Background
[0001] Myeloid Cell Leukemia 1 (Mcl-1) is an important anti-apoptotic member of the BCL-2
family of proteins and a master regulator of cell survival. Amplification of the MCL1
gene and/or overexpression of the Mcl-1 protein has been observed in multiple cancer
types and is commonly implicated in tumor development. In fact, MCL1 is one of the
most frequently amplified genes in human cancer. In many malignancies, Mcl-1 is a
critical survival factor and it has been shown to mediate drug resistance to a variety
of anti-cancer agents.
[0002] Mcl-1 promotes cell survival by binding to pro-apoptotic proteins like Bim, Noxa,
Bak, and Bax and neutralizing their death-inducing activities. Inhibition of Mcl-1
thereby releases these pro-apoptotic proteins, often leading to the induction of apoptosis
in tumor cells dependent on Mcl-1 for survival. Therapeutically targeting Mcl-1 alone
or in combination with other therapies, therefore, is a promising strategy to treat
a multitude of malignancies and to overcome drug resistance in many human cancers.
US2016/0106731 represents an example of prior art inhibitors of Mcl-1. The compound chemically named
(
Ra)-(+)-17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.14,7.011,15.016,21,020,24.030,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylic
acid (referred to as Compound 1):

is a potent Mcl-1 inhibitor. It is also disclosed in
WO2017/182625, which has been published after the presently claimed priority date. It is described
in more detail below. Accordingly, there is a need to develop new methods for synthesizing
Compound I in an efficient manner.
Brief Summary
[0003] In the following reference will be made to subject-matter which is just disclosed
and/or part of the disclosure. Such subject-matter may include subject-matter not
encompassed by the invention and thus not falling under the intended scope of protection,
which is solely defined by the scope of appended claim 1. Disclosed herein are processes
and intermediates useful for the synthesis of Compound 1:

Brief Description of the Drawings
[0005]
Figure 1 illustrates the powder X-ray diffraction diagram of Form A (Ra)-17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.14,7.011,15.016,21.020,24.030,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylic
acid monohydrate.
Figure 2 illustrates the differential scanning calorimetry (DSC) and thermogravimetric analysis
(TGA) traces of Form A (Ra)-17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.14,7.011,15.016,21.020,24.030,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylic
acid monohydrate.
Detailed Description
[0006] In some embodiments, provided herein are processes and intermediates useful for the
synthesis of (
Ra)-(+)-17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.1
4,7.0
11,15.0
16,21.0
20,24.0
30,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylic
acid (Compound 1):

[0007] Compound 1 is a potent Mcl-1 inhibitor as illustrated in Example 1,
infra, and may be useful in the treatment of cancer, including hematological malignancies
such as acute myeloid leukemia, multiple myeloma, mantle cell lymphoma, chronic lymphocytic
leukemia, diffuse large B cell lymphoma, Burkitt's lymphoma, follicular lymphoma and
solid tumors, for example, non-small cell lung cancer (NSCLC), small cell lung cancer
(SCLC), breast cancer, neuroblastoma, prostate cancer, melanoma, pancreatic cancer,
uterine, endometrial and colon cancer. Due to Compound 1's structural complexity,
arriving at an efficient synthesis may be an important aspect in developing Compound
1 as a potential cancer treatment.
Intermediates
[0008] In some embodiments, disclosed is (E/Z)-dimethyl 2-(2-(2-bromo-3-chlorophenyl)hydrazono)hexanedioate
(Intermediate 1):

[0009] In some embodiments, disclosed is a compound of formula (d):

wherein R1 is a protecting group or hydrogen. In some embodiments, R1 is p-methoxybenzyl.
In some embodiments, the compound of formula (a) is (±)-3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid (Intermediate 6):

[0010] In some embodiments, disclosed is a compound of formula (e):

wherein R1 is a protecting group or hydrogen. In some embodiments, R1 is p-methoxybenzyl.
In some embodiments, the compound of formula (b) is (
Ra)-3-(2-Carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid -(1
R)-1-(2-nitrophenyl)ethanamine (1:1 salt) (Intermediate 7):

[0011] In some embodiments, disclosed is methyl 5-(((4-hydroxynaphthalen-2-yl)thio)methyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 12):

[0012] In some embodiments, disclosed is a 3-(((3-(hydroxymethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 13):

[0013] In some embodiments, disclosed is 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 14):

[0014] In some embodiments, disclosed is 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate (Intermediate 15):

[0015] In some embodiments, disclosed is 3-(((3-((acetylthio)methyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate (Intermediate 16):

Synthesis
[0016] In some embodiments, disclosed is a method of synthesizing (E/Z)-dimethyl 2-(2-(2-bromo-3-chlorophenyl)hydrazono)hexanedioate
(Intermediate 1):

comprising the steps of (i) contacting 2-bromo-3-chloroaniline with methyl 2-oxocyclopentane-1-carboxylate
with a diazotization agent in an acidic aqueous system; (ii) adding methyl 2-oxocyclopentane-1-carboxylate
and an aqueous base to the acidic aqueous system; (iii) isolating the resulting hydrazone;
(iv) contacting the hydrazone with an acidic solution; and (v) isolating (E/Z)-dimethyl
2-(2-(2-bromo-3-chlorophenyl)hydrazono)hexanedioate (Intermediate 1). In some embodiments,
the diazotization agent is NaNO
2, Ca(NO
2)
2 or KNO
2. In some embodiments, the diazotization agent is NaNO
2. In some embodiments, the acidic aqueous system comprises a protic acid and water.
In some embodiments, the protic acid is hydrochloric acid. In some embodiments, the
aqueous base is potassium acetate, potassium hydroxide, sodium hydroxide, potassium
carbonate, sodium carbonate or potassium phosphate. In some embodiments the aqueous
base is potassium acetate. In some embodiments, the acidic solution comprises an acid
and an alcohol. In some embodiments, the acidic solution comprises concentrated sulfuric
acid and methanol, methanesulfonic acid and methanol or p-toluenesulfonic acid and
methanol. In some embodiments, the acidic solution comprises concentrated sulfuric
acid and methanol.
[0017] In some embodiments, disclosed is a method of synthesizing methyl 7-bromo-6-chloro-3-(3-methoxy-3-oxopropyl)-1H-indole-2-carboxylate
(Intermediate 2):

comprising the steps of (i) contacting (E/Z)-dimethyl 2-(2-(2-bromo-3-chlorophenyl)hydrazono)hexanedioate
(Intermediate 1) with an acidic solution; and (ii) isolating methyl 7-bromo-6-chloro-3-(3-methoxy-3-oxopropyl)-1H-indole-2-carboxylate
(Intermediate 2). In some embodiments, the acidic solution comprises an acid and an
alcohol. In some embodiments, the acidic solution comprises concentrated sulfuric
acid and methanol, methanesulfonic acid and methanol or p-toluenesulfonic acid and
methanol. In some embodiments, the acidic solution comprises concentrated sulfuric
acid and methanol. In some embodiment, the method of synthesizing Intermediate 2 further
comprises the step of heating the acidic solution prior to isolating Intermediate
2.
[0018] In some embodiments, disclosed is a method of synthesizing a compound of formula
(a):

wherein R1 is a protecting group or hydrogen, comprising the steps of: (i) contacting
ethyl 1,5-dimethyl-1H-pyrazole-3-carboxylate with a reducing agent in the presence
of a first solvent to form a first solution; (ii) isolating (1,5-dimethyl-1H-pyrazol-3-yl)methanol;
(iii) contacting (1,5-dimethyl-1H-pyrazol-3-yl)methanol with a brominating agent in
the presence of a second solvent to form (4-bromo-1,5-dimethyl-1H-pyrazol-3-yl)methanol;
(iv) isolating (4-bromo-1,5-dimethyl-1H-pyrazol-3-yl)methanol; (v) contacting (4-bromo-1,5-dimethyl-1H-pyrazol-3-yl)methanol
with a base, optionally a phase transfer catalyst, and a protecting group precursor
in a third solvent; and (v) isolating the compound of formula (a). In some embodiments,
the reducing agent is selected from lithium aluminum hydride (LAH), diisobutylaluminum
hydride (DIBAL), lithium borohydride (LiBH
4), sodium bis(2-methoxyethoxy)aluminum hydride (Red-Al
®) and sodium borohydride (NaBH
4). In some embodiments, the reducing agent is lithium aluminum hydride. In some embodiments,
the first solvent is selected from toluene, THF, 2-methyltetrahydrofuran, MTBE, methanol,
ethanol and diethyl ether. In some embodiments, the first solvent is tetrahydrofuran.
In some embodiments, the second solvent is tetrahydrofuran. In some embodiments, the
brominating agent is 1,3-dibromo-5,5-dimethylhydantoin (DBDMH). In some embodiments,
the brominating agent is N-bromosuccinimide. In some embodiments, the base is lithium
hydroxide, sodium hydroxide, potassium hydroxide, sodium hydride, lithium hydride
or potassium hydride. In some embodiments, a phase transfer catalyst is used, for
example Bu
4N·HSO
4 or benzyltrimethylammonium chloride. In some embodiments the base is potassium hydroxide
and the phase transfer catalyst is tetrabutylammonium bisulfate. In some embodiments,
the protecting group precursor is 1-(chloromethyl)-4-methoxybenzene. In some embodiments,
R1 is p-methoxybenzyl. In some embodiments, the compound of formula (a) is 4-bromo-3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazole
(Intermediate 3):

[0019] In some embodiments, disclosed is a method of synthesizing a compound of formula
(b):

wherein R1 is a protecting group or hydrogen, comprising the steps of: (i) contacting
a compound of formula (a) with a metalating agent in the presence of a solvent; (ii)
adding 2-isopropoxy-4,4,5,5-tetramethyl-1,3,2-dioxaborolane; (iii) adding an acidic
solvent solution; and (iv) isolating the compound of formula (b). In some embodiments,
the metalating agent is n-butyl lithium. In some embodiments, the solvent is tetrahydrofuran.
In some embodiments, the acidic solvent solution comprises acetic acid and toluene.
In some embodiments, R1 is p-methoxybenzyl. In some embodiments, the compound of formula
(a) is 4-bromo-3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazole (Intermediate
3). In some embodiments, the compound of formula (b) is 3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole
(Intermediate 4):

[0020] In some embodiments, disclosed is a method of synthesizing a compound of formula
(c):

wherein R1 is a protecting group or hydrogen, comprising the steps of: (i) contacting
a compound of formula (b) with methyl 7-bromo-6-chloro-3-(3-methoxy-3-oxopropyl)-1H-indole-2-carboxylate
(Intermediate 2) with a palladium catalyst in the presence of a base and solvent;
and (ii) isolating the compound of formula (c). In some embodiments, the palladium
catalyst is selected from tetrakis(triphenylphosphine)palladium(0), bis(di-tert-butyl(4-dimethylaminophenyl)phosphine)dichloropalladium(II)
and 1,1'-bis(di-tert-butylphosphino)ferrocene palladium dichloride. In some embodiments
the base is potassium carbonate or potassium phosphate. In some embodiments, the palladium
catalyst is 1,1'-bis(di-
tert-butylphosphino)ferrocene palladium dichloride. In some embodiments, the solvent is
dioxane, water or a combination thereof. In some embodiments, R1 is p-methoxybenzyl.
In some embodiments the compound of formula (b) is is 3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole
(Intermediate 4). In some embodiments, the compound of formula (c) is (±)-methyl 6-chloro-3-(3-methoxy-3-oxopropyl)-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1H-indole-2-carboxylate
(Intermediate 5):

[0021] In some embodiments, disclosed is a method of synthesizing a compound of formula
(d):

wherein R1 is a protecting group or hydrogen, comprising the steps of (i) contacting
a compound of formula (c) with a methylating agent in a solvent; (ii) treating the
resulting methylated derivative with an ester hydrolysis reagent and (iii) isolating
the compound of formula (d). In some embodiments, the compound of formula (c) is Intermediate
5. In some embodiments, the ester hydrolysis reagent is a hydroxide base selected
from lithium hydroxide, potassium hydroxide and sodium hydroxide. In some embodiments,
the methylating agent is selected from methyl iodide, dimethylsulfate and dimethyl
formamide-dimethyl acetal (DMF-DMA). In some embodiments, the methylating agent is
dimethyl formamide-dimethyl acetal. In some embodiments, the solvent is toluene.
[0022] In some embodiments, R1 is p-methoxybenzyl. In some embodiments, the compound of
formula (c) is (±)-methyl 6-chloro-3-(3-methoxy-3-oxopropyl)-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1H-indole-2-carboxylate
(Intermediate 5). In some embodiments, the compound of formula (d) is (±)-3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid (Intermediate 6):

[0023] In some embodiments, disclosed is a method of synthesizing a compound of formula
(e):

wherein R1 is a protecting group or hydrogen, comprising the steps of: (i) contacting
a compound of formula (d) with (1R)-1-(2-nitrophenyl)ethanamine hydrochloride in the
presence of a base and a solvent; and (ii) isolating the compound of formula (e).
In some embodiments, the base is sodium hydroxide, potassium hydroxide, diisopropylethylamine
or triethylamine. In some embodiments, the base is sodium hydroxide. In some embodiments,
the solvent is water, THF, methanol, ethanol, isopropanol, n-butanol, methyl ethyl
ketone or a combination thereof. In some embodiments, the solvent is water, ethanol
or a combination thereof. In some embodiments, R1 is p-methoxybenzyl. In some embodiments,
the compound of formula (d) is (±)-3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid (Intermediate 6). In some embodiments, the compound of formula (e) is (
Ra)-3-(2-Carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid-(1
R)-1-(2-nitrophenyl)ethanamine (1:1 salt) (Intermediate 7):

[0024] In some embodiments, disclosed is a method of synthesizing (
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-methoxy-3-oxopropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 8):

comprising the steps of (i) contacting a compound of formula (e) with an acid in the
presence of a first solvent; (ii) isolating the free acid component of a compound
of formula (e); (iii) treating the free acid with a methylating agent or methanol
in a second solvent; (iv) removing the protecting group, optionally in a third solvent;
and (v) isolating (
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-methoxy-3-oxopropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 8). In some embodiments, the compound of formula (e) is
Ra)-3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid - (1
R)-1-(2-nitrophenyl)ethanamine (1:1 salt) (Intermediate 7). In some embodiments, the
first solvent is tetrahydrofuran, toluene or a combination thereof. In some embodiments,
the methylating agent is DMF-DMA. In some embodiments, the second solvent is toluene.
In some embodiments, the third solvent is methanol. In some embodiments, the protecting
group is removed by acetyl chloride. In some embodiments, the protecting group is
removed by acetyl chloride in methanol. In some embodiments, the protecting group
is removed by an acid, for example, hydrochloric acid formed
in situ via reaction of acetyl chloride with methanol.
[0025] In some embodiments, disclosed is a method of synthesizing (
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-hydroxypropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 9):

comprising the steps of (i) contacting (
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-methoxy-3-oxopropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 8) with a reducing agent in the presence of a solvent; and (ii) isolating
(
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-hydroxypropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 9). In some embodiments, the reducing agent is diisobutyl aluminum hydride.
In some embodiments, the solvent is THF, hexane or a combination thereof.
[0026] In some embodiments, disclosed is a method of synthesizing methyl 5-(chloromethyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 10):

comprising the steps of (i) contacting dimethyl 1-methyl-1H-pyrazole-3,5-dicarboxylate
with a reducing agent in the presence of a solvent; (ii) isolating methyl 3-(hydroxymethyl)-1-methyl-1H-pyrazole-5-carboxylate;
(iii) contacting methyl 3-(hydroxymethyl)-1-methyl-1H-pyrazole-5-carboxylate with
a chlorinating agent; and (iv) isolating methyl 5-(chloromethyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 10). In some embodiments, the solvent is a mixture of methanol and 2-methyltetrahydrofuran.
In some embodiments, the reducing agent is sodium borohydride or lithium borohydride.
In some embodiments the reducing agent is sodium borohydride. In some embodiments
the solvent is methanol, ethanol, water, 2-methyltetrahydrofuran, dimethylacetamide,
DCM, THF, cyclopentyl methyl ether, acetonitrile or a mixture thereof. In some embodiments,
the solvent is a mixture of methanol and 2-methyltetrahydrofuran.
[0027] In some embodiments, disclosed is a method of synthesizing 3-(acetylthio)naphthalen-1-yl
acetate (Intermediate 11):

comprising the steps of (i) contacting sodium 4-hydroxynapthalene-2-sulfonate with
triphenylphosphine and iodine in a solvent; (ii) isolating 3-mercaptonaphthalen-1-ol;
(iii) contacting 3-mercaptonaphthalen-1-ol with an acylating agent in the presence
of an amine base and a nucleophilic catalyst; and (iv) isolating 3-(acetylthio)naphthalen-1-yl
acetate (Intermediate 11). In some embodiments, the solvent is acetonitrile. In some
embodiments, the acylating agent is acetic anhydride or acetyl chloride. In some embodiments,
the acylating agent is acetic anhydride. In some embodiments, the amine base is selected
from triethylamine, pyridine or diisopropylethylamine. In some embodiments, the amine
base is triethylamine. In some embodiments, the nucleophilic catalyst is selected
from 4-dimethylaminopyridine, pyridine and N-methylimidazole. In some embodiments,
the nucleophilic catalyst is 4-dimethylaminopyridine.
[0028] In some embodiments, disclosed is a method of synthesizing methyl 5-(((4-hydroxynaphthalen-2-yl)thio)methyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 12):

comprising the steps of (i) contacting 3-(acetylthio)naphthalen-1-yl acetate (Intermediate
11) with methyl 5-(chloromethyl)-1-methyl-1H-pyrazole-3-carboxylate (Intermediate
10) in the presence of a base and a solvent; and (ii) isolating 5-(((4-hydroxynaphthalen-2-yl)thio)methyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 12). In some embodiments, the base is selected from potassium carbonate,
lithium hydroxide, 1,8-diazabicyclo[5.4.0]undec-7-ene, sodium hydroxide, potassium
hydroxide and sodium ethoxide. In some embodiments, the base is potassium carbonate.
In some embodiments, the solvent is selected from methanol, ethanol, water and combinations
thereof. In some embodiments, the solvent is methanol.
[0029] In some embodiments, disclosed is a method of synthesizing 3-(((3-(hydroxymethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 13):

comprising the steps of (i) contacting methyl 5-(((4-hydroxynaphthalen-2-yl)thio)methyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 12) with a reducing agent in a solvent; and (ii) isolating 3-(((3-(hydroxymethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 13). In some embodiments, the reducing agent is diisobutylaluminum hydride.
In some embodiments, the solvent is tetrahydrofuran, hexanes or a combination thereof.
[0030] In some embodiments, disclosed is a method of synthesizing 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 14):

comprising the steps of (i) contacting 3-(((3-(hydroxymethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 13) with a chlorinating agent; and (ii) isolating 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 14). In some embodiments, the solvent is selected from THF, dichloromethane,
dimethylformamide and combinations thereof. In some embodiments, the solvent is dimethylformamide.
In some embodiments, the chlorinating agent is methanesulfonyl chloride or thionyl
chloride. In some embodiments, the chlorinating agent is methanesulfonyl chloride.
In some embodiments, step (i) further comprises lithium chloride.
[0031] In some embodiments, disclosed is a method of synthesizing 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate (Intermediate 15):

comprising the steps of (i) contacting 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 14) with acetic anhydride, optionally an amine base, and a nucleophilic
catalyst in a solvent; and (ii) isolating 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate (Intermediate 15). In some embodiments, the amine base is triethylamine. In
some embodiments the nucleophilic catalyst is selected from 4-dimethylaminopyridine,
N-methylimidazole or pyridine. In some embodiments, the nucleophilic catalyst is 4-dimethylaminopyridine.
In some embodiments, the solvent is acetonitrile.
[0032] In some embodiments, disclosed is a method of synthesizing 3-(((3-((acetylthio)methyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate (Intermediate 16):

comprising the steps of (i) contacting 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate (Intermediate 15) with potassium thioacetate in a solvent; and (ii) isolating
3-(((3-((acetylthio)methyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl acetate
(Intermediate 16). In some embodiments, the solvent is acetonitrile.
[0033] In some embodiments, disclosed is a method of synthesizing (
Ra)-(+)-methyl 17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1
.1
4,7.0
11,15.0
16,21.0
20,24.0
30,15]octatriaconta-1 (37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylate

comprising the steps of: (i) contacting (
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-hydroxypropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 9) with a sulfonylating agent in the presence of an aprotic base and
a solvent to form a first solution; (ii) adding an iodide salt to the first solution;
(iii) isolating methyl 6-chloro-7-[3-(iodomethyl)-1,5-dimethyl-pyrazol-4-yl]-1-methyl-3-(3-methylsulfonyloxypropyl)indole-2-carboxylate;
(iv) contacting 3-(((3-((acetylthio)methyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate (Intermediate 16) with sodium methoxide in methanol to form a second solution;
(v) adding methyl 6-chloro-7-[3-(iodomethyl)-1,5-dimethyl-pyrazol-4-yl]-1-methyl-3-(3-methylsulfonyloxypropyl)indole-2-carboxylate
to the second solution; and (vi) isolating (
Ra)-(+)-methyl 17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1
.1
4,7.0
11,15.0
16,21.0
20,24.0
30,15]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylate.
In some embodiments, the aprotic base is diisopropylethylamine or N-methylmorpholine.
In some embodiments, the aprotic base is diisopropylethylamine. In some embodiments,
the sulfonylating agent is selected from methanesulfonyl anhydride, methanesulfonylchloride
and p-toluenesulfonic anhydride. In some embodiments, the sulfonylating agent is methanesulfonyl
anhydride. In some embodiments, the solvent is an aprotic solvent. In some embodiments,
the aprotic solvent is tetrahydrofuran. In some embodiments, the iodide salt is lithium
iodide.
[0034] In some embodiments, disclosed is a method of synthesizing Compound 1:

comprising the steps of (i) contacting (
Ra)-(+)-methyl 17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.1
4,7.0
11,15.0
16,21.0
20,24.0
30,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylate
with an ester hydrolysis reagent in a solvent and (ii) isolating (
Ra)-(+)-17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.1
4,7.0
11,15.0
16,21.0
20,24.0
30,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylic
acid. In some embodiments the ester hydrolysis reagent is a hydroxide base selected
from lithium hydroxide, sodium hydroxide and potassium hydroxide. In some embodiments
the base is sodium hydroxide. In some embodiments the solvent is selected from methanol,
ethanol, isopropanol, DMSO, water and combinations thereof.
[0035] The term "isolated" means any appropriate method for obtaining a desired compound
from the reaction mixture. The term "isolated" includes extraction, filtration, drying,
crystallization, evaporation, chromatography (
e.g., HPLC, column chromatography), metal scavenging and the like. The term "isolated"
includes methods for obtaining unpurified and purified compounds from a reaction mixture.
In some embodiments, a compound can be isolated from a reaction mixture by extraction
and the next step in the reaction can be taken forward even though the compound hasn't
been purified or removed from solvent. One of skill in the art would be able to determine
the appropriate means of isolating a desired compound from the reaction mixture.
[0036] The term "protecting group" includes hydroxyl protecting groups, for example, benzyl,
p-methoxybenzyl (PMB), tetrahydropyranyl (THP), p-methoxyphenyl (PMP) and t-butyldimethylsilyl
(TBDMS),

and the like. One of skill in the art would be able to identify appropriate hydroxyl
protecting groups without undue experimentation.
[0037] The term "protecting group precursor" includes reagents that add protecting groups
to a desired moiety. In some embodiments, the protecting group precursor is a hydroxyl
protecting group precursor, for example, benzyl chloride, 4-methoxyphenol, bromomethylpyrazole,
dihydropyran, p-methoxyphenol, chloromethylpyrazole, t-butyldimethylchlorosilane,
t-butyldimethylchlorosilane and 1-(chloromethyl)-4-methoxybenzene. A skilled artisan
would readily be able to identify the appropriate protecting group precursor without
undue experimentation.
[0038] The term "reducing agent" includes lithium aluminum hydride, sodium borohydride,
diisobutylaluminum hydride and the like.
[0039] The term "solvent" includes non-polar solvents, aprotic solvents and protic solvents.
The term "non-polar solvent" includes pentane, cyclopentane, hexane, heptane, cyclohexane,
benzene, toluene, chloroform, diethyl ether, cyclopentyl methyl ether,
tert-butyl methyl ether,
tert amyl methyl ether, dichloromethane and methyl ethyl ketone. The term "aprotic solvent"
includes tetrahydrofuran, ethyl acetate, acetone, dimethylformamide, acetonitrile,
2-methyltetrahydrofuran, 1,4-dioxane, dimethylacetamide and dimethylsulfoxide. The
term "protic solvent" includes n-butanol, isopropyl alcohol, n-propanol, ethanol,
methanol, acetic acid and water. In some embodiments, the solvent may include combinations
of any of the foregoing solvents. One of skill in the art would routinely be able
to determine the appropriate solvent or solvent combinations for a particular reaction.
[0040] The term "brominating agent" includes 1,3-dibromo-5,5-dimethylhydantoin (DBDMH) and
N-bromosuccinimide (NBS).
[0041] The term "diazotization agent" includes sodium nitrite (NaNO
2), calcium nitrite (Ca(NO
2)
2) and potassium nitrite (KNO
2).
[0042] The term "metalating agent" includes n-butyl lithium (n-BuLi).
[0043] The term "ester hydrolysis agent" includes sodium hydroxide (NaOH), potassium hydroxide
(KOH), lithium hydroxide (LiOH), sodium chloride (NaCl) and lithium iodide (Lil).
[0044] The term "base" includes potassium acetate (KOAc), potassium carbonate (K
2CO
3), sodium carbonate (Na
2CO
3), potassium phosphate (K
3PO
4), potassium hydroxide, sodium hydroxide, sodium bis(trimethylsilyl)amide (NaHMDS),
lithium bis(trimethylsilyl)amide (LiHMDS), sodium hydride (NaH), t-butyl ammonium
bisulfate, n-butyl lithium, t-butyl lithium (t-BuLi), magnesium, zinc, lithium hydroxide,
lithium diisopropyl amide (LDA), sodium amide (NaNH
2), potassium t-butoxide, pyridine, triethylamine (TEA), diisopropylethylamine (DIEA),
1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), sodium methoxide (NaOMe) and sodium ethoxide
(NaOEt). The term "base" also includes basic phase transfer catalysts, for example,
tetrabutylammonium bisulfate (Bu
4·HSO
4), benzyltrimethylammonium chloride, polyethylene glycol and its derivatives, 18-crown-6
and other crown ethers.
[0045] The term "acid" includes hydrochloric acid (HCI), sulfuric acid (H
2SO
4), p-toluenesulfonic acid (p-TsOH), methanesulfonic acid and acetic acid. In some
embodiments, the acid is concentrated.
[0046] The term "alcohol" includes methanol, ethanol, n-propanol, isopropanol, n-butanol,
isobutanol and t-butyl alcohol.
[0047] The term "reducing agent" includes lithium aluminum hydride (LAH), borane-dimethylsulfide
complex, borane-tetrahydrofuran complex, diisobutylaluminum hydride (DIBAL), lithium
borohydride (LiBH
4), sodium bis(2-methoxyethoxy)aluminum hydride (Red-Al
®) and sodium borohydride (NaBH
4).
[0048] The term "methylating agent" includes methyl iodide, dimethylsulfate and dimethyl
formamide-dimethyl acetal (DMF-DMA).
[0049] The term "acylating agent" includes acetic anhydride and acetyl chloride.
[0050] The term "nucleophilic catalyst" includes dimethylaminopyridine (DMAP), pyridine
and N-methylimidazole.
[0051] The term "amine base" includes triethylamine, pyridine and diisopropylethylamine.
[0052] The term "sulfonylating agent" includes tosic anhydride, methanesulfonyl chloride,
p-toluenesulfonyl chloride and methanesulfonyl anhydride.
[0053] The term "iodide salt" includes lithium iodide, sodium iodide and potassium iodide.
[0054] In some embodiments, the term "palladium catalyst" includes 1,1'-bis(di-
tert-butylphosphino)ferrocene palladium dichloride, [1,1'-bis(di-tert-butylphosphino)ferrocene]dichloropalladium(II)
(Pd 188, PdCl
2(dtbpf)), (R)-(-)-4,12-bis(diphenylphosphino)-[2.2]-paracyclophane (R-Phanephos),
(S)-(-)-4,12-bis(diphenylphosphino)-[2.2]-paracyclophane (S-Phanephos), (2-Dicyclohexylphosphino-2',4',6'-triisopropyl-1,1'-biphenyl)[2-(2'-amino-1,1'-biphenyl)]palladium(II)
methanesulfonate (XPhos-G3-Palladacycle, XPhos-Pd-G3), (2-Dicyclohexylphosphino-2',6'-diisopropoxy-1,1'-biphenyl)[2-(2'-amino-1,1'-biphenyl)]palladium(II)
methanesulfonate (RuPhos-G3-Palladacycle, RuPhos-Pd-G3), (2-Dicyclohexylphosphino-2',6'-diisopropoxy-1,1'-biphenyl)[2-(2'-amino-1,1'-biphenyl)]palladium(II)
methanesulfonate (RuPhos-G3-Palladacycle, RuPhos-Pd-G3), [(2-Di-cyclohexylphosphino-3,6-dimethoxy-2',4',6'-
triisopropyl-1,1'-biphenyl)-2-(2'-amino-1,1'-biphenyl)]palladium(II) methanesulfonate
(BrettPhos G3), tBuXPhos-Pd-G3, [(2-Di-tert-butylphosphino-2',4',6'-triisopropyl-1,1'-biphenyl)-2-(2'-amino-1,1'-biphenyl)]
palladium(II) methanesulfonate (tBu XPhos G3), tetrakis(triphenylphosphine)palladium(0)
and bis(di-tert-butyl(4-dimethylaminophenyl)phosphine)dichloropalladium(II)
[0055] In some embodiments, Compound 1 may be synthesized as set forth in Schemes I-VII:
- A = i) NaNO2, aq HCl; ii) methyl 2-oxocyclopentane-1-carboxylate, aq KOAc; iii) H2SO4, MeOH
- B = H2SO4, MeOH

- C = i) LiAlH4, THF; ii) NBS iii) PMBCI, KOH, Bu4NHSO4, THF
- D = i) n-BuLi, THF; ii) i-PrOBPin


- E = Pd(di-t-BPF)Cl2, K2CO3, 1,4-dioxane, H2O
- F = i) DMF-DMA, PhMe; ii) aq NaOH, MeOH
- G = (1R)-1-(2-nitrophenyl)ethanamine hydrochloride, NaOH, EtOH, H2O
- H = i) aq HCI, PhMe, THF; ii) DMF-DMA, PhMe; iii) AcCI, MeOH
- I = iBu2AlH, THF

- J = i) NaBH4, MeOH, MeTHF

- K = i) PPh3, I2, MeCN; ii) Ac2O, Et3N, DMAP

- L = K2CO3, MeOH
- M = i-Bu2AlH, THF
- N = MeSO2Cl, LiCI, DMF
- O = Ac2O, DMAP, MeCN
- P = KSAc, MeCN

- Q = i) intermediate 9, (MeSO2)2O, i-Pr2NEt; ii) Lil, MeCN; iii) in separate vessel, Intermediate 16, NaOMe, MeOH; iv) solution from iii) added to compound from ii) in
MeCN; v) addition into hot DMSO
- R = NaOH, DMSO, EtOH, H2O
Examples
[0056] Aspects of the present disclosure can be further defined by reference to the following
nonlimiting examples, which describe in detail preparation of certain compounds and
intermediates of the present disclosure and methods for using compounds of the present
disclosure. It will be apparent to those skilled in the art that many modifications,
both to materials and methods, can be practiced without departing from the scope of
the present disclosure.
[0057] Unless stated otherwise:
- (i) all syntheses were carried out at ambient temperature, i.e. in the range 17 to 25 °C and under an atmosphere of an inert gas such as nitrogen
unless otherwise stated;
- (ii) evaporations were carried out by rotary evaporation or utilizing Genevac equipment
or Biotage v10 evaporator under reduced pressure;
- (iii) silica gel chromatography purifications were performed on an automated Novasep
Hipersep® or Teledyne Isco CombiFlash® Rf or Teledyne Isco CombiFlash® Companion® system packed using Kromasil® 60-10-SIL silica (10 µm particles, 60 Å pore size) or using prepacked RediSep Rf
Gold™ Silica Columns (20-40 µm, spherical particles), GraceResolv™ Cartridges (Davisil® silica) or Silicycle cartridges (40 - 63 µm).
- (iv) chiral analytical chromatography was performed on a Waters X5 SFC-MS with UV
detection or a Waters UPC2 SFC-MS with UV and ELSD detection or an Agilent 1100 HPLC
system with UV detection.
- (v) yields, where present, are not necessarily the maximum attainable;
- (vi) in general, the structures of isolated compounds were confirmed by NMR spectroscopy;
NMR chemical shift values were measured on the delta scale, using the solvent residual
peak as the internal standard [proton magnetic resonance spectra were determined using
a Bruker Ultrashield Avance III 500 MHz spectrometer fitted with a QCI cryoprobe,
Bruker Ultrashield Avance III 400 MHz spectrometer fitted with a BBFO probe, Bruker
Avance 500 (500 MHz), Bruker Avance 400 (400 MHz), Bruker Avance 300 (300 MHz) or
Bruker DRX (300 MHz) instrument]; measurements were taken at 27°C unless otherwise
specified; the following abbreviations have been used: s, singlet; d, doublet; t,
triplet; q, quartet; m, multiplet; dd, doublet of doublets; ddd, doublet of doublet
of doublet; bs, broad signal.
- (vii) in general, isolated compounds were also characterized by mass spectroscopy
following liquid chromatography using a Waters UPLC fitted with a Waters SQ or QDa
mass spectrometer (Column temp 30 °C or 40 °C, UV = 220-300 nm or 210-400 nm or 190-400
nm, Mass Spec = ESI with positive/negative switching) at a flow rate of 1 mL/min using
a solvent system of 97% A + 3% B to 3% A + 97% B over 1.50 min (total run time with
equilibration back to starting conditions, etc., 1.70 min), where A = 0.1% formic
acid or 0.05% trifluoroacetic acid in water (for acidic work) or 0.1% ammonium hydroxide
in water (for basic work) and B = acetonitrile. For acidic analysis the column used
was a Waters Acquity HSS T3 (1.8 µm, 2.1 x 50 mm or 2.1 x 30 mm), or a Waters Acquity
BEH C18 (1.7 µm, 2.1 x 50 mm or 2.1 x 30 mm), for mid-pH analysis, a Waters Acquity
BEH C18 (1.7 µm, 2.1 x 50 mm) column was used and for basic analysis the column used
was a Waters Acquity BEH C18 (1.7 µm, 2.1 x 50 mm or 2.1 x 30 mm). Alternatively,
a solvent gradient of 2 to 98% B over 1.5 min (total run time with equilibration back
to starting conditions 2 min) was used, where A = 0.1% formic acid in water and B
= 0.1% formic acid in acetonitrile (for acidic work) or A = 0.1% ammonium hydroxide
in water and B = acetonitrile (for basic work). Alternatively a solvent gradient of
92% A + 5% B + 3% C to 7% A + 90% B + 3% C or 90% A + 5% B + 5% D to 5% A + 90% B
+ 5% D over 3.6 min (total cycle time with equilibration back to starting conditions,
etc., 5.1 min) was used, where A = water, B = acetonitrile, C = 1% TFA in water and
D = 250 mM ammonium acetate in water; The reported molecular ion corresponds to the
[M+H]+ unless otherwise specified; for molecules with multiple isotopic patterns (Br,
Cl, etc.) the reported value is the one obtained with highest intensity unless otherwise
specified.
- (viii) in general, the wt% purity of compounds were determined against a suitable
internal reference standard (for example 1,2,4,5-tetrachloro-3-nitrobenzene, maleic
acid or benzyl benzoate) by proton NMR under quantitative conditions.
- (ix) large scale reactions were carried out in reactors fitted with heat transfer
jackets and serviced with appropriate ancillary equipment; and
- (x) the following abbreviations have been used:
- MeCN
- acetonitrile
- aq.
- aqueous
- conc.
- concentrated
- DCM
- dichloromethane
- di-t-BPF
- 1,1'-bis(di-tert-butylphosphino)ferrocene
- DIBAH
- diisobutylaluminium hydride
- DMAP
- 4-dimethylaminopyridine
- DMF
- N,N-dimethylformamide
- DMF-DMA
- N,N-dimethylformamide dimethyl acetal
- DMSO
- dimethylsulfoxide
- e.e.
- enantiomeric excess
- ES
- electrospray mode
- HPLC
- high performance liquid chromatography
- IPA
- Isopropyl alcohol
- LAH
- lithium aluminum hydride
- MS
- mass spectrometry
- MTBE
- methyl tert-butyl ether
- NBS
- N-bromosuccinimide
- NMR
- nuclear magnetic resonance
- PMB
- 4-methoxybenzyl
- TFA
- trifluoroacetic acid
- THF
- tetrahydrofuran
- UPLC
- ultra-high performance liquid chromatography
- wt%
- weight percent
Intermediate 1: (E/Z)-dimethyl 2-(2-(2-bromo-3-chlorophenyl)hydrazono)hexanedioate
[0058]

[0059] A mixture of 2-bromo-3-chloroaniline (2.00 kg, 9.69 mol), hydrochloric acid (36 wt%,
4.85 L, 58.1 mol) and water (5 L) was stirred for 1 h. The resulting solution was
cooled to 0 °C, then a solution of NaNO
2 (702 g, 10.2 mol) in water (2.4 L) was gradually added over 1 h at 0-5°C. After stirring
for 1 h, methyl 2-oxocyclopentane-1-carboxylate (1.38 kg, 9.69 mol) was gradually
added at 0-5°C. Then a solution of KOAc (13.3 kg, 136 mol) in water (20 L) was added
gradually. The resulting solution was allowed to react for an additional 45 min at
0-5 °C. The solution was then extracted three times with DCM (12 L per extraction).
The combined organic extracts were washed with brine (10 L) and then charged to another
reactor containing a solution of conc. sulfuric acid (4.75 kg, 48.5 mol) in MeOH (3.1
kg). The resulting solution was allowed to react for 3 h at 10-20 °C. The solution
was concentrated to about 8 L and then two cycles of adding MeOH (18 L per cycle)
and distilling off solvent (18 L per cycle) under reduced pressure were completed.
The resulting slurry was cooled to 0-10 °C, stirred for 1 h and then filtered. The
solid was washed with MeOH (2 x 2 L) and then dried in an oven under reduced pressure
to give (E/Z)-dimethyl 2-(2-(2-bromo-3-chlorophenyl)hydrazono)hexanedioate,
(Intermediate 1, 3.3 kg, 94 wt%, 82%); m/z (ES+), [M+H]
+ = 391.
1H NMR (500 MHz, CHLOROFORM-d, 27°C) δ 1.98 (m, 2H), 2.41 (t, 2H), 2.59 (t, 2H), 3.66
(s, 3H), 3.87 (s, 3H), 7.05 (dd, 1H), 7.17 - 7.23 (m, 1H), 7.49 (dd, 1H), 12.48 (bs,
1H).
Intermediate 2: Methyl 7-bromo-6-chloro-3-(3-methoxy-3-oxopropyl)-1H-indole-2-carboxylate
[0060]

[0061] A solution of (E/Z)-dimethyl 2-(2-(2-bromo-3-chlorophenyl)hydrazono)hexanedioate
(Intermediate 1, 3.3 kg, 93.7 wt%, 7.9 mol) in conc. sulfuric acid (8.4 kg, 84 mol) and MeOH (26
L) was stirred for 72 h at 80 °C. The reaction mixture was cooled to 0 °C. The resulting
solids were collected by filtration, washed with MeOH (2 L) and then dried in a vacuum
oven at 40 °C to give 2.5 kg of solid. The solid was combined with another 3 batches
prepared in the same way at approximately the same scale, to give a total of 11.9
kg of unpurified product, derived from 13.6 kg (93.7 wt%, 32.5 mol) of the starting
material.
[0062] Half of the unpurified product was added into stirring MeOH (36 L). The mixture was
heated to 65 °C and the resulting solution was held at 65 °C for 1 h before cooling
to 0 °C. The resulting slurry was stirred at 0 °C for 1 h then filtered. The filter
cake was washed with MeOH (3 L) and dried in a vacuum oven at 40 °C. This was repeated
with the remaining material and the materials were combined to give 9.7 kg of solid.
3.7 kg of this was mixed with active charcoal (0.74 kg), DCM (3.4 L) and MeOH (34
L) and the slurry was heated to 65-70 °C for 1 h. The slurry was cooled to 55°C and
filtered. The filter cake was washed with DCM (10 L) and then the combined filtrates
were concentrated to about 8 L by distilling off solvent under vacuum. Two cycles
of adding MeOH (10 L) and distilling off solvent (10 L) under vacuum were completed
and then the resulting slurry was combined with other similarly prepared slurries
from the remaining solid. The combined slurry was cooled to 0 °C and stirred for 1
h before filtering. The filter cake was washed with MeOH (3 L) and dried in a 40 °C
vacuum oven to yield methyl 7-bromo-6-chloro-3-(3-methoxy-3-oxopropyl)-1H-indole-2-carboxylate
(Intermediate 2, 9.4 kg, 97.7 wt%, 76%); m/z (ES+), [M+H]
+ = 374.
1H NMR (500 MHz, DMSO-
d6, 27°C), δ 2.60 (t, 2H), 3.26 (t, 2H), 3.53 (s, 3H), 3.89 (s, 3H), 7.28 (d, 1H), 7.73
(d, 1H), 11.62 (bs, 1H).
Intermediate 3: 4-Bromo-3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazole
[0063]

[0064] LAH (1.05 M in THF, 15.0 kg, 17.4 mol) was gradually added to a stirring solution
of ethyl 1,5-dimethyl-1H-pyrazole-3-carboxylate (5.33 kg, 31.7 mol) in THF (10.7 L)
over 1.5 h at 4-23 °C, followed by THF (1.0 L). After 30 min, the solution was cooled
to 15 °C, then, while continuing to cool, a solution of water (0.66 L, 37 mol) in
THF (1.9 L) was gradually added over 20 min. Aq. NaOH (15 wt%, 0.66 L, 2.8 mol) was
then added over a few min, followed by water (2.0 L). The resulting slurry was stirred
for 20 min at 4-11 °C then filtered under suction. The collected solids were washed
four times with THF (10.7 L per wash) to give (1,5-dimethyl-1H-pyrazol-3-yl)methanol
as a solution in the collected filtrates.
[0065] The reactor was rinsed with 1M HCl, water and THF before charging the filtrates back
in. Three portions of NBS (1.82 kg per portion, 99.4 wt%, 30.6 mol in total) were
charged to the solution, stirring for 7-8 min at 19-27 °C between portions and then
for 45 min afterwards at 21-28 °C. A solution prepared from Na
2SO
3 (0.81 kg, 99 wt%, 6.4 mol), NaOH (50 wt% in water, 4.6 kg, 57 mol) and water (16
L) was then added and the resulting mixture stirred for 10 min at 25-26 °C. The layers
were separated and the lower layer was washed with THF (16 L). The upper layers were
combined and evaporated to dryness to give (4-bromo-1,5-dimethyl-1H-pyrazol-3-yl)methanol
as a solid.
[0066] This unpurified (4-bromo-1,5-dimethyl-1H-pyrazol-3-yl)methanol was re-dissolved in
THF (18.8 L) and heated with stirring to 50 °C, then tetrabutylammonium bisulfate
(0.32 kg, 0.95 mol), 1-(chloromethyl)-4-methoxybenzene (5.4 L, 97.6 wt%, 40 mol) and
a THF (2.8 L) line wash were added. KOH (45 wt% in water, 13.7 L, 159 mol) was added
gradually over 45 min to the vigorously stirring mixture at 47-57 °C, before continuing
to stir for 4 h at 55-50 °C. The mixture was then cooled to 20 °C and held with stirring
for 63 h. The mixture was re-heated to 50 °C, water (18.7 L) was added and the mixture
was stirred for 10 min. The lower layer was removed and the solution remaining in
the reactor was cooled to 20 °C. 4-Bromo-3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazole
(0.01 kg, 0.03 mol) was added as crystallization seed followed by heptane (32 L),
gradually over 45 min, during which time crystallization started. The slurry was held
with stirring for 30 min at 20 °C before gradually charging more heptane (22 L) over
45 min and cooling to 0°C. After 17 h, more heptane (11 L) was added. After a further
1 h at 0°C, the slurry was filtered under suction. The filter cake was washed with
a cooled (0 °C) mixture of heptane (17 L) and THF (4.3 L) and then dried in a 40 °C
vacuum oven to give 4-bromo-3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazole
(
Intermediate 3, 8.78 kg, 96 wt%, 82%); m/z (ES+), [M+H]
+ = 325.
1H NMR (500 MHz, DMSO-
d6, 27 °C) δ 2.22 (s, 3H), 3.74 (s, 3H), 3.75 (s, 3H), 4.32 (s, 2H), 4.39 (s, 2H), 6.87
- 6.93 (m, 2H), 7.22 - 7.27 (m, 2H).
Intermediate 4: 3-(((4-Methoxybenzyl)oxy)methyl)-1,5-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole
[0067]

[0068] Butyllithium (15 wt% in hexane, 7.27 kg, 17.3 mol) was gradually added to a stirred
slurry of 4-bromo-3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazole
(Intermediate 3, 5.27 kg, 96 wt%, 15.6 mol) in THF (43 L) at -73 °C to -66 °C over 1.5 h. The resulting
solution was agitated for 1.7 h at -77 °C to -66 °C, then 2-isopropoxy-4,4,5,5-tetramethyl-1,3,2-dioxaborolane
(3.4 L, 16 mol), followed by a THF (3.0 L) line wash, was added over 15 min. The solution
was agitated for 1.5 h at -77 °C to -63 °C, then a solution of acetic acid (0.89 L,
16 mol) in toluene (25.3 L) was gradually added over 15 min at -77 °C to -58 °C. The
mixture was then warmed to 20 °C before heating and distilling off solvent (48 L)
at 67-82 °C (atmospheric pressure). The mixture was cooled to 65 °C, water (25.5 L)
was added and the mixture was stirred for 10 min. The lower layer was removed and
then more solvent (25.4 L) was distilled off at 72-119 °C (atmospheric pressure; final
vapor temperature 108°C). The resulting solution was cooled to 40 °C and diluted with
heptane (50.6 L) over 10 min, during which time the mixture was cooled to 21 °C and
spontaneous crystallization began. 3-(((4-Methoxybenzyl)oxy)methyl)-1,5-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole
(29 g) was then added as seed nevertheless. The slurry was agitated at approximately
21 °C for 0.6 h, cooled to approximately -5 °C over 1.5 h, then held overnight (18
h) at that temperature. The slurry was filtered under suction and then the filter
cake was washed with cold (~0 °C) heptane before drying in a 40 °C vacuum oven to
give 3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole
(Intermediate 4, 4.50 kg, 99 wt%, 77%); m/z (ES+), [M+H]
+ = 373.
1H NMR (500 MHz, DMSO-
d6, 27°C) δ 1.23 (s, 12H), 2.34 (s, 3H), 3.68 (s, 3H), 3.73 (s, 3H), 4.40 (s, 2H), 4.42
(s, 2H), 6.85 - 6.91 (m, 2H), 7.20 - 7.25 (m, 2H).
Intermediate 5: (±)-Methyl 6-chloro-3-(3-methoxy-3-oxopropyl)-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1H-indole-2-carboxylate
[0069]

[0070] 3-(((4-Methoxybenzyl)oxy)methyl)-1,5-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole
(Intermediate 4, 3.30 kg, 99 wt%, 8.78 mol), methyl 7-bromo-6-chloro-3-(3-methoxy-3-oxopropyl)-1H-indole-2-carboxylate
(Intermediate 2, 3.20 kg, 97.7 wt%, 8.35 mol), K
2CO
3 (1.60 kg, 11.6 mol) and 1,1'-bis(di-
tert-butylphosphino)ferrocene palladium dichloride (0.132 kg, 0.203 mol) were charged
to a 100 L reactor under nitrogen. The reactor headspace was then evacuated and re-filled
with nitrogen three times. 1,4-Dioxane (26.3 L) and water (3.3 L) were sparged with
nitrogen under reduced pressure for 5-10 min before they were sequentially added and
the resulting slurry was heated at 80 °C with stirring for 5 h. The reaction mixture
was cooled to 20 °C and held overnight (16 h) before diluting with MTBE (33 L) and
water (33 L).
N-Acetyl cysteine (0.165 kg, 1.01 mol) was added and the mixture was stirred for 15
min. The lower layer, once settled, was removed. The upper layer was then washed sequentially
with hydrochloric acid (37 wt%, 2.7 L, 33 mol) in water (30 L) and then water (32
L) to give a MTBE solution of (±)-methyl 6-chloro-3-(3-methoxy-3-oxopropyl)-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1H-indole-2-carboxylate
(Intermediate 5, 22.9 kg, 19.1 wt%, 97%).
Intermediate 6: (±)-3-(2-Carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid
[0071]

[0072] A MTBE solution of (±)-methyl 6-chloro-3-(3-methoxy-3-oxopropyl)-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1H-indole-2-carboxylate
(Intermediate 5, 22.94 kg, 19.1 wt%, 8.12 mol) was agitated with a mercaptopropyl functionalized
silica-based palladium scavenger (Quadrasil
™ MP, 1.1 kg) and toluene (44 L) at 20 °C for 1 h. The slurry was filtered and the
waste solids were washed with toluene (13 L). The combined filtrates were concentrated
by distilling off solvent (44 L) at 75-107 °C. DMF-DMA (5.5 L, 41 mol) was then added
at 91 °C. The solution was heated to reflux, held for 22 h at approximately 108 °C,
during which four portions of solvent (2, 4.5, 4.5 and 4.4 L) were distilled off (immediately
after reaching reflux, then after 2.0, 3.4 and 4.8 h), and then cooled to 55 °C. NaCl
(2.2 kg) solution in water (20 L) was charged, then the resulting biphasic mixture
was removed from the vessel and filtered back in through a 5 µm in-line filter. The
screened mixture was agitated at 50-53 °C for 10 min and then, once settled, the lower
layer was removed. MeOH (22 L) and a solution of aq. NaOH (3.3 kg, 50 wt%, 41 mol)
in water (18 L) were then added and the resulting biphasic mixture was agitated at
55 °C for 3 h. After settling, the layers were removed to separate containers. The
lower layer (containing the product) was then returned to the reactor and agitated
at 55°C. Acetic acid (4.6 kg, 77 mol) solution in water (4.4 L) was then gradually
added over 25 min, followed by a 3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid (0.02 kg, 0.04 mol) crystallization seed. The mixture was held at 49-56 °C for
2 h, cooled to 20 °C over 2 h and then held at 20 °C for 13 h. The resulting slurry
was filtered under suction. Water (11 L) was used to rinse the reactor and filter
cake, which was then partly dried on the filter by continuing suction for 6 h at ambient
temperature and completely dried in a 40 °C vacuum oven to give (±)-3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid
(Intermediate 6, 3.78 kg, 99.0 wt%, 86%); m/z (ES+), [M+H]
+ = 526.
1H NMR (500 MHz, DMSO-
d6, 27 °C) δ 2.01 (s, 3H), 2.50 - 2.57 (m, 2H), 3.18 - 3.29 (m, 2H), 3.40 (s, 3H), 3.68
(s, 3H), 3.82 (s, 3H), 4.08 (d, 1H), 4.14 (d, 1H), 4.19 (d, 1H), 4.21 (d, 1H), 6.64
- 6.69 (m, 2H), 6.69-6.74 (m, 2H), 7.25 (d, 1H), 7.75 (d, 1H), 12.71 (bs, 1H).
Intermediate 7: (Ra)-3-(2-Carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid - (1R)-1-(2-nitrophenyl)ethanamine (1:1 salt)
[0073]

[0074] NaOH (50 wt% in water, 0.95 L, 18 mol), followed by an ethanol (1.8 L) rinse, was
added to a stirring slurry of (±)-3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid
(Intermediate 6, 9.38 kg, 97.5 wt%, 17.4 mol) and (1
R)-1-(2-nitrophenyl)ethanamine hydrochloride (2.48 kg, 91 wt%, 11.1 mol) in water (7.4
kg) and ethanol (64 L) at 20 °C. While heating the resulting solution to 78 °C, spontaneous
crystallization of the product started (at or below 41 °C). After heating to 78 °C,
three cycles of cooling the slurry to 63 °C over 1.3 h, heating back to 78 °C over
0.6 h and holding for 10 min were completed. The slurry was then cooled, to 63 °C
over 1.2 h, then to 20 °C over 1.6 h, before holding at 20 °C overnight and then filtering
under suction. Ethanol (18 L) was used to rinse the reactor and filter cake. Once
well de-liquored, the filter cake was returned to the reactor. (This solid typically
has approximately 92% e.e. of the desired di-acid). Water (7.3 L) and ethanol (66
L) were charged and the reactor contents were heated with stirring to 78 °C. The resulting
slurry was cooled to 63 °C over 1.3 h, then to 20 °C over 1.6 h, before holding at
20 °C overnight and then filtering under suction. Ethanol (18 L) was used to rinse
the reactor and filter cake. The filter cake was dried in a 40 °C vacuum oven to give
(R
a)-3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid - (1
R)-1-(2-nitrophenyl)ethanamine (1:1 salt)
(Intermediate 7, 5.23 kg, 97.5 wt%, 99.0% e.e., 7.36 mol) in 42.3% yield; m/z (ES+), [M+H]
+ = 526 (acid), 167 (amine).
1H NMR (500 MHz, DMSO-
d6, 27 °C) δ 1.49 (d, 3H), 2.00 (s, 3H), 2.61 (t, 2H), 3.10 - 3.22 (m, 2H), 3.38 (s,
3H), 3.68 (s, 3H), 4.11 (d, 1H), 4.14 (d, 1H), 4.17 (d, 1H), 4.22 (d, 1H), 4.66 (q,
1H), 6.67 - 6.72 (m, 2H), 6.75 - 6.80 (m, 2H), 7.18 (d, 1H), 7.54 - 7.60 (m, 1H),
7.63 (d, 1H), 7.76 - 7.82 (m, 1H), 7.90 - 7.94 (m, 1H), 7.93 - 7.97 (m, 1H), 9.16
(bs, 3H).
[0075] Chiral purity analysis HPLC method details: column = Chiralpak AD-H (4.6 x 250 mm,
5 µm); temperature = 25°C; mobile phase = 70 : 30 hexane : ethanol by volume containing
0.2% TFA, flowing at 1.0 mL/min; detection by UV at 254 nm; inj. volume = 10 µL (this
may be adjusted to achieve a suitable limit of detection); retention times 4.8 and
13.7 min for the
Ra and
Sa enantiomers respectively.
Intermediate 8: (Ra)-Methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-methoxy-3-oxopropyl)-1-methyl-1H-indole-2-carboxylate
[0076]

[0077] Hydrochloric acid (37 wt%, 0.77 L, 9.2 mol) was added to a stirring slurry of (
Ra)-3-(2-carboxyethyl)-6-chloro-7-(3-(((4-methoxybenzyl)oxy)methyl)-1,5-dimethyl-1H-pyrazol-4-yl)-1-methyl-1H-indole-2-carboxylic
acid - (1
R)-1-(2-nitrophenyl)ethanamine (1:1 salt)
(Intermediate 7, 5.23 kg, 97.5 wt%, 7.36 mol) in THF (20.5 L) and water (20.5 L) at 45 °C. After
5 min, toluene (41 L) was added and the mixture was stirred for 10 min. The lower
layer was removed and the upper layer was diluted with toluene (20.5 L) and concentrated
by distilling off solvent (60 L) under reduced pressure (590 mbar) at 48-92 °C. DMF-DMA
(3.45 L, 25.8 mol) was added to the resulting mixture at 90 °C, giving a solution,
which was heated to reflux, held at reflux (98 °C) for 8 h, then cooled to and held
at 49 °C for 16 h. DMF-DMA (1.0 L, 7.5 mol) was added and the mixture was refluxed
at 100 °C for an additional 3.6 h before cooling to 50 °C. Water (12.7 L) was added
and the mixture was stirred for 15 min. The lower layer was removed. MeOH (20 L) was
added to the upper layer, followed by a 10 min gradual addition of acetyl chloride
(2.15 L, 29.9 mol) to the stirred solution. The solution was heated at 60 °C for 21
h then transferred to containers. Toluene (10 L) and K
2COs (2.56 kg, 18.4 mol) in water (20.5L) were charged to the empty reactor and the
mixture was heated to 55 °C. The completed reaction solution was then gradually added
back into the reactor over 20 min, followed by a toluene (10 L) rinse. Stirring was
stopped after a further 10 min at 55 °C and once settled, the lower layer was removed.
The upper layer was concentrated by distilling off solvent (21 L) under reduced pressure
(540 mbar) at 55-93 °C. The solution was diluted with heptane (10 L) at 50 °C and
then seeded with (
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-methoxy-3-oxopropyl)-1-methyl-1H-indole-2-carboxylate
(16 g, 0.037 mol). After allowing the crystallisation to establish for 1 h at 50 °C,
more heptane (20 L) was gradually added over 1 h. The slurry was then cooled to 20
°C over 2 h and stirred for 65 h before it was filtered under suction. The filter
cake was washed with heptane (10 L) and then dried in a 40 °C vacuum oven to give
(
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-methoxy-3-oxopropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 8, 2.85 kg, 98 wt%, 87%); m/z (ES+), [M+H]
+ = 434.
1H NMR (500 MHz, DMSO-
d6, 27°C) δ 1.95 (s, 3H), 2.57 - 2.64 (m, 2H), 3.17 - 3.33 (m, 2H), 3.44 (s, 3H), 3.57
(s, 3H), 3.79 (s, 3H), 3.84 (s, 3H), 4.13 (dd, 1H), 4.23 (dd, 1H), 4.72 (dd, 1H),
7.26 (d, 1H), 7.72 (d, 1H).
Intermediate 9: (Ra)-Methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-hydroxypropyl)-1-methyl-1H-indole-2-carboxylate
[0078]

[0079] (
Ra)-Methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-methoxy-3-xopropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 8, 2.25 kg, 98 wt%, 5.08 mol) was dissolved in THF (13.3 L) and the resulting solution
was cooled to -45 °C. DIBAH (20.3 wt% in hexane; 11.0 kg, 15.7 mol) was then added
over 1.1 h at or below -41 °C. The reaction mixture was held at approximately -45
°C for a further 4.4 h, during which time three further portions of DIBAH (20.3 wt%
in hexane; 1.32, 0.25 and 0.07 kg; 1.88, 0.36 and 0.10 mol) were added after 1.4,
2.8 and 3.7 h. IPA (2.2 L, 29 mol) was then added to the reaction mixture, before
heating to 20 °C over 2 h and holding at that temperature for 2.5 h.
[0080] Meanwhile, in another reactor, sodium potassium tartrate tetrahydrate (6.47 kg, 22.9
mol) and water (22 L) were charged. After a few minutes of agitation at 20 °C, a solution
was formed and then isopropyl acetate (22 L) was added. The resulting biphasic mixture
was heated to 50 °C.
[0081] The ester reduction reaction mixture was transferred to the vigorously stirred aqueous
tartrate and isopropyl acetate mixture at 50 °C over 20 min, followed by a THF (1.5
L) rinse. Vigorous stirring at 50 °C was continued for 1.9 h. The lower layer was
removed. The upper layer was washed with water (4.45 L), then removed and filtered
back into the reactor through a 5 µm in-line filter, followed by an isopropyl acetate
(1.1 L) line wash. The solution was concentrated by distilling off solvent (32 L)
at 58-74 °C (atmospheric pressure) then cooled to 20 °C. The solution was transferred
to a smaller vessel, followed by an isopropyl acetate (1.1 L) line wash, and then
further concentrated (to approximately 9 L) by distilling off more solvent (15 L)
at 73-85 °C (atmospheric pressure). The stirring solution was then cooled to 70 °C,
seeded with (
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-hydroxypropyl)-1-methyl-1H-indole-2-carboxylate
(2 g, 97.9 wt%, 5 mmol), cooled to 20 °C over 1 h and held at 20 °C for 24 h. The
resulting slurry was filtered under suction. The filter cake was washed with isopropyl
acetate (2.2 L) and then dried in a 40 °C vacuum oven to give (
Ra)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-hydroxypropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 9, 1.76 kg, 98.0 wt%, 84%); m/z (ES+), [M+H]
+ = 406.
1H NMR (500 MHz, DMSO-
d6, 27 °C) δ 1.68 - 1.77 (m, 2H), 1.96 (s, 3H), 2.93 - 3.05 (m, 2H), 3.43 (s, 3H), 3.42
- 3.48 (m, 2H), 3.80 (s, 3H), 3.84 (s, 3H), 4.14 (dd, 1H), 4.23 (dd, 1H), 4.48 (t,
1H), 4.71 (dd, 1H), 7.25 (d, 1H), 7.71 (d, 1H).
Intermediate 10: Methyl 5-(chloromethyl)-1-methyl-1H-pyrazole-3-carboxylate
[0082]

[0083] Sodium carbonate (2.14 kg, 20.2 mol) was added to a stirring solution of dimethyl
1-methyl-1H-pyrazole-3,5-dicarboxylate (7.95 kg, 40.1 mol) in MeOH (80 L) at 20±5
°C. The slurry was stirred for 0.5 h and then filtered. The filter cake was washed
with 2-methylTHF (16 L) and then the filtrates were returned to the reactor, followed
by 2-methylTHF (24 L). The solution was cooled to 15±3 °C and sodium borohydride (3.05
kg, 80.7 mol) was charged in ten portions at 15±3 °C. The mixture was stirred for
2 h at 18±3 °C after adding NaBH
4. It was then quenched by gradually charging acetone (16.4 kg, 283 mol) at 18±3 °C,
then stirred for 1 h at 20±5 °C. Aq. HCI (37 wt%, ~8.6 Kg, 87 mol) was then slowly
added, keeping the temperature below 30 °C, to adjust the pH to 2-3, then the mixture
was stirred for 1 h. Saturated aq. Na
2CO
3 (~4L) was then slowly added to adjust the pH to 5-6, then the mixture was stirred
for 3 h. The mixture was filtered and the filter cake was washed with DCM (16 L).
The filtrates were concentrated to approximately 20 L by distillation under reduced
pressure, not heating above 40°C, then diluted with DCM (40 L) and concentrated again
by distilling off solvent (approx. 40 L) under reduced pressure. DCM (80 L) and purified
water (32 L) were charged and the resulting mixture was stirred for at least 10 min.
The lower (organic) phase was collected and the upper (aqueous) phase was extracted
four times with more DCM (40 L per portion). The combined organic phases were concentrated
to approximately 20 L by vacuum distillation below 40 °C. DCM (80 L) was added and
the solution was concentrated again by distilling off solvent (approx. 40 L). The
resulting methyl 5-(hydroxymethyl)-1-methyl-1H-pyrazole-3-carboxylate solution was
then diluted with DCM (80 L) and cooled to 10±5 °C, whereupon thionyl chloride (4.80
kg, 40.4 mol) was gradually added while keeping the temperature below 15 °C. The mixture
was then stirred for 1 h at 20±5 °C. The mixture was concentrated to not more than
20 L by vacuum distillation below 40 °C, then DCM (64 L) and purified water (80 L)
were added. After phase separation, the lower (organic) phase was washed twice with
aq. Na
2CO
3 (9 wt%, 80 L per portion) and then with purified water (80 L). The washed organic
phase was concentrated to approximately 14 L by vacuum distillation below 40 °C. Two
cycles of slowly adding heptane (40 L) and then vacuum distilling to approximately
24 L at below 45 °C were then completed. More heptane (40 L) was slowly added and
the resulting slurry was stirred at 20±5 °C for at least 0.5 h before filtering. The
filter cake was washed with heptane (8.0 L) and then dried in a 45 °C vacuum oven
to give methyl 5-(chloromethyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 10, 4.87 kg, 64%); m/z (ES+), [M+H]
+ = 189.
1H NMR (500 MHz, CDCl
3, 27 °C) δ 3.91 (s, 3H), 3.99 (s, 3H), 4.59 (s, 2H), 6.82 (s, 1H).
Intermediate 11: 3-(Acetylthio)naphthalen-1-yl acetate
[0084]

[0085] A stirring mixture of MeCN (102 L), sodium 4-hydroxynaphthalene-2-sulfonate (17.00
kg, 69.05 mol), triphenylphosphine (65.1 kg, 248 mol) and iodine (14.0 kg, 55.2 mol)
was heated at 80±5 °C for 6 h. The mixture was cooled and stirred at 0±5 °C for at
least 2 h. The waste solids were filtered off to give the crude 3-mercaptonaphthalen-1-ol
dissolved in the filtrates (also containing a large quantity of triphenylphosphine
oxide), which were recharged to the reactor followed by DMAP (0.84 kg, 6.9 mol). Keeping
the temperature below 25 °C, triethylamine (21.0 kg, 207 mol) and then acetic anhydride
(17.6 kg, 173 mol) were gradually added. The mixture was stirred for 2 h at 15-20
°C then distilled under reduced pressure to less than 85 L, not heating above 45 °C.
DCM (85 L) was added and then the mixture was distilled under reduced pressure to
less than 85 L, not heating above 40 °C. More DCM (170 L) was added and then the mixture
was washed with water (170 L), followed by aq. NaCl (17 wt%, 170 L). The lower organic
phase was distilled under reduced pressure to less than 51 L, not heating above 40°C.
Then three cycles of diluting the solution with MeOH (85 L) and distilling under reduced
pressure to less than 51 L at below 40 °C were completed to give a methanolic solution
of crude 3-(acetylthio)naphthalen-1-yl acetate
(Intermediate 11, 40.9 kg, 31.3 wt%, 49.2 mol) in 71% yield. The solution, which also contains a large
quantity of triphenylphosphine oxide, was used directly in the preparation of
Intermediate 12.
Intermediate 12: Methyl 5-(((4-hydroxynaphthalen-2-yl)thio)methyl)-1-methyl-1H-pyrazole-3-carboxylate
[0086]

[0087] 3-(Acetylthio)naphthalen-1-yl acetate
(Intermediate 11, 40.9 kg, 31.3 wt% in methanol, 49.2 mol), methanol (64 L) and K
2CO
3 (13.6 kg, 98.4 mol) were stirred at 15-20 °C. Methyl 5-(chloromethyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 10, 7.40 kg, 39.2 mol) was added portion-wise while keeping the temperature below 25
°C. The slurry was then stirred for 2 h at 20-25 °C. In response to HPLC analysis,
four further portions of methyl 5-(chloromethyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 10, 0.46 kg, 2.4 mol per portion) were charged, stirring for 1 h at 20-25 °C after each
portion. Purified water (109 L) was gradually added at 15-20 °C, the resulting mixture
was stirred for at least 2 h, then allowed to settle for at least 3 h. The liquors
were removed via tubing, leaving the settled sticky solids in the reactor, to which
ethanol (25.5 L) was then added. The mixture was stirred for at least 1 h at 15±5
°C before filtering the slurry obtained. The filter cake was washed with ethanol (6.4
L) then dried in a 45±5 °C vacuum oven to give methyl 5-(((4-hydroxynaphthalen-2-yl)thio)methyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 12, 13.05 kg, 99.3 wt%, 81%); m/z (ES+), [M+H]
+ = 329.
1H NMR (500 MHz, DMSO, 27 °C) δ 3.72 (s, 3H), 3.90 (s, 3H), 4.39 (s, 2H), 6.63 (s,
1H), 6.79 (d, 1H), 7.28 - 7.32 (m, 1H), 7.38 (ddd, 1H), 7.45 (ddd, 1H), 7.72 (d, 1H),
8.07 (d, 1H), 10.55 (bs, 1H).
Intermediate 13: 3-(((3-(Hydroxymethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
[0088]

[0089] Methyl 5-(((4-hydroxynaphthalen-2-yl)thio)methyl)-1-methyl-1H-pyrazole-3-carboxylate
(Intermediate 12, 12.7 kg, 99.3 wt%, 38.4 mol) was dissolved in THF (254 L) at 30±5 °C and then the
solution cooled to 15±5 °C. DIBAH (1 M in hexane, 155 L, 155 mol) was slowly added
while keeping the temperature at 15±5 °C. The mixture was then stirred for 0.5 h at
20±5 °C, analyzed by HPLC, and then transferred gradually into aqueous hydrochloric
acid (4 M, 114 L, 456 mol) at 5-20 °C. The biphasic mixture was vacuum distilled at
below 40 °C to not more than approximately 120 L. The resulting slurry was cooled
to 15±5 °C, then filtered. The filter cake was washed with purified water (25 L) and
then recharged to the reactor, together with DCM (57 L) and THF (6.4 L). After stirring
the mixture for at least 10 h at 20±5 °C, it was filtered. The filter cake was washed
with DCM (25 L) and then dried in a vacuum oven at 45±5 °C to give 3-(((3-(hydroxymethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 13, 10.45 kg, 95.5 wt%, 87%); m/z (ES+), [M+H]
+ = 301.
1H NMR (500 MHz, DMSO-
d6, 27 °C) δ 3.77 (s, 3H), 4.28 (s, 2H), 4.37 (s, 2H), 4.87 (bs, 1H), 6.14 (s, 1H),
6.81 (d, 1H), 7.35 (d, 1H), 7.39 (ddd, 1H), 7.47 (ddd, 1H), 7.72 - 7.75 (m, 1H), 8.03
- 8.06 (m, 1H), 10.34 (s, 1H).
Intermediate 14: 3-(((3-(Chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
[0090]

[0091] Methanesulfonyl chloride (6.28 kg, 54.8 mol) was gradually added to a stirring mixture
of 3-(((3-(hydroxymethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 13, 10.30 kg, 95.5 wt%, 32.7 mol), anhydrous lithium chloride (2.91 kg, 68.6 mol) and
DMF (51.5 L) while keeping the temperature below 10 °C. The mixture was stirred for
2 h at 15-20 °C. EtOAc (155 L) was then added, followed by purified water (155 L)
and the mixture was mixed well. The lower layer was removed and the upper layer was
washed twice with aq. NaCl (17 wt%; 155 L per portion). The upper layer was then vacuum
distilled to less than 50 L at below 35 °C. Heptane (155 L) was then slowly added
at 30±5 °C before cooling the mixture to 0-5 °C. After stirring the slurry for at
least 1 h, it was filtered. The filter cake was washed with heptane (10.3 L) and then
dried in a 30-35 °C vacuum oven to give 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 14, 9.72 kg, 95.3 wt%, 89%); m/z (ES+), [M+H]
+ = 319.
1H NMR (500 MHz, CDCl
3, 27 °C) δ 3.80 (s, 3H), 4.07 (s, 2H), 4.50 (s, 2H), 6.11 (s, 1H), 6.70 (d, 1H), 7.38
- 7.42 (m, 1H), 7.45 - 7.52 (m, 2H), 7.52 (bs, 1H), 7.68 - 7.74 (m, 1H), 8.16 - 8.20
(m, 1H).
Intermediate 15: 3-(((3-(Chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl acetate
[0092]

[0093] Acetic anhydride (3.65 kg, 35.8 mol) was gradually charged to a stirring mixture
of 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-ol
(Intermediate 14, 9.51 kg, 95.3 wt%, 28.4 mol), DMAP (360 g, 2.95 mol) and MeCN (95 L) while keeping
the temperature below 25 °C. The mixture was stirred for 2 h at 15-20 °C. EtOAc (95
L) was then added, followed by aq. NaCl (10 wt%, 95 L). After thorough mixing, the
lower layer was removed. The upper layer was washed with two further portions of aq.
NaCl (10 wt%, 95 L per portion) and then three cycles of vacuum distilling at below
40 °C to less than 29 L and then adding MTBE (95 L) were carried out. The mixture
was vacuum distilled at below 40 °C to less than 48 L, stirred for at least 1 h at
about 20 °C, then cooled to 0-5 °C. Heptane (95 L) was slowly added and the slurry
was stirred at 0-5 °C for at least 1 h before filtering. The filter cake was washed
with heptane (17 L) and then dried in a 35-40 °C vacuum oven to give 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate
(Intermediate 15, 8.67 kg, 96.1 wt%, 81%); m/z (ES+), [M+H]
+ = 361.
1H NMR (500 MHz, CDCl
3, 27 °C) δ 2.46 (s, 3H), 3.82 (s, 3H), 4.11 (s, 2H), 4.49 (s, 2H), 6.10 (s, 1H), 7.19
(d, 1H), 7.48 - 7.55 (m, 2H), 7.65 - 7.67 (m, 1H), 7.73 - 7.79 (m, 1H), 7.79 - 7.85
(m, 1H).
Intermediate 16: 3-(((3-((Acetylthio)methyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate
[0094]

[0095] Potassium thioacetate (4.15 kg, 36.3 mol) was added to a mixture of 3-(((3-(chloromethyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate
(Intermediate 15, 8.62 kg, 96.1 wt%, 23.0 mol) and MeCN (86 L) while keeping the temperature below
25 °C. The mixture was stirred for 3 h at 15-20 °C. EtOAc (86 L) was then added, followed
by water (86 L). After thorough mixing, the lower layer was removed. The upper layer
was washed with two portions of aq. NaCl (15 wt%, 86 L per portion) and then four
cycles of vacuum distilling at below 40 °C to less than 29 L and then adding MTBE
(86 L x 3 and 60 L on final cycle) were carried out. The mixture was stirred at 30-35
°C for at least 1 h, cooled to and then stirred at below 10 °C for at least 1 h, then
heptane (86 L) was slowly added. The slurry was cooled to and held at 0-5 °C for at
least 1 h before filtering. The filter cake was washed with heptane (17 L) and then
dried in a 35-40 °C vacuum oven to give 3-(((3-((acetylthio)methyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate
(Intermediate 16, 8.44 kg, 97 wt%, 89%); m/z (ES+), [M+H]
+ = 401.
1H NMR (500 MHz, DMSO-
d6, 27 °C) δ 2.28 (s, 3H), 2.45 (s, 3H), 3.75 (s, 3H), 3.91 (s, 2H), 4.42 (s, 2H), 6.04
(s, 1H), 7.36 (d, 1H), 7.53 (ddd, 1H), 7.58 (ddd, 1H), 7.82 (d, 1H), 7.85 (d, 1H),
7.90 (d, 1H).
Intermediate 17: (Ra)-(+)-methyl 17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.14,7.011,15.016,21.020,24.030,35]octatriaconta-1 (37),4(38),6,11,14,16, 18,20,23,29,31 ,33,35-tridecaene-23-carboxylate
[0096]

[0097] A solution of methanesulfonic anhydride (1.20 kg, 6.89 mol) in MeCN (2.5 L) was added
to a solution of (R
a)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-hydroxypropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 9, 1.19 kg, 97.6 wt%, 2.86 mol) and
N,
N-diisopropylethylamine (1.5 L, 8.6 mol) in THF (8.7 L) over 15 min at 0-30 °C, followed
by an MeCN (0.3 L) line wash. The resulting solution was agitated at 20 °C for 5 h
before cooling to approximately -5 °C. Meanwhile, a Lil (1.53 kg, 11.4 mol) solution
was prepared by its portion-wise addition (0.25 kg per portion) to MeCN (13 L) at
below 30 °C. The Lil solution was gradually added to the mesylation reaction mixture
over 20 min at approximately -5 °C, followed by an MeCN (1.2 L) line wash. The resulting
slurry was warmed to 5 °C and stirred at that temperature for 5 h before cooling to
approximately -15°C and holding for 16 h. Toluene (5.8 L), water (11.6 L) and then
a solution of hydrochloric acid (37 wt%, 0.23 L, 2.8 mol) in water (1.1 L) were sequentially
added, followed by a water (0.12 L) line wash. The temperature of the reaction mixture
remained at or below -9 °C throughout the additions. The lower layer was removed and
water (11.6 L) was added to the upper layer and the resulting mixture was agitated
and heated to 0 °C. The lower layer was removed and the upper layer was washed twice
more with water (11.6 L per wash) at approximately 0 °C, mixing well before settling
and removing the lower layer each time. The washed solution remaining in the reactor
was then concentrated by distilling off solvent (8 L) under reduced pressure (210
to 250 mbar, 30 °C to 52 °C), before diluting with MeCN (2.9 L) and refluxing for
30 min at 500 mbar in order to thoroughly degas the solution. It was then cooled and
held at 0 °C for 69 h (over weekend) before repeating the reduced pressure reflux
under nitrogen in case of any air ingress during the long hold. This solution of methyl
6-chloro-7-[3-(iodomethyl)-1,5-dimethyl-pyrazol-4-yl]-1-methyl-3-(3-methylsulfonyloxypropyl)indole-2-carboxylate
was then cooled to -14 °C.
[0098] In parallel, a mixture of 3-(((3-((acetylthio)methyl)-1-methyl-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-yl
acetate
(Intermediate 16, 1.40 kg, 97.8 wt%, 3.42 mol) and MeOH (7.25 L) was heated to reflux and held refluxing
under nitrogen for 30 min before cooling to 0 °C. Methanolic sodium methoxide (25
wt%, 1.6 L, 7.0 mol) was then added gradually over 10 min, before warming the resulting
solution to 20 °C and holding there for 1.7 h. A portion of this solution (approx.
0.35 M; 6.6 L, approx. 2.3 mol) was gradually added to the solution of methyl 6-chloro-7-[3-(iodomethyl)-1,5-dimethyl-pyrazol-4-yl]-1-methyl-3-(3-methylsulfonyloxypropyl)indole-2-carboxylate
from above at approximately -15 °C over 20 min. The resulting mixture was held at
-10 °C for 1.4 h. Another portion of the disodium 3-(((1-methyl-3-(sulfidomethyl)-1H-pyrazol-5-yl)methyl)thio)naphthalen-1-olate
solution (approx. 0.35 M; 1.5 L, approx. 0.53 mol) was added before holding the reaction
mixture at -10 °Cfor 18 h. The mixture was warmed to 20 °C and removed from the reaction
vessel, followed by a MeOH (0.6 L) rinse. DMSO was charged and it was heated with
stirring to 100 °C. Then the intermediate solution (approx. 15 L) was pumped back
into the reactor over 2.8 h at 100 °C, followed by a DMSO (0.6 L) rinse. After holding
the reaction mixture at 100 °C for 0.8 h and then cooling it to just below 60 °C,
toluene (29 L) and water (5.8 L) were added. The mixture's temperature was adjusted
to 50 °C and then a mixture of aq. NaOH (50 wt%, 160 g, 2.02 mol) and water (0.9 L),
followed by a water (0.12 L) rinse, was added. After 10 min, the lower layer was removed.
The upper layer was washed with a solution of NaCl (1.74 kg) in water (18.6 L) at
53 °C and then concentrated by distilling off solvent (6 L) at 160 mbar and jacket
temperature 85 °C to give a toluene solution of the crude product (19.2 kg, 6.1 wt%,
1.7 mol). It was combined with another such solution (18.6 kg, 5.7 wt%, 1.5 mol) prepared
from (R
a)-methyl 6-chloro-7-(3-(hydroxymethyl)-1,5-dimethyl-1H-pyrazol-4-yl)-3-(3-hydroxypropyl)-1-methyl-1H-indole-2-carboxylate
(Intermediate 9, 1.19 kg, 98.0 wt%, 2.87 mol) by following the same procedure. The combined solution
was purified portion-wise (0.84 L per portion, 51 portions) by chromatography on a
compressed column (20 cm diameter x 22 cm long) of Kromasil
® silica (3.0 kg, 10 µm particle size, 60 Å pore size), eluting with a mixture of toluene
and ethanol (approximate volume ratio 93% toluene : 7% ethanol). The product fractions
were evaporated under reduced pressure at 50 °C in two parts until distillation ceased,
to give the product (91 g and 2.40 kg) as a foam. The batches were dissolved in DMSO
(148 g and 3.22 kg) to give DMSO solutions of (
Ra)-(+)-methyl 17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.1
4,7.0
11,15.0
16,21.0
20,24.0
30,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31 ,33,35-tridecaene-23-carboxylate
(Intermediate 17, 239 g, 32.2 wt%, 0.112 mol and 5.63 kg, 37.9 wt%, 3.11 mol) in combined 56% yield;
m/z (ES+), [M+H]
+ = 686.
1H NMR (500 MHz, DMSO-
d6, 27 °C) δ 1.97 (s, 3H), 2.16 - 2.27 (m, 1H), 2.32 - 2.42 (m, 1H), 2.89 (d, 1H), 3.08
(d, 1H), 3.07 - 3.14 (m, 1H), 3.16 (d, 1H), 3.36 - 3.42 (m, 1H), 3.43 (d, 1H), 3.48
(s, 3H), 3.69 (s, 3H), 3.76 (s, 3H), 3.77 - 3.83 (m, 1H), 3.84 (s, 3H), 4.13 (td,
1H), 4.22 (d, 1H), 4.29 (d, 1H), 4.77 (s, 1H), 6.65 (d, 1H), 7.18 (d, 1H), 7.39 -
7.40 (m, 1H), 7.44 - 7.48 (m, 1H), 7.47 - 7.51 (m, 1H), 7.71 - 7.74 (m, 1H), 7.90
(d, 1H), 8.08 - 8.12 (m, 1H).
Compound 1: (Ra)-(+)-17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.14,7.011,15.016,21.020,24.030,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylic
acid
[0099]

[0100] (
Ra)-(+)-methyl 17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.1
4,7.0
11,15.0
16,21.0
20,24.0
30,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylate
(Intermediate 17, 37.9 wt% in DMSO containing 57.3 wt% DMSO; 2.81 kg, 1.55 mol), DMSO (2.81 kg) and
ethanol (1.68 kg) were charged to a 20 L reactor and the solution was heated with
stirring to 50 °C. NaOH (50 wt% in water; 186 g, 2.33 mol), followed by a water (267
mL) line wash, was then added. After 1.5 h, acetic acid (267 mL, 4.66 mol) was added.
Aqueous ethanol (34.5 wt%; 3.0 L) was then added, followed by a Form A (
Ra)-(+)-17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.1
4,7.0
11,15.0
16,21.0
20,24.0
30,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylic
acid monohydrate (0.8 g, 0.001 mol) crystallisation seed. The mixture was agitated
at 50 °C for 4.5 h, then two more portions (4.2 and 1.3 L) of aqueous ethanol (34.5
wt%) were gradually added (over 4.1 and 0.7 h respectively). The slurry was cooled
to 20 °C over 2 h and held at 20 °C for 17 h. The slurry was filtered under suction
and the filter cake was washed twice with aqueous ethanol (34.5 wt%; 2.7 L per wash)
before drying in a 40 °C vacuum oven to give Form A (
Ra)-(+)-17-chloro-5,13,14,22-tetramethyl-28-oxa-2,9-dithia-5,6,12,13,22-pentaazaheptacyclo[27.7.1.1
4,7.0
11,15.0
16,21.0
20,24.0
30,35]octatriaconta-1(37),4(38),6,11,14,16,18,20,23,29,31,33,35-tridecaene-23-carboxylic
acid monohydrate
(Compound 1, 1.01 kg, 99.4 wt%, ≥99.9% e.e., 94%); m/z (ES+), [M+H]
+ = 672.
1H NMR (500 MHz, DMSO-
d6, 27 °C)5 1.96 (s, 3H), 2.16 - 2.28 (m, 1H), 2.30 - 2.42 (m, 1H), 2.88 (d, 1H), 3.06
(ddd, 1H), 3.12 (d, 1H), 3.18 (d, 1H), 3.42 (d, 1H), 3.41 - 3.48 (m, 1H), 3.51 (s,
3H), 3.72 (s, 3H), 3.75 (s, 3H), 3.84 (td, 1H), 4.09 (td, 1H), 4.25 (d, 1H), 4.28
(d, 1H), 4.75 (s, 1H), 6.67 (d, 1H), 7.13 (d, 1H), 7.37 - 7.40 (m, 1H), 7.43 - 7.47
(m, 1H), 7.45 - 7.50 (m, 1H), 7.68 - 7.74 (m, 1H), 7.84 (d, 1H), 8.07 - 8.13 (m, 1H),
13.36 (bs, 1H).
[0101] Chiral purity analysis HPLC method details: column = ChiralPak IE-3, 3 µm 4.6 x 250
mm; temperature = 40 °C; mobile phase = 50:50 ethanol:hexane by volume containing
0.1% TFA, flowing at 0.8 mL/min; detection by UV at 305 nm; inj. volume = 10 µL (this
may be adjusted to achieve a suitable limit of detection); retention times 8.5 and
11.5 min for the
Ra and
Sa enantiomers respectively.
[0102] The XRPD of Form A is shown in
Figure 1 and the results are tabulated below (Table 1).
Table 2. XRPD Peaks for Form A
| Angle (2θ±0.2°) |
Intensity (%) |
| 18.2 |
100.0 |
| 12.5 |
87.7 |
| 14.4 |
82.7 |
| 8.4 |
75.8 |
| 17.2 |
70.4 |
| 26.8 |
64.4 |
| 10.7 |
59.0 |
| 27.7 |
55.9 |
| 30.2 |
45.6 |
| 23.0 |
42.0 |
| 20.5 |
40.5 |
| 19.2 |
39.4 |
| 7.0 |
35.9 |
| 25.0 |
35.3 |
| 17.6 |
34.5 |
| 23.7 |
34.4 |
| 19.8 |
33.4 |
| 24.5 |
31.8 |
| 22.0 |
30.9 |
| 20.9 |
30.8 |
| 24.2 |
28.8 |
| 37.6 |
27.1 |
| 31.5 |
26.9 |
| 22.3 |
26.5 |
| 13.9 |
25.3 |
| 13.7 |
23.9 |
| 29.0 |
23.9 |
| 34.5 |
22.9 |
| 26.3 |
21.3 |
| 13.1 |
20.8 |
| 29.4 |
20.7 |
| 15.6 |
19.8 |
| 36.9 |
17.9 |
| 15.1 |
17.9 |
| 36.4 |
16.7 |
| 32.8 |
16.6 |
| 38.2 |
16.2 |
| 28.6 |
16.1 |
| 35.5 |
14.9 |
[0103] DSC analysis indicated that Form A has an endotherm event of desolvation with an
onset at about 121 °C and a peak at about 158 °C, followed by an endotherm event of
melting/decomposition with an onset at about 181 °C and a peak at about194 °C. TGA
indicated that Form A exhibits a mass loss of about 4.0% upon heating from about 25
°C to about 160 °C. A representative DSC/TGA thermogram of Form A is shown in
Figure 2.
[0104] Single crystal structure analysis confirmed that Form A is a monohydrate form. Crystallographic
data: Space group monoclinic P2(1), unit cell dimensions: a = 13.83(3) Å,
b = 7.578(14) Å,
c = 33.57(6) Å, β = 90.23(2)°,
V = 3518(12) Å
3.
X-Rav Powder Diffraction (XRPD) Analysis
[0105] XRPD analysis was performed using a Bruker D4 diffractometer, which is commercially
available from Bruker AXS Inc
™ (Madison, Wisconsin). The XRPD spectra were obtained by mounting a sample (approximately
20 mg) of the material for analysis on a single silicon crystal wafer mount (e.g.,
a Bruker silicon zero background X-ray diffraction sample holder) and spreading out
the sample into a thin layer with the aid of a microscope slide. The sample was spun
at 30 revolutions per minute (to improve counting statistics) and irradiated with
X-rays generated by a copper long-fine focus tube operated at 40 kV and 40 mA with
a wavelength of 1.5406 angstroms (i.e., about 1.54 angstroms). The sample was exposed
for 1 second per 0.02 degree 2-theta increment (continuous scan mode) over the range
2 degrees to 40 degrees 2-theta in theta-theta mode. The running time was 31 min,
41 s.
[0106] XRPD 2θ values may vary with a reasonable range, e.g., in the range ± 0.2° and that
XRPD intensities may vary when measured for essentially the same crystalline form
for a variety of reasons including, for example, preferred orientation. Principles
of XRPD are described in publications, such as, for example,
Giacovazzo, C. et al. (1995), Fundamentals of Crystallography, Oxford University Press;
Jenkins, R. and Snyder, R. L. (1996), Introduction to X-Ray Powder Diffractometry,
John Wiley & Sons, New York; and
Klug, H. P. & Alexander, L. E. (1974), X-ray Diffraction Procedures, John Wiley and
Sons, New York.
DSC Analysis
[0107] DSC analysis was performed on samples prepared according to standard methods using
a Q SERIES
™ Q1000 DSC calorimeter available from TA INSTRUMENTS
® (New Castle, Delaware). A sample (approximately 2 mg) was weighed into an aluminum
sample pan and transferred to the DSC. The instrument was purged with nitrogen at
50 mL/min and data collected between about 22 °C and 300 °C, using a dynamic heating
rate of about 10 °C/minute. Thermal data was analyzed using standard software,
e.g., Universal v.4.5A from TA INSTRUMENTS
®.
Thermogravimetry Analysis (TGA)
[0108] TGA was performed on samples prepared according to standard methods using a Q SERIES
™ Q5000 thermogravimetry analyzer available from TA Instruments INSTRUMENTS
® (New Castle, Delaware). A sample (approximately 5 mg) was placed into an aluminum
sample pan and transferred to the TGA furnace. The instrument was purged with nitrogen
at 50 mL/min and data collected between 25°C and 300 °C, using a dynamic heating rate
of 10 °C/minute. Thermal data was analyzed using standard software, e.g., Universal
v.4.5A from TA INSTRUMENTS
®.
Example 1: In vitro activity of Compound 1
[0109] Caspase Activity assay: . This is a cell assay to measure the induction of apoptosis in MOLP-8 (multiple myeloma),
KMS-12-BM (multiple myeloma), MV4;11 (acute myeloid leukemia), and NCI-H23 (non-small
cell lung cancer) cells after 6 h treatment with Mcl-1 inhibitors. On the first day,
3000 (MOLP-8, KMS-12-BM, MV4;11) or 1250 (NCI-H23) cells/well were seeded with 50
µ L of growth media (IMDM + 10% FBS+2 mM L-Glu for MV4;11 and RPMI-1640 + 10% FBS+2
mM L-Glu for all others) in 384-well white microplates, and incubated overnight (37
°C, 5% C0
2, 80% RH). On the second day, the cells were treated with Compound I using an ECHO
acoustic liquid handler (10 point half-log serial dilution, 31.5 µ M top concentration,
0.3% final DMSO concentration). After 6 h incubation (37 °C, 5% C0
2, 80% RH), 25 µL of Caspase-Glo 3/7 reagent (Promega) was added into each well, and
plates were incubated at room temperature for 30 min protected from light. Luminescence
was recorded using an Infinite M200 microplate reader (Tecan) with a 100 ms integration
time. EC
50 values were calculated using GeneData analysis software and are shown in Table 2,
below.
Table 2. Results from
in vitro Caspase Activity assay
| Cell Line |
Compound I |
| |
Caspase Activity, EC50 (nM) |
| MOLP-8 |
30 |
| KMS-12-BM |
43 |
| MV4;11 |
20 |
| NCI-H23 |
193 |