[0001] The present invention relates to a new therapeutic treatment of fibrotic diseases.
More in in particular, the present invention relates to the use of pharmaceutical
carriers, such as extracellular vesicles (EVs) derived from stem cells, in the treatment
of fibrotic diseases caused by hyperglycemia. A focus lies on fibrotic renal diseases
such as diabetic nephropathy.
[0002] Fibrosis is often observed following tissue injury. Fibrosis induced by hyperglycemia
is a special type of fibrosis found in diabetic patients. The kidney is often affected
by such fibrotic diseases.
[0003] Diabetes is the main driver of chronic kidney disease (CKD) in the Western world,
accounting for about 50% of new cases. Almost 40% of diabetes sufferers develop diabetic
nephropathy (DN), which has thus become the leading cause of end stage renal disease
(ESRD) in urbanized countries. Patients with CKD are at increased risk not only for
end-stage renal disease, but also for cardiovascular disease and death. Novel targets
for better DN management urgently need to be identified, as ESRD can manifest despite
strict glycaemic control and the application of various therapeutic approaches.
[0004] Early stage DN key pathological features include podocyte damage/loss and mesangial
cell (MC) hypertrophy. The subsequent expansion of the myofibroblast progenitor population
inside the kidney stroma and increased extracellular matrix (ECM) protein synthesis
lead to glomerular basement membrane thickening and tubulo-interstitial fibrosis.
[0005] The renal structural alteration in DN is characterized by an early proliferation
rate of both glomerular and tubular cells and a late accumulation of extracellular
matrix proteins, as collagen IV and fibronectin leading to a progressive increase
of the mesangial mass.
[0006] The role of miRs has been reported to contribute to fibrotic process in different
pathological context including DN. miR21 has gained particular interest in mesangial
cell expansion It has been recently reported that miR21 is also increased in urine
from type 2 diabetic patients. Different miR21 targets have been reported to contribute
to collagen production and fibrosis. PTEN up-regulation resulting in the activation
of Akt-mTOR pathway seems to mainly contribute to this process. As a matter of fact,
in the prior art it was shown that interfering with miR21 reverses kidney histological
abnormalities in a preclinical model of DN. miR genes, like other genes, could be
regulated by transcription factors. In this regard, miR-21 has been described as a
STAT5 target gene in Jurkat cells as well as in mammary cells in response to prolactin.
On the other hand, STAT5 itself could be controlled by different miRs, including miR222
and miR223 suggesting that the scenario is extremely complex.
[0007] Clinical and experimental nephrologists are working in differing fields to improve
CDK outcomes. In particular, essential research, using in vivo and in vitro models,
is currently looking to define the molecular basis for the principal pathways involved
in CKD progression to ESRD and to find new therapeutic approaches to inhibiting renal
fibrosis.
[0008] MSCs of different origin are currently the most widely studied stem cells in regenerative
medicine. Although originally MSCs were thought to home in on and engraft injured
tissues, where they differentiate and replace damaged cells, currently, the positive
effects of MSC transplantation were demonstrated to result from their ability to release
trophic mediators. Several studies have focused on extracellular RNA (exRNA) transporters,
indicating that they may be present in biological fluids in form of vesicles including
exosomes and microvesicles. As these vesicles have distinct biogenesis but share overlapping
features and biological activities, the use of the inclusive term of "extracellular
vesicles" (EVs) has been suggested. EVs have recently gained increased attention as
well-preserved evolutionary cell-to-cell communication mechanisms. In particular,
it has been found that stem cell-derived EVs may mimic the effect of the cells via
the horizontal transfer of functional RNAs, miRs, lipids, and proteins when systemically
or locally administrated in regenerative medicine. EVs recovered from different stem
cell sources can share completely or partially their cargo. Moreover, enrichment of
miRs or proteins can be detected depending of their origin. Although general stem
cell-derived EV functions have been the topic of recent studies in various pathological
settings, how mechanistically they protect cells from damaging cues, as in response
to high glucose, has been only partially investigated.
[0009] WO2011/143499 describes renal stem cells and the extracellular vesicles (EVs) thereof to be effective
in the treatment of fibrosis.
[0010] WO2015/052526 describes the effect of microparticles (i.e. extracellular vesicles, EV) from neural
stem cells for the treatment of fibrosis.
[0011] In order to look for a new therapeutic approach to fibrosis caused by hyperglycemia,
the present inventors have analyzed the effects of EVs released from different stem
cell sources on HG-induced collagen production (where "HG" stands for "high glucose"),
paying particular attention on their effects on STAT5A miR21, miR222, miR100 and TGFβ
expression. In particular, the treatment of diabetic nephropathy and renal fibrosis
has been analyzed.
[0012] As it will be illustrated in detail in the experimental section of the present description,
the results of their studies showed that EVs released from various types of stem cells
protect mesangial cells from HG-induced collagen production. In particular, the inventors
noticed that EVs, by transferring the microRNA designated as miR222, regulate the
expression of STAT5 that in turn controls miR21, TGFb1 expression and matrix protein
synthesis. Moreover, the inventors found that EVs, by driving changes in the balance
between miR21 and miR100 in the recipient cell, could also indirectly contribute to
the inhibition of collagen production. These results indicate that EVs released from
various stem cells can transfer the relevant machinery to preserve mesangial cells
from HG-mediated damage.
[0013] Therefore, a first aspect of the present invention is a pharmaceutically acceptable
carrier carrying miR222, for use in the treatment of a fibrotic disease caused by
hyperglycemia, in particular diabetic nephropathy and/or renal fibrosis. Treatment
of other fibrotic diseases caused by hyperglycaemia, such as cardiomyopathy, nonalcoholic
fatty liver (Ban and Twigg, 2009), in particular NASH (non-alcoholic steatohepatitis),
and diabetic retinopathy is also envisioned.
[0014] According to a preferred embodiment of the invention, the pharmaceutically acceptable
carrier further comprises the microRNA "miR100".
[0015] miR222 and miR100 are microRNAs (miRNAs) known per se; their features and sequences
may be found for example in the database designated as miRBase, under accession numbers
MI0000299 and MI0000102, respectively.
[0016] The pharmaceutical effect can be attributed to the miRNAs contained in the pharmaceutical
carrier. Any efficient transfection of the target cell with miRNAs is envisioned for
effective use in the treatment of fibrotic diseases caused by hyperglycemia. An efficient
transfection of miRNAs requires an appropriate pharmaceutical carrier, preferably
in form of a micro- or nanoparticle. Such carriers are available commercially, including
alginate-based (GEM, Global Cell Solutions), dextran-based (Cytodex, GE Healthcare),
collagen-based (Cultispher, Percell), and polystyrene-based (SoloHill Engineering)
microcarriers.
[0018] An even more preferred pharmaceutical carrier for miRNAs is a vesicle, such as a
liposome or an extracellular vesicle (EV). Extracellular vesicles, such as cell derived
microvesicles or exosomes are the most preferred pharmaceutical carriers.
[0019] Therefore, according to another preferred embodiment of the invention, the pharmaceutically
acceptable carrier is an extracellular vesicle (EV) derived from a stem cell, preferably
from an adult stem cell, more preferably from a mesenchymal stem cell (MSC), such
as e.g. a bone marrow stromal stem cell, or an adipose stem cell (ASC), or a non-oval
human liver progenitor cell (HLSC). HLSC a method of obtaining thereof, are disclosed
in International patent application published as
WO2006126219.
[0020] A further aspect of the invention is a composition of extracellular vesicles isolated
from the conditioned medium of a stem cell, preferably from the conditioned medium
of an adult stem cell, more preferably from the conditioned medium of a mesenchymal
stem cell (MSC) or a human liver stem cell (HLSC), for use in the treatment of a fibrotic
disease caused by hyperglycaemia, preferably diabetic nephropathy, renal fibrosis,
cardiomyopathy or nonalcoholic fatty liver in particular NASH, or diabetic retinopathy.
The extracellular vesicles of the claimed composition preferably contain the microRNA
miR222 and optionally the microRNA miRNA100.
[0021] The extracellular vesicle (EV) for use according the invention is a naturally occurring
EV or, alternatively, an EV which has been engineered to contain a significantly higher
amount of miR222 or miR100 compared to the naturally-occurring extracellular vesicle
(EV), and which is obtainable by loading miR222 or miR100 to an isolated extracellular
vesicle
ex vivo.
[0022] European patent application published as
EP 2010663 provides the person skilled in the art with instructions on how to engineer EVs with
specific miRNAs. Techniques known to the skilled person introducing RNA into vesicles
or exosomes are transfection or co-incubation. Known transfection methods are for
example electroporation, lipofection, microinjection, transfection by viral and nonviral
vectors, magnet assisted transfection and sonoporation. Consequently, an engineered
EV to which miR222 or miR100 has been introduced
ex vivo is another aspect of the invention.
[0023] As illustrated in further detail in the experimental part that follows, a suitable
method to assess the significantly higher amount of miR222 or miR100 compared to the
naturally-occurring extracellular vesicle (EV) is the ΔΔCT method of qPCR data analysis.
Expressed as a relative value, the loading efficiency, i.e. the amount of the target
molecule (i.e. either miR222 or miR100) which is present in the engineered EV of the
invention as compared to the natural amount is of at least 2-fold. Alternatively,
the loading efficiency may be expressed in absolute terms as the number of loaded
target molecules per EV. It is envisaged that this value may range from about 1x10
3 to about 1x10
5 target molecules/EV higher that the natural amount.
[0024] The following experimental part, which discloses the experiments carried out by the
inventors with EVs derived from MSCs and HLSCs, is provided by way of illustration
only and is not intended to limit the scope of the invention as determined by the
appended claims.
[0025] The results obtained by the inventors demonstrated that, in mesangial cells, HG drives
the expression of TGFβ and the production of collagen via STAT5A-mediated pathway.
By expressing a ΔNSTAT5 construct in mesangial cells cultured in HG, the inventors
demonstrated that STAT5A activation controls miR21 expression. The inventors have
also shown that EVs released from MSCs and HLSCs protect mesangial cells from HG-induced
collagen production. In particular, they have noticed that EVs, by transferring miR222
to mesangial cells, regulate the expression of STAT5A that in turn controls miR21
content, TGFβ expression and matrix protein synthesis. These results were further
confirmed by over-expressing miR222 in mesangial cells cultured in HG conditions.
Moreover, by over-expressing miR100, the inventors demonstrated that changes in the
balance between miR21 and miR100 in the recipient cell, resulting from transfer of
EV cargo, lead to mTOR down regulation and impairment of both TGFβ expression and
collagen production. Interestingly, these effects were only detected in HG-cultured
cells.
EXAMPLE 1
MATERIALS AND METHODS
Cell cultures
[0026] Human mesangial cells (MCs) were cultured in DMEM with 1.0 g/l D-glucose (low glucose,
LG) or DMEM 25 mM D-glucose (high glucose, HG). MCs were also cultured in DMEM LG
and HG without fetal bovine serum (FBS) for 24 hours in the presence of MSC- or HLSC-derived
EVs. The same number of EVs was used to stimulate MC in all experimental conditions
(7000 EV/ target cell).
Isolation and quantification of MSC- and HLSC derived-EVs
[0027] MSCs and HLSCs were cultured in EndoGRO Medium, without fetal bovine serum, for 24
h in order to collect EVs from supernatants. After being centrifuged at 3000 g for
30 min to remove debris, cell-free supernatants were submitted to differential ultracentrifugation
at 10 000 and 100 000 g (Beckman Coulter Optima L-90K ultracentrifuge; Beckman Coulter,
Fullerton, CA, USA) for 3 h at 4 °C. EVs were either used fresh or were stored at
-80°C after re-suspension in DMEM which was supplied with 1% DMSO (Deregibus 2007).
Frozen EVs were washed and pelleted by 100k g ultracentrifugation to remove DMSO before
cellular experiments. No difference in biological activity was observed between fresh
and stored EVs. The protein content of EVs was quantified using the Bradford method
(Bio-Rad, Hercules, CA, USA). Any possible contamination was tested using a Limulus
amebocyte assay (concentration <0.1 ng/ml) (Charles River Laboratories, Inc., Wilmington,
MA, USA). EV size distribution analysis was performed using a NanoSight LM10 (NanoSight
Ltd, Minton Park UK). The particles in the samples were illuminated using a laser
light source and the scattered light was captured by camera and analyzed using Nanoparticle
Tracking Analysis (NTA). NTA automatically tracked and sized particles according to
Brownian motion and the diffusion coefficient (Dt).
Cell proliferation
[0028] Cell proliferation in both LG and HG conditions with or without EVs was assayed by
direct cell count by three different operators.
Western blot analysis
[0029] MCs were lysed and protein concentrations obtained as previously described (Olgasi,
2014). 50 µg proteins were subjected to SDS-PAGE, transferred into nitrocellulose
membranes and processed as previously described (Olgasi, 2014). Densitometric analysis
was used to calculate the differences in the fold induction of protein levels which
were normalized to actin. Values are reported as relative amounts.
RNA isolation and quantitative real-time PCR (qRT-PCR)
[0030] Total RNA was isolated from MCs using the TRIzol reagent (Invitrogen) according to
manufacturer's instructions. RNA was quantified spectrophotometrically (Nanodrop ND-1000,
Wilmington, DE, USA). RNA from cells was then reverse-transcribed using a TaqMan microRNA
RT kit specific for miR-222, or Syber Green microRNA RT Kit specific for miR-21 and
miR-100. Thus RNA was subjected to qRT-PCR using a TaqMan/Syber microRNA assay kit
and the ABI PRISM 7700 sequence detection system (Applied Biosystems, Foster City,
CA, USA). MiR expression was normalized to the small nuclear RNA, RNU6B.
Transfection of MCs with premiR-100, and premiR-222
[0031] Gain-of-function experiments were performed in mesangial cells transfected either
with the pre-miR negative control or the pre-miR100 and premiR-222 precursor (Applied
Biosystem), according to manufacturer's instructions. All proteins extracted from
cellular lysis of these samples were then subjected to western blot and all RNAs were
analysed with RT-PCR.
Transfer of miRs from EVs to MCs
[0032] In order to analyze miR-222 transfer from EVs to MCs, miR transfer experiments were
conducted as previously described by Yuan (Yuan, 2009). 5×10
5 cells/well of MCs were incubated with the a transcriptional inhibitor, α-amanitin,
(Lee, 2004) in the absence or in the presence of EVs pretreated or not with RNAse.
Total RNA from MCs, treated as above, were subjected to qRT-PCR for miR expression.
As an indirect measure of miR transfer, the inventors determined the difference in
Ct values between α-amanitin treated cells in the absence or in the presence of EVs
pretreated or not with RNAse; a positive value indicated transfer of miR into target
cells. If no signal was detected, a Ct value of 40 was assigned to the sample.
Transfection of dominant negative (ΔN) STAT5A construct.
[0033] In selected experiments, MCs cultured for 48 hours in the presence or absence of
HG were transiently transfected with the ΔNSTAT5 construct (Defilippi, 2005, Zeoli,
2008). Then cells were processed to obtain cell extracts for Western blot analysis
or total RNA isolation to evaluate miR21 expression.
Senescence assay
[0034] Senescence assay Senescence was evaluated by measuring the acidic β-galactosidase
activity of N-ASCs that were differently cultured, as previously described (Togliatto,
2010).
Statistical analysis
[0035] All data are presented as mean or percentage±s.e.m. The D'Agostino-Pearson test was
used to test normality. Data on biometric measurements of patients and controls, on
the in vitro angiogenic, migration, adhesion and senescence assays, on miR expression,
cell proliferation, loss- and gain-of-function experiments and finally on densitometric
analysis for western blots were analyzed using Student's t-tests for two-group comparison
and using one-way analysis of variance, followed by Tukey's multiple comparison test,
for 3 groups. Three experiments performed in triplicate were the minimum sample size
ensuring 90% statistical power between experimental groups, with a probability level
of 0.05, two-tailed hypothesis. The cutoff for statistical significance was set at
P<0.05 (*P<0.05, **P<0.01, ***P<0.001). All statistical analyses were carried out
using GraphPad Prism version 5.04 (GraphPad Software, Inc., La Jolla, CA, USA).
RESULTS
Short term high glucose stimulation induces mesangial cell (MC) proliferation, collagen
type IV production and miR21 expression.
[0036] To mimic acute hyperglycaemia-mediated mesangial cell damage MCs were cultured in
high glucose medium (25 mM) for 48 hours. Proliferation and senescence were analyzed.
As shown in Fig. 1A HG promotes a significant increase in MC proliferation as shown
by the number of cells and by cyclin D1 content (Fig. 1B). No changes in the number
of senescent MCs were detected (Fig. 1C). MC collagen production is a hallmark of
glomerular damage. Thus, collagen production was evaluated in MCs challenged with
HG. Western blot analysis on both cell total lysates and supernatants showed a significant
increase in collagen type IV production when compared with low glucose treaded cells
(Fig. 1 D and E). The increase in collagen production indicates MC shift to a fibrotic
secretive phenotype. TGFβ already barely produced by MC was further increased by HG
treatment (Fig. 1F). miR 21, a well known miRNA involved in diabetic nephropathy,
is known to induce mesangial cell matrix expansion. Consistently HG treatment was
found to induce miR21 expression (Fig. 1G). The involvement of this signaling pathway
was investigated. The inventors found that, even in MC treated with HG, high level
of mTOR could be detected (Fig. 1H).
EVs from MSCs and HLSCs inhibit collagen production and miR21 expression in MCs
[0037] EVs were recovered from MSCs, and HLSCs and assayed on MC proliferation and collagen
production. Thus, MCs cultured in LG or HG concentration for 48 hours were serum starved
and subjected to EVs treatment for 18 hours. As shown in Fig 2A, EVs did not interfere
with MC proliferation. However, when collagen production was evaluated, EVs recovered
from MSCs and HLSCs significantly reduced collagen production (Fig. 2B and C). Consistently,
down-regulation of miR21(Fig. 2D), mTOR (Fig. 2E-F) and TGFβ expression were detected
(Fig. 2G-H).
MSCs and HLSCs-derived EVs regulate STAT5A expression in MCs subjected to HG
[0038] The observation that EVs derived from MSCs and HLSCs affect miR21 expression led
the inventors to investigate whether STAT5A could be involved in its regulation. To
this end MCs treated with HG in the presence or in the absence of EVs were analyzed
for STAT5A activation. As shown in Fig 3A, STAT5A underwent activation in response
to HG treatment, effect which was inhibited by EV treatment (Fig 3B-C). The observation
that a reduced STAT5A expression was detected in these experimental conditions strongly
suggests the possibility that EV cargo might regulate its expression. To investigate
this possibility a ΔNSTAT5A construct was transfected in MCs (Fig. 3D) and miR21 expression
analyzed. As reported in Fig 3E, inhibition of STAT5A activation led to down-regulation
of miR21 in HG-treated MCs. Consistently, when collagen production was analyzed in
these experimental conditions, its expression was found almost completely suppressed.
Interestingly, it was also demonstrated that inhibition of STAT5A signaling pathway
prevents HG-mediated TGFβ expression as well (Fig. 3F).
EV miR cargo regulates STAT5A expression
[0039] MSC and HLSC EV mirnomic has been previously reported (Collino 2010). The inventors
investigated whether miRs expressed in EVs from such cellular sources can be relevant
in regulating the signaling pathway activated by HG. Among them miR222 is included.
miR222 has been reported to be a direct post-transcriptional regulator of STAT5A.
Therefore, the expression of miR222 was evaluated in HG-cultured MCs treated with
EV. As shown in Fig. 4A, miR222 is down regulated upon HG treatment while increased
upon EV treatment .That this effect depended on the release of EV-miR222 content into
MCs was demonstrated by experiments performed in the presence of amanitin and EVs
pretreated or not with RNAse (Fig. 4B). To further confirm these results gain-of function
experiments were performed using MCs transfected with premiR222 and cultured in HG
conditions. As expected over-expression of miR222 led to a drastic reduction of STAT5A
content as well as miR21 cellular content, TGFβ expression and collagen production
in HG treated MCs (Fig. 4D-F). More importantly, such event did not occur in LG-cultured
MCs, indicating that a specific signaling pathway is induced by the hyperglycaemic
milieu.
EV-mediated miR21 down-regulation can promote miR100 post-transcriptial activity which
contributes to inhibition of collagen production
[0040] The inventors investigated whether miR100 can also contribute to EV-mediated effects.
First, miR100 expression was evaluated in MCs subjected to EV treatment. As shown
in Fig 5A, while miR100 MC content increased upon HG treatment, no changes in its
content could be detected after EV treatment. However, as the balance of intracellular
miRs could direct specific biological responses, the inventors hypothesized that the
decreased miR21 intracellular content associated with EV treatment could good deed
miR100 post-transcriptional activity. To validate this hypothesis gain-of function
experiments using premiR100 were performed in HG-treated MCs. Indeed, data reported
in Fig. 5B demonstrate that when miR100 expression is favoured with respect to miR21
it can drive signals, mediated by mTOR down-regulation, which result in inhibition
of MC TGFβ expression and collagen production (Fig. 5C-D). Again, miR100 over-expression
did not impact on LG-cultured MCs (Fig.5C-D). Collectively these data indicate that
the fine tuning of miR content into recipient cells, associated with EV treatment,
might also contribute to their healing properties.
EXAMPLE 2
In vivo model of diabetic nephropathy: treatment with EVs-derived Stem Cells (SC-EVs)
[0041] An experimental study was conducted in order to investigate whether EVs released
from different stem cell sources or serum may interfere with damage in an experimental
diabetic nephropathy. To this end, mice were subjected to streptozotocin (STZ) treatment
(35 mg/kg for 4 consecutive days, i.p.) to produce an animal model of hyperglycaemia.
After the onset of diabetes at time zero (T0), the diabetic mice were subjected to
5 EV-treatments (1x10
10 each) once a week (T7, T14, T21 and T28). The following parameters were measured
after 1 month from the onset of diabetes (T30, end point): glycaemia, weight, urinary
albumin/creatinine ratio, urinary pH, plasma creatinine (CREA). Additionally, the
kidneys were subjected to the following histological analyses: glomerular and interstitial
fibrosis, glomerular area, Bowman's space, tubular damage. The results obtained are
illustrated in Fig. 6-8, which show the results obtained for each of the following
mice groups: 10 healthy mice; 15 diabetic mice (DN); 10 MSC-EVs-treated mice; 10 Serum
EVs-treated mice; 10 ASC-EVs-treated mice and 6 HLSC-EVs-treated mice.
[0042] Fig. 6 shows that plasma creatinine was increased in diabetic mice and that a significant
reduction in plasma creatinine occurred in mice treated with all EV sources. Fig.
7 shows that a significant improvement in terms of reduction of collagen deposition
within glomeruli and in the interstitial space occurred in diabetic mice treated with
EVs. Fig. 8 shows that treatment with all EVs tested led to a relevant improvement
of tubular damage as compared to diabetic mice. All data are expressed as mean ± SEM.
*p < 0.05, versus DN, **p < 0.001 versus DN. Furthermore for all EV sources a significant
reduction in ACR and a significant restoration of pH values was shown.
EXAMPLE 3
Extracellular vesicles enrichment with miRNA by transfection of stem cells: method
for EV engineering
[0043] In order to enrich miRNA content in stem cell derived EVs, mesenchymal stem cells
(MSCs) were transfected by electroporation using the Neon transfection system (Invitrogen)
according to the manufacturer's instructions. 600 pmol of a mimic which is not present
in naturally-occurring MSCs, i.e. cel-miR-39, were used to enrich 1 x 10
6 MSCs that were seeded in complete medium supplemented with foetal calf serum (FCS)
and without antibiotics. A scramble mimic was used as the negative control (SCR).
[0044] The following day the medium was replaced and the transfected cells were incubated
overnight with RPMI without FCS. The supernatant was collected and centrifuged at
2,000 g for 15 minutes to remove cell debris and apoptotic bodies and then concentrated
at 4 °C using ultrafiltration units (Amicon Ultra-PL 3, Millipore) with a 3 kDa molecular
weight cut-off. A Concentrated Medium (CM) containing EVs was supplemented with 1%
dimethyl sulfoxide and kept at -80 °C until use.
[0045] The RNA analysis was carried out by precipitation of the Concentrated Medium containing
EVs using PEG at 4°C overnight. The EV pellet was washed twice with PBS 1X and the
RNA was extracted using the RNA/DNA/Protein Purification Plus Kit (Norgen Biotek).
RNA samples were retrotranscribed and quantitative real time PCR was performed with
the miScript PCR system (Qiagen). RNU6B or RNU48 were used as the housekeeping controls
(CTL). EVs from MSCs subjected to electroporation with no target (cel-miR-39) and
no scramble were also used as a further control (EP).
[0046] Fig. 9 shows the results obtained, expressed in terms of RQ (relative quantity) and
fold change, obtained by applying the comparative or ΔΔC
T method of qPCR data analysis to calculate the loading efficiency.
[0047] In the comparative or ΔΔC
T method of qPCR data analysis, the C
T values obtained from two different experimental RNA samples are directly normalized
to a housekeeping gene and then compared. First, the difference between the C
T values (ΔC
T) of the gene of interest and the housekeeping gene is calculated for each experimental
sample. Then, the difference in the ΔC
T values between the experimental and control samples ΔΔC
T (i.e. calibrators) is calculated.
The fold-change in expression of the gene of interest between the two samples is then
RQ = 2
-ΔΔCt
In the experiment at issue RQ was calculated as follows:

|
(CT = cycle threshold) |
where the target is cel-miR-39 and the reference is the housekeeping control (RNU6B
or RNU48).
ΔΔ C
T = ΔC
T test sample - ΔC
T calibrator sample, where the calibrator sample are EVs derived from untreated cells
and the test sample are the EVs derived from treated cells.
[0048] Fig. 9 shows that MSCs can be effectively loaded with miRNA molecules by electroporation
and that the target miRNA molecules are present both in the MSCs themselves and in
the EVs derived from the loaded MSCs. The amount of target miRNA loaded to the EVs
is approximately 100-fold lower than the amount of target miRNA loaded to the MSCs.
[0049] Therefore, a reasonable estimate of the loading efficiency expressed as the number
of loaded target molecules/EV is comprised within the range of from 1x10
3 to 1x10
5.
[0050] The upper limit of this range is based on Fig. 5a of Fuhrmann et al. (2014), which
shows a loading efficiency approximately ranging from 10
4 and 10
5, and on the NTA count of the EV particles obtained upon transfection of MSCs with
various types of miRNAs,
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