1 M HCl (100 mL x 2), followed by brine (20 mL x 2). The organic fraction was
dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo to yield
crude N-Boc-4-Azido-Ala-Dil-OtBu (1.08 g, 2.29 mmol) that was used without further
purification.
[0140] To a room temperature solution of N-Boc-4-Azido-Ala-Dil-OtBu (1.08 g, 2.29 mmol)
in CH
2Cl
2 (5 mL) was added TFA (3 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude H-4-Azido-Ala-Dil-OH
TFA salt that was used without further purification.
[0141] To a stirred room temperature suspension of Dov (0.739 g, 5.09 mmol) in DMF (10 mL)
was added DIEA (1.36 mL, 7.63 mmol), followed by HATU (1.95 g, 5.09 mmol). After 10
min crude H-4-Azido-Ala-Dil-OH was added to the reaction mixture. After 6 h, analysis
by LCMS showed that the reaction was complete. The crude oil was purified by preparatory
RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to
90% MeCN in 0.05% aqueous TFA as the eluent. A total of 0.130 g Dov-4-Azido-Ala-Dil-OH
(0.261 mmol, 10%) was obtained as the TFA salt.
[0142] To a stirred room temperature suspension of Dov-4-Azido-Ala-Dil-OH TFA salt (0.130
g, 0.261) and H-Dap-Phe-OMe TFA salt (0.205 g, 0.588 mmol) in DMF (10 mL) was added
DIEA (0.140 mL, 0.783 mmol), followed by HATU (0.198 g, 0.522 mmol). After 6 h, analysis
by LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.015 g of the title compound was obtained
as the TFA salt (0.017 mmol, 7%). LCMS RT = 2.36 min (Method A); ESI-MS m/z 773.48
[M+H]
+; HRMS m/z 773.4916 [C
39H
64N
8O
8+H]
+.
Example 11
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-4-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0143]

[0144] To a stirred room temperature solution of N-Boc-4-Azido-homoalanine dicyclohexylamine
salt (1.01 g, 2.37 mmol) and H-Dil-OtBu hydrochloride (0.700 g, 2.37 mmol) in EtOAc
(10 mL) was added DIEA (0.759 mL, 4.26 mmol). The solution was cooled (0 °C) and stirred
for 20 min. DIEA (0.759 mL, 4.26 mmol) was added to the reaction mixture. The solution
was cooled (0 °C) and stirred for 20 min. CMPI (0.967 g, 3.79 mmol) was added to the
reaction mixture and the reaction mixture was allowed to reach room temperature. After
12 h, analysis by LCMS showed the reaction was complete. The crude reaction was washed
with 0.1 M HCl (100 mL x 2), followed by brine (20 mL x 2). The organic fraction was
dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo to yield
crude N-Boc-4-Azido-homoAla-Dil-OtBu (1.09 g, 2.25 mmol) that was used without further
purification.
[0145] To a room temperature solution of N-Boc-4-Azido-homoAla-Dil-OtBu (1.09 g, 2.25 mmol)
in CH
2Cl
2 (5 mL) was added TFA (3 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude H-4-Azido-homoAla-Dil-OH
TFA salt that was used without further purification.
[0146] To a stirred room temperature suspension of Dov (0.652 g, 4.49 mmol) in DMF (10 mL)
was added DIEA (1.20 mL, 6.73 mmol), followed by HATU (1.71 g, 4.49 mmol). After 10
min crude H-4-Azido-homoAla-Dil-OH TFA salt was added to the reaction mixture. After
6 h, analysis by LCMS showed that the reaction was complete. The crude oil was purified
by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30
mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent. A total of 0.127 g Dov-4-Azido-homoAla-Dil-OH
(0.223 mmol, 10%) was obtained as the TFA salt.
[0147] To a stirred room temperature suspension of Dov-4-Azido-homoAla-Dil-OH TFA salt (0.127
g, 0.223) and H-Dap-Phe-OMe TFA salt (0.198 g, 0.568 mmol) in DMF (10 mL) was added
DIEA (0.140 mL, 0.783 mmol), followed by HATU (0.198 g, 0.522 mmol). After 6 h, analysis
by LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.015 g of the title compound was obtained
as the TFA salt (0.017 mmol, 7%). LCMS RT = 2.38 min (Method A); ESI-MS m/z 787.49
[M+H]
+; HRMS m/z 787.5078 [C
40H
66N
8O
8+H]
+.
Example 12
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0148]

[0149] To a stirred room temperature solution of Fmoc-Dab(Boc)-OH (1.54 g, 3.38 mmol) and
H-Dil-OtBu hydrochloride (1.00 g, 3.38 mmol) in EtOAc (10 mL) was added DIEA (1.08
mL, 6.08 mmol). The solution was cooled (0 °C) and stirred for 20 min. Additional
DIEA (1.08 mL, 6.08 mmol) was added to the reaction mixture, and the 0 °C solution
was stirred for 20 min. Then CMPI (1.38 g, 5.41 mmol) was added to the reaction mixture
and the reaction mixture was allowed to warm to room temperature. After 12 h, analysis
by LCMS showed the reaction was complete. The crude reaction was washed with 0.1 M
HCl (100 mL x 2), followed by brine (20 mL x 2). The organic fraction was dried over
a pad of magnesium sulfate, filtered, and concentrated in vacuo. Fmoc-Dab(Boc)-Dil-OtBu
was isolated by flash chromatography on silica gel (silica gel 40 µm, 60 Å, 3.0 x
17.0 cm) using 18% to 90% EtOAc in hexanes as the eluent. A total of 1.18 g of Fmoc-Dpr(Boc)-Dil-OtBu
(1.73 mmol, 51% yield) was obtained.
[0150] To a stirred room temperature solution Fmoc-Dab(Boc)-Dil-OtBu (1.18 g, 1.73 mmol)
in MeCN (10 mL) was added piperidine (2 mL). After 5 h, analysis by LCMS showed the
reaction was complete. The crude reaction mixture was extracted with Hexanes and the
MeCN layer was concentrated in vacuo to yield crude H-Dab(Boc)-Dil-OtBu that was used
without further purification.
[0151] To a stirred room temperature suspension of crude H-Dab(Boc)-Dil-OtBu and Dov (0.502
g, 3.46 mmol) in DMF (10 mL) was added DIEA (0.925 mL , 5.19 mmol), followed by HATU
(1.32 g, 3.46 mmol). After 6 h, analysis by LCMS showed that the reaction was complete.
The crude reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and
extracted with EtOAc (40 mL x 2). The combined organic fractions were washed with
brine, dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 0.410 g of Dov-Dab(Boc)-Dil-OtBu (0.583 mmol, 34%) was obtained as the
TFA salt.
[0152] To a room temperature solution Dov-Dab(Boc)-Dil-OtBu TFA salt (0.240 g, 0.419 mmol)
in CH
2Cl
2 (5 mL) was added TFA (2 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Dov-Dab-Dil-OH
TFA salt that was used without further purification.
[0153] To a stirred room temperature suspension of Dov-Dab-Dil-OH TFA salt (0.175 g, 0.406
mmol) and Fmoc-OSu (0.151 g, 0.447 mmol) in CH
2Cl
2 (5 mL) was added DIEA (0.080 mL, 0.447 mmol). After 12 h, analysis by LCMS showed
the reaction was complete. Volatile organics were evaporated in vacuo. The crude reaction
mixture was dissolved in EtOAc and was washed with 0.1 M HCl (100 mL x 2), followed
by brine (20 mL x 2). The organic fraction was dried over a pad of magnesium sulfate,
filtered, and concentrated in vacuo to yield crude Dov-Dab(Fmoc)-Dil-OH that was used
without further purification.
[0154] To a stirred room temperature suspension of crude Dov-Dab(Fmoc)-Dil-OH (0.363 g,
0.556 mmol) and H-Dap-Phe-OMe TFA salt (0.194 g, 0.420 mmol) in DMF (10 mL) was added
DIEA (0.291 mL, 1.67 mmol), followed by HATU (0.424 g, 1.11 mmol). After 10 h, analysis
by LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (30 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.2% aqueous formic acid as the eluent. A total of 449 mg of enriched Dov-Dab(Fmoc)-Dil-Dap-Phe-OMe
was obtained as the formic acid salt.
[0155] To a stirred room temperature solution enriched Dov-Dab(Fmoc)-Dil-Dap-Phe-OMe formic
acid salt (0.449 g) in MeCN (10 mL) was added piperidine (5 mL). After 10 h, analysis
by LCMS showed the reaction was complete. The crude reaction mixture was extracted
with hexanes and the MeCN layer was concentrated in vacuo. The crude oil was purified
by RP-HPLC with a Phenomenex Gemini NX C18 10µ Max-RP 110 Å column (150 x 30 mm) using
10% to 90% MeCN in 0.1% aqueous formic acid as the eluent. A total of 43.0 g of the
title compound was obtained as the formic acid salt (0.053 mmol, 13%). LCMS RT = 1.24
min (Method B); ESI-MS m/z 761.57 [M+H]
+; HRMS m/z 761.5165 [C
40H
68N
6O
8+H]
+.
Reference Example 13
(S)-2-((S)-2-(aminooxy)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N,3-dimethylbutanamide
[0156]

[0157] To a solution of H-Dil-OtBu hydrochloride (0.60 g, 2.03 mmol) and Fmoc-Val-OH (0.829
g, 2.44 mmol) stirring in EtOAc (3 mL) was added DIEA (0.65 mL, 3.7 mmol). The reaction
was cooled to 0 °C and stirred for 20 min, followed by addition of DIEA (0.65 mL,
3.7 mmol). The reaction mixture was cooled (0 °C) for another 20 min, followed by
the addition of CMPI (0.83 g, 3.7 mmol). After 8 h, analysis by LCMS showed the reaction
was complete. The reaction mixture was washed with 1 M HCl (25 mL x 2) and brine (50
mL). The organic phase was dried over magnesium sulfate, filtered, and concentrated
in vacuo. Fmoc-Val-Dil-OtBu was isolated by flash chromatography on silica gel (silica
gel 40 µm, 60 Å, 3.0 x 17.0 cm) using 18% to 90% EtOAc in hexanes as the eluent. A
total of 1.1 g of Fmoc-Val-Dil-OtBu (1.9 mmol, 93% yield) was obtained.
[0158] To a stirred room temperature suspension of Fmoc-Val-Dil-OtBu (0.883 g, 1.52 mmol)
and Boc-Dap-2-(2-pyridyl)ethylamine (0.451 g, 1.52 mmol) in CH
2Cl
2 (10 mL) was added TFA (5 mL). After 8 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Fmoc-Val-Dil-OH
and H-Dap-2-(2-pyridyl)ethylamine TFA salt, which were used without further purification.
[0159] To a stirred room temperature suspension of crude H-Dap-2-(2-pyridyl)ethylamine TFA
salt and Fmoc-Val-Dil-OH in EtOAc (2 mL) was added DIEA (1.10 mL, 6.08 mmol), followed
by DEPC (0.92 mL, 6.08 mmol). After 15 h, analysis by LCMS showed the reaction was
complete. The reaction was washed with a saturated NaHCO
3 solution (50 mL) followed by water (50 mL x 2). The organic fraction was filtered
through a pad of magnesium sulfate and concentrated in vacuo. The resulting viscous
oil was purified by flash chromatography on silica gel (silica gel 40 µm, 60 Å, 23
x 123 mm) using 5% to 10% MeOH in CH
2Cl
2 as the eluent. A total of 0.888 g of Fmoc-Val-Dil-Dap-2-(2-pyridyl)ethylamine (1.11
mmol, 73% yield) was obtained.
[0160] To a stirred room temperature solution of Fmoc-Val-Dil-Dap-2-(2-pyridyl)ethylamine
(1.75 g, 2.19 mmol) in CH
2Cl
2 (5 mL) was added piperidine (5 mL). After 8 h, analysis by LCMS showed the reaction
was complete. Volatile organics were evaporated in vacuo to yield crude H-Val-Dil-Dap-2-(2-pyridyl)ethylamine
that was used without further purification.
[0161] To a stirred room temperature suspension of crude H-Val-Dil-Dap-2-(2-pyridyl)ethylamine
and N-Boc-N-hydroxyVal-OH (0.390 g, 1.67 mmol) in DMF (5 mL) was added DIEA (0.797
mL, 5.02 mmol), followed by HATU (1.28 g, 3.34 mmol). After 8 h, analysis by LCMS
showed that the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (50 mL x 3). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo to yield 0.563 g of crude N-Boc-N-hydroxyVal-Val-Dil-Dap-2-(2-pyridyl)ethylamine
(0.712 mmol, 43%) that was used without further purification.
[0162] To a room temperature solution of N-Boc-N-hydroxyVal-Val-Dil-Dap-2-(2-pyridyl)ethylamine
(0.563 g, 0.712 mmol) in DMF (2 mL) was added TFA (2 mL). After 2 h, analysis by LCMS
showed the reaction was complete. Volatile organics were evaporated in vacuo. The
crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 0.209 g of the title compound was obtained as the TFA salt (0.302 mmol,
43%). LCMS RT = 1.70 min (Method A); ESI-MS m/z 691.53 [M+H]
+; HRMS m/z 691.4755 [C
36H
62N
6O
7+H]
+.
Reference Example 14
((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-hydroxypropanamido)-N,3-dimethylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalanine
[0163]

[0164] To a stirred room temperature solution of H-Ser(Bzl)-OH (0.500 g, 2.56 mmol) and
paraformaldehyde (1.15 g, 38.4 mmol) in MeOH (10 mL) was added HCO
2NH
4 (0.808 g, 12.8 mmol) and palladium on activated charcoal (10% Pd basis, 0.250 g).
After 72 h, analysis by LCMS showed the reaction was complete. The crude reaction
mixture was filtered over a pad of diatomaceous earth and the filtrate was concentrated.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 0.168 g of N,N-dimethylSer(Bzl)-OH (0.498 mmol, 19%) was obtained as the
TFA salt.
[0165] To a stirred room temperature solution of crude Fmoc-Val-Dil-OtBu (13.3 g, 22.8 mmol)
in CH
2Cl
2 (20 mL) was added piperidine (15 mL). After 8 h, analysis by LCMS showed the reaction
was complete. Volatile organics were evaporated in vacuo to yield crude H-Val-Dil-OtBu
that was used without further purification.
[0166] To a stirred room temperature suspension of crude H-Val-Dil-OtBu and N,N-dimethylSer(Bzl)-OH
TFA salt (0.780 g, 3.49 mmol) in DMF (10 mL) was added DIEA (1.25 mL, 6.99 mmol),
followed by HATU (1.77 g, 4.66 mmol). After 6 h, analysis by LCMS showed that the
reaction was complete. The crude reaction mixture was diluted with saturated sodium
bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined organic fractions
were washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 0.220 g of N,N-dimethylSer(Bzl)-Val-Dil-OtBu (0.325 mmol, 14%)
was obtained as the TFA salt.
[0167] To a room temperature solution N,N-dimethylSer(Bzl)-Val-Dil-OtBu TFA salt (0.220
g, 0.325 mmol) in CH
2Cl
2 (5 mL) was added TFA (2 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude N,N-dimethylSer(Bzl)-Val-Dil-OH
TFA salt that was used without further purification.
[0168] To a stirred room temperature suspension of crude N,N-dimethylSer(Bzl)-Val-Dil-OH
TFA salt and H-Dap-Phe-OMe TFA salt (0.166 g, 0.477 mmol) in DMF (5 mL) was added
DIEA (0.207 mL, 1.30 mmol), followed by HATU (0.330 g, 0.868 mmol). After 4 h, analysis
by LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.201 g N,N-dimethylSer(Bzl)-Val-Dil-Dap-Phe-OMe
(0.211 mmol, 49%) was obtained as the TFA salt.
[0169] To a stirred room temperature suspension of N,N-dimethylSer(Bzl)-Val-Dil-Dap-Phe-OMe
TFA salt (0.201 g, 0.211 mmol) and NH
4HCO
2 (2.00 g, 31.7 mmol) in MeOH (6 mL) and water (1.0 mL) was added 10% Pd/C (10 mg).
The solution was stirred vigorously at room temperature. After 10 h, analysis by LCMS
showed the reaction was complete, along with hydrolysis of the methyl ester of phenylalanine.
The reaction mixture was filtered through a pad of a diatomaceous earth and the filtrate
was concentrated. The crude oil was purified by preparatory RP-HPLC with a Phenomenex
Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous
TFA as the eluent. A total of 63.0 mg of the title compound was obtained as the TFA
salt (0.074 mmol, 31%). LCMS RT = 2.01 min (Method A); ESI-MS m/z 734.61 [M+H]
+; HRMS m/z 734.4715 [C
38H
63N
5O
9+H]
+.
Reference Example 15
((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((2S,3R)-2-(dimethylamino)-3-hydroxybutanamido)-N,3-dimethylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalanine
[0170]

[0171] To a stirred room temperature solution of H-Thr(Bzl)-OH (2.00 g, 9.56 mmol) and paraformaldehyde
(9.87 g, 95.6 mmol) in MeOH (40 mL) was added HCO
2NH
4 (3.01 g, 47.8 mmol) and palladium on activated charcoal (10% Pd basis, 1.00 g). After
72 h, analysis by LCMS showed the reaction was complete. The crude reaction mixture
was filtered over a pad of diatomaceous earth and the filtrate was concentrated. The
crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 1.54 g of N,N-dimethylThr(Bzl)-OH (4.38 mmol, 19%) was obtained as the
TFA salt.
[0172] To a stirred room temperature suspension of crude H-Val-Dil-OtBu and N,N-dimethylThr(Bzl)-OH
TFA salt (1.21 g, 5.10 mmol) in DMF (20 mL) was added DIEA (1.82 mL, 10.2 mmol), followed
by HATU (2.59 g, 6.80 mmol). After 6 h, analysis by LCMS showed that the reaction
was complete. The crude reaction mixture was diluted with saturated sodium bicarbonate
(15 mL) and extracted with EtOAc (40 mL x 2). The combined organic fractions were
washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 0.161 g of N,N-dimethylThr(Bzl)-Val-Dil-OtBu (0.234 mmol, 7%)
was obtained as the TFA salt.
[0173] To a room temperature solution N,N-dimethylThr(Bzl)-Val-Dil-OtBu TFA salt (0.220
g, 0.325 mmol) in CH
2Cl
2 (5 mL) was added TFA (2 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude N,N-dimethylThr(Bzl)-Val-Dil-OH
TFA salt that was used without further purification.
[0174] To a stirred room temperature suspension of crude N,N-dimethylThr(Bzl)-Val-Dil-OH
TFA salt and H-Dap-Phe-OMe TFA salt (0.118 g, 0.339 mmol) in DMF (5 mL) was added
DIEA (0.147 mL, 0.927 mmol), followed by HATU (0.235 g, 0.618 mmol). After 4 h, analysis
by LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.186 g N,N-dimethylThr(Bzl)-Val-Dil-Dap-Phe-OMe
(0.193 mmol, 62%) was obtained as the TFA salt.
[0175] To a stirred room temperature suspension of N,N-dimethylThr(Bzl)-Val-Dil-Dap-Phe-OMe
TFA salt (0.186 g, 0.193 mmol) and NH
4HCO
2 (2.00 g, 31.7 mmol) in MeOH (6 mL) and water (1.0 mL) was added 10% Pd/C (100 mg).
The solution was stirred vigorously at room temperature. After 72 h, analysis by LCMS
showed the reaction was complete, along with hydrolysis of the methyl ester of phenylalanine.
The reaction mixture was filtered through a pad of diatomaceous earth and the filtrate
was concentrated. The crude oil was purified by preparatory RP-HPLC with a Phenomenex
Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous
TFA as the eluent. A total of 63.0 mg of the title compound was obtained as the TFA
salt (0.073 mmol, 38%). LCMS RT = 2.04 min (Method A); ESI-MS m/z 748.58 [M+H]
+; HRMS m/z 748.4854 [C
39H
65N
5O
9+H]
+.
Example 16
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylproyanamido)-3-phenylpropanoic
acid
[0176]

[0177] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-OMe TFA salt (60 mg, 0.067 mmol) in MeOH (0.1 mL) and THF (0.1 mL) was
added lithium hydroxide monohydrate (9.6 mg, 0.229 mmol) in water (0.1 mL). After
12 h, analysis by LCMS showed the reaction was complete. The crude oil was purified
by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30
mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent. A total of 55.0 mg of
the title compound was obtained as the TFA salt (0.062 mmol, 93%). LCMS RT = 2.25
min (Method A); ESI-MS m/z 773.45 [M+H]
+; HRMS m/z 773.49119 [C
39H
64N
8O
8+H]
+.
Reference Example 17
(S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((2S,3R)-2-(dimethylamino)-3-hydroxybutanamido)-N,3-dimethylbutanamide
[0178]

[0179] To a stirred room temperature solution of N,N-dimethylThr-Val-Dil-Dap-Phe-OH TFA
salt (40 mg, 0.053 mmol) in CH
2Cl
2 (10 mL) was added ammonium chloride (5.72 mg, 0.107 mmol), DIEA (28.6 µL, 0.160 mmol)
and EDCI (30.3 mg, 0.107 mmol). After 12 h, analysis by LCMS showed the reaction was
complete. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 28.0 mg of the title compound was obtained as the TFA salt
(0.037 mmol, 70%). LCMS RT = 2.14 min (Method A); ESI-MS m/z 747.61 [M+H]
+; HRMS m/z 747.5017 [C
39H
66N
6O
8+H]
+.
Reference Example 18
(S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-hydroxyproyanamido)-N,3-dimethylbutanamide
[0180]

[0181] To a stirred room temperature solution of N,N-dimethylSer-Val-Dil-Dap-Phe-OH TFA
salt (12 mg, 0.016 mmol) in CH
2Cl
2 (10 mL) was added ammonium chloride (1.00 mg, 0.019 mmol), DIEA (3.21 µL, 0.018 mmol)
and EDCI (5.09 mg, 0.018 mmol). After 12 h, analysis by LCMS showed the reaction was
complete. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 10.0 mg of the title compound was obtained as the TFA salt
(0.014 mmol, 83%). LCMS RT = 2.07 min (Method A); ESI-MS m/z 733.63 [M+H]
+; HRMS m/z 733.4866 [C
38H
64N
6O
8+H]
+.
Example 19
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-mercapto-N-methylpropanamido)-3-methoxv-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0182]

[0183] To a stirred room temperature solution of Fmoc-Cys(Trt)-OH (3.96 g, 6.76 mmol) and
H-Dil-OtBu hydrochloride (2.00 g, 6.76 mmol) in EtOAc (15 mL) was added DIEA (2.17
mL, 12.2 mmol). The solution was cooled (0 °C) and stirred for 20 min. Additional
DIEA (2.17 mL, 12.2 mmol) was added to the reaction mixture, and the 0 °C solution
was stirred for 20 min. Then CMPI (2.76 g, 10.8 mmol) was added to the reaction mixture
and the reaction mixture was allowed to reach room temperature. After 12 h, analysis
by LCMS showed the reaction was complete. The crude reaction was washed with 0.1 M
HCl (100 mL x 2), followed by brine (20 mL x 2). The organic fraction was dried over
a pad of magnesium sulfate, filtered and concentrated in vacuo. Fmoc-Cys(Trt)-Dil-OtBu
was isolated by flash chromatography on silica gel (silica gel 40 µm, 60 Å, 3.0 x
17.0 cm) using 18% to 90% EtOAc in hexanes as the eluent. A total of 4.73 g of Fmoc-Cys(Trt)-Dil-OtBu
(5.72 mmol, 85% yield) was obtained.
[0184] To a stirred room temperature solution of Fmoc-Cys(Trt)-Dil-OtBu (2.61 g, 3.16 mmol)
in MeCN (10 mL) was added piperidine (5 mL). After 5 h, analysis by LCMS showed the
reaction was complete. The crude reaction mixture was extracted with hexanes and the
MeCN layer was concentrated in vacuo to yield crude H-Cys(Trt)-Dil-OtBu that was used
without further purification.
[0185] To a stirred room temperature suspension of crude H-Cys(Trt)-Dil-OtBu and Dov (0.916
g, 6.31 mmol) in DMF (15 mL) was added DIEA (1.69 mL, 9.47 mmol), followed by HATU
(2.40 g, 6.31 mmol). After 8 h, analysis by LCMS showed that the reaction was complete.
The crude reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and
extracted with EtOAc (40 mL x 2). The combined organic fractions were washed with
brine, dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 1.40 g Dov-Cys(Trt)-Dil-OtBu (1.66 mmol, 52%) was obtained as the TFA salt.
[0186] To a room temperature solution of Dov-Cys(Trt)-Dil-OtBu TFA salt (1.40 g, 1.66 mmol)
in CH
2Cl
2 (10 mL) was added TFA (5 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude Dov-Cys(Trt)-Dil-OH
TFA salt that was used without further purification.
[0187] To a stirred room temperature suspension of Dov-Cys(Trt)-Dil-OH TFA salt (0.225 g,
285 mmol) and H-Dap-Phe-OMe TFA salt (0.139 g, 0.301 mmol) in DMF (10 mL) was added
DIEA (0.237 mL, 1.33 mmol), followed by HOBt (0.102 g, 0.666 mmol) and HATU (0.253
g, 0.666 mmol). After overnight stirring, analysis by LCMS showed the reaction was
complete. The crude reaction mixture was diluted with saturated sodium bicarbonate
(10 mL) and extracted with EtOAc (50 mL x 3). The combined organic fractions were
washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo and used without further purification.
[0188] To a room temperature solution of Dov-Cys(Trt)-Dil-Dap-Phe-OMe TFA salt (0.568 g,
0.507 mmol) was added TFA (10 mL). After 12 h at 60 °C, analysis by LCMS showed the
reaction was complete. Volatile organics were evaporated in vacuo. The crude oil was
purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150
x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent. A total of 10.0
mg of the title compound was obtained as the disulfide bridge dimer TFA salt (0.011
mmol, 3%). LCMS RT = 2.50 min (Method A); ESI-MS m/z 764.60 [M+H]
+; HRMS m/z 763.4547 z = 2.
Example 20
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-mercapto-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid
[0189]

[0190] To a stirred room temperature solution of Boc-Dap-OH dicyclohexylamine salt (6.47
g, 13.8 mmol) and H-Phe-OtBu HCl salt (3.91 g, 15.2 mmol) in DCM (20 mL) was added
DIEA (8.78 mL, 55.2 mmol), followed by DEPC (3.12 mL, 20.7 mmol). After 8 h, analysis
by LCMS showed the reaction was complete. The volatile organic were evaporated in
vacuo to give crude product that was used without further purification.
[0191] To a stirred room temperature solution of Boc-Dap-Phe-OtBu (5.25 g, 10.7 mmol) in
CH
2Cl
2 (10 mL) was added TFA (10 mL). After 12 h, analysis by LCMS showed the reaction was
complete as a mixture of the free phenylalanine carboxylic acid and the tBu ester.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 2.85 g of H-Dap-Phe-OtBu TFA salt (5.65 mmol) was obtained as an amber
oil and a total of 2.01 g of H-Dap-Phe-OH TFA salt (4.49 mmol) was obtained as a yellow
oil.
[0192] To a stirred room temperature suspension of crude Dov-Cys(Trt)-Dil-OH TFA salt (0.208
g) and H-Dap-Phe-OtBu TFA salt (0.144 g, 0.369 mmol) in DMF (10 mL) was added DIEA
(0.219 mL, 1.23 mmol), followed by HATU (0.234g, 0.615 mmol). After 10 h, analysis
by LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.509 g of enriched Dov-Cys(Trt)-Dil-Dap-Phe-OtBu
was obtained as the TFA salt.
[0193] To a room temperature solution of enriched Dov-Cys(Trt)-Dil-Dap-Phe-OtBu TFA salt
(0.509) was added TFA (5 mL). The solution was heated to 60 °C and stirred for 24
h. After 24 h, analysis by LCMS showed the reaction was complete. Volatile organics
were evaporated in vacuo. The crude oil was purified by preparatory RP-HPLC with a
Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05%
aqueous TFA as the eluent. A total of 56.0 mg of the title compound was obtained as
the TFA salt (0.065 mmol, 25%). LCMS RT = 2.32 min (Method A); ESI-MS m/z 750.60 [M+H]
+; HRMS m/z 750.4460 [C
38H
63N
5O
8S+H]
+.
Example 21
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylpropanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid
[0194]

[0195] To a stirred room temperature suspension of crude Dov-Ser(Bzl)-Dil-OH TFA salt (0.232
g) and H-Dap-Phe-OtBu TFA salt (0.196 g, 0.389 mmol) in DMF (10 mL) was added DIEA
(0.326 mL, 1.83 mmol), followed by HATU (0.348, 0.914 mmol). After 6 h, analysis by
LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.378 g Dov-Ser(Bzl)-Dil-Dap-Phe-OtBu
(0.380 mmol, 98%) was obtained as the TFA salt.
[0196] To a room temperature solution of Dov-Ser(Bzl)-Dil-Dap-Phe-OtBu TFA salt (0.455 g,
0.517 mmol) in CH
2Cl
2 (5 mL) was added TFA (2 mL). After 12 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude of Dov-Ser(Bzl)-Dil-Dap-Phe-OH
TFA salt that was used without further purification.
[0197] A stirred room temperature suspension of crude Dov-Ser(Bzl)-Dil-Dap-Phe-OH TFA salt
from the previous step and palladium on activated charcoal (10% Pd basis, 10.0 mg)
in MeOH (10 mL) was hydrogenated. After 12 h, analysis by LCMS showed the reaction
was complete. The crude reaction mixture was filtered over a pad of diatomaceous earth
and the filtrate was concentrated. The crude oil was purified by preparatory RP-HPLC
with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN
in 0.05% aqueous TFA as the eluent. A total of 0.115 g of the title compound was obtained
as the TFA salt (0.136 mmol, 28%). LCMS RT = 2.10 min (Method A); ESI-MS m/z 734.61
[M+H]
+; HRMS m/z 734.4708 [C
38H
63N
5O
9+H]
+.
Example 22
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid
[0198]

[0199] To a stirred room temperature suspension of crude Dov-Thr(Bzl)-Dil-OH TFA salt (0.180
g) and H-Dap-Phe-OtBu TFA salt (0.148 g, 0.294 mmol) in DMF (10 mL) was added DIEA
(0.246 mL, 1.38 mmol), followed by HATU (0.262, 0.690 mmol). After 6 h, analysis by
LCMS showed the reaction was complete. The crude reaction mixture was diluted with
saturated sodium bicarbonate (10 mL) and extracted with EtOAc (40 mL x 2). The combined
organic fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous TFA as the eluent. A total of 0.298 g Dov-Thr(Bzl)-Dil-Dap-Phe-OtBu
(0.296 mmol, 78%) was obtained as the TFA salt.
[0200] To a room temperature solution of Dov-Thr(Bzl)-Dil-Dap-Phe-OtBu TFA salt (0.298 g,
0.296 mmol) in CH
2Cl
2 (5 mL) was added TFA (2 mL). After 10 h, analysis by LCMS showed the reaction was
complete. Volatile organics were evaporated in vacuo to yield crude of Dov-Thr(Bzl)-Dil-Dap-Phe-OH
TFA salt that was used without further purification.
[0201] A stirred room temperature suspension of crude Dov-Thr(Bzl)-Dil-Dap-Phe-OH TFA salt
from the previous step and palladium on activated charcoal (10% Pd basis, 10.0 mg)
in MeOH (10 mL) was hydrogenated. After 12 h, analysis by LCMS showed the reaction
was complete. The crude reaction mixture was filtered over a pad of diatomaceous earth
and the filtrate was concentrated. The crude oil was purified by preparatory RP-HPLC
with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN
in 0.05% aqueous TFA as the eluent. A total of 0.120 g of the title compound was obtained
as the TFA salt (0.139 mmol, 47%). LCMS RT = 2.22 min (Method A); ESI-MS m/z 748.62
[M+H]
+; HRMS m/z 748.4842 [C
39H
65N
5O
9+H]
+.
Reference Example 23
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-hydroxypropanamido)-N,3-dimethylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylproyanamido)-3-phenylpropanoate
[0202]

[0203] A stirred room temperature suspension of N,N-dimethylSer(Bzl)-Val-Dil-Dap-Phe-OMe
TFA salt (50.0 mg, 0.053 mmol) and palladium on activated charcoal (10% Pd basis,
10 mg) in MeOH (10 mL) was hydrogenated. After 10 h, analysis by LCMS showed the reaction
was complete. The crude reaction mixture was filtered over a pad of diatomaceous earth
and the filtrate was concentrated. The crude oil was purified by preparatory RP-HPLC
with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN
in 0.05% aqueous TFA as the eluent. A total of 8.00 mg of the title compound was obtained
as the TFA salt (0.009 mmol, 18%). LCMS RT = 2.38 min (Method A); ESI-MS m/z 748.57
[M+H]
+; HRMS m/z 748.4849 [C
39H
65N
5O
9+H]
+.
Reference Example 24
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((2S,3R)-2-(dimethylamino)-3-hydroxybutanamido)-N,3-dimethylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0204]

[0205] The title compound may be prepared using methods analogous to those described in
the Examples and general synthetic schemes.
Example 25
(S)-methyl 2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoate
[0206]

[0207] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-OMe TFA salt (10 mg, 0.011 mmol) in THF (0.10 mL) was added trimethylphosphine
in THF (1 M, 0.022 mL, 0.022 mmol). After 4 h, analysis by LCMS showed the reaction
was complete and H
2O (0.05 mL) was added to the reaction mixture. The crude reaction mixture was purified
by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30
mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent. A total of 6.00 mg of
the title compound was obtained as the TFA salt (0.007 mmol, 62%). LCMS RT = 2.12
min (Method A); ESI-MS m/z 761.63 [M+H]
+; HRMS m/z 761.5159 [C
40H
68N
6O
8+H]
+.
Example 26
(S)-2-((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanamido)-3-phenylpropanoic
acid
[0208]

[0209] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-OH TFA salt (10 mg, 0.011 mmol) in THF (0.10 mL) was added trimethylphosphine
in THF (1 M, 0.022 mL, 0.022 mmol). After 4 h, analysis by LCMS showed the reaction
was complete and H
2O (0.05 mL) was added to the reaction mixture. The crude reaction mixture was purified
by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30
mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent. A total of 2.00 mg of
the title compound was obtained as the TFA salt (0.002 mmol, 21%). LCMS RT = 2.02
min (Method A); ESI-MS m/z 747.65 [M+H]
+; HRMS m/z 747.5008 [C
39H
66N
6O
8+H]
+.
Example 27
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0210]

[0211] To a stirred 25 °C solution of Boc-Dap-OH dicyclohexylamine salt (6.47 g, 13.8 mmol)
and phenethylamine (3.914 g, 15.19 mmol) in CH
2Cl
2 (20 mL) was added DIEA (8.76 mL, 55.2 mmol), followed by DEPC (3.12 mL, 20.7 mmol).
After 8 h, analysis by LCMS showed the reaction was complete. The volatile organic
were evaporated
in vacuo to give crude product that was used without further purification. A total of 4.04
g of Boc-Dap-phenethylamine (10.3 mmol) was obtained. LCMS RT = 3.00 min (Method A);
ESI-MS m/z 391.37 [M+H]
+.
[0212] To a stirred 25 °C solution of Boc-Dap-phenethylamine (4.04 g, 10.3 mmol) in CH
2Cl
2 (15.0 mL) was added TFA (15.0 mL). After 14 h, analysis by LCMS showed the reaction
was complete. The volatile organic were evaporated
in vacuo an the crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ
Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the
eluent. A total of 2.51 g of H-Dap-phenethylamine (6.21 mmol) was obtained as the
TFA salt. LCMS RT = 1.72 min (Method A); ESI-MS m/z 291.29 [M+H]
+.
[0213] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-OH TFA salt (0.300 g, 0.526 mmol) and H-Dap-phenethylamine TFA salt (0.191 g,
0.471 mmol) in DMF (5 mL) was added DIEA (0.343 mL, 1.97 mmol), followed by the addition
of HATU (0.501 g, 1.31 mmol). After 10 h, analysis by LCMS showed the reaction was
complete. The crude reaction was diluted with saturated sodium bicarbonate (10 mL)
and extracted with EtOAc (20 mL x 2). The combined organic fractions were washed with
brine, dried using magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 196 mg of the title compound was obtained as the TFA salt (0.233
mmol, 49%). LCMS RT = 2.45 min (Method A); ESI-MS m/z 729.55 [M+H]
+; HRMS m/z 729.5030 [C
38H
64N
8O
6+H]
+.
Example 28
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0214]

[0215] To a stirred room temperature solution of Boc-Dap-OH dicyclohexylamine salt (10.0
g, 0.021 mol) and (1R,2S)-(-)-Norephedrine (3.87 g, 0.026 mol) in CH
2Cl
2 (20 mL) was added DIEA (11.4 mL, 0.064 mol) and DEPC (6.44 mL, 0.043 mol). After
14 h, analysis by LCMS showed the reaction was complete. To the crude reaction mixture
was added 0.1 M HCl (20.0 mL). The organic layer was separated, dried over a pad of
magnesium sulfate, filtered, and concentrated
in vacuo to yield crude product. A total of 7.92 g of Boc-Dap-(1R,2S)-(-)-Norephedrine (18.8
mmol, 88%) was obtained. LCMS RT = 2.25 min (Method A); ESI-MS m/z 421.31 [M+H]
+.
[0216] To a stirred room temperature solution of Boc-Dap-(1R,2S)-(-)-Norephedrine (7.92
g, 18.8 mmol) in CH
2Cl
2 (10 mL) was added TFA (10 mL). After 10 h, analysis by LCMS showed the reaction was
complete. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 5.00 g of H-Dap-(1R,2S)-(-)-Norephedrine (11.5 mmol, 61%) was
prepared as the TFA salt. LCMS RT = 1.10 min (Method A); ESI-MS m/z 321.33 [M+H]
+.
[0217] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-OH TFA salt (0.300 g, 0.526 mmol) and H-Dap-(1R,2S)-(-)-Norephedrine TFA salt
(0.211 g, 0.486 mmol) in DMF (5 mL) was added DIEA (0.351 mL, 1.97 mmol), followed
by the addition of HATU (0.501 g, 1.31 mmol). After 10 h, analysis by LCMS showed
the reaction was complete. The crude reaction was diluted with saturated sodium bicarbonate
(10 mL) and extracted with EtOAc (20 mL x 2). The combined organic fractions were
washed with brine, dried using magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 128 mg of the title compound was obtained as the TFA salt (0.147 mmol,
30%). LCMS RT = 1.95 min (Method A); ESI-MS m/z 759.65 [M+H]
+; HRMS m/z 759.5121 [C
39H
66N
8O
7+H]
+.
Example 29
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0218]

[0219] To a stirred room temperature solution of Boc-Dap-OH dicyclohexylamine salt (5.00
g, 10.7 mmol) and 2-(4-chlorophenyl)ethylamine (1.85 g, 11.7 mmol) in CH
2Cl
2 (20 mL) was added DIEA (6.78 mL, 42.7 mmol) and DEPC (2.41 mL, 16.0 mmol). After
10 h, analysis by LCMS showed the reaction was complete. The volatile organic were
evaporated in vacuo to give crude product that was used without further purification.
A total of 4.25 g of Boc-Dap-2-(4-chlorophenyl)ethylamine (10.0 mmol, 94%) was obtained.
LCMS RT = 3.10 min (Method A); ESI-MS m/z 425.32 [M+H]
+.
[0220] To a stirred room temperature solution of Boc-Dap-2-(4-chlorophenyl)ethylamine (4.25
g, 10.0 mmol) in CH
2Cl
2 (15 mL) was added TFA (15 mL). After 10 h, analysis by LCMS showed the reaction was
complete. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 2.27 g of H-Dap-2-(4-chlorophenyl)ethylamine (5.18 mmol, 52%)
was prepared as the TFA salt. LCMS RT = 2.05 min (Method A); ESI-MS m/z 325.24 [M+H]
+.
[0221] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-OH TFA salt (0.526 g, 0.923 mmol) and H-Dap-2-(4-chlorophenyl)ethylamine TFA
salt (0.347 g, 0.792 mmol) in DMF (10 mL) was added DIEA (0.602 mL, 3.46 mmol), followed
by the addition of HATU (0.878 g, 2.30 mmol). After 10 h, analysis by LCMS showed
the reaction was complete. The crude reaction was diluted with saturated sodium bicarbonate
(10 mL) and extracted with EtOAc (20 mL x 2). The combined organic fractions were
washed with brine, dried using magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent.
A total of 596 mg of the title compound was obtained as the TFA salt (0.680 mmol,
85%). LCMS RT = 2.38 min (Method A); ESI-MS m/z 763.71 [M+H]
+; HRMS m/z 763.4633 [C
38H
63N
8O
6Cl+H]
+.
Example 30
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0222]

[0223] To a stirred room temperature solution of Boc-Dap-OH dicyclohexylamine salt (5.00
g, 10.7 mmol) and 2-(2-chlorophenyl)ethylamine (1.85 g, 11.7 mmol) in CH
2Cl
2 (10 mL) was added DIEA (4.76 mL, 26.7 mmol) and DEPC (2.41 mL, 16.0 mmol). After
10 h, analysis by LCMS showed the reaction was complete. The volatile organic were
evaporated in vacuo to give crude product that was used without further purification.
A total of 3.98 g of Boc-Dap-2-(2-chlorophenyl)ethylamine (9.37 mmol, 88%) was obtained.
LCMS RT = 3.04 min (Method A); ESI-MS m/z 425.23 [M+H]
+.
[0224] To a stirred room temperature solution of Boc-Dap-2-(2-chlorophenyl)ethylamine (3.98
g, 9.37 mmol) in CH
2Cl
2 (5 mL) was added TFA (5 mL). After 10 h, analysis by LCMS showed the reaction was
complete. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi
10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous TFA as
the eluent. A total of 2.87 g of H-Dap-2-(2-chlorophenyl)ethylamine (6.55 mmol, 70%)
was prepared as the TFA salt. LCMS RT = 1.83 min (Method A); ESI-MS m/z 325.22 [M+H]
+.
[0225] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-OH TFA salt (0.450 g, 0.789 mmol) and H-Dap-2-(2-chlorophenyl)ethylamine TFA
salt (0.320 g, 0.731 mmol) in DMF (10 mL) was added DIEA (0.515 mL, 2.96 mmol), followed
by the addition of HATU (0.751 g, 1.97 mmol). After 10 h, analysis by LCMS showed
the reaction was complete. The crude reaction mixture was purified by preparatory
RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to
90% MeCN in 0.05% aqueous TFA as the eluent. A total of 253 mg of the title compound
was obtained as the TFA salt (0.289 mmol, 32% based on RSM). LCMS RT = 1.26 min (Method
B); ESI-MS m/z 763.60 [M+H]
+; HRMS m/z 763.4632 [C
38H
63N
8O
6Cl+H]
+.
Example 31
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0226]

[0227] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-PE TFA salt (25 mg, 0.030 mmol) in THF (0.5 mL) was added trimethylphosphine
in THF (1 M, 0.045 mL, 0.045 mmol). After 1 h, analysis by LCMS showed the reaction
was complete. The crude reaction mixture was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 5% to 95% MeCN in
0.1% aqueous formic acid as the eluent. A total of 9.0 mg of the title compound was
obtained as the formic acid salt (0.012 mmol, 41%). LCMS RT = 1.02 min (Method B);
ESI-MS m/z 703.71 [M+H]
+; HRMS m/z 703.5117 [C
38H
66N
6O6+H]
+.
Example 32
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0228]

[0229] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Norephedrine TFA salt (27 mg, 0.031 mmol) in THF (0.3 mL) was added trimethylphosphine
in THF (1 M, 0.046 mL, 0.046 mmol). After 2 h, analysis by LCMS showed the reaction
was complete. The crude reaction mixture was purified by preparatory RP-HPLC with
a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.05% aqueous trifluoroacetic acid as the eluent. A total of 6.8 mg of the title compound
was obtained as the TFA salt (0.008 mmol, 26%). LCMS RT = 1.95 min (Method B); ESI-MS
m/z 733.72 [M+H]
+; HRMS m/z 733.5227 [C
39H
68N
6O
7+H]
+.
Example 33
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0230]

[0231] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-2-(4-chlorophenyl)ethylamine TFA salt (117 mg, 0.133 mmol) in THF (0.3 mL)
was added trimethylphosphine in THF (1 M, 0.2 mL, 0.2 mmol). After 2 h, analysis by
LCMS showed the reaction was complete. The crude reaction mixture was purified by
preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm)
using 5% to 95% MeCN in 0.1% aqueous formic acid as the eluent. A total of 9.0 mg
of the title compound was obtained as the formic acid salt (0.011 mmol, 9%). LCMS
RT = 0.97 min (Method B); ESI-MS m/z 737.51 [M+H]
+; HRMS m/z 737.4731 [C
38H
65N
6O
6Cl+H]
+.
Example 34
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0232]

[0233] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-2-(2-chlorophenyl)ethylamine formic acid salt (46 mg, 0.057 mmol) in THF
(1.0 mL) was added trimethylphosphine in THF (1 M, 0.085 mL, 0.085 mmol). After 1
h, the crude reaction mixture was purified by preparatory RP-HPLC with a Phenomenex
Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous
formic acid as the eluent. A total of 13.6 mg of the title compound was obtained as
the formic acid salt (0.017 mmol, 30%). LCMS RT = 1.03 min (Method B); ESI-MS m/z
737.57 [M+H]
+; HRMS m/z 737.4731 [C
38H
65N
6O
6Cl+H]
+.
Example 35
(S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(phenethylamino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0234]

[0235] To a stirred room temperature solution of Dov-Dab(Fmoc)-Dil-OH TFA salt (0.450 g,
0.587 mmol) and H-Dap-phenethylamine TFA salt (0.200 g, 0.495 mmol) in DMF (15 mL)
was added DIEA (0.360 mL, 2.07 mmol), followed by the addition of HATU (0.526 g, 1.38
mmol). After 10 h, analysis by LCMS showed the reaction was complete. The crude reaction
mixture was diluted with saturated sodium bicarbonate (10 mL) and extracted with EtOAc
(20 mL x 2). The combined organic fractions were washed with brine, dried using magnesium
sulfate, filtered, and concentrated in vacuo. The crude oil was purified by preparatory
RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to
90% MeCN in 0.1% aqueous formic acid as the eluent. A total of 276 mg of Dov-Dab(Fmoc)-Dil-Dap-phenethylamine
(0.266 mmol, 54%) was obtained as the formic acid salt. LCMS RT = 1.37 min (Method
B); ESI-MS m/z 925.48 [M+H]
+.
[0236] To a stirred room temperature solution of Dov-Dab(Fmoc)-Dil-Dap-phenethylamine (0.276
g, 0.266 mmol) in acetonitrile (10 mL) was added piperidine (5 mL). After 10 h, analysis
by LCMS showed the reaction was complete. To the crude reaction mixture was added
hexanes. The acetonitrile layer was concentrated in vacuo. The crude oil was purified
by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30
mm) using 10% to 90% MeCN in 0.1% aqueous formic acid as the eluent. A total of 98.0
mg of the title compound was obtained as a formic acid salt (0.120 mmol, 45%). LCMS
RT = 1.02 min (Method B); ESI-MS m/z 703.78 [M+H]
+; HRMS m/z 703.5117 [C
38H
66N
6O
6+H]
+.
Example 36
(S)-4-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0237]

[0238] To a stirred room temperature solution of Dov-Dab(Fmoc)-Dil-OH TFA salt (0.459 g,
0.599 mmol) and H-Dap-(1R,2S)-(-)-Norephedrine TFA salt (0.225 g, 0.518 mmol) in DMF
(15 mL) was added DIEA (0.376 mL, 2.11 mmol), followed by the addition of HATU (0.536
g, 1.41 mmol). After 10 h, analysis by LCMS showed the reaction was complete. The
crude reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and extracted
with EtOAc (20 mL x 2). The combined organic fractions were washed with brine, dried
using magnesium sulfate, filtered, and concentrated in vacuo. The crude oil was purified
by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30
mm) using 10% to 90% MeCN in 0.1% aqueous formic acid as the eluent. A total of 449
mg of Dov-Dab(Fmoc)-Dil-Dap-(1R,2S)-(-)-Norephedrine (0.420 mmol, 81%) was obtained
as the formic acid salt. LCMS RT = 1.35 min (Method B); ESI-MS m/z 955.74 [M+H]
+.
[0239] To a stirred room temperature solution of Dov-Dab(Fmoc)-Dil-Dap-(1R,2S)-(-)-Norephedrine
formic acid salt (0.449 g, 0.420 mmol) in acetonitrile (10 mL) was added piperidine
(5 mL). After 10 h, analysis by LCMS showed the reaction was complete. To the crude
reaction mixture was added hexanes. The acetonitrile layer was concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous formic acid as the
eluent. A total of 53.0 mg of the title compound was obtained as a formic acid salt
(0.068 mmol, 14%). LCMS RT = 0.79 min (Method B); ESI-MS m/z 733.71 [M+H]
+; HRMS m/z 733.5227 [C
39H
68N
6O
7+H]
+.
Example 37
(S)-4-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((4-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0240]

[0241] To a stirred room temperature solution of Dov-Dab(Fmoc)-Dil-OH TFA salt (0.255 g,
0.333 mmol) and H-Dap-2-(4-chlorophenyl)ethylamine TFA salt (0.127 g, 0.290 mmol)
in DMF (10 mL) was added DIEA (0.204 mL, 1.17 mmol), followed by the addition of HATU
(0.298 g, 0.781 mmol). After 10 h, analysis by LCMS showed the reaction was complete.
The crude reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and
extracted with EtOAc (20 mL x 2). The combined organic fractions were washed with
brine, dried using magnesium sulfate, filtered, and concentrated in vacuo. The crude
oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å
column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous formic acid as the eluent.
A total of 190 mg of Dov-Dab(Fmoc)-Dil-Dap-2-(4-chlorophenyl)ethylamine (0.177 mmol,
61%) was obtained as the formic acid salt. LCMS RT = 1.49 min (Method B); ESI-MS m/z
959.62 [M+H]
+.
[0242] To a stirred room temperature solution of Dov-Dab(Fmoc)-Dil-Dap-2-(4-chlorophenyl)ethylamine
formic acid salt (0.190 g, 0.177 mmol) in acetonitrile (5 mL) was added piperidine
(5 mL). After 10 h, analysis by LCMS showed the reaction was complete. To the crude
reaction mixture was added hexanes. The acetonitrile layer was concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP
80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous formic acid as the
eluent. A total of 118 mg of the title compound was obtained as a formic acid salt
(0.151 mmol, 85%). LCMS RT = 1.06 min (Method B); ESI-MS m/z 737.55 [M+H]
+; HRMS m/z 737.4729 [C
38H
65N
6O
6Cl+H]
+.
Example 38
(S)-4-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-((2-chlorophenethyl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0243]

[0244] To a stirred room temperature solution of Dov-Dab(Fmoc)-Dil-OH TFA salt (0.306 g,
0.399 mmol) and H-Dap-2-(2-chlorophenyl)ethylamine TFA salt (0.170 g, 0.388 mmol)
in DMF (5 mL) was added DIEA (0.300 g, 400 µL, 2.29 mmol), followed by the addition
of HATU (360 mg, 0.944 mmol). After 10 h, analysis by LCMS showed the reaction was
complete. The crude reaction was diluted with saturated sodium bicarbonate (10 mL)
and extracted with EtOAc (10 mL x 3). The combined organic fractions were washed with
brine, dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini 10µ Max-RP
110 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 115 mg of Dov-Dab(Fmoc)-Dil-Dap-2-(2-chlorophenyl)ethylamine
(0.120 mmol, 26%) was obtained as a white solid. LCMS RT = 1.40 min (Method B); ESI-MS
m/z 959.75 [M+H]
+.
[0245] To a stirred room temperature solution of Dov-Dab(Fmoc)-Dil-Dap-2-(2-chlorophenyl)ethylamine
(0.115 g, 0.120 mmol) in acetonitrile (10 mL) was added piperidine (2 mL). After 3
h, analysis by LCMS showed the reaction was complete. To the crude reaction mixture
was added hexanes. The acetonitrile layer was concentrated in vacuo. The crude oil
was purified by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column
(150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 30.0 mg of the title compound was obtained as a white
solid (0.041 mmol, 34%). LCMS RT = 1.15 min (Method B); ESI-MS m/z 737.68 [M+H]
+; HRMS m/z 737.4729 [C
38H
65N
6O
6Cl+H]
+.
Example 39
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylpent-4-ynamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate
[0246]

[0247] To a stirred 25 °C solution of Boc-propargylGly-OH (1.00 g, 4.69 mmol) and H-Dil-OtBu
HCl salt (1.15 g, 3.90 mmol) in EtOAc (10 mL) was added DIEA (1.49 mL, 9.38 mmol).
The solution was cooled to (0 °C) and stirred for 20 min and an additional portion
of DIEA (1.49 mL, 9.38 mmol) was added and the reaction mixture stirred at 0 °C 20
min. Then CMPI (1.80 g, 7.04 mmol) was added to the reaction mixture which was allowed
to warm to room temperature and stirred for 12 h. The crude reaction mixture was washed
with 0.1 M HCl (20 mL x 2), followed by brine (20 mL x 2). The organic fraction was
dried over anhydrous magnesium sulfate, filtered, and concentrated in vacuo to give
the crude product. A total of 2.05 g of Boc-propargylGly-Dil-OtBu was obtained (4.50
mmol, 96%). LCMS RT = 3.46 min (Method A); ESI-MS m/z 455.42 [M+H]
+.
[0248] To a stirred 25 °C solution of Boc-propargylGly-Dil-OtBu (2.05 g, 4.50 mmol) in CH
2Cl
2 (6 mL) was added TFA (6 mL). After 14 h, analysis by LCMS showed the reaction was
complete. The volatile organics were concentrated in vacuo to give crude product that
was used without further purification. A total of 1.30 g of H-propargylGly-Dil-OH
was obtained as the TFA salt (3.16 mmol, 70%).
[0249] To a stirred 25 °C solution of Dov (1.27 g, 8.71 mmol) in DMF (10 mL) was added DIEA
(2.33 mL, 13.1 mmol), followed by HATU (3.32 g, 8.71 mmol). After 10 min, a solution
of H-propargylGly-Dil-OH TFA salt (1.30 g, 3.16 mmol) in DMF was added to the reaction.
After 8 h, analysis by LCMS showed the reaction was complete. The crude oil was purified
by preparatory RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30
mm) using 10% to 90% MeCN in 0.05% aqueous TFA as the eluent. A total of 455 mg of
Dov-propargyGly-Dil-OH was obtained as the TFA salt (0.844 mmol, 27% yield). LCMS
RT = 1.65 min (Method A); ESI-MS m/z 425.95 [M+H]
+.
[0250] To a stirred room temperature solution of Dov-propargylGly-Dil-OH TFA salt (0.198
g, 0.367 mmol) and H-Dap-Phe-OMe TFA salt (0.156 g, 0.338) in DMF (10 mL) was added
DIEA (0.222 mL, 1.40 mmol), followed by the addition of HATU (0.355 g, 0.931 mmol).
After 10 h, analysis by LCMS showed the reaction was complete. The crude reaction
was diluted with saturated sodium bicarbonate (10 mL) and extracted with EtOAc (20
mL x 2). The combined organic fractions were washed with brine, dried using magnesium
sulfate, filtered, and concentrated in vacuo. The crude oil was purified by preparatory
RP-HPLC with a Phenomenex Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to
90% MeCN in 0.05% aqueous TFA as the eluent. A total of 10.0 mg of the title compound
was obtained as the TFA salt (0.012 mmol, 3%). LCMS RT = 2.50 min (Method A); ESI-MS
m/z 756.44 [M+H]
+; HRMS m/z 756.4902 [C
41H
65N
5O
8+H]
+.
Example 40
(2S,3S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0251]

[0252] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-OH formic acid salt (42.1 mg, 0.051 mmol), ammonium chloride (7.9 mg,
0.148 mmol), TBTU (52.5 mg, 0.163 mmol) in DMF (0.2 mL) was added Hunig's base (0.045
mL, 0.258 mmol). After 16 h, analysis by LCMS showed the reaction was complete. The
crude reaction mixture was purified by preparatory RP-HPLC with a Phenomenex Gemini-NX
10µ C-18 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous ammonium
hydroxide as the eluent. A total of 13.4 mg of the title compound was obtained (0.017
mmol, 33%). LCMS RT = 1.05 min (Method B); ESI-MS m/z 772.61 [M+H]
+; HRMS m/z 772.5078 [C
39H
65N
9O
7+H]
+.
Example 41
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-((2-(pyridin-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0253]

[0254] To a stirred 23 °C solution of Dov-Abu(3-N
3)-Dil-OH TFA salt (0.300 g, 0.526 mmol) and H-Dap-2-(2-pyridyl)ethylamine TFA salt
(0.287 g, 0.709 mmol) in DMF (10 mL) was added DIEA (343 µL, 1.97 mmol) followed by
the addition of HATU (0.501 g, 1.31 mmol). After 10 h, analysis by LCMS showed the
reaction was complete. The crude reaction was diluted with saturated sodium bicarbonate
(10 mL) and extracted with EtOAc (20 mL x 2). The combined organic fractions were
washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini-NX
10µ C-18 110 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 139 mg of the title compound was obtained (0.190 mmol,
29%). LCMS RT = 0.916 min (Method B); ESI-MS m/z 730.64 [M+H]
+; HRMS m/z 730.4985 [C
37H
63N
9O
6+H]
+.
Example 42
(2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylproyan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0255]

[0256] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-OH formic acid salt (24.0 mg, 0.029 mmol),
tert-butyl amine hydrochloride (7.9 mg, 0.072 mmol), HATU (24.5 mg, 0.064 mmol) in DMF
(0.2 mL) was added Hunig's base (0.022 mL, 0.124 mmol). After 18 h, analysis by LCMS
showed the reaction was complete. The crude reaction mixture was purified by preparatory
RP-HPLC with a Phenomenex Gemini-NX 10µ C-18 110 Å column (150 x 30 mm) using 5% to
95% MeCN in 0.1% aqueous ammonium hydroxide as the eluent. A total of 15.4 mg of the
title compound was obtained (0.017 mmol, 59%). LCMS RT = 1.27 min (Method B); ESI-MS
m/z 828.8 [M+H]
+; HRMS m/z 828.5671 [C
39H
66N
6O
8+H]
+.
Example 43
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-valinate
[0257]

[0258] To a stirred 23 °C suspension of Boc-Dap-OH dicyclohexylamine (4.00 g, 8.54 mmol)
and H-Val-OMe HCl salt (1.80 g, 10.7 mmol) in CH
2Cl
2 (20 mL) was added DIEA (4.44 g, 6.00 mL, 34.4 mmol), followed by the addition of
HATU (2.15 g, 2.00 mL, 0.013 mol). After 10 h, analysis by LCMS showed the reaction
was complete. The volatile organics were evaporated in vacuo to give crude product,
that was used without further purification. A total of 6.80 g of Boc-Dap-Val-OMe was
obtained as a colorless oil (17.0 mmol, 80%). LCMS RT = 1.33 min (Method B); ESI-MS
m/z 401.6 [M+H]
+.
[0259] A 23 °C suspension of Boc-Dap-Val-OMe (6.80 g, 17.0 mmol) in 4.0 M HCl in dioxane
(20 mL) was stirred. After 4 h, analysis by LCMS showed the reaction was complete.
The volatile organics were evaporated in vacuo to give crude product that was used
without further purification. A total of 4.57 g of H-Dap-Val-OMe was obtained as the
HCl salt (13.6 mmol, 80%). LCMS RT = 0.726 min (Method B); ESI-MS m/z 301.45 [M+H]
+.
[0260] To a stirred 23 °C suspension of Dov-Abu(3-N
3)-Dil-OH TFA salt (0.144 g, 0.253 mmol) and H-Dap-Val-OMe HCl salt (0.332 g, 0.985
mmol) in DMF (10 mL) was added DIEA (0.222 g, 0.300 mL, 1.72 mmol), followed by the
addition of HATU (0.240 g, 0.631 mmol). After 10 h, analysis by LCMS showed the reaction
was complete. The crude reaction was diluted with saturated sodium bicarbonate (10
mL) and extracted with EtOAc (20 mL x 3). The combined organic fractions were washed
with brine, dried over a pad of magnesium sulfate, filtered, and concentrated in vacuo.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini-NX 10µ
C-18 110 Å column (150 x 30 mm) using 5% to 90% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 129 mg of the title compound was obtained as a pale yellow
solid (0.175 mmol, 55%). LCMS RT = 1.15 min (Method B); ESI-MS m/z 739.75 [M+H]
+; HRMS m/z 739.5074 [C
36H
66N
8O
8+H]
+.
Example 44
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-6-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylhexanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylproyanoyl)-L-phenylalaninate
[0261]

[0262] To a stirred 23 °C suspension of Boc-Lys(Fmoc)-OH (5.60 g, 12.0 mmol) and H-Dil-OtBu
HCl (3.06 g, 10.9 mmol) in EtOAc (20 mL) was added DIEA (4.44 g, 6.00 mL, 34.4 mmol).
The solution was cooled to 0 °C and stirred for 0.5 h. After 0.5 h, additional DIEA
(4.44 g, 6.00 mL, 34.4 mmol) was added to the reaction mixture and the 0 °C reaction
was stirred for 0.5 h. Then CMPI (4.20 g, 16.4 mmol) was added to the reaction mixture
which was allowed to slowly warm to room temperature and stirred for 10 h. The crude
reaction was washed with 1 M HCl (30 mL x 2), followed by brine (25 mL x 2). The organic
fraction was dried over a pad of magnesium sulfate, filtered, and concentrated in
vacuo. A total of 7.38 g of Boc-Lys(Fmoc)-Dil-OtBu was obtained as a pale yellow solid
(10.4 mmol, 86%). LCMS RT = 1.85 min (Method B); ESI-MS m/z 710.1 [M+H]
+.
[0263] A 23 °C suspension of Boc-Lys(Fmoc)-Dil-OtBu (7.38 g, 10.4 mmol) in 4.0 M HCl in
dioxane (10.0 mL) was stirred. After 10 h, analysis by LCMS showed the reaction was
complete. The volatile organics were evaporated in vacuo to give crude product that
was used without further purification. A total of 7.05 g of H-Lys(Fmoc)-Dil-OH was
obtained as a pale yellow HCl salt (0.012 mol, 89%). LCMS RT = 1.20 min (Method B);
ESI-MS m/z 554.54 [M+H]
+.
[0264] To a stirred 23 °C suspension of Dov-OH (2.50 g, 17.2 mmol) in DMF (20 mL) was added
DIEA (4.44 g, 6.00 mL, 0.034 mol), followed by the addition of HATU (4.82 g, 12.6
mmol). After 5 min, H-Lys(Fmoc)-Dil-OH HCl salt (7.05 g, 0.012 mol) was added to the
reaction mixture. After 4 h, analysis by LCMS showed the reaction was complete. The
crude reaction mixture was diluted with saturated sodium bicarbonate (10 mL) and extracted
with EtOAc (20 mL x 2). The combined organic fractions were washed with brine, dried
over a pad of magnesium sulfate, filtered, and concentrated in vacuo. The crude oil
was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column
(150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 4.45 g of Dov-Lys(Fmoc)-Dil-OH was obtained as a pale
yellow solid (6.54 mmol, 78%). LCMS RT = 1.21 min (Method B); ESI-MS m/z 681.68 [M+H]
+.
[0265] To a stirred 23 °C suspension of Dov-Lys(Fmoc)-Dil-OH (2.17 g, 3.19 mmol) and H-Dap-OMe
TFA salt (1.78 g, 3.85 mmol) in DMF (10 mL) was added DIEA (1.65 g, 2.20 mL, 12.7
mmol), followed by the addition of HATU (1.94 g, 5.10 mmol). After 10 h, analysis
by LCMS showed the reaction was complete. The crude reaction was diluted with saturated
sodium bicarbonate (10 mL) and extracted with EtOAc (20 mL x 3). The combined organic
fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Gemini 10µ Max-RP 110 Å column (150 x 30 mm) using 5% to 90% MeCN in
0.1% aqueous NH
4OH as the eluent. A total of 2.25 g of Dov-Lys(Fmoc)-Dil-Dap-Phe-OMe was obtained
as a pale yellow solid (2.23 mmol, 70%). LCMS RT = 1.29 min (Method B); ESI-MS m/z
1011.77 [M+H]
+.
[0266] To a stirred 23 °C suspension of Dov-Lys(Fmoc)-Dil-Dap-Phe-OMe (2.25 g, 2.23 mmol)
in acetonitrile (20 mL) was added piperidine (5 mL). After 2 h, analysis by LCMS showed
the reaction was complete. To the crude reaction solution was added hexanes. The acetonitrile
layer was concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC
with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN
in 0.1% aqueous NH
4OH as the eluent. A total of 898 mg of the title compound was obtained as a white
solid (1.14 mmol, 51%). LCMS RT = 0.840 min (Method B); ESI-MS m/z 789.5 [M+H]
+; HRMS m/z 789.5482 [C
42H
72N
6O
8+H]
+.
Example 45
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,4S)-4-azido-1-(dimethyl-L-valyl)-N-methylpyrrolidine-2-carboxamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylproyanoyl)-L-phenylalaninate
[0267]

[0268] To a stirred 23 °C suspension of cis-Fmoc-Pro(4-N
3)-OH (2.00 g, 5.27 mmol) and H-Dil-OtBu HCl (1.49 g, 5.27 mmol) in EtOAc (20 mL) was
added DIEA (2.22 g, 3.0 mL, 17.2 mmol). The solution was cooled to 0 °C and stirred
for 0.5 h. To the cooled reaction mixture was added additional DIEA (2.22 g, 3.0 mL,
17.2 mmol) and the 0 °C reaction mixture was stirred for 0.5 h. Then CMPI (2.03 g,
7.93 mmol) was added to the reaction mixture which was allowed to slowly warm to room
temperature and stirred for 10 h. The crude reaction was washed with 1 M HCl (30 mL
x 2), followed by brine (25 mL x 2). The organic fraction was dried over a pad of
magnesium sulfate, filtered, and concentrated in vacuo. The crude product was used
without further purification. A total of 3.13 g of cis-Fmoc-Pro(4-N
3)-Dil-OtBu was obtained as a yellow oil (5.05 mmol, 76%). LCMS RT = 1.73 min (Method
B); ESI-MS m/z 621.46 [M+H]
+.
[0269] To a stirred 23 °C solution of cis-Fmoc-Pro(4-N
3)-Dil-OtBu (3.13 g, 4.04 mmol) in acetonitrile (20 mL) was added piperidine (10 mL).
After 10 h, analysis by LCMS showed the reaction was complete. To the crude reaction
mixture was added hexanes. The acetonitrile layer was concentrated
in vacuo and the crude product was used without further purification. A total of 1.57 g of
H-Pro(4-N
3)-Dil-OtBu was obtained as a clear oil (3.95 mmol, 88%). LCMS RT = 1.19 min (Method
B); ESI-MS m/z 398.50 [M+H]
+.
[0270] To a stirred 23 °C suspension of Dov-OH (1.03 g, 7.12 mmol) and H-Pro(4-N
3)-Dil-OtBu (1.57 g, 3.56 mmol) in DMF (10 mL) was added DIEA (1.84 g, 2.50 mL, 0.014
mol), followed by the addition of HATU (2.03 g, 5.33 mmol). After 3 h, analysis by
LCMS showed the reaction was complete. The crude reaction was diluted with saturated
sodium bicarbonate (10 mL) and extracted with EtOAc (20 mL x 2). The combined organic
fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 817 mg of Dov-Pro(4-N
3)-Dil-OtBu was obtained as a white solid (1.56 mmol, 44%). LCMS RT = 1.21 min (Method
B); ESI-MS m/z 525.28 [M+H]
+.
[0271] A 23 °C suspension of Dov-Pro(4-N
3)-Dil-OtBu (0.817 g, 1.56 mmol) in 3.0 M HCl dioxane was stirred. After 10 h, analysis
by LCMS showed the reaction was complete. The volatile organics were evaporated
in vacuo to give crude product that was used without further purification. A total of 704
mg of Dov-Pro(4-N
3)-Dil-OH was obtained as the HCl salt (1.39 mmol, 89%). LCMS RT = 0.676 min (Method
B); ESI-MS m/z 469.44 [M+H]
+.
[0272] To a stirred 23 °C suspension of Dov-Pro(4-N
3)-Dil-OH HCl salt (0.120 g, 0.256 mmol) and H-Dap-Phe-OMe TFA salt (0.143 g, 0.310
mmol) in DMF (10 mL) was added DIEA (0.132 g, 0.200 mL, 1.02 mmol), followed by the
addition of HATU (0.156 g, 0.410 mmol). After 10 h, analysis by LCMS showed the reaction
was complete. The crude reaction was diluted with saturated sodium bicarbonate (10
mL) and extracted with EtOAc (20 mL x 3). The combined organic fractions were washed
with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 90% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 37.0 mg of the title compound was obtained as a yellow
solid (0.046 mmol, 18%) was obtained as a yellow solid. LCMS RT = 1.13 min (Method
B); ESI-MS m/z 799.43 [M+H]
+; HRMS m/z 799.5064 [C
41H
66N
8O
8+H]
+.
Example 46
(S)-3-((S)-2-(dimethylamino)-3-methylbutanamido)-4-(((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-3-(((S)-1-methoxy-1-oxo-3-phenylproyan-2-yl)amino)-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)(methyl)amino)-4-oxobutanoic
acid
[0273]

[0274] To a stirred 23 °C suspension of Boc-Asp(OBzl)-OH (5.00 g, 15.5 mmol) and H-Dil-OtBu
TFA salt (4.36 g, 15.5 mmol) in EtOAc (20 mL) was added DIEA (6.00 g, 8.10 mL, 46.41
mmol). The reaction mixture was cooled to 0 °C and stirred for 0.5 h. After 0.5 h,
additional DIEA (6.00 g, 8.01 mL, 46.4 mmol) was added to the reaction mixture and
stirred for 0.5 h. Then CMPI (5.93 g, 23.2 mmol) was added to the reaction mixture
which was allowed to slowly warm to room temperature and stirred for 10h. The crude
reaction was washed with 1 M HCl (30 mL x 2), followed by brine (25 mL x 2). The organic
fraction was dried over anhydrous magnesium sulfate, filtered, and concentrated in
vacuo. The crude product was used without further purification. A total of 7.85 g
of Boc-Asp(OBzl)-Dil-OtBu was obtained as a brown oil (13.9 mmol, 90%). LCMS RT =
1.72 min (Method B); ESI-MS m/z 565.3 [M+H]
+.
[0275] A 23 °C solution of Boc-Asp(OBzl)-Dil-OtBu (7.85 g, 13.9 mmol) in 4.0 M HCl in dioxane
(20 mL) was stirred. After 10 h, analysis by LCMS showed the reaction was complete.
The volatile organics were evaporated
in vacuo to give crude product that was used without further purification. A total of 7.85
g of enriched H-Asp(OBzl)-Dil-OH was obtained as the HCl salt. LCMS RT = 0.951 min
(Method B); ESI-MS m/z 409.40 [M+H]
+.
[0276] To a stirred 23 °C suspension of Dov-OH (3.00 g, 20.7 mmol) in DMF (20 mL) was added
DIEA (6.96 g, 9.40 mL, 0.054 mol) and HATU (7.60 g, 19.9 mmol), followed by the addition
of enriched H-Asp(OBzl)-Dil-OH HCl salt (7.85 g). After 4 h, analysis by LCMS showed
the reaction was complete. The crude reaction was diluted with saturated sodium bicarbonate
(10 mL) and extracted with EtOAc (20 mL x 2). The combined organic fractions were
washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini
NX-C18 10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 2.00 g of Dov-Asp(OBzl)-Dil-OH was obtained as a white
solid (3.74 mmol, 28%). LCMS RT = 1.10 min (Method B); ESI-MS m/z 536.5 [M+H]
+.
[0277] To a stirred 23 °C suspension of Dov-Asp(OBzl)-Dil-OH (1.00 g, 1.87 mmol) and H-Dap-Phe-OMe
TFA salt (1.04 g, 2.25 mmol) in DMF (10 mL) was added DIEA (0.970 g, 1.30 mL, 7.47
mmol), followed by the addition of HATU (1.14 g, 2.99 mmol). After 10 h, analysis
by LCMS showed the reaction was complete. The crude reaction was diluted with saturated
sodium bicarbonate (10 mL) and extracted with EtOAc (20 mL x 3). The combined organic
fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 5% to 90% MeCN in
0.1% aqueous NH
4OH as the eluent. A total of 1.25 g of Dov-Asp(OBzl)-Dil-Dap-Phe-OMe (1.44 mmol, 77%)
was obtained as an orange solid. LCMS RT = 1.21 min (Method B); ESI-MS m/z 866.6 [M+H]
+.
[0278] To a stirred 23 °C suspension of Dov-Asp(OBzl)-Dil-Dap-Phe-OMe (0.525 g, 0.606 mmol)
in MeOH (10 mL) was added 10% Pd/C (50 mg), followed by the addition of a hydrogen
atmosphere. After 5 h, analysis by LCMS showed the reaction was complete. The crude
reaction mixture was filtered over a pad of diatomaceous earth, followed by evaporation
of the volatile organics. The crude oil was purified by preparatory RP-HPLC with a
Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 5% to 90% MeCN in 0.1%
aqueous NH
4OH as the eluent. A total of 6.00 mg of the title compound was obtained as a white
solid (0.008 mmol, 1%). LCMS RT = 1.04 min (Method B); ESI-MS m/z 776.43 [M+H]
+; HRMS m/z 776.4794 [C
40H
65N
5O
10+H]
+.
Example 47
(2S,3R)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-3-hydroxy-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((1S,2R)-1-hydroxy-1-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0279]

[0280] To a stirred 23 °C suspension of Dov-Thr(Bzl)-Dil-OH TFA salt (561 mg, 0.883 mmol)
and H-Dap-(1R,2S)-(-)-Norephedrine TFA salt (345 mg, 0.794 mmol) in DMF (20 mL) was
added DIEA (417 mg, 562 µL, 3.23 mmol) followed by the addition of HATU (820 mg, 2.15
mmol). After 8 h, analysis by LCMS showed the reaction was complete. The crude reaction
was diluted with saturated sodium bicarbonate (10 mL) and extracted with EtOAc (20
mL x 2). The combined organic fractions were washed with brine, dried over a pad of
magnesium sulfate, filtered, and concentrated in vacuo. The crude oil was purified
by preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30
mm) using 5% to 95% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 326 mg of Dov-Thr(Bzl)-Dil-Dap-(1R,2S)-(-)-Norephedrine
was obtained as a white solid (0.396 mmol, 37%). LCMS RT = 1.20 min (Method B); ESI-MS
m/z 824.76 [M+H]
+.
[0281] To a stirred 23 °C suspension of Dov-Thr(Bzl)-Dil-Dap-(1R,2S)-(-)-Norephedrine (326
mg, 0.396 mmol) in MeOH (10 mL) was loaded onto a continuous flow hydrogenation reactor
using a RaNi (CatCart) and elevated temperature (120 °C) and pressure (80 bar). After
elution, analysis by LCMS showed the reaction was complete. The volatile organics
were evaporated in vacuo to give crude product, that was purified by preparatory RP-HPLC
with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN
in 0.1% aqueous NH
4OH as the eluent. A total of 15 mg of the title compound was obtained as a white solid
(0.020 mmol, 5%). LCMS RT = 1.17 min (Method B); ESI-MS m/z 734.5 [M+H]
+; HRMS m/z 734.5053 [C
39H
67N
5O
8+H]
+.
Reference Example 48
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N,3-dimethylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-serinate
[0282]

[0283] To a stirred 23 °C suspension of Dov-Val-Dil-OH TFA salt (583 mg, 1.07 mmol) and
H-Dap-Ser-OMe TFA salt (783 mg, 1.97 mmol) in DMF (10 mL) was added DIEA (223 mg,
0.324 mL, 1.72 mmol), followed by the addition of HATU (1.03 g, 2.71 mmol). After
10 h, analysis by LCMS showed the reaction was complete. The crude reaction was diluted
with saturated sodium bicarbonate (10 mL) and extracted with EtOAc (20 mL x 3). The
combined organic fractions were washed with brine, dried over a pad of magnesium sulfate,
filtered, and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC
with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 5% to 90% MeCN
in 0.1% aqueous NH
4OH as the eluent. A total of 704 mg of the title compound was obtained as a pale yellow
solid (1.01 mmol, 74%). LCMS RT = 0.917 min (Method B); ESI-MS m/z 700.43 [M+H]
+; HRMS m/z 700.4843 [C
35H
65N
5O
9+H]
+.
Example 49
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylproyanoyl)-L-isoleucinate
[0284]

[0285] To a stirred 23 °C suspension of Boc-Dap-OH dicyclohexylamine salt (6.62 g, 14.1
mmol) and H-Ile-OMe (3.08 g, 21.2 mmol) in CH
2Cl
2 (20 mL) was added DIEA (7.30 g, 9.90 mL, 56.5 mmol), followed by the addition of
HATU (3.44 g, 3.20 mL, 0.021 mol). After 10 h, analysis by LCMS showed the reaction
was complete. The volatile organics were evaporated in vacuo to give crude product
that was used without further purification. A total of 8.56 g of Boc-Dap-Ile-OMe was
obtained as a brown oil (20.7 mmol, 88%). LCMS RT = 1.51 min (Method B); ESI-MS m/z
415.16 [M+H]
+.
[0286] To a stirred 23 °C suspension of Boc-Dap-Ile-OMe (6.62 g, 16.0 mmol) in CH
2Cl
2 (20 mL) was added TFA (10 mL). After 10 h, analysis by LCMS showed the reaction was
complete. The volatile organics were evaporated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 3.55 g of H-Dap-Ile-OMe was obtained as a yellow solid
(8.29 mmol, 52%). LCMS RT = 0.691 min (Method B); ESI-MS m/z 315.16 [M+H]
+.
[0287] To a stirred 23 °C suspension of Dov-Abu(3-N
3)-Dil-OH TFA salt (150 mg, 0.329 mmol) and H-Dap-Ile-OMe (207 mg, 0.657 mmol) in DMF
(10 mL) was added DIEA (170 mg, 0.220 mL, 1.31 mmol), followed by the addition of
HATU (251 mg, 0.657 mmol). After 10 h, analysis by LCMS showed the reaction was complete.
The crude reaction was diluted with saturated sodium bicarbonate (10 mL) and extracted
with EtOAc (20 mL x 3). The combined organic fractions were washed with brine, dried
over a pad of magnesium sulfate, filtered, and concentrated in vacuo. The crude oil
was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column
(150 x 30 mm) using 5% to 90% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 148 mg of the title compound was obtained as a pale yellow
solid (0.197 mmol, 60%). LCMS RT = 1.43 min (Method B); ESI-MS m/z 753.48 [M+H]
+; HRMS m/z 753.5224 [C
37H
68N
8O
8+H]
+.
Example 50
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylpropan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0288]

[0289] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-NH
2 (13.4 mg, 0.017 mmol) in THF (0.1 mL) was added trimethylphosphine in THF (1 M, 0.035
mL, 0.035 mmol). After 3 h, additional trimethylphosphine was added (1 M, 0.020 mL,
0.020 mmol). After another 1 h, analysis by LCMS showed that the reaction was complete.
The solution was diluted with water and DMF and allowed to stand for 30 min. The crude
reaction mixture was purified by preparatory RP-HPLC with a Phenomenex Gemini-NX 10µ
C18 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous ammonium hydroxide
as the eluent. A total of 5.8 mg of the title compound was obtained (0.008 mmol, 45%).
LCMS RT = 0.85 min (Method B); ESI-MS m/z 746.6 [M+H]
+; HRMS m/z 746.5173 [C
39H
67N
7O
7+H]
+.
Example 51
(2S,3S)-3-amino-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylproyan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamide
[0290]

[0291] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-NH
t-Bu (15.4 mg, 0.019 mmol) in THF (0.1 mL) was added trimethylphosphine in THF (1 M,
0.037 mL, 0.037 mmol). After 3 h, additional trimethyl phosphine was added (1 M, 0.020
mL, 0.020 mmol) was added. After another 1 h, analysis by LCMS showed that the reaction
was complete. The reaction solution was diluted with water and DMF and allowed to
stand for 30 min. The crude reaction mixture was purified by preparatory RP-HPLC with
a Phenomenex Gemini-NX 10µ C-18 110 Å column (150 x 30 mm) using 5% to 95% MeCN in
0.1% aqueous ammonium hydroxide as the eluent. A total of 2.7 mg of the title compound
was obtained (0.003 mmol, 18%). LCMS RT = 0.85 min (Method B); ESI-MS m/z 746.6 [M+H]
+; HRMS m/z 802.5799 [C
43H
75N
7O
7+H]
+.
Example 52
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)propanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate
[0292]

[0293] To a stirred 23 °C suspension of Fmoc-MeVal-OH (1.03 g, 2.90 mmol) in DMF (10 mL)
was added DIEA (1.35 mL, 7.74 mmol), followed by the addition of HATU (1.11 g, 2.90
mmol). After 5 min H-4-Azido-Ala-Dil-OH (0.610 g, 2.90 mmol) was added to the reaction
mixture. After 10 h, analysis by LCMS showed that the reaction was complete. The crude
reaction was diluted with saturated sodium bicarbonate (15 mL) and extracted with
EtOAc (40 mL x 2). The combined organic fractions were washed with brine, dried over
a pad of magnesium sulfate, filtered, and concentrated in vacuo. The crude oil was
purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column (150
x 30 mm) using 5% to 95% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 348 mg of Fmoc-MeVal-4-Azido-Ala-Dil-OH (0.535 mmol,
28%) was obtained as a yellow oil. LCMS RT = 1.80 min (Method B); ESI-MS m/z 651.3
[M+H]
+.
[0294] To a stirred 23 °C suspension of Fmoc-MeVal-4-Azido-Ala-Dil-OH (348.00 mg, 0.535
mmol) and H-Dap-Phe-OMe (372.66 mg, 1.07 mmol) in DMF (10 mL) was added DIEA (276
mg, 0.400 mL, 2.14 mmol) followed by the addition of HATU (408 mg, 1.07 mmol). After
10 h, analysis by LCMS showed the reaction was complete with deprotection of the Fmoc
group occurring concurrently. The crude reaction was diluted with saturated sodium
bicarbonate (10 mL) and extracted with EtOAc (20 mL x 3). The combined organic fractions
were washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini
NX-C18 10µ 110 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous formic
acid as the eluent. A total of 5.00 mg of the title compound was obtained (0.006 mmol,
1%). LCMS RT = 1.08 min (Method B); ESI-MS m/z 759.5 [M+H]
+; HRMS m/z 759.4753 [C
38H
62N
8O
8+H]
+.
Example 53
methyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylproyanoyl)-L-phenylalaninate
[0295]

[0296] To a stirred 23 °C suspension of Fmoc-MeVal-OH (2.46 g, 6.96 mmol) and H-Abu(3-N
3)-Dil-OtBu (2.46 g, 6.38 mmol) in DMF (10 mL) was added DIEA (3.30 g, 4.5 mL, 25.5
mmol), followed by the addition of HATU (3.65 g, 9.57 mmol). After 6 h, analysis by
LCMS showed the reaction was complete. The crude reaction mixture was purified by
preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm)
using 5% to 95% MeCN in 0.1% aqueous formic acid as the eluent. A total of 3.16 g
of Fmoc-MeVal-Abu(3-N3)-Dil-OtBu (4.12 mmol, 65%) was obtained as the formic acid
salt. LCMS RT = 2.08 min (Method A); ESI-MS m/z 722.7 [M+H]
+.
[0297] To a stirred 23 °C suspension of Fmoc-MeVal-Abu(3-N
3)-Dil-OtBu formic acid salt (3.16 g, 4.12 mmol) in CH
2Cl
2 (5.0 mL) was added TFA (10.0 mL). After 14 h, analysis by LCMS showed the reaction
was complete. The volatile organics were evaporated in vacuo to give an oil. The crude
oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å
column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous TFA as the eluent. A total
of 2.26 g of Fmoc-MeVal-Abu(3-N
3)-Dil-OH (2.90 mmol, 66%) was obtained as the TFA salt. LCMS RT = 1.80 min (Method
B); ESI-MS m/z 665.3 [M+H]
+.
[0298] To a stirred 23 °C suspension of Fmoc-MeVal-Abu(3-N
3)-Dil-OH TFA salt (80.0 mg, 0.103 mmol) and H-Dap-Phe-OMe TFA salt (83.9 mg, 0.182
mmol) in DMF (2 mL) was added DIEA (0.083 mL, 0.481 mmol) followed by the addition
of HATU (91.8 mg, 0.241 mmol). After 12 h, analysis by LCMS showed the reaction was
complete. The crude reaction mixture was diluted with DMF and purified by preparatory
RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 10% to
90% MeCN in 0.1% aqueous formic acid as the eluent. A total of 97.0 mg of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-OMe (0.093 mmol, 77%) was obtained as the formic acid salt. LCMS RT
= 1.90 min (Method B); ESI-MS m/z 995.6 [M+H]
+.
[0299] To a stirred 23 °C solution of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-OMe (97.0 mg, 0.093 mmol) in acetonitrile (10 mL) was added piperidine
(5 mL). After 5 h, analysis by LCMS showed the reaction was complete. To the crude
reaction solution was added hexanes (25 mL x 3) in order to extract non-polar by-products.
The acetonitrile layer was concentrated in vacuo and the crude oil was purified by
preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm)
using 5% to 95% MeCN in 0.1% aqueous NH
4OH as the eluent. A total of 74.0 mg of the title compound (0.096 mmol, 103%) was
obtained as a white solid. LCMS RT = 1.09 min (Method B); ESI-MS m/z 773.5 [M+H]
+; HRMS m/z 773.4911 [C
39H
64N
8O
8+H]
+.
Example 54
(2S,3S)-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-amino-1-oxo-3-phenylproyan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide
[0300]

[0301] To a stirred 23 °C suspension of Bod-Dap-OH dicyclohexylamine (10.0 g, 21.3 mmol)
and H-Phe-NH
2 HCl salt (6.42 g, 32.0 mmol) in CH
2Cl
2 (20.0 mL) was added DIEA (11.0 g, 14.9 mL, 85.3 mmol) followed by the addition of
DEPC (5.19 g, 4.80 mL, 0.032 mol). After 10 h, analysis by LCMS showed the reaction
was complete. The crude reaction was washed with H
2O (25 mL x 2), followed by brine (25 mL x 2). The organic fraction was dried over
a pad of magnesium sulfate, filtered and concentrated
in vacuo. The crude orange oil was purified by flash chromatography (silica gel 40 µm, 60 Å,
size) using 2% to 10% methanol in CH
2Cl
2 as the eluent. A total of 7.25 g of Boc-Dap-Phe-NH
2 (16.7 mmol, 78%) was obtained as a yellow oil. LCMS RT = 1.28 min (Method B); ESI-MS
m/z 434.19 [M+H]
+.
[0302] To a stirred 23 °C suspension of Boc-Dap-Phe-NH
2 (7.25 g, 16.7 mmol) in CH
2Cl
2 (10 mL) was added TFA (10 mL). After 5 h, analysis by LCMS showed the reaction was
complete. The volatile organics were evaporated
in vacuo to give crude product, which was used without further purification. A total of 6.00
g of H-Dap-Phe-NH
2 was obtained as an orange solid (13.4 mmol, 80%). LCMS RT = 0.691 min (Method B);
ESI-MS m/z 334.17 [M+H]
+.
[0303] To a stirred 23 °C suspension of Fmoc-MeVal-Abu(3-N
3)-Dil-OH TFA salt (456 mg, 0.586 mmol) and H-Dap-Phe-NH
2 TFA salt (457 mg, 1.02 mmol) in DMF (10 mL) was added DIEA (0.350 g, 0.500 mL, 2.74
mmol) followed by the addition of HATU (0.520 g, 1.37 mmol). After 10 h, analysis
by LCMS showed the reaction was complete. The crude reaction was purified by preparatory
RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 10% to
90% MeCN in 0.1% aqueous formic acid as the eluent. A total of 526 mg of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-NH
2 was obtained as the formic acid salt (0.513 mmol, 75%). LCMS RT = 1.81 min (Method
B); ESI-MS m/z 980.39 [M+H]
+.
[0304] To a stirred 23 °C solution of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-NH
2 (525 mg, 0.513 mmol) in acetonitrile (10 mL) was added piperidine (5 mL). After 2
h, analysis by LCMS showed the reaction was complete. To the crude reaction solution
was added hexanes (15 mL x 3). The acetonitrile layer was concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous TFA as the eluent.
A total of 354 mg of the title compound was obtained as the TFA salt (0.406 mmol,
79%). LCMS RT = 1.15 min (Method B); ESI-MS m/z 758.24 [M+H]
+; HRMS m/z 758.4915 [C
38H
63N
9O
7+H]
+.
Example 55
((2S,3S)-3-azido-N-((3R,4S,5S)-1-((S)-2-((1R,2R)-3-(((S)-1-(tert-butylamino)-1-oxo-3-phenylproyan-2-yl)amino)-1-methoxy-2-methyl-3-oxopropyl)pyrrolidin-1-yl)-3-methoxy-5-methyl-1-oxoheptan-4-yl)-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide
[0305]

[0306] To a stirred room temperature solution of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-OH (111 mg, 0.113 mmol),
tert-butyl amine hydrochloride (31.5 mg, 0.287 mmol), HATU (92.0 mg, 0.242 mmol) in DMF
(1.0 mL) was added Hunig's base (0.079 mL, 0.454 mmol). After 1 h, analysis by LCMS
showed the reaction was complete. The crude reaction mixture was diluted with ethyl
acetate and the organic fraction were washed with 1 N HCl and brine. The organic fraction
was dried over magnesium sulfate, filtered and concentrated under reduced pressure.
The crude yellow oil was dissolved in piperidine (2.0 mL) and acetonitrile (5.0 mL).
After 1 h, analysis by LCMS showed the reaction was complete. The acetonitrile layer
was extracted with hexanes (2x) and the acetonitrile layer was concentrated under
reduced pressure. The crude oil was purified by preparatory RP-HPLC with a Phenomenex
Gemini-NX 10µ C-18 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous
ammonium hydroxide as the eluent. A total of 50.3 mg of the title compound was obtained
(0.062 mmol, 55%). LCMS RT = 1.29 min (Method B); ESI-MS m/z 814.1 [M+H]
+; HRMS m/z 814.5541 [C
42H
71N
9O
7+H]
+.
Example 56
tert-butyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate
[0307]

[0308] To a stirred 25 °C solution of Boc-Dap-OH dicyclohexylamine salt (6.47 g, 13.8 mmol)
and H-Phe-OtBu (3.91 g , 15.2 mmol) in DCM (20 mL) was added DIEA (8.76 mL, 55.2 mmol),
followed by the addition of DEPC (3.12 mL, 20.7). After 8 h, analysis by LCMS showed
the reaction was complete. The volatile organics were evaporated
in vacuo to give crude product that was used without further purification. A total of 5.35
g of Boc-Dap-Phe-OtBu was obtained (10.9 mmol, 79%). LCMS RT = 2.89 min (Method A);
ESI-MS m/z 491.48 [M+H]
+.
[0309] To a stirred room temperature solution of Boc-Dap-Phe-OtBu (5.25 g, 10.7 mmol) in
CH
2Cl
2 (10.0 mL) was added TFA (10.0 mL). After 12 h, analysis by LCMS showed the reaction
was complete. The crude oil was purified by preparatory RP-HPLC with a Phenomenex
Synergi 10µ Max-RP 80 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.05% aqueous
TFA as the eluent. A total of 2.85 g of H-Dap-Phe-OtBu was obtained as the TFA salt
(5.65 mmol, 68%). LCMS RT = 1.82 min (Method A); ESI-MS m/z 391.02 [M+H]
+.
[0310] To a stirred 23 °C suspension of Fmoc-MeVal-Abu(3-N
3)-Dil-OH TFA salt (410 mg, 0.527 mmol) and H-Dap-Phe-OtBu TFA salt (482 mg, 0.956
mmol) in DMF (10 mL) was added DIEA (319 mg, 430 µL, 2.47 mmol) followed by the addition
of HATU (470 mg, 1.23 mmol). After 10 h, analysis by LCMS showed the reaction was
complete along with 10% of the Fmoc group being removed. The crude reaction mixture
was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18 10µ 110 Å column
(150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous formic acid as the eluent. A total
of 26.0 mg of the title compound was obtained as a white formic acid salt (0.030 mmol,
5%). LCMS RT = 1.41 min (Method B); ESI-MS m/z 815.33 [M+H]
+; HRMS m/z 815.5383 [C
42H
70N
8O
8+H]
+.
Example 57
((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalanine
[0311]

[0312] To a stirred 23 °C suspension of Fmoc-MeVal-Abu(3-N
3)-Dil-OH TFA salt (410 mg, 0.527 mmol) and H-Dap-Phe-OtBu TFA salt (482 mg, 0.956
mmol) in DMF (10 mL) was added DIEA (319 mg, 430 µL, 2.47 mmol) followed by the addition
of HATU (470 mg, 1.23 mmol). After 10 h, analysis by LCMS showed the reaction was
complete. The crude reaction mixture was purified by preparatory RP-HPLC with a Phenomenex
Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous
formic acid as the eluent. A total of 648 mg of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-OtBu was obtained as a white formic acid salt (0.598 mmol, 97%). LCMS
RT = 1.41 min (Method B); ESI-MS m/z 1037.41 [M+H]
+.
[0313] To a stirred 23 °C suspension of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-OtBu formic acid salt (648 mg, 0.598 mmol) in CH
2Cl
2 (5.00 mL) was added TFA (5.00 mL). After 2 h, analysis by LCMS showed the reaction
was complete. The volatile organics were evaporated in vacuo to give a brown oil.
The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous TFA as the eluent.
A total of 502 mg of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-OH was obtained as the TFA salt (0.458 mmol, 77%). LCMS RT = 1.81 min
(Method B); ESI-MS m/z 981.22 [M+H]
+.
[0314] To a stirred 23 °C solution of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-Phe-OH TFA salt (392 mg, 0.382 mmol) in acetonitrile (10 mL) was added piperidine
(5 mL). After 2 h, analysis by LCMS showed the reaction was complete. To the crude
reaction solution was added hexanes (15 mL x 3). The acetonitrile layer was concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous TFA as the eluent.
A total of 360 mg of the enriched title compound was obtained as the TFA salt. LCMS
RT = 1.19 min (Method B); ESI-MS m/z 759.13 [M+H]
+; HRMS m/z 759.4755 [C
38H
62N
8O
8+H]
+.
Example 58
tert-butyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylproyanoyl)-L-phenylalaninate
[0315]

[0316] To a stirred 23 °C suspension of Dov-Abu(3-N
3)-Dil-OH TFA salt (327 mg, 0.574 mmol) and H-Dap-Phe-OtBu TFA salt (0.340 g, 0.675
mmol) in DMF (10 mL) was added DIEA (0.370 g, 0.500 mL, 2.87 mmol) followed by the
addition of HATU (0.550 g, 1.43 mmol). After 10 h, analysis by LCMS showed the reaction
was complete. The crude reaction was purified by preparatory RP-HPLC with a Phenomenex
Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous
formic acid as the eluent. A total of 453 mg (0.518 mmol, 72%) of the title compound
was obtained as the formic acid salt. LCMS RT = 1.42 min (Method B); ESI-MS m/z 828.94
[M+H]
+; HRMS m/z 829.5536 [C
43H
72N
8O
8+H]
+.
Example 59
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0317]

[0318] To a stirred 23 °C suspension of Boc-Dap-OH dicyclohexylamine salt (2.48 g, 5.29
mmol) and (S)-2-Phenyl-1-(1H-tetrazol-5-yl)ethanamine (1.00 g, 5.29 mmol) in CH
2Cl
2 (20.0 mL) was added DIEA (2.73 g, 3.7 mL, 21.1 mmol) followed by the addition of
DEPC (1.29 g, 1.20 mL, 7.93 mmol). After 10 h, analysis by LCMS showed the reaction
was complete. The volatile organics were evaporated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous formic acid as
the eluent. A total of 2.52 g of Boc-Dap-(S)-2-Phenyl-1-(1H-tetrazol-5-yl)ethanamine
(4.99 mmol, 94%) was obtained as the formic acid salt. LCMS RT = 1.35 min (Method
B); ESI-MS m/z 459.2 [M+H]
+.
[0319] To a stirred 23 °C suspension of Boc-Dap-(S)-2-Phenyl-1-(1H-tetrazol-5-yl)ethanamine
(2.52 g, 4.99 mmol) in CH
2Cl
2 (10.0 mL) was added TFA (5.00 mL). After 5 h, analysis by LCMS showed the reaction
was complete. The volatile organics were evaporated
in vacuo to give crude product that was used without further purification. A total of 2.43
g of H-Dap-(S)-2-Phenyl-1-(1H-tetrazol-5-yl)ethanamine (5.14 mmol, 84%) was obtained
as the TFA salt. LCMS RT = 0.575 min (Method B); ESI-MS m/z 359.2 [M+H]
+.
[0320] To a stirred 23 °C suspension of Dov-Abu(3-N
3)-Dil-OH TFA salt (305 mg, 0.668 mmol) and H-Dap-(S)-2-Phenyl-1-(1H-tetrazol-5-yl)ethanamine
TFA salt (0.36 g, 1.002 mmol) in DMF (10 mL) was added DIEA (0.35 g, 0.5 mL, 2.67
mmol) followed by the addition of HATU (509 mg, 1.34 mmol). After 10 h, analysis by
LCMS showed the reaction was complete. The crude reaction was diluted with saturated
sodium bicarbonate (10 mL) and extracted with EtOAc (20 mL x 3). The combined organic
fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous formic acid as
the eluent. A total of 47.0 mg of the title compound was obtained as the formic acid
salt (0.056 mmol, 8%). LCMS RT = 1.24 min (Method B); ESI-MS m/z 797.3 [M+H]
+; HRMS m/z 797.5139 [C
39H
64N
12O
6+H]
+.
Example 60
(2S,3S)-3-azido-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methyl-2-((S)-3-methyl-2-(methylamino)butanamido)butanamide
[0321]

[0322] To a stirred 23 °C suspension of Fmoc-MeVal-Abu(3-N
3)-Dil-OH TFA salt (0.491 g, 0.631 mmol) and H-Dap-(S)-2-Phenyl-1-(1H-tetrazol-5-yl)ethanamine
TFA salt (0.532 g, 1.13 mmol) in DMF (10 mL) was added DIEA (0.381 g, 0.500 mL, 2.97
mmol) followed by the addition of HATU (0.57 g, 1.486 mmol). After 10 h, analysis
by LCMS showed the reaction was complete. The crude reaction was diluted with saturated
sodium bicarbonate (10 mL) and extracted with EtOAc (20 mL x 3). The combined organic
fractions were washed with brine, dried over a pad of magnesium sulfate, filtered,
and concentrated in vacuo. The crude oil was purified by preparatory RP-HPLC with
a Phenomenex Gemini NX-C18 10µ 110 Å column (150 x 30 mm) using 10% to 90% MeCN in
0.1% aqueous formic acid as the eluent. A total of 125 mg of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-(S)-2-Phenyl-1-(1H-tetrazol-5-yl)ethanamine was obtained as the formic acid
salt (0.119 mmol, 16%). LCMS RT = 1.94 min (Method B); ESI-MS m/z 1005.35 [M+H]
+.
[0323] To a stirred 23 °C solution of Fmoc-MeVal-Abu(3-N
3)-Dil-Dap-(S)-2-Phenyl-1-(1H-tetrazol-5-yl)ethanamine (525 mg, 0.499 mmol) in acetonitrile
(10 mL) was added piperidine (5 mL). After 2 h, analysis by LCMS showed the reaction
was complete. To the crude reaction solution was added hexanes (x3). The acetonitrile
layer was concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous TFA as the eluent.
A total of 20.0 mg of the title compound was obtained as the TFA salt (0.022 mmol,
5%). LCMS RT = 1.37 min (Method B); ESI-MS m/z 783.42 [M+H]
+; HRMS m/z 783.4979 [C
38H
62N
12O
6+H]
+.
Example 61
(2S,3S)-3-azido-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(thiazol-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0324]

[0325] To a stirred 23 °C suspension of Boc-Dap-OH dicyclohexylamine salt (1.95 g, 4.154
mmol) and (S)-2-phenyl-1-(2-thiazol-2-yl)ethylamine (1.00 g, 4.154 mmol) in CH
2Cl
2 (20.0 mL) was added DIEA (2.15 g, 2.9 mL, 16.615 mmol) followed by the addition of
DEPC (1.01 g, 0.9 mL, 0.006 mol). After 10 h, analysis by LCMS showed the reaction
was complete. The crude reaction mixture was washed with H
2O (25 mL x 2), followed by brine (25 mL x 2). The organic fraction was dried over
a pad of MgSO
4, filtered and concentrated
in vacuo. A total of 1.65 g of Boc-Dap-(S)-2-phenyl-1-(thiazol-2-yl)ethanamine (3.48 mmol,
84%) was obtained as a yellow oil. LCMS RT = 1.59 min (Method B); ESI-MS m/z 475.2[M+H]
+.
[0326] To a stirred 23 °C suspension of Boc-Dap-(S)-2-phenyl-1-(thiazol-2-yl)ethanamine
(1.65 g, 3.49 mmol) in CH
2Cl
2 (10.0 mL) was added TFA (10.0 mL). After 4 h, analysis by LCMS showed the reaction
was complete. The volatile organics were evaporated
in vacuo. The crude oil was dissolved in DMF (5 mL) and triethylamine (1 mL) to achieve a pH
of 8. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 5% to 95% MeCN in 0.1% aqueous TFA as the eluent.
A total of 935 mg of H-Dap-(S)-2-phenyl-1-(thiazol-2-yl)ethanamine (1.92 mmol, 55%)
was obtained as the TFA salt. LCMS RT = 1.04 min (Method B); ESI-MS m/z 375.0 [M+H]
+.
[0327] To a stirred 23 °C suspension of Dov-Abu(3-N
3)-Dil-OH TFA salt (302 mg, 0.661 mmol) and H-Dap-(S)-2-phenyl-1-(thiazol-2-yl)ethanamine
TFA salt (247 mg, 0.661 mmol) in DMF (10 mL) was added DIEA (0.34 g, 0.5 mL, 2.65
mmol) followed by HATU (504 mg, 1.32 mmol). After 10 h, analysis by LCMS showed the
reaction was complete. The crude reaction mixture was diluted with saturated sodium
bicarbonate (10 mL) and extracted with EtOAc (20 mL x 3). The combined organic fractions
were washed with brine, dried over a pad of magnesium sulfate, filtered, and concentrated
in vacuo. The crude oil was purified by preparatory RP-HPLC with a Phenomenex Gemini NX-C18
10µ 110 Å column (150 x 30 mm) using 10% to 90% MeCN in 0.1% aqueous TFA as the eluent.
A total of 111 mg of the title compound was obtained as the TFA salt (0.120 mmol,
18%). LCMS RT = 1.33 min (Method B); ESI-MS m/z 812.2 [M+H]
+; HRMS m/z 812.4835 [C
41H
65N
9O
6S+H]
+.
Example 62
tert-butyl ((2R,3R)-3-((S)-1-((3R,4S,5S)-4-((2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-methylbutanamido)-3-methoxy-5-methylheptanoyl)pyrrolidin-2-yl)-3-methoxy-2-methylpropanoyl)-L-phenylalaninate
[0328]

[0329] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-O
t-Bu formic acid salt (102.5 mg, 0.117 mmol) in DMF (1.0 mL) was added trimethylphosphine
in THF (1 M, 0.350 mL, 0.350 mmol). After 2 h, analysis by LCMS showed that the reaction
was complete. The crude reaction mixture was purified by preparatory RP-HPLC with
a Phenomenex Gemini-NX 10µ C-18 110 Å column (150 x 30 mm) using 5% to 95% MeCN in
0.1% aqueous formic acid as the eluent. A total of 70.1 mg of the title compound was
obtained as a formic acid salt (0.083 mmol, 70%). LCMS RT = 1.22 min (Method B); ESI-MS
m/z 803.3 [M+H]
+; HRMS m/z 803.5642 [C
43H
74N
6O
8+H]
+.
Example 63
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(1H-tetrazol-5-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0330]

[0331] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-Tetrazole formic acid salt (19.4 mg, 0.023 mmol) in DMF (0.2 mL) was
added trimethylphosphine in THF (1 M, 0.068 mL, 0.068 mmol). After 2 h, analysis by
LCMS showed that the reaction was complete. The crude reaction mixture was purified
by preparatory RP-HPLC with a Phenomenex Gemini-NX 10µ C-18 110 Å column (150 x 30
mm) using 5% to 95% MeCN in 0.1% aqueous formic acid as the eluent. A total of 9.9
mg of the title compound was obtained as a formic acid salt (0.012 mmol, 53%). LCMS
RT = 1.07 min (Method B); ESI-MS m/z 771.2 [M+H]
+; HRMS m/z 771.5233 [C
39H
66N
10O
8+H]
+.
Example 64
(2S,3S)-3-amino-2-((S)-2-(dimethylamino)-3-methylbutanamido)-N-((3R,4S,5S)-3-methoxy-1-((S)-2-((1R,2R)-1-methoxy-2-methyl-3-oxo-3-(((S)-2-phenyl-1-(thiazol-2-yl)ethyl)amino)propyl)pyrrolidin-1-yl)-5-methyl-1-oxoheptan-4-yl)-N-methylbutanamide
[0332]

[0333] To a stirred room temperature solution of Dov-Abu(3-N
3)-Dil-Dap-Phe-Thiazole formic acid salt (37.2 mg, 0.043 mmol) in THF (0.2 mL) was
added trimethylphosphine in THF (1 M, 0.090 mL, 0.090 mmol). After 1 h, analysis by
LCMS showed that the reaction was complete. The crude reaction mixture was purified
by preparatory RP-HPLC with a Phenomenex Gemini-NX 10µ C-18 110 Å column (150 x 30
mm) using 5% to 95% MeCN in 0.1% aqueous formic acid as the eluent. A total of 16.8
mg of the title compound was obtained as a formic acid salt (0.020 mmol, 47%). LCMS
RT = 1.15 min (Method B); ESI-MS m/z 786.2 [M+H]
+; HRMS m/z 786.4940 [C
41H
67N
7O
6S+H]
+.
Example B1
In vitro Cytotoxicity Experiments
[0334] The in vitro efficacy of the compounds was measured by evaluating their cytotoxic
activity on various cancer cell lines. This assay was conducted in clear tissue-culture
treated 96-well plates. The cell lines used were PC3 (human prostate carcinoma), HCC-1954
(human mammary ductal carcinoma), and HCT15 (human colorectal adenocarcinoma, Pgp-expressing).
Cells were seeded at approximately 1,000-1,500 cells per well in 50 µL of growth media
(RPMI-1640 + 10% heat-inactivated fetal bovine serum) and incubated overnight at 37
°C with 5% CO
2 to allow them to attach. The next day, 50 µL of a 2x stock of vehicle control (DMSO)
or compounds at varying concentrations was added to each well in triplicate. In addition,
control wells with no cells or untreated cells alone were used. The plates were incubated
in the humidified tissue culture incubator with 5% CO
2 at 37 °C for 4 to 6 days after addition of compounds to measure cytotoxicity. After
4 to 6 days, 20 µL of PrestoBlue™ Cell Viability Reagent (Life Technologies #A13261)
was added per well. Plates were incubated at 37 °C for 1 to 2 h. Fluorescence was
recorded at 540 ex/590 em using the Biotek Synergy™ H4 plate reader. Representative
data is graphed as percent survival compared to untreated control wells. Data for
compounds tested in this assay are graphed as percent survival compared to untreated
control wells, as shown in Figures 9-30.
Example B2
Determination of Tubulin Polymerization
[0335] The inhibition of tubulin polymerization by the compounds described herein was evaluated
on bovine brain tubulin. To evaluate the activity of compounds, tubulin was seeded
at approximately 400 µg per well in 100 µL of general tubulin buffer, and then treated
with 10 µM final concentration of compound in duplicate at the initiation of the assay.
Tubulin polymerization assays were usually carried out at 37 °C for 60 min after the
addition of test compounds. Tubulin polymerization was determined by absorbance spectroscopy
using the optical density value at 340 nm. To assess the amount of polymerized tubulin,
the optical density value at 340 nm was obtained each minute after the addition of
test compounds. For analysis, the extent of tubulin polymerization by the compound-treated
tubulin was compared to that of the control, which was buffer-treated tubulin. In
particular, tubulin inhibition studies were performed using HTS-Tubulin Polymerization
Assay Kit (Cytoskeleton Inc.; Catalog # BK004P), using the following sample protocol:
- 1. Pre-warm the spectrophotometer and 96-well plates to 37 °C for 30 min prior to
starting the assay. A warm plate is essential for high polymerization activity and
reproducible results.
- 2. Enter all plate reader parameters (Absorbance at 340 nm, 37 °C, one read each minute)
so that the spectrophotometer is ready for use. Once the tubulin is aliquoted into
the 37 °C wells, the reading must begin immediately.
- 3. Warm 500 µL of general tubulin buffer to room temperature. Warm buffer is needed
for tubulin ligand dilutions.
- 4. Paclitaxel is included as a control. Use 10 µL of Paclitaxel per well, which brings
the final concentration to 10 µM final.
- 5. Make cold assay buffer: general tubulin buffer, 1 mM GTP, 10% glycerol.
- 6. Resuspend 4mgs of tubulin with 1 mL of cold assay buffer to bring the final protein
concentration of 4 mg/mL. Place the tubes on ice and allow 3 min for the complete
resuspension of the protein.
- 7. Prepare selected compound at 10X concentration in assay buffer.
- 8. Pipette 10 µL of the 10X concentrated compound into the required number of wells
of the pre-warmed plate. Incubate the plate for 2 min at 37 °C.
- 9. Pipette 10 µL of assay buffer only into two control wells (buffer-treated tubulin).
- 10. Pipette 100 µL of tubulin into the required number of wells (two wells should
be the zero compound controls, which are buffer-treated).
- 11. Immediately place the plate into the spectrophotometer at 37 °C and start recording
the optical density at 340 nm each minute. Increasing optical density values at 340
nm equate to increasing tubulin polymerization.
[0336] Data for compounds tested in this assay are presented in Figures 1-8.
Example B3
Determination of In Vivo Efficacy of Test Compounds: Efficacy evaluation in subcutaneously
established human bladder cancer cell line SW780 implanted in ICR SCID mice
[0337] For animal in vivo studies, the test compounds are diluted with 20 mM Histidine,
5% Sucrose, pH 6 with 15% DMSO. Male ICR SCID mice (Taconic Farm, Hudson, NY) are
housed in standard rodent micro isolator cages. Environment controls for the animal
rooms are set to maintain a temperature between 20-24 °C, a relative humidity between
30% to 70%, and an approximate 12 h light/12 h dark cycle. Food and water are provided
ad libitum. After 72 h of acclimatization, the mice are implanted with SW780 human bladder cancer
cells (2 x 10
6 cells/mouse), suspended in 50% complete cultrex (Trevigen, Inc.) mixed with PBS (Gibco),
and the tumor growth rate is monitored. When the average tumor volume reaches ∼200
mm
3, tumors are size-matched and mice are randomized to treatment groups (n = 8 or 10).
The tumor-bearing mice are treated i.v. with Vehicle or test compound at 2 or 4 mg/kg
(mpk) on a QW dosing schedule for 3 weeks. Tumor volume is assessed twice weekly using
caliper measurement.