[0002] Disclosed herein is a modulator of Cystic Fibrosis Transmembrane Conductance Regulator
(CFTR), pharmaceutical compositions containing the modulator, methods of treatment
of cystic fibrosis, and a process for making the modulator.
[0003] Cystic fibrosis (CF) is a recessive genetic disease that affects approximately 70,000
children and adults worldwide. Despite progress in the treatment of CF, there is no
cure.
[0004] In patients with CF, mutations in CFTR endogenously expressed in respiratory epithelia
lead to reduced apical anion secretion causing an imbalance in ion and fluid transport.
The resulting decrease in anion transport contributes to enhanced mucus accumulation
in the lung and accompanying microbial infections that ultimately cause death in CF
patients. In addition to respiratory disease, CF patients typically suffer from gastrointestinal
problems and pancreatic insufficiency that, if left untreated, result in death. In
addition, the majority of males with cystic fibrosis are infertile, and fertility
is reduced among females with cystic fibrosis.
[0006] The deletion of residue 508 in CFTR prevents the nascent protein from folding correctly.
This results in the inability of the mutant protein to exit the endoplasmic reticulum
(ER) and traffic to the plasma membrane. As a result, the number of CFTR channels
for anion transport present in the membrane is far less than observed in cells expressing
wild-type CFTR, i.e., CFTR having no mutations. In addition to impaired trafficking,
the mutation results in defective channel gating. Together, the reduced number of
channels in the membrane and the defective gating lead to reduced anion and fluid
transport across epithelia. (
Quinton, P. M. (1990), FASEB J. 4: 2709-2727). The channels that are defective because of the F508del mutation are still functional,
albeit less functional than wild-type CFTR channels. (
Dalemans et al. (1991), Nature Lond. 354: 526-528;
Pasyk and Foskett (1995), J. Cell. Biochem. 270: 12347-50). In addition to F508del, other disease-causing mutations in CFTR that result in
defective trafficking, synthesis, and/or channel gating could be up- or down-regulated
to alter anion secretion and modify disease progression and/or severity.
[0007] CFTR is a cAMP/ATP-mediated anion channel that is expressed in a variety of cell
types, including absorptive and secretory epithelia cells, where it regulates anion
flux across the membrane, as well as the activity of other ion channels and proteins.
In epithelial cells, normal functioning of CFTR is critical for the maintenance of
electrolyte transport throughout the body, including respiratory and digestive tissue.
CFTR is composed of 1480 amino acids that encode a protein which is made up of a tandem
repeat of transmembrane domains, each containing six transmembrane helices and a nucleotide
binding domain. The two transmembrane domains are linked by a large, polar, regulatory
(R)-domain with multiple phosphorylation sites that regulate channel activity and
cellular trafficking.
[0008] Chloride transport takes place by the coordinated activity of ENaC and CFTR present
on the apical membrane and the Na
+-K
+-ATPase pump and Cl- channels expressed on the basolateral surface of the cell. Secondary
active transport of chloride from the luminal side leads to the accumulation of intracellular
chloride, which can then passively leave the cell via Cl
- channels, resulting in a vectorial transport. Arrangement of Na
+/2Cl
-/K
+ co-transporter, Na
+-K
+-ATPase pump and the basolateral membrane K
+ channels on the basolateral surface and CFTR on the luminal side coordinate the secretion
of chloride via CFTR on the luminal side. Because water is probably never actively
transported itself, its flow across epithelia depends on tiny transepithelial osmotic
gradients generated by the bulk flow of sodium and chloride.
[0009] A number of CFTR modulating compounds have recently been identified. However, compounds
that can treat or reduce the severity of the cystic fibrosis and other CFTR mediated
diseases, and particularly the more severe forms of these diseases, are still needed.
[0010] Any references in the description to methods of treatment refer to the compounds,
pharmaceutical compositions and medicaments of the present invention for use in a
method for treatment of the human (or animal) body by therapy (or for diagnosis).
[0011] Thus, one aspect of the disclosure provides a CFTR modulating compound, (14
S)-8-[3-(2-{Dispiro[2.0.2.1]heptan-7-yl}ethoxy)-1H-pyrazol-1-yl]-12,12-dimethyl-2λ6-thia-3,9,11,18,23-pentaazatetracyclo
[17.3.1.111,14.05,10]tetracosa-1(22),5,7,9,19(23),20-hexaene-2,2,4-trione (Compound
I) and pharmaceutically acceptable salts thereof. Compound
I can be depicted as having the following structure:

[0012] Other aspects of the disclosure provide pharmaceutical compositions comprising Compound
I and/or at least one pharmaceutically acceptable salt thereof, which compositions
may further include at least one additional active pharmaceutical ingredient and/or
at least one carrier. Yet other aspects of the disclosure are methods of treating
the CFTR-mediated disease cystic fibrosis comprising administering Compound
I and/or at least one pharmaceutically acceptable salt thereof, optionally as part
of a pharmaceutical composition comprising at least one additional component, to a
subject in need thereof. A further aspect of the disclosure provides processes of
making Compound
I and/or pharmaceutically acceptable salts thereof is also disclosed.
[0013] One embodiment provides a method of treating the CFTR-mediated disease cystic fibrosis
comprising administering (14
S)-8-[3-(2-{Dispiro[2.0.2.1]heptan-7-yl}ethoxy)-1H-pyrazol-1-yl]-12,12-dimethyl-2λ6-thia-3,9,11,18,23-pentaazatetracyclo
[17.3.1.111,14.05,10]tetracosa-1(22),5,7,9,19(23),20-hexaene-2,2,4-trione (Compound
I), alone or in combination with (
R)-1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)-N-(1-(2,3-dihydroxypropyl)-6-fluoro-2-(1-hydroxy-2-methylpropan-2-yl)-1H-indol-5-yl)cyclopropanecarboxamide
(Compound
II), and/or N-[2,4-bis(1,1-dimethylethyl)-5-hydroxyphenyl]-1,4-dihydro-4-oxoquinoline-3-carboxamide
(Compound
III) or
N-(2-(
tert-butyl)-5-hydroxy-4-(2-(methyl-d3)propan-2-yl-1,1,1,3,3,3-d6)phenyl)-4-oxo-1,4-dihydroquinoline-3-carboxamide
(Compound
III-d). In certain embodiments, the method of treating the CFTR-mediated disease cystic
fibrosis comprises administering Compound
I in combination with Compound
III or
III-d and 3-(6-(1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)cyclopropanecarboxamido)-3-methylpyridin-2-yl)benzoic
acid (Compound
IV). In some embodiments, Compound
I is administered in the same composition with Compound
II and Compound
III. In some embodiments, Compound
I is administered in the same composition with Compound
II and Compound
III-d. In some embodiments, Compound
I is administered in the same composition with Compound
III and Compound
IV. In some embodiments, Compound
I is administered in the same composition with Compound
III-d and Compound
IV. In some embodiments, a composition comprising Compound
I is co-administered with a separate composition comprising Compound
II and/or Compound
III. In some embodiments, a composition comprising Compound
I is co-administered with a separate composition comprising Compound
II and/or Compound
III-d. In some embodiments, a composition comprising Compound
I is co-administered with a separate composition comprising Compound
III and Compound
IV. In some embodiments, a composition comprising Compound
I is co-administered with a separate composition comprising Compound
III-d and Compound
IV.
Definitions
[0014] "Compound
I" as used throughout this disclosure refers to (14
S)-8-[3-(2-{Dispiro[2.0.2.1]heptan-7-yl}ethoxy)-1H-pyrazol-1-yl]-12,12-dimethyl-2λ6-thia-3,9,11,18,23-pentaazatetracyclo[17.3.1.111,14.05,10]tetracosa-1(22),5,7,9,19(23),20-hexaene-2,2,4-trione,
which can be depicted as having the following structure:

Compound
I may be in the form of an isomeric mixture or enantioenriched (e.g., >90% ee, >95%
ee, > 98% ee) isomers. Compound
I may be in the form of a pharmaceutically acceptable salt.
[0015] "Compound
II" as used herein, refers to (
R)-1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)-
N-(1-(2,3-dihydroxypropyl)-6-fluoro-2-(1-hydroxy-2-methylpropan-2-yl)-1H-indol-5-yl)cyclopropanecarboxamide,
which can be depicted with the following structure:

Compound
II may be in the form of a pharmaceutically acceptable salt.
[0016] "Compound
III" as used throughout this disclosure refers to
N-(5-hydroxy-2,4-di-
tert-butyl-phenyl)-4-oxo-1H-quinoline-3-carboxamide which is depicted by the structure:

[0017] Compound
III may also be in the form of a pharmaceutically acceptable salt. In some embodiments,
a deuterated derivative of Compound
III (Compound
III-d) is employed in the compositions and methods disclosed herein. A chemical name for
Compound
III-d is
N-(2-(
tert-butyl)-5-hydroxy-4-(2-(methyl-d3)propan-2-yl-1,1,1,3,3,3-d6)phenyl)-4-oxo-1,4-dihydroquinoline-3-carboxamide,
as depicted by the structure:

Compound
III-d may be in the form of a pharmaceutically acceptable salt.
[0018] "Compound
IV" as used herein, refers to 3-(6-(1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)cyclopropanecarboxamido)-3-methylpyridin-2-yl)benzoic
acid, which is depicted by the chemical structure:

Compound
IV may be in the form of a pharmaceutically acceptable salt.
[0019] As used herein, "CFTR" means cystic fibrosis transmembrane conductance regulator.
[0020] As used herein, "mutations" can refer to mutations in the
CFTR gene or the CFTR protein. A
"CFTR gene mutation" refers to a mutation in the
CFTR gene, and a "CFTR protein mutation" refers to a mutation in the CFTR protein. A genetic
defect or mutation, or a change in the nucleotides in a gene in general results in
a mutation in the CFTR protein translated from that gene, or a frame shift(s).
[0021] The term "F508del" refers to a mutant CFTR protein which is lacking the amino acid
phenylalanine at position 508.
[0022] As used herein, a patient who is "homozygous" for a particular gene mutation has
the same mutation on each allele.
[0023] As used herein, a patient who is "heterozygous" for a particular gene mutation has
the particular mutation on one allele, and a different mutation on the other allele.
[0024] As used herein, the term "modulator" refers to a compound that increases the activity
of a biological compound such as a protein. For example, a CFTR modulator is a compound
that increases the activity of CFTR. The increase in activity resulting from a CFTR
modulator includes but is not limited to compounds that correct, potentiate, stabilize
and/or amplify CFTR.
[0025] As used herein, the term "CFTR corrector" refers to a compound that facilitates the
processing and trafficking of CFTR to increase the amount of CFTR at the cell surface.
Compounds
I and
II disclosed herein are CFTR correctors.
[0026] As used herein, the term "CFTR potentiator" refers to a compound that increases the
channel activity of CFTR protein located at the cell surface, resulting in enhanced
ion transport. Compound
III and
III-d disclosed herein are CFTR potentiators. It will be appreciated that when a description
of a combination of Compound
I and other specified CFTR modulating agents is provided herein, reference to "Compound
III or
III-d" in connection with the combination means that either Compound
III or Compound
III-d, but not both, is included in the combination.
[0027] As used herein, the term "active pharmaceutical ingredient" or "therapeutic agent"
("API") refers to a biologically active compound.
[0029] As used herein, the term "amorphous" refers to a solid material having no long-range
order in the position of its molecules. Amorphous solids are generally supercooled
liquids in which the molecules are arranged in a random manner so that there is no
well-defined arrangement, e.g., molecular packing, and no long-range order. Amorphous
solids are generally isotropic, i.e. exhibit similar properties in all directions
and do not have definite melting points. For example, an amorphous material is a solid
material having no sharp characteristic crystalline peak(s) in its X-ray power diffraction
(XRPD) pattern (i.e., is not crystalline as determined by XRPD). Instead, one or several
broad peaks (e.g., halos) appear in its XRPD pattern. Broad peaks are characteristic
of an amorphous solid. See,
US 2004/0006237 for a comparison of XRPDs of an amorphous material and crystalline material. In some
embodiments, a solid material may comprise an amorphous compound, and the material
may, for example, be characterized by a lack of sharp characteristic crystalline peak(s)
in its XRPD spectrum (i.e. the material is not crystalline, but is amorphous, as determined
by XRPD). Instead, one or several broad peaks (e.g. halos) may appear in the XRPD
pattern of the material. See
US 2004/0006237 for a comparison of XRPDs of an amorphous material and crystalline material. A solid
material, comprising an amorphous compound, may be characterized by, for example,
a wider temperature range for the melting of the solid material, as compared to the
range for the melting of a pure crystalline solid. Other techniques, such as, for
example, Raman spectroscopy, infrared spectroscopy, and solid state NMR may be used
to characterize crystalline or amorphous forms.
[0030] In some embodiments, a solid material may comprise a mixture of crystalline solids
and amorphous solids. A solid material prepared to comprise an amorphous compound
may also, for example, contain up to 30% of a crystalline solid. In some embodiments,
a solid material prepared to comprise an amorphous compound may also, for example,
contain up to 25%, 20%, 15%, 10%, 5%, or 2% of a crystalline solid. In embodiments
wherein the solid material contains a mixture of crystalline solids and amorphous
solids, the characterizing data, such as XRPD, may contain indicators of both crystalline
and amorphous solids.
[0031] As used herein, the term "substantially amorphous" refers to a solid material having
little or no long-range order in the position of its molecules. For example, substantially
amorphous materials have less than 15% crystallinity (e.g., less than 10% crystallinity,
less than 5% crystallinity, or less than 2% crystallinity). It is also noted that
the term 'substantially amorphous' includes the descriptor, 'amorphous', which refers
to materials having no (0%) crystallinity.
[0032] As used herein, the term "dispersion" refers to a disperse system in which one substance,
the dispersed phase, is distributed, in discrete units, throughout a second substance
(the continuous phase or vehicle). The size of the dispersed phase can vary considerably
(e.g. colloidal particles of nanometer dimension, to multiple microns in size). In
general, the dispersed phases can be solids, liquids, or gases. In the case of a solid
dispersion, the dispersed and continuous phases are both solids. In pharmaceutical
applications, a solid dispersion can include a crystalline drug (dispersed phase)
in an amorphous polymer (continuous phase); or alternatively, an amorphous drug (dispersed
phase) in an amorphous polymer (continuous phase). In some embodiments, a solid dispersion
includes the polymer constituting the dispersed phase, and the drug constitute the
continuous phase. Or, a solid dispersion includes the drug constituting the dispersed
phase, and the polymer constituting the continuous phase.
[0033] The terms "patient" and "subject" are used interchangeably and refer to an animal
including humans.
[0034] As used herein, the terms "treatment," "treating," and the like generally mean the
improvement of CF or its symptoms or lessening the severity of CF or its symptoms
in a subject. "Treatment," as used herein, includes, but is not limited to, the following:
increased growth of the subject, increased weight gain, reduction of mucus in the
lungs, improved pancreatic and/or liver function, reduction of chest infections, and/or
reductions in coughing or shortness of breath. Improvements in or lessening the severity
of any of these symptoms can be readily assessed according to standard methods and
techniques known in the art.
[0035] As used herein, the term "in combination with," when referring to two or more compounds,
agents, or additional active pharmaceutical ingredients, means the administration
of two or more compounds, agents, or active pharmaceutical ingredients to the patient
prior to, concurrently with, or subsequent to each other.
[0036] The terms "about" and "approximately", when used in connection with doses, amounts,
or weight percent of ingredients of a composition or a dosage form, include the value
of a specified dose, amount, or weight percent or a range of the dose, amount, or
weight percent that is recognized by one of ordinary skill in the art to provide a
pharmacological effect equivalent to that obtained from the specified dose, amount,
or weight percent. The terms "about" and "approximately" may refer to an acceptable
error for a particular value as determined by one of skill in the art, which depends
in part on how the values is measured or determined. In some embodiments, the terms
"about" and "approximately" mean within 20%, 15%, 10%, 5%, 4%, 3%, 2%, 1%, or 0.5%
of a given value or range.
[0037] One of ordinary skill in the art would recognize that, when an amount of "a compound
or a pharmaceutically acceptable salt thereof" is disclosed, the amount of the pharmaceutically
acceptable salt form of the compound is the amount equivalent to the concentration
of the free base of the compound. It is noted that the disclosed amounts of the compounds
or their pharmaceutically acceptable salts thereof herein are based upon their free
base form. For example, "100 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof" includes 100 mg of Compound
I and a concentration of a pharmaceutically acceptable salt of Compound
I equivalent to 100 mg of Compound
I.
[0038] Suitable pharmaceutically acceptable salts are, for example, those disclosed in
S. M. Berge, et al. J. Pharmaceutical Sciences, 1977, 66, 1-19. For example, Table 1 of that article provides the following pharmaceutically acceptable
salts:
Table 1:
| Acetate |
Iodide |
Benzathine |
| Benzenesulfonate |
Isethionate |
Chloroprocaine |
| Benzoate |
Lactate |
Choline |
| Bicarbonate |
Lactobionate |
Diethanolamine |
| Bitartrate |
Malate |
Ethylenediamine |
| Bromide |
Maleate |
Meglumine |
| Calcium edetate |
Mandelate |
Procaine |
| Camsylate |
Mesylate |
Aluminum |
| Carbonate |
Methylbromide |
Calcium |
| Chloride |
Methylnitrate |
Lithium |
| Citrate |
Methyl sulfate |
Magnesium |
| Dihydrochloride |
Mucate |
Potassium |
| Edetate |
Napsylate |
Sodium |
| Edisylate |
Nitrate |
Zinc |
| Estolate |
Pamoate (Embonate) |
|
| Esylate |
Pantothenate |
|
| Fumarate |
Phosphate/diphosphate |
|
| Gluceptate |
Polygalacturonate |
|
| Gluconate |
Salicylate |
|
| Glutamate |
Stearate |
|
| Glycollylarsanilate |
Sub acetate |
|
| Hexylresorcinate |
Succinate |
|
| Hydrabamine |
Sulfate |
|
| Hydrobromide |
Tannate |
|
| Hydrochloride |
Tartrate |
|
| Hydroxynaphthoate |
Teociate |
|
| |
Triethiodide |
|
[0039] Non-limiting examples of pharmaceutically acceptable acid addition salts include:
salts formed with inorganic acids, such as hydrochloric acid, hydrobromic acid, phosphoric
acid, sulfuric acid, or perchloric acid; salts formed with organic acids, such as
acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or
malonic acid; and salts formed by using other methods used in the art, such as ion
exchange. Non-limiting examples of pharmaceutically acceptable salts include adipate,
alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate,
camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate,
ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate,
heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate,
laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate,
nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3-phenylpropionate,
phosphate, picrate, pivalate, propionate, stearate, succinate, sulfate, tartrate,
thiocyanate, p-toluenesulfonate, undecanoate, and valerate salts. Pharmaceutically
acceptable salts derived from appropriate bases include alkali metal, alkaline earth
metal, ammonium, and N
+(C
1-4alkyl)
4 salts. This disclosure also envisions the quaternization of any basic nitrogen-containing
groups of the compounds disclosed herein. Suitable non-limiting examples of alkali
and alkaline earth metal salts include sodium, lithium, potassium, calcium, and magnesium.
Further non-limiting examples of pharmaceutically acceptable salts include ammonium,
quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide,
carboxylate, sulfate, phosphate, nitrate, lower alkyl sulfonate and aryl sulfonate.
Other suitable, non-limiting examples of pharmaceutically acceptable salts include
besylate and glucosamine salts.
Combination Therapies
[0040] One aspect disclosed herein provides methods of treating cystic fibrosis and other
CFTR mediated diseases with Compound
I in combination with other pharmaceutically active agents, including CFTR modulating
agents. In some embodiments, Compound
I (and/or at least one pharmaceutically acceptable salt thereof) can be administered
in combination with at least one additional active pharmaceutical ingredient, such
as, e.g., a CFTR modulating agent. In some embodiments, the at least one additional
active pharmaceutical ingredient is chosen from (a) Compound
II and pharmaceutically acceptable salts thereof; and (b) Compound
III or Compound
III-d and pharmaceutically acceptable salts of Compound
III or Compound
III-d. Thus, in some embodiments, the methods of treatment provided herein comprise administering
to a patient in need thereof at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof; and at least one compound chosen from
Compound
II, (Compound
III or
III-d), and pharmaceutically acceptable salts thereof. In some embodiments, the methods
of treatment provided herein comprise administering to a patient in need thereof at
least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof; and at least one compound chosen from
(Compound
III or
III-d), Compound
IV, and/or pharmaceutically acceptable salts thereof.
[0041] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in combination with
at least one compound chosen from Compound
II and pharmaceutically acceptable salts thereof. In some embodiments, at least one
compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in combination with
at least one compound chosen from Compound
III and pharmaceutically acceptable salts thereof. In some embodiments, at least one
compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in combination with
at least one compound chosen from Compound
III-d and pharmaceutically acceptable salts thereof. In some embodiments, at least one
compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in combination with
Compound
II or a pharmaceutically acceptable salt thereof and at least one compound chosen from
Compound
III and pharmaceutically acceptable salts thereof. In some embodiments, at least one
compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in combination with
at least one compound chosen from Compound
II and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
III-d and pharmaceutically acceptable salts thereof.
[0042] Each of Compounds
I, II, and
III or
III-d, and their pharmaceutically acceptable salts thereof independently can be administered
once daily, twice daily, or three times daily. In some embodiments, at least one compound
chosen from Compound
I and pharmaceutically acceptable salts thereof is administered once daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered twice daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof are administered once daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof are administered twice daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
III or
III-d and pharmaceutically acceptable salts thereof are administered once daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
III or
III-d and pharmaceutically acceptable salts thereof are administered twice daily.
[0043] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof, and at least one compound chosen from
Compound
III or
III-d and pharmaceutically acceptable salts thereof are administered once daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
III or
III-d and pharmaceutically acceptable salts thereof, and at least one compound chosen from
Compound
IV and pharmaceutically acceptable salts thereof, are administered once daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof, and at least one compound chosen from
Compound
III or
III-d and pharmaceutically acceptable salts thereof are administered twice daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
III or
III-d and pharmaceutically acceptable salts thereof, and at least one compound chosen from
Compound
IV and pharmaceutically acceptable salts thereof, are administered twice daily.
[0044] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof, are administered once daily and at
least one compound chosen from Compound
III-d and pharmaceutically acceptable salts thereof, are administered twice daily. In some
embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
IV and pharmaceutically acceptable salts thereof, are administered once daily and at
least one compound chosen from Compound
III-d and pharmaceutically acceptable salts thereof, are administered twice daily.
[0045] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in an amount of 5 mg
to 20 mg. In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in an amount of 5 mg,
10 mg, 15 mg, or 20 mg daily. In some embodiments, at least one compound chosen from
Compound
I and pharmaceutically acceptable salts thereof is administered in an amount of 5 mg,
10 mg, or 20 mg once daily. In some embodiments, 5 mg, or 10 mg of Compound
I or an equivalent amount of its pharmaceutically acceptable salts are administered
twice daily.
[0046] Compounds
I, II, (III or
III-d)
, and their pharmaceutically acceptable salts thereof can be administered in a single
pharmaceutical composition or separate pharmaceutical compositions. Such pharmaceutical
compositions can be administered once daily or multiple times daily, such as twice
daily. As used herein, the phrase that a given amount of API (e.g., Compound
I, II, (
III, III-d) or a pharmaceutically acceptable salt thereof) is administered once or twice daily
or per day means that said given amount is administered per dosing once or twice daily.
For example, the phrase that 50 mg of Compound
II or a pharmaceutically acceptable salt thereof is administered twice daily or per
day means that 50 mg of Compound
II or an equivalent amount of a pharmaceutically acceptable salt thereof is administerd
per dosing twice per day (e.g., 50 mg of Compound
II or an equivalent amount of a pharmaceutically acceptable salt thereof is administerd
in the morning and 50 mg of Compound
II or an equivalent amount of a pharmaceutically acceptable salt thereof is administered
in the evening).
[0047] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in a first pharmaceutical
composition; at least one compound chosen from Compound
II and pharmaceutically acceptable salts thereof is administered in a second pharmaceutical
composition; and at least one compound chosen from Compound
III and pharmaceutically acceptable salts thereof is administered in a third pharmaceutical
composition.
[0048] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in a first pharmaceutical
composition; at least one compound chosen from Compound
II and pharmaceutically acceptable salts thereof is administered in a second pharmaceutical
composition; at least one compound chosen from Compound
III-d and pharmaceutically acceptable salts thereof is administered in a third pharmaceutical
composition.
[0049] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in a first pharmaceutical
composition; at least one compound chosen from Compound
III or
III-d and pharmaceutically acceptable salts thereof is administered in a second pharmaceutical
composition; at least one compound chosen from Compound
IV and pharmaceutically acceptable salts thereof is administered in a third pharmaceutical
composition.
[0050] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof is administered in a first pharmaceutical
composition; and at least one compound chosen from Compound
II and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
III or
III-d, and pharmaceutically acceptable salts thereof are administered in a second pharmaceutical
composition. In some embodiments, the second pharmaceutical composition comprises
a half of a daily dose of said at least one compound chosen from Compound
III, III-d, and pharmaceutically acceptable salts thereof, and the other half of said at least
one compound chosen from Compound
III, III-d, and pharmaceutically acceptable salts thereof is administered in a third pharmaceutical
composition.
[0051] In some embodiments, at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof; at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof and at least one compound chosen from
Compound
III, III-d, and pharmaceutically acceptable salts thereof are administered in a first pharmaceutical
composition. In some embodiments, the first pharmaceutical composition is administered
to the patient twice daily. In some embodiments the first pharmaceutical composition
is administered once daily. In some embodiments the first pharmaceutical composition
is administered once daily and a second composition comprising only Compound
III is administered once daily.
[0052] Any suitable pharmaceutical compositions known in the art can be used for Compound
I, Compound
II, Compound
III, Compound
III-d, and pharmaceutically acceptable salts thereof. Some exemplary pharmaceutical compositions
for Compound
I and its pharmaceutically acceptable salts are described in the Examples. Some exemplary
pharmaceutical compositions for Compound
II and its pharmaceutically acceptable salts can be found in
WO 2011/119984 and
WO 2014/014841. Some exemplary pharmaceutical compositions for Compound
III and its pharmaceutically acceptable salts can be found in
WO 2007/134279,
WO 2010/019239,
WO 2011/019413,
WO 2012/027731, and
WO 2013/130669, and some exemplary pharmaceutical compositions for Compound
III-d and its pharmaceutically acceptable salts can be found in
US 8,865,902,
US 9,181,192,
US 9,512,079,
WO 2017/053455, and
WO 2018/080591. Some exemplary pharmaceutical compositions for Compound
IV and its pharmaceutically acceptable salts can be found in
WO 2010/037066,
WO 2011/127241, and
WO 2014/071122.
[0053] In some embodiments, a pharmaceutical composition comprising at least one compound
chosen from Compound
I and pharmaceutically acceptable salts thereof is administered with a pharmaceutical
composition comprising Compound
II and Compound
III or
III-d. Pharmaceutical compositions comprising Compound
II and Compound
III are disclosed in
PCT Publication No. WO 2015/160787. An exemplary embodiment is shown in Table 2.
Table 2. Exemplary Tablet Comprising 100 mg of Compound II and 150 mg of Compound
III.
| |
Ingredient |
Amount per tablet (mg) |
| Intra-granular |
Compound II SDD (spray dried dispersion) |
125 |
| (80 wt % Compound II; 20 wt % HPMC) |
| |
Compound III SDD |
187.5 |
| (80 wt % Compound III; 19.5 wt% HPMCAS-HG; 0.5 wt% sodium lauryl sulfate) |
| |
Microcrystalline cellulose |
131.4 |
| |
Croscarmellose Sodium |
29.6 |
| |
Total |
473.5 |
| Extra-granular |
Microcrystalline cellulose |
112.5 |
| |
Magnesium Stearate |
5.9 |
| |
Total |
118.4 |
| Total uncoated Tablet |
|
591.9 |
| Film coat |
Opadry |
17.7 |
| Total coated Tablet |
|
609.6 |
[0054] In some embodiments, a pharmaceutical composition comprising Compound
I is administered with a pharmaceutical composition comprising Compound
III or
III-d. Pharmaceutical compositions comprising Compound
III are disclosed in PCT Publication No.
WO 2010/019239. An exemplary embodiment is shown in Table 3 below.
Table 3: Ingredients for Exemplary Tablet of Compound III.
| Tablet Formulation |
Percent Dose %Wt./Wt. |
Dose (mg) |
Batch (g) |
| Compound III SDD |
34.09% |
187.5 |
23.86 |
| (80 wt % Compound III; 19.5 wt% HPMCAS-HG; 0.5 wt% sodium lauryl sulfate) |
| Microcrystalline cellulose |
30.51% |
167.8 |
21.36 |
| Lactose |
30.40% |
167.2 |
21.28 |
| Sodium croscarmellose |
3.000% |
16.50 |
2.100 |
| SLS |
0.500% |
2.750 |
0.3500 |
| Colloidal silicon dioxide |
0.500% |
2.750 |
0.3500 |
| Magnesium stearate |
1.000% |
5.500 |
0.7000 |
| Total |
100% |
550 |
70 |
[0055] Additional pharmaceutical compositions comprising Compound
III are disclosed in
PCT Publication No. WO 2013/130669. Exemplary mini-tablets (~2 mm diameter, ~2 mm thickness, each mini-tablet weighing
about 6.9 mg) was formulated to have approximately 50 mg of Compound
III per 26 mini-tablets and approximately 75 mg of Compound
III per 39 mini-tablets using the amounts of ingredients recited in Table 4.
Table 4: Ingredients for mini-tablets for 50 mg and 75 mg potency
| Tablet Formulation |
Percent Dose %Wt./Wt. |
Dose (mg) 50 mg potency |
Dose (mg) 75 mg potency |
Batch (g) |
| Compound III SDD (80 wt % Compound III; 19.5 wt% HPMCAS-HG; 0.5 wt% sodium lauryl sulfate) |
35 |
62.5 |
93.8 |
1753.4 |
| Mannitol |
13.5 |
24.1 |
36.2 |
675.2 |
| Lactose |
41 |
73.2 |
109.8 |
2050.2 |
| Sucralose |
2.0 |
3.6 |
5.4 |
100.06 |
| Croscarmellose sodium |
6.0 |
10.7 |
16.1 |
300.1 |
| Colloidal silicon dioxide |
1.0 |
1.8 |
2.7 |
50.0 |
| Magnesium stearate |
1.5 |
2.7 |
4.0 |
74.19 |
| Total |
100 |
178.6 |
268 |
5003.15 |
[0056] In some embodiments, a pharmaceutical composition comprising Compound
I is administered with a pharmaceutical composition comprising Compound
III and Compound
IV. Pharmaceutical compositions comprising Compound
III and Compound
IV are disclosed in PCT Publication No.
WO 2014/071122. An exemplary embodiment is shown in Table 5 below.
Table 5: Ingredients for Exemplary Tablet of Compound III and Compound IV
| Tablet Formulation |
Percent Dose |
Dose (mg) |
| %Wt./Wt. |
200 mg potency |
| Compound IV Form I |
35 |
200 |
| Compound III SDD |
28 |
156 |
| (80 wt % Compound III; 19.5 wt% HPMCAS-HG; 0.5 wt% sodium lauryl sulfate) |
| Microcrystalline cellulose |
26 |
150 |
| Croscarmellose sodium |
6 |
34 |
| Sodium lauryl sulfate |
1 |
4 |
| Polyvinylpyrrolidone |
3 |
15 |
| Magnesium stearate |
1 |
6 |
[0057] In some embodiments, the pharmaceutical compositions employed in the combination
therapies of the disclosure are tablets. In some embodiments, the tablets are suitable
for oral administration. These compositions and combinations are useful for treating
cystic fibrosis.
Methods of Treatment
[0058] A CFTR mutation may affect the CFTR quantity, i.e., the number of CFTR channels at
the cell surface, or it may impact CFTR function, i.e., the functional ability of
each channel to open and transport ions. Mutations affecting CFTR quantity include
mutations that cause defective synthesis (Class I defect), mutations that cause defective
processing and trafficking (Class II defect), mutations that cause reduced synthesis
of CFTR (Class V defect), and mutations that reduce the surface stability of CFTR
(Class VI defect). Mutations that affect CFTR function include mutations that cause
defective gating (Class III defect) and mutations that cause defective conductance
(Class IV defect). Some CFTR mutations exhibit characteristics of multiple classes.
[0059] In some embodiments, disclosed herein methods of treating, lessening the severity
of, or symptomatically treating cystic fibrosis in a patient comprising administering
an effective amount of a compound, pharmaceutically acceptable salt thereof, or a
deuterated analog of any of the foregoing; or a pharmaceutical composition, of this
disclosure to a patient, such as a human, wherein said patient has cystic fibrosis.
In some embodiments, the patient has an F508del/minimal function (MF) genotype, F508del/F508del
genotype (homozygous for the F508del mutation), F508del/gating genotype, or F508del/residual
function (RF) genotype. In some embodiments the patient is heterozygous and has one
F508del mutation.
[0060] As used herein, "minimal function (MF) mutations" refer to CFTR gene mutations associated
with minimal CFTR function (little-to-no functioning CFTR protein) and include, for
example, mutations associated with severe defects in ability of the CFTR channel to
open and close, known as defective channel gating or "gating mutations"; mutations
associated with severe defects in the cellular processing of CFTR and its delivery
to the cell surface; mutations associated with no (or minimal) CFTR synthesis; and
mutations associated with severe defects in channel conductance.
[0061] In some embodiments, the patient is heterozygous and has an F508del mutation on one
allele and a mutation on the other allele selected from Table 6:
Table 6: CFTR Mutations
| Mutation |
| Q2X |
L218X |
Q525X |
R792X |
E1104X |
| S4X |
Q220X |
G542X |
E822X |
W1145X |
| W19X |
Y275X |
G550X |
W882X |
R1158X |
| G27X |
C276X |
Q552X |
W846X |
R1162X |
| Q39X |
Q290X |
R553X |
Y849X |
S1196X |
| W57X |
G330X |
E585X |
R851X |
W1204X |
| E60X |
W401X |
G673X |
Q890X |
L1254X |
| R75X |
Q414X |
Q685X |
S912X |
S1255X |
| L88X |
S434X |
R709X |
Y913X |
W1282X |
| E92X |
S466X |
K710X |
Q1042X |
Q1313X |
| Q98X |
S489X |
Q715X |
W1089X |
Q1330X |
| Y122X |
Q493X |
L732X |
Y1092X |
E1371X |
| E193X |
W496X |
R764X |
W1098X |
Q1382X |
| W216X |
C524X |
R785X |
R1102X |
Q1411X |
| 185+1G→T |
711+5G→7A |
1717-8G→A |
2622+1G→A |
3121-1G→A |
| 296+1G→A |
712-1G→T |
1717-1G→A |
2790-1G→C |
3500-2A→G |
| 296+1G→T |
1248+1G→A |
1811+1G→C |
3040G→C |
3600+2insT |
| 405+1G→A |
1249-1G→A |
1811+1.6kbA→G |
(G970R) |
3850-1G→A |
| 405+3A→C |
1341+1G→A |
1811+1643G→T |
3120G→A |
4005+1G→A |
| 406-1G→A |
1525-2A→G |
1812-1G→A |
3120+1G→A |
4374+1G→T |
| 621+1G→T |
1525-1G→A |
1898+1G→A |
3121-2A→G |
|
| 711+1G→T |
|
1898+1G→C |
|
|
| 182delT |
1078delT |
1677delTA |
2711delT |
3737delA |
| 306insA |
1119delA |
1782delA |
2732insA |
3791delC |
| 306delTAGA |
1138insG |
1824delA |
2869insG |
3821delT |
| 365-366insT |
1154insTC |
1833delT |
2896insAG |
3876delA |
| 394delTT |
1161delC |
2043delG |
2942insT |
3878delG |
| 442delA |
1213delT |
2143delT |
2957delT |
3905insT |
| 444delA |
1259insA |
2183AA→G |
3007delG |
4016insT |
| 457TAT→G |
1288insTA |
2184delA |
3028delA |
4021dupT |
| 541delC |
1343delG |
2184insA |
3171delC |
4022insT |
| 574delA |
1471delA |
2307insA |
3171insC |
4040delA |
| 663delT |
1497delGG |
2347delG |
3271delGG |
4279insA |
| 849delG |
1548delG |
2585delT |
3349insT |
4326delTC |
| 935delA |
1609del CA |
2594delGT |
3659delC |
|
| CFTRdele1 |
CFTRdele16-17b |
1461ins4 |
| CFTRdele2 |
CFTRdele17a, 17b |
1924del7 |
| CFTRdele2,3 |
CFTRdele17a-18 |
2055de19→A |
| CFTRdele2-4 |
CFTRdele19 |
2105-2117dell3insAGAAA |
| CFTRdele3-10,14b-16 |
CFTRdele19-21 |
2372del8 |
| CFTRdele4-7 |
CFTRdele21 |
2721del11 |
| CFTRdele4-11 |
CFTRdele22-24 |
2991del32 |
| CFTR50kbdel |
CFTRdele22,23 |
3667ins4 |
| CFTRdup6b-10 |
124del23bp |
4010del4 |
| CFTRdele11 |
602del14 |
4209TGTT→AA |
| CFTRdele13,14a |
852del22 |
|
| CFTRdelel4b-17b |
991del5 |
|
| A46D |
V520F |
Y569D |
N1303K |
| G85E |
A559T |
L1065P |
|
| R347P |
R560T |
R1066C |
|
| L467P |
R560S |
L1077P |
|
| I507del |
A561E |
M1101K |
|
[0062] In some embodiments, the disclosure also is directed to methods of treatment using
isotope-labelled compounds of the afore-mentioned compounds, which, in some embodiments,
are referred to as Compound
I', Compound
II', Compound
III', Compound
III-d. In some embodiments, Compound
I', Compound
II', Compound
III', Compound
III-d, or pharmaceutically acceptable salts thereof, wherein the formula and variables of
such compounds and salts are each and independently as described above or any other
embodiments described above, provided that one or more atoms therein have been replaced
by an atom or atoms having an atomic mass or mass number which differs from the atomic
mass or mass number of the atom which usually occurs naturally (isotope labelled).
Examples of isotopes which are commercially available and suitable for the disclosure
include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, fluorine and chlorine,
for example
2H,
3H,
13C,
14C,
15N,
18O,
17O,
31P,
32P,
35S,
18F and
36Cl, respectively.
[0063] The isotope-labelled compounds and salts can be used in a number of beneficial ways.
They can be suitable for medicaments and/or various types of assays, such as substrate
tissue distribution assays. For example, tritium (
3H)- and/or carbon-14 (
14C)-labelled compounds are particularly useful for various types of assays, such as
substrate tissue distribution assays, due to relatively simple preparation and excellent
detectability. For example, deuterium (
2H)-labelled ones are therapeutically useful with potential therapeutic advantages
over the non-
2H-labelled compounds. In general, deuterium (
2H)-labelled compounds and salts can have higher metabolic stability as compared to
those that are not isotope-labelled owing to the kinetic isotope effect described
below. Higher metabolic stability translates directly into an increased in vivo half-life
or lower dosages, which could be desired. The isotope-labelled compounds and salts
can usually be prepared by carrying out the procedures disclosed in the synthesis
schemes and the related description, in the example part and in the preparation part
in the present text, replacing a non-isotope-labelled reactant by a readily available
isotope-labelled reactant.
[0064] In some embodiments, the isotope-labelled compounds and salts are deuterium (
2H)-labelled ones. In some specific embodiments, the isotope-labelled compounds and
salts are deuterium (
2H)-labelled, wherein one or more hydrogen atoms therein have been replaced by deuterium.
In chemical structures, deuterium is represented as "D."
[0065] The deuterium (
2H)-labelled compounds and salts can manipulate the oxidative metabolism of the compound
by way of the primary kinetic isotope effect. The primary kinetic isotope effect is
a change of the rate for a chemical reaction that results from exchange of isotopic
nuclei, which in turn is caused by the change in ground state energies necessary for
covalent bond formation after this isotopic exchange. Exchange of a heavier isotope
usually results in a lowering of the ground state energy for a chemical bond and thus
causes a reduction in the rate-limiting bond breakage. If the bond breakage occurs
in or in the vicinity of a saddle-point region along the coordinate of a multi-product
reaction, the product distribution ratios can be altered substantially. For explanation:
if deuterium is bonded to a carbon atom at a non-exchangeable position, rate differences
of k
M/k
D = 2-7 are typical. For a further discussion, see
S. L. Harbeson and R. D. Tung, Deuterium In Drug Discovery and Development, Ann. Rep.
Med. Chem. 2011, 46, 403-417.
[0066] The concentration of the isotope(s) (e.g., deuterium) incorporated into the isotope-labelled
compounds and salt of the disclosure may be defined by the isotopic enrichment factor.
The term "isotopic enrichment factor" as used herein means the ratio between the isotopic
abundance and the natural abundance of a specified isotope. In some embodiments, if
a substituent in a compound of the disclosure is denoted deuterium, such compound
has an isotopic enrichment factor for each designated deuterium atom of at least 3500
(52.5% deuterium incorporation at each designated deuterium atom), at least 4000 (60%
deuterium incorporation), at least 4500 (67.5% deuterium incorporation), at least
5000 (75% deuterium incorporation), at least 5500 (82.5% deuterium incorporation),
at least 6000 (90% deuterium incorporation), at least 6333.3 (95% deuterium incorporation),
at least 6466.7 (97% deuterium incorporation), at least 6600 (99% deuterium incorporation),
or at least 6633.3 (99.5% deuterium incorporation).
[0067] When discovering and developing therapeutic agents, the person skilled in the art
attempts to optimize pharmacokinetic parameters while retaining desirable in vitro
properties. It may be reasonable to assume that many compounds with poor pharmacokinetic
profiles are susceptible to oxidative metabolism.
Pharmaceutical Compositions
[0068] Another aspect of the disclosure provides pharmaceutical compositions comprising
Compound
I or a pharmaceutically acceptable salt thereof and at least one additional active
pharmaceutical ingredient. In some embodiments, the at least one additional active
pharmaceutical ingredient is a CFTR modulator. In some embodiments, the at least one
additional active pharmaceutical ingredient is a CFTR corrector. In some embodiments,
the at least one additional active pharmaceutical ingredient is a CFTR potentiator.
In some embodiments, the pharmaceutical composition comprises Compound
I and at least two additional active pharmaceutical ingredients, one of which is a
CFTR corrector and one of which is a CFTR potentiator.
[0069] In some embodiments, at least one additional active pharmaceutical ingredient is
selected from mucolytic agents, bronchodilators, antibiotics, anti-infective agents,
and anti-inflammatory agents.
[0070] In some embodiments, the disclosure provides a pharmaceutical composition comprising
at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, and at least one pharmaceutically
acceptable carrier.
[0071] In some embodiments, the disclosure provides a pharmaceutical composition comprising
5 mg to 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof, and at least one pharmaceutically
acceptable carrier.
[0072] In some embodiments, the disclosure provides a pharmaceutical composition comprising
5 mg to 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
III, III-d, and pharmaceutically acceptable salts thereof, and at least one pharmaceutically
acceptable carrier.
[0073] In some embodiments, the disclosure provides a pharmaceutical composition comprising
5 mg to 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
III and pharmaceutically acceptable salts thereof, and at least one pharmaceutically
acceptable carrier.
[0074] In some embodiments, the disclosure provides a pharmaceutical composition comprising
5 mg to 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
II and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
III-d and pharmaceutically acceptable salts thereof, and at least one pharmaceutically
acceptable carrier.
[0075] In some embodiments, the disclosure provides a pharmaceutical composition comprising
5 mg to 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
III or
III-d and pharmaceutically acceptable salts thereof, at least one compound chosen from
Compound
IV and pharmaceutically acceptable salts thereof, and at least one pharmaceutically
acceptable carrier.
[0076] In some embodiments, the disclosure provides a pharmaceutical composition comprising
5 mg to 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, and optionally comprise one or more
additional CFTR modulating agents. In some embodiments, the composition comprises
about 5 mg, about 10 mg, or about 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, and optionally comprise one or more
additional CFTR modulating agents. In some embodiments, the composition comprises
5 mg to 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, 50 mg to 100 mg of Compound
II, and 150 mg to 300 mg of Compound
III or 50 mg to 150 mg of Compound
III-d. In some embodiments the composition comprises about 5 mg to 20 mg of at least one
compound chosen from Compound I and pharmaceutically acceptable salts thereof, 100
mg of Compound
II, and 150 mg of Compound
III or 150 mg of Compound
III-d.
[0077] In some embodiments, the disclosure provides a pharmaceutical composition comprising
5 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, and optionally comprise one or more
additional CFTR modulating agents. In some embodiments, the composition comprises
about 10 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, and optionally comprise one or more
additional CFTR modulating agents. In some embodiments, the disclosure provides a
pharmaceutical composition comprising 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, and optionally comprise one or more
additional CFTR modulating agents. In some embodiments, the composition comprises
5 mg, 10 mg, or 20 mg of at least one compound chosen from Compound
I and pharmaceutically acceptable salts thereof, 50 mg or 100 mg of Compound
II, and 150 mg or 300 mg of Compound
III or 50 mg, 75 mg, 100 mg, 125 mg, or 150 mg of Compound
III-d.
[0078] A pharmaceutical composition may further comprise at least one pharmaceutically acceptable
carrier. In some embodiments, the at least one pharmaceutically acceptable carrier
is chosen from pharmaceutically acceptable vehicles and pharmaceutically acceptable
adjuvants. In some embodiments, the at least one pharmaceutically acceptable is chosen
from pharmaceutically acceptable fillers, disintegrants, surfactants, binders, lubricants.
[0079] The pharmaceutical compositions described herein are useful for treating cystic fibrosis
and other CFTR mediated diseases.
[0080] As described above, pharmaceutical compositions disclosed herein may optionally further
comprise at least one pharmaceutically acceptable carrier. The at least one pharmaceutically
acceptable carrier may be chosen from adjuvants and vehicles. The at least one pharmaceutically
acceptable carrier, as used herein, includes any and all solvents, diluents, other
liquid vehicles, dispersion aids, suspension aids, surface active agents, isotonic
agents, thickening agents, emulsifying agents, preservatives, solid binders, and lubricants,
as suited to the particular dosage form desired.
Remington: The Science and Practice of Pharmacy, 21st edition, 2005, ed. D.B. Troy,
Lippincott Williams & Wilkins, Philadelphia, and
Encyclopedia of Pharmaceutical Technology, eds. J. Swarbrick and J. C. Boylan, 1988-1999,
Marcel Dekker, New York discloses various carriers used in formulating pharmaceutical compositions and known
techniques for the preparation thereof. Except insofar as any conventional carrier
is incompatible with the compounds of this disclosure, such as by producing any undesirable
biological effect or otherwise interacting in a deleterious manner with any other
component(s) of the pharmaceutical composition, its use is contemplated to be within
the scope of this disclosure. Non-limiting examples of suitable pharmaceutically acceptable
carriers include, but are not limited to, ion exchangers, alumina, aluminum stearate,
lecithin, serum proteins (such as human serum albumin), buffer substances (such as
phosphates, glycine, sorbic acid, and potassium sorbate), partial glyceride mixtures
of saturated vegetable fatty acids, water, salts, and electrolytes (such as protamine
sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride,
and zinc salts), colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, polyacrylates,
waxes, polyethylene-polyoxypropylene-block polymers, wool fat, sugars (such as lactose,
glucose and sucrose), starches (such as corn starch and potato starch), cellulose
and its derivatives (such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose
acetate), powdered tragacanth, malt, gelatin, talc, excipients (such as cocoa butter
and suppository waxes), oils (such as peanut oil, cottonseed oil, safflower oil, sesame
oil, olive oil, corn oil and soybean oil), glycols (such as propylene glycol and polyethylene
glycol), esters (such as ethyl oleate and ethyl laurate), agar, buffering agents (such
as magnesium hydroxide and aluminum hydroxide), alginic acid, pyrogen-free water,
isotonic saline, Ringer's solution, ethyl alcohol, phosphate buffer solutions, non-toxic
compatible lubricants (such as sodium lauryl sulfate and magnesium stearate), coloring
agents, releasing agents, coating agents, sweetening agents, flavoring agents, perfuming
agents, preservatives, and antioxidants.
Methods of Preparing Compounds
General Experimental Procedures
[0081] Reagents and starting materials were obtained by commercial sources unless otherwise
stated and were used without purification. Proton and carbon NMR spectra were acquired
on either of a Bruker Biospin DRX 400 MHz FTNMR spectrometer operating at a
1H and
13C resonant frequency of 400 and 100 MHz respectively, or on a 300 MHz NMR spectrometer.
One dimensional proton and carbon spectra were acquired using a broadband observe
(BBFO) probe with 20 Hz sample rotation at 0.1834 and 0.9083 Hz/Pt digital resolution
respectively. All proton and carbon spectra were acquired with temperature control
at 30 °C using standard, previously published pulse sequences and routine processing
parameters. Final purity of compounds was determined by reversed phase UPLC using
an Acquity UPLC BEH C
18 column (50 × 2.1 mm, 1.7 µm particle) made by Waters (pn: 186002350), and a dual
gradient run from 1-99% mobile phase B over 3.0 minutes. Mobile phase A = H
2O (0.05 % CF
3CO
2H). Mobile phase B = CH
3CN (0.035 % CF
3CO
2H). Flow rate = 1.2 mL/min, injection volume = 1.5 µL, and column temperature = 60
°C. Final purity was calculated by averaging the area under the curve (AUC) of two
UV traces (220 nm, 254 nm). Low-resolution mass spectra were obtained using a single
quadrupole mass spectrometer with a mass accuracy of 0.1 Da and a minimum resolution
of 1000 amu across the detection range using electrospray ionization (ESI) using the
hydrogen ion (H
+). Optical purity of methyl (2S)-2,4-dimethyl-4-nitro-pentanoate was determined using
chiral gas chromatography (GC) analysis on an Agilent 7890A/MSD 5975C instrument,
using a Restek Rt-βDEXcst (30m × 0.25mm × 0.25um_df) column, with a 2.0 mL/min flow
rate (H
2 carrier gas), at an injection temperature of 220°C and an oven temperature of 120°C,
15 minutes. Purity of Compound
I was determined by reverse phase HPLC using an Poroshell 120 EC-C8 column (4.6 × 150
mm, 2.7 µm particle, and a dual gradient run from 30-95% mobile phase B over 40 minutes.
Mobile phase A = 5 mM Ammonium Acetate pH 4.50 and Mobile phase B = Acetonitrile.
Flow rate = 1.0 mL/min, injection volume = 5 µL, 254 nm, and column temperature =
30 °C.
Example 1: Synthesis of (14S)-8-[3-(2-{dispiro[2.0.2.1]heptan-7-yl}ethoxy)-1H-pyrazol-1-yl]-12,12-dimethyl-2λ6-thia-3,9,11,18,23-pentaazatetracyclo
[17.3.1.111,14.05,10]tetracosa-1(22),5,7,9,19(23),20-hexaene-2,2,4-trione (Compound
I)
General UPLC/HPLC Analytical Methods:
[0083] Unless indicated, yields of enantiomers separated by chiral SFC are given as a percentage
of the theoretical yield for a single enantiomer of the racemate.
[0084] LC Method A: Analytical reverse phase UPLC using an Acquity UPLC BEH C
18 column (30 × 2.1 mm, 1.7 µm particle) made by Waters (pn: 186002349), and a dual
gradient run from 1-99% mobile phase B over 1.2 minutes. Mobile phase A = water (0.05%
trifluoroacetic acid). Mobile phase B = acetonitrile (0.035% trifluoroacetic acid).
Flow rate = 1.5 mL/min, injection volume = 1.5 µL, and column temperature = 60 °C.
[0085] LC Method B: Analytical reverse phase UPLC using an Acquity UPLC BEH C
18 column (50 × 2.1 mm, 1.7 µm particle) made by Waters (pn: 186002350), and a dual
gradient run from 1-99% mobile phase B over 3.0 minutes. Mobile phase A = water (0.05%
trifluoroacetic acid). Mobile phase B = acetonitrile (0.035% trifluoroacetic acid).
Flow rate = 1.2 mL/min, injection volume = 1.5 µL, and column temperature = 60 °C.
[0086] LC Method D: Analytical reverse phase UPLC using an Acquity UPLC BEH C
18 column (50 × 2.1 mm, 1.7 µm particle) made by Waters (pn: 186002350), and a dual
gradient run from 1-99% mobile phase B over 5.0 minutes. Mobile phase A = water (0.05%
trifluoroacetic acid). Mobile phase B = acetonitrile (0.035% trifluoroacetic acid).
Flow rate = 1.2 mL/min, injection volume = 1.5 µL, and column temperature = 60 °C.
[0087] LC Method F: Analytical reverse phase UPLC using an Acquity UPLC BEH C
18 column (50 × 2.1 mm, 1.7 µm particle) made by Waters (pn: 186002350), and a dual
gradient run from 1-99% mobile phase B over 15.0 minutes. Mobile phase A = water (0.05%
trifluoroacetic acid). Mobile phase B = acetonitrile (0.035% trifluoroacetic acid).
Flow rate = 1.2 mL/min, injection volume = 1.5 µL, and column temperature = 60 °C.
[0088] LC Method Q: Merckmillipore Chromolith SpeedROD C
18 column (50 × 4.6 mm) and a dual gradient run from 5 - 100% mobile phase B over 12
minutes. Mobile phase A = water (0.1 % trifluoroacetic acid). Mobile phase B = acetonitrile
(0.1 % trifluoroacetic acid).
Part A: Synthesis of 2-Chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxylic
acid
[0089]

Step 1: 7-(Bromomethyl)dispiro[2.0.2.1]heptane
[0090]

[0091] A 1000 mL, 3-neck round bottom flask was fitted with a mechanical stirrer, a cooling
bath, an addition funnel, a J-Kem temperature probe and a nitrogen inlet/outlet. The
vessel was charged under a nitrogen atmosphere with triphenylphosphine (102.7 mL,
443.2 mmol) and dichloromethane (1 L) which provided a clear colorless solution. Stirring
was commenced and the cooling bath was charged with acetone. Dry ice was added in
portions to the cooling bath until a pot temperature of -15 °C was obtained. The addition
funnel was charged with a solution of bromine (22.82 mL, 443.0 mmol) in dichloromethane
(220 mL, 10 mL/g) which was subsequently added dropwise over 1 h. Dry ice was added
in portions to the cooling bath during the addition to maintain the pot temperature
at -15 °C. After the addition of bromine was completed, the pale yellow suspension
was continued to stir at -15 °C for 15 min at which point the suspension was cooled
to -30 °C. The addition funnel was charged with a solution of dispiro[2.0.2.1]heptan-7-yl
methanol (50 g, 402.6 mmol), pyridine (35.82 mL, 442.9 mmol) and dichloromethane (250
mL, 5 mL/g). The clear pale yellow solution was then added dropwise over 1.5 h maintaining
the pot temperature at -30 °C. The resulting clear light yellow reaction mixture was
allowed to gradually warm to a pot temperature of -5 °C and then continued to stir
at -5 °C for 1 h. The reaction mixture then was poured into hexane (2000 mL) which
resulted in the formation of a precipitate. The suspension was stirred at room temperature
for 30 min and then filtered through a glass frit Buchner funnel with a 20 mm layer
of celite. The clear filtrate was concentrated under reduced pressure (water bath
temperature at 20 °C) to provide a yellow oil with some precipitate present. The oil
was diluted with some hexane, allowed to stand at room temperature for 15 min and
then filtered through a glass frit Buchner funnel with a 20 mm layer of celite. The
clear filtrate was concentrated under reduced pressure (water bath temperature at
20 °C) to provide 7-(bromomethyl)dispiro[2.0.2.1]heptane (70 g, 93%) as a clear yellow
oil. 1H NMR (400 MHz, Chloroform-d) δ 3.49 (d, J = 7.5 Hz, 2H), 1.90 (t, J = 7.5 Hz,
1H), 1.06 - 0.84 (m, 4H), 0.71 (ddd, J = 9.1, 5.1, 4.0 Hz, 2H), 0.54 (dddd, J = 8.6,
4.8, 3.8, 1.0 Hz, 2H).
Step 2: 2-Dispiro[2.0.2.1]heptan-7-ylacetonitrile
[0092]

[0093] A 1000 mL, 3-neck round bottom flask was fitted with a mechanical stirrer, a cooling
bath used as secondary containment, a J-Kem temperature probe and a nitrogen inlet/outlet.
The vessel was charged under a nitrogen atmosphere with 7-(bromomethyl)dispiro[2.0.2.1]heptane
(35 g, 187.1 mmol) and dimethyl sulfoxide (245 mL) which provided a clear amber solution.
Stirring was commenced and the pot temperature was recorded at 19 °C. The vessel was
then charged with sodium cyanide (11.46 g, 233.8 mmol) added as a solid in one portion
which resulted in a dark solution and a gradual exotherm to 49 °C over 15 min. After
a few min the pot temperature began to decrease and the mixture was continued to stir
at room temperature overnight (about 15 h). The dark reaction mixture was quenched
with ice cold saturated sodium carbonate solution (500 mL) and then transferred to
a separatory funnel and partitioned with diethyl ether (500 mL). The organic was removed
and the residual aqueous was extracted with diethyl ether (2 × 250 mL). The combined
organics were washed with water (500 mL), dried over sodium sulfate (200 g) and then
filtered through a glass frit Buchner funnel. The clear amber filtrate was concentrated
under reduced pressure (water bath temperature 20 °C) to provide 2-dispiro[2.0.2.1]heptan-7-ylacetonitrile
(21 g, 84%) as a clear dark amber oil. 1H NMR (400 MHz, Chloroform-d) δ 2.42 (d, J
= 6.6 Hz, 2H), 1.69 (t, J = 6.6 Hz, 1H), 1.02 - 0.88 (m, 4H), 0.79 - 0.70 (m, 2H),
0.66 - 0.55 (m, 2H).
Step 3: 2-Dispiro[2.0.2.1]heptan-7-ylacetic acid
[0094]

[0095] To a solution of 2-dispiro[2.0.2.1]heptan-7-ylacetonitrile (2.1 g, 14.19 mmol) in
EtOH (32 mL) was added sodium hydroxide (5.12 g, 128.0 mmol) followed by water (13
mL) and the resulting solution was stirred and heated to 70 °C overnight. The mixture
was then cooled to room temperature, diluted with water and extracted with diethyl
ether. The aqueous phase was adjusted to pH = 1 by the addition of 6 N hydrochloric
acid (resulting in a cloudy precipitate) and extracted with diethyl ether (3X). The
organic phases were dried (magnesium sulfate), filtered and concentrated giving 2-dispiro[2.0.2.1]heptan-7-ylacetic
acid (2.19 g, 99% yield, 98% purity) as an orange solid which was used in the next
step without further purification. 1H NMR (400 MHz, Chloroform-d) δ 2.44 (d, J = 6.9
Hz, 2H), 1.67 (t, J = 6.9 Hz, 1H), 0.91 (ddd, J = 9.0, 5.2, 3.9 Hz, 2H), 0.81 (dddd,
J = 8.9, 5.2, 3.9, 0.5 Hz, 2H), 0.69 (ddd, J = 8.9, 5.2, 3.9 Hz, 2H), 0.56 - 0.44
(m, 2H).
Step 4: 2-Dispiro[2.0.2.1]heptan-7-ylethanol
[0096]

[0097] To lithium aluminum hydride (827.4 mg, 902.3 µL, 21.80 mmol) dissolved in tetrahydrofuran
(33.71 mL) cooled in an ice/water bath was added 2-dispiro[2.0.2.1]heptan-7-ylacetic
acid (2.552 g, 16.77 mmol) in tetrahydrofuran (7.470 mL) dropwise over 15 min keeping
the reaction temperature < 20 °C. The mixture was allowed to stir a total of 18 h,
gradually warming to ambient temperature. The mixture was cooled with an ice/water
bath and sequentially quenched with slow addition of water (838.4 mg, 838.4 µL, 46.54
mmol), followed by sodium hydroxide (1.006 mL of 5 M, 5.031 mmol), then water (2.493
g, 2.493 mL, 138.4 mmol) affording a white, granular slurry which was filtered over
celite. Washed the filtered solid with diethyl ether. The filtrate was concentrated
in vacuo at ~ 300 mbar and 30 °C water bath. Diluted the residue with diethyl ether, dried
(magnesium sulfate), filtered and concentrated
in vacuo at ~ 300 mbar and 30 °C water bath followed by ~ 30 seconds under vacuum to give
2-dispiro[2.0.2.1]heptan-7-ylethanol (2.318 g, 100%) which was used directly in the
ensuing step without further purification. 1H NMR (400 MHz, Chloroform-d) δ 3.64 (s,
2H), 1.68 (d, J = 6.7 Hz, 2H), 1.39 (s, 1H), 1.31 (s, 1H), 0.82 (d, J = 14.0 Hz, 4H),
0.65 (s, 2H), 0.50 (d, J = 3.6 Hz, 2H).
Step 5: tert-Butyl 3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazole-1-carboxylate
[0098]

[0099] To a solution of
tert-butyl 5-oxo-1H-pyrazole-2-carboxylate (2.942 g, 15.97 mmol) and 2-dispiro[2.0.2.1]heptan-7-ylethanol
(2.318 g, 16.77 mmol) in tetrahydrofuran (36.78 mL) was added triphenylphosphine (4.399
g, 16.77 mmol). To the mixture was slowly added diisopropyl azodicarboxylate (3.391
g, 3.302 mL, 16.77 mmol) dropwise over 10 min (mild exotherm noted). The reaction
mixture was stirred at room temperature for 30 min then at 50 °C for 30 min. The tetrahydrofuran
was removed
in vacuo. To the crude residue was added toluene (23.54 mL) and the mixture was stirred overnight
as a precipitate gradually crystallized. Slurried with Celite then the precipitate
was filtered off and washed with toluene (8.705 mL) and again with toluene (8.705
mL). The filtrate was concentrated
in vacuo. The crude product was purified by silica gel chromatography using a shallow gradient
from 100% hexanes to 100% ethyl acetate giving
tert-butyl 3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazole-1-carboxylate (3.449 g, 71%).
ESI-MS m/z calc. 304.17868, found 305.1 (M+1)+; Retention time: 0.82 min (LC Method
A).
Step 6: 3-(2-Dispiro[2.0.2.1]heptan-7-ylethoxy)-1H-pyrazole
[0100]
tert-Butyl 3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazole-1-carboxylate (5.304 g, 17.43
mmol) was dissolved in dichloromethane (53.04 mL) with trifluoroacetic acid (29.81
g, 20.14 mL, 261.4 mmol) and the reaction was stirred at room temperature for 120
min. The reaction was evaporated and the resulting oil was partitioned between ethyl
acetate and a saturated sodium bicarbonate solution and the layers separated. The
aqueous portion was extracted two additional times with ethyl acetate, then the organics
were combined, washed with brine, dried over sodium sulfate, filtered and evaporated
to give an oil, 3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)-1H-pyrazole (3.56 g, 100%).
ESI-MS m/z calc. 204.12627, found 205.1 (M+1)+; Retention time: 0.59 min (LC Method
A).
Step 7: tert-Butyl 2-chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxylate
[0101]
tert-Butyl 2,6-dichloropyridine-3-carboxylate (4.322 g, 17.42 mmol), 3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)-1H-pyrazole
(3.559 g, 17.42 mmol) and potassium carbonate (2.891 g, 20.92 mmol) were combined
in anhydrous dimethyl sulfoxide (71.18 mL). 1,4-Diazabicyclo[2.2.2]octane (391.1 mg,
3.487 mmol) was added and the mixture was stirred at room temperature under nitrogen
for 16 h. The reaction mixture was diluted with water (136.9 mL) and stirred for 15
min. The resulting white solid was filtered and washed with water. The solid was dissolved
in dichloromethane and dried over magnesium sulfate. The mixture was filtered and
evaporated to give
tert-butyl 2-chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxylate
(5.69 g, 79%) as a white solid. 1H NMR (400 MHz, Chloroform-d) δ 8.35 (d, J = 2.9
Hz, 1H), 8.18 (d, J = 8.4 Hz, 1H), 7.69 (d, J = 8.4 Hz, 1H), 5.94 (d, J = 2.9 Hz,
1H), 4.25 (s, 2H), 1.90 (d, J = 6.8 Hz, 2H), 1.62 (s, 9H), 1.49 (t, J = 6.6 Hz, 1H),
0.85 (d, J = 1.5 Hz, 4H), 0.65 (d, J = 1.5 Hz, 2H), 0.52 (d, J = 1.1 Hz, 2H). ESI-MS
m/z calc. 415.16626, found 360.0 (M-tBu)+; Retention time: 2.09 min (LC Method B).
Step 8: 2-Chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxylic
acid
[0102]
tert-Butyl 2-chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxylate
(5.85 g, 14.07 mmol) was dissolved in dichloromethane (58.5 mL) with trifluoroacetic
acid (16.26 mL, 211.1 mmol) and the reaction was stirred at room temperature for 16
h. The reaction was evaporated and to the resulting solid was added ether and then
removed the ether under reduced pressure. This evaporation from ether was repeated
twice more resulting in a white solid, 2-chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxylic
acid (5.06 g, 100%). 1H NMR (400 MHz, Chloroform-d) δ 8.41 (d, J = 8.5 Hz, 1H), 8.37
(d, J = 2.9 Hz, 1H), 7.75 (d, J = 8.5 Hz, 1H), 5.97 (d, J = 2.9 Hz, 1H), 4.27 (s,
2H), 1.91 (d, J = 6.7 Hz, 2H), 1.50 (s, 1H), 0.85 (d, J = 1.5 Hz, 4H), 0.71 - 0.62
(m, 2H), 0.52 (d, J = 1.1 Hz, 2H). ESI-MS m/z calc. 359.10367, found 360.2 (M+1)+;
Retention time: 2.16 min (LC Method B).
Part B: Synthesis of tert-Butyl (4S)-2,2-dimethyl-4-[3-[(6-sulfamoyl-2-pyridyl)amino]propyl]pyrrolidine-1-carboxylate
[0103]

Step 1: (E)-(2-Oxotetrahydropyran-3-ylidene)methanolate (sodium salt)
[0104]

[0105] A 5 L, 3-neck round bottom flask was fitted with a mechanical stirrer, a heating
mantle, an addition funnel, a J-Kem temperature probe/controller and a nitrogen inlet/outlet.
The vessel was charged under a nitrogen atmosphere with sodium hydride (59.91 g of
60% w/w, 1.498 mol) followed by heptane (1.5 L) which provided a grey suspension.
Stirring was commenced and the pot temperature was recorded at 19 °C. The vessel was
then charged with ethyl alcohol (3.451 g, 74.91 mmol) added
via syringe which resulted in gas evolution. The addition funnel was charged with a clear
pale yellow solution of tetrahydropyran-2-one (150 g, 1.498 mol) and ethyl formate
(111 g, 1.50 mol). The solution was added dropwise over 1 h which resulted in gas
evolution and a gradual exotherm to 45 °C. The resulting thick white suspension was
then heated to 65 °C for 2 h and then allowed to cool to room temperature. The mixture
was continued to stir at room temperature overnight (about 10 h). The reaction mixture
was vacuum filtered through a glass frit Buchner funnel (medium porosity) under a
stream of nitrogen. The filter cake was displacement washed with heptane (2 × 250
mL) and pulled for a few min. The slightly heptane wet cake was transferred to a glass
tray and dried in a vacuum oven at 45 °C for 15 h to provide a white solid (205 g,
1.36 mol, 91% yield) as the desired product, (
E)-(2-oxotetrahydropyran-3-ylidene)methanolate (sodium salt).
Step 2: 3-Methylenetetrahydropyran-2-one
[0106]

[0107] A 5 L, 3-neck round bottom flask was fitted with a mechanical stirrer, a heating
mantle, an addition funnel, a J-Kem temperature probe/controller and a nitrogen inlet/outlet.
The vessel was charged under a nitrogen atmosphere with (
E)-(2-oxotetrahydropyran-3-ylidene)methanolate (sodium salt) (205 g, 1.366 mol) (205
g, 1.366 mol) and tetrahydrofuran (1640 mL) which provided a white suspension. Stirring
was commenced and the pot temperature was recorded at 19 °C. The vessel was then charged
with paraformaldehyde (136.6 g, 4.549 mol) added as a solid in one portion. The resulting
suspension was heated to 63 °C and the condition was maintained for 15 h. Upon heating
the reaction mixture became slightly gelatinous. The white gelatinous mixture was
concentrated under reduced pressure to remove most of the tetrahydrofuran. The remaining
residue was partitioned with ethyl acetate (1000 mL), saturated sodium chloride (500
mL) and saturated sodium hydrogen carbonate (500 mL) in a separatory funnel. The organic
was removed and the residual aqueous was extracted with ethyl acetate (5 × 300 mL).
The combined organic was dried over sodium sulfate (500 g) and then vacuum filtered
through a glass frit Buchner funnel with a 20 mm layer of celite. The filter cake
was displacement washed with ethyl acetate (250 mL). The clear filtrate was concentrated
under reduced pressure to provide a clear pale yellow oil (135 g) as the desired crude
product. The material was purified by silica gel column flash chromatography (liquid
load) eluting with a gradient of 100% hexane to 60% ethyl acetate in hexane over 1
h collecting 450 mL fractions. The product was detected by TLC analysis on silica
gel eluting with 3:1 hexanes/ethyl acetate and visualized under UV. The product fractions
were combined and concentrated under reduced pressure to provide a clear, colorless
oil (132 g, 1.18 mol, 72% yield containing 16 wt% residual ethyl acetate by NMR) as
the desired product, 3-methylenetetrahydropyran-2-one. 1H NMR (400 MHz, dimethyl sulfoxide-d
6) δ 6.18 (q, J = 1.9 Hz, 1H), 5.60 (q, J = 1.9 Hz, 1H), 4.40 - 4.26 (m, 2H), 2.61
(ddt, J = 7.0, 6.3, 2.0 Hz, 2H), 1.90 - 1.75 (m, 2H).
Step 3: 3-(2-Methyl-2-nitro-propyl)tetrahydropyran-2-one
[0108]

[0109] A 5000 mL, 3-neck round bottom flask was fitted with a mechanical stirrer, a cooling
bath used as secondary containment, a J-Kem temperature probe, an addition funnel
and a nitrogen inlet/outlet. The vessel was charged under a nitrogen atmosphere with
2-nitropropane (104.9 g, 1.177 mol) . Stirring was commenced and the pot temperature
was recorded at 19 °C. The vessel was then charged with 1,8-diazabicyclo[5.4.0]undec-7-ene
(22.41 g, 147.2 mmol) added neat in one portion which resulted in a clear light yellow
solution. No exotherm was observed. The addition funnel was charged with a solution
of 3-methylenetetrahydropyran-2-one (110 g, 981.0 mmol) in acetonitrile (1100 mL)
which was added dropwise over 1 h which resulted in a clear light yellow solution
and a gradual exotherm to 24 °C. The reaction mixture was continued to stir at room
temperature for 3.5 h and then concentrated under reduced pressure. The remaining
residue was dissolved in dichloromethane (1000 mL) and partitioned with 500 mL of
a 3:2 mixture of 1 molar citric acid solution/saturated sodium chloride solution.
The resulting organic phase was a clear pale blue solution and the aqueous phase was
a slightly cloudy very pale blue solution. The organic was removed and the residual
aqueous was extracted with dichloromethane (300 mL). The combined organic was washed
with saturated sodium chloride solution (300 mL), dried over sodium sulfate (250 g)
and then filtered through a glass frit Buchner funnel. The filtrate was concentrated
under reduced pressure to a volume of about 200 mL. The clear pale blue dichloromethane
solution was diluted with methyl
tert-butyl ether (1500 mL) and the cloudy solution was concentrated under reduced pressure
to a volume of about 200 mL which provided a suspension. The mixture was again diluted
with methyl
tert-butyl ether (1500 mL) and concentrated under reduced pressure to a volume of about
250 mL. The resulting suspension was allowed to stand at room temperature overnight
(about 12 h). The solid was collected by vacuum filtration in a glass frit Buchner
funnel and the filter cake was displacement washed with cold methyl
tert-butyl ether (2 × 150 mL) and then pulled for 30 min. The material was further dried
in a vacuum oven at 45 °C for 5 h to provide (160 g, 0.795 mol, 81% yield) of a white
solid as the desired product, 3-(2-methyl-2-nitro-propyl)tetrahydropyran-2-one. 1H
NMR (400 MHz, dimethyl sulfoxide-d
6) δ 4.34 (ddd, J = 11.1, 9.3, 4.3 Hz, 1H), 4.20 (dt, J = 11.1, 5.1 Hz, 1H), 2.75 -
2.62 (m, 1H), 2.56 (dd, J = 14.9, 5.2 Hz, 1H), 2.01 - 1.89 (m, 2H), 1.89 - 1.67 (m,
2H), 1.55 (d, J = 6.0 Hz, 6H), 1.44 (dddd, J = 12.8, 11.5, 8.1, 6.6 Hz, 1H).
Step 4: 3-(3-Hydroxypropyl)-5,5-dimethyl-pyrrolidin-2-one
[0110]

[0111] A 1000 mL, 3-neck round bottom flask was fitted with a Teflon stir bar, a heating
mantle, a J-Kem temperature probe/controller and rubber septums. The vessel was charged
with 3-(2-methyl-2-nitro-propyl)tetrahydropyran-2-one (25 g, 124.2 mmol) and ethyl
alcohol (375 mL) which provided a white suspension. Stirring was commenced and the
suspension was heated to 40 °C for 10 min which provided a clear colorless solution.
The vessel was then fitted with a gas dispersion tube and the solution was degased
with nitrogen for 15 min. The vessel was then charged with Raney Nickel (8.019 g of
50% w/w, 68.31 mmol) and the vessel was then fitted with the septums. The vessel was
evacuated and placed under a hydrogen atmosphere. The process was repeated for three
cycles. The vessel was then placed under 1 atmosphere hydrogen and the reaction mixture
was gradually heated to 60 °C. The reaction was continued to stir at 60 °C for 24
h. After cooling to room temperature, the vessel was fitted with a gas dispersion
tube and the reaction mixture was degased with nitrogen for 15 min. The mixture was
vacuum filtered through a glass frit Buchner funnel with a 20 mm layer of celite.
The filter cake was displacement washed with ethanol (2 × 100 mL) and pulled until
slightly ethyl alcohol wet, then wetted with water and the used Raney nickel catalyst
was discarded under water. The clear pale amber filtrate was concentrated under reduced
pressure to a clear viscous light amber oil. The oil was diluted with methyl tert-butyl
ether (1500 mL) and the cloudy solution was concentrated under reduced pressure to
a volume of about 150 mL which provided a suspension. The mixture was again diluted
with methyl tert-butyl ether (1500 mL) and concentrated under reduced pressure to
a volume of about 150 mL. The resulting suspension was allowed to stand at room temperature
overnight (about 12 h). The solid was collected by vacuum filtration in a glass frit
Buchner funnel and the filter cake was displacement washed with cold methyl tert-butyl
ether (2 × 50 mL) and then pulled for 30 min. The material was further dried in a
vacuum oven at 45 °C for 3 h to provide a white solid (19 g, 0.111 mol, 89% yield)
as the product, 3-(3-hydroxypropyl)-5,5-dimethyl-pyrrolidin-2-one. 1H NMR (400 MHz,
dimethyl sulfoxide-d
6) δ 7.63 (s, 1H), 3.38 (t, J = 6.5 Hz, 2H), 2.37 (tdd, J = 9.8, 8.5, 4.4 Hz, 1H),
2.02 (dd, J = 12.3, 8.6 Hz, 1H), 1.72 (tdd, J = 9.6, 7.5, 4.4 Hz, 1H), 1.52 - 1.32
(m, 3H), 1.28 - 1.03 (m, 7H).
Step 5: 3-(5,5-Dimethylpyrrolidin-3-yl)propan-1-ol
[0112]

[0113] A 5 L, 3-neck round bottom flask was fitted with a mechanical stirrer, a heating
mantle, an addition funnel, a J-Kem temperature probe/controller and a nitrogen inlet/outlet.
The vessel was charged under a nitrogen atmosphere with lithium aluminum hydride pellets
(19.39 g, 510.9 mmol). The vessel was then charged with tetrahydrofuran (500 mL, 20
mL/g). Stirring was commenced and the pot temperature was recorded at 20 °C. The mixture
was allowed to stir at room temperature for 0.5 h to allow the pellets to dissolve.
The pot temperature of the resulting grey suspension was recorded at 24 °C. The addition
funnel was charged with a solution of 3-(3-hydroxypropyl)-5,5-dimethyl-pyrrolidin-2-one
(25 g, 146.0 mmol) in tetrahydrofuran (500 mL) and the clear pale yellow solution
was added dropwise over 90 min. Slight heating was required to achieve homogeneity.
After the completed addition the pot temperature of the resulting greyish suspension
was recorded at 24 °C. The mixture was then heated to a pot temperature of 65 °C and
the condition was maintained for 72 h. Analysis of the reaction mixture at this point
indicated some residual starting material still remaining and no change in product
formation. The reaction was subsequently stopped at this point. The heating mantle
was removed and the vessel was fitted with a cooling bath. The suspension was cooled
to 0 °C with a crushed ice/water cooling bath and then quenched by the very slow dropwise
addition of water (19.93 mL), followed by 15 wt% sodium hydroxide solution (19.93
mL) and then finally with water (59.79 mL). The pot temperature of the resulting white
suspension was recorded at 5 °C. The cooling bath was removed and the vessel was again
fitted with a heating mantle. The suspension was warmed to 60 °C and the condition
was maintained for 30 min. The warm suspension was vacuum filtered through a glass
frit Buchner funnel with a 20 mm layer of celite. The filter cake was then displacement
washed with 60 °C tetrahydrofuran (2 × 250 mL) and then pulled for 30 min. The clear
filtrate was concentrated under reduced pressure to provide (23.5 g, 0.149 mol, 99%
yield) of a clear light yellow viscous oil as the desired product, 3-(5,5-dimethylpyrrolidin-3-yl)propan-1-ol.
1H NMR (400 MHz, dimethyl sulfoxide-d
6) δ 3.37 (dt, J = 8.3, 6.4 Hz, 3H), 2.95 (dd, J = 10.6, 7.6 Hz, 1H), 2.40 (dd, J =
10.7, 7.7 Hz, 1H), 2.04 (dt, J = 16.1, 8.1 Hz, 1H), 1.69 (dd, J = 12.2, 8.2 Hz, 1H),
1.50 - 1.24 (m, 5H), 1.11 - 0.94 (m, 7H).
Step 6: tert-Butyl 4-(3-hydroxypropyl)-2,2-dimethyl-pyrrolidine-1-carboxylate
[0114]

[0115] A 1 L, 3-neck round bottom flask was fitted with a mechanical stirrer, a cooling
bath, an addition funnel, a J-Kem temperature probe and a nitrogen inlet/outlet. The
vessel was charged under a nitrogen atmosphere with 3-(5,5-dimethylpyrrolidin-3-yl)propan-1-ol
(15 g, 95.39 mmol) and dichloromethane (225 mL, 15 mL/g) which provided a clear light
yellow solution. Stirring was commenced and the pot temperature was recorded at 19
°C. The cooling bath was charged with crushed ice/water and the pot temperature was
lowered to 0 °C. The addition funnel was charged with triethylamine (12.55 g, 124.0
mmol) which was subsequently added neat dropwise over 5 min. No exotherm was observed.
The addition funnel was then charged with di-
tert-butyl dicarbonate (22.89 g, 104.9 mmol) dissolved in dichloromethane (225 mL). The
clear pale yellow solution was then added dropwise over 30 min which resulted in gentle
gas evolution. No exotherm was observed. The cooling bath was removed and the resulting
clear light yellow solution was allowed to warm to room temperature and continue to
stir at room temperature for 3 h. The reaction mixture was transferred to a separatory
funnel and partitioned with water (75 mL). The organic was removed and washed with
saturated sodium chloride solution (75 mL), dried over sodium sulfate (150 g) and
then filtered through a glass frit Buchner funnel. The filtrate was concentrated under
reduced pressure to provide (30 g) of a clear light yellow oil as the desired crude
product. The material was purified by silica gel column flash chromatography (liquid
load with dichloromethane) eluting with a gradient of 100% dichloromethane to 10%
methyl alcohol in dichloromethane over 60 min collecting 50 mL fractions. The desired
product fractions were combined and concentrated under reduced pressure to provide
tert-butyl 4-(3-hydroxypropyl)-2,2-dimethyl-pyrrolidine-1-carboxylate (22 g, 0.0855 mol,
90% yield) as a clear pale yellow viscous oil. 1H NMR (400 MHz, DMSO-d
6) δ 4.38 (td, J = 5.2, 1.4 Hz, 1H), 3.54 (dt, J = 10.3, 6.7 Hz, 1H), 3.38 (td, J =
6.6, 3.5 Hz, 2H), 2.76 (q, J = 10.3 Hz, 1H), 2.07 (td, J = 11.6, 5.7 Hz, 1H), 1.87
(ddd, J = 16.7, 12.1, 6.0 Hz, 1H), 1.37 (dd, J = 14.2, 10.4 Hz, 17H), 1.24 (s, 3H).
Step 7: tert-Butyl 2,2-dimethyl-4-(3-methylsulfonyl oxypropyl)pyrrolidine-1-carboxylate
[0116]
tert-Butyl 4-(3-hydroxypropyl)-2,2-dimethyl-pyrrolidine-1-carboxylate (50.5 g, 196.22
mmol) and triethylamine (39.711 g, 54.698 mL, 392.44 mmol) were dissolved in dichloromethane
(500 mL) and the resulting solution was chilled in an ice water bath for 30 min. Mesyl
chloride (24.725 g, 16.706 mL, 215.84 mmol) was added dropwise over a 30 min period,
then the ice bath was removed and the mixture stirred at room temperature for one
hour. The reaction was then quenched with saturated sodium bicarbonate solution (200
mL). The phases were separated and the organic phase was extracted with saturated
sodium bicarbonate (200 mL) and water (2 × 100 mL). The aqueous phases were discarded
and the organic phase was dried over sodium sulfate, filtered and concentrated
in vacuo to obtain
tert-butyl 2,2-dimethyl-4-(3-methylsulfonyl oxypropyl)pyrrolidine-1-carboxylate (64.2
g, 93%) as a pale yellow oil. ESI-MS m/z calc. 335.1766, found 336.4 (M+1)+; Retention
time: 5.54 min (LC Method Q).
Step 8: tert-Butyl 4-(3-aminopropyl)-2,2-dimethyl-pyrrolidine-1-carboxylate
[0117]
tert-Butyl 2,2-dimethyl-4-(3-methylsulfonyloxypropyl)pyrrolidine-1-carboxylate (64.2 g,
191.38 mmol) was dissolved in dioxane (650 mL) and then ammonium hydroxide (650 mL)
was added and the resulting mixture heated to 45 °C for 18 h. After 18 h, the reaction
was cooled to room temperature. The solution was diluted with 1M sodium hydroxide
(200 mL) and then extracted with diethyl ether (3 × 650 mL). The aqueous phase was
discarded and the combined organic phases were extracted with water (2 × 200 mL).
The aqueous phases were discarded and the organic phase was dried over sodium sulfate,
filtered and concentrated
in vacuo to afford
tert-butyl 4-(3-aminopropyl)-2,2-dimethyl-pyrrolidine-1-carboxylate (48.9 g, 95%) as a
pale yellow oil. ESI-MS m/z calc. 256.2151, found 257.3 (M+1)+; Retention time: 3.70
min (LC Method Q).
Step 9: tert-Butyl 2,2-dimethyl-4-[3-[(6-sulfamoyl-2-pyridyl)amino]propyl]pyrrolidine-1-carboxylate
[0118]

[0119] To
tert-butyl 4-(3-aminopropyl)-2,2-dimethyl-pyrrolidine-1-carboxylate (8.91 g, 34.8 mmol)
and 6-fluoropyridine-2-sulfonamide (6.13 g, 34.8 mmol) in dimethyl sulfoxide (75 mL)
was added potassium carbonate (4.91 g, 35.5 mmol) and the mixture stirred at 100 °C
for 12 h and then allowed to cool to ambient temperature and stirred for an additional
4 h (16 h total). The reaction mixture was slowly poured into hydrochloric acid (35
mL of 1 M, 35.00 mmol) in water (200 mL) (some foaming) and diluted with ethyl acetate
(250 mL). The organic phase was separated and washed with 100 mL of brine. The organic
phase was dried over magnesium sulfate, filtered over celite, and concentrated in
vacuo to afford a dark yellow oil. The crude product was purified by silica gel chromatography
eluting with 0% - 100% ethyl acetate in hexanes. Collected both pure (9.0 g) and impure
(3 g) fractions. Purified the impure fractions by silica gel chromatography eluting
with 0% - 100% ethyl acetate in hexanes affording, in total,
tert-butyl 2,2-dimethyl-4-[3-[(6-sulfamoyl-2-pyridyl)amino]propyl]pyrrolidine-1-carboxylate
(10.0 g, 69%). 1H NMR (400 MHz, dimethyl sulfoxide-d
6) δ 7.52 (dd, J = 8.5, 7.2 Hz, 1H), 7.07 (s, 2H), 6.95 (dd, J = 7.2, 0.7 Hz, 2H),
6.61 (d, J = 8.5 Hz, 1H), 3.55 (q, J = 9.1 Hz, 1H), 3.32 - 3.24 (m, 2H), 2.79 (q,
J = 10.0 Hz, 1H), 2.13 (d, J = 16.1 Hz, 1H), 1.96 - 1.82 (m, 1H), 1.51 (dt, J = 18.0,
9.3 Hz, 2H), 1.37 (dd, J = 12.9, 10.6 Hz, 15H), 1.24 (s, 3H). ESI-MS m/z calc. 412.21442,
found 413.1 (M+1)+; Retention time: 2.34 min (LC Method D).
Step 10: tert-Butyl (4S)-2,2-dimethyl-4-[3-[(6-sulfamoyl-2-pyridyl)amino]propyl]pyrrolidine-1-carboxylate
[0120]

[0121] Subjected racemic
tert-butyl 2,2-dimethyl-4-[3-[(6-sulfamoyl-2-pyridyl)amino]propyl]pyrrolidine-1-carboxylate
(7 g, 16.97 mmol) to chiral separation by SFC chromatography using a ChiralPak IG
(250 × 21.2 mm column, 5µm particle size) with 40% methanol/60% carbon dioxide mobile
phase at 70 mL/min over 11.0 min (injection volume = 500 µL of 32 mg/mL solution in
methanol) giving as the first peak to elute,
tert-butyl (4
S)-2,2-dimethyl-4-[3-[(6-sulfamoyl-2-pyridyl)amino]propyl]pyrrolidine-1-carboxylate
(3.4481 g, 99%). ESI-MS m/z calc. 412.21442, found 413.2 (M+1)
+; Retention time: 0.63 min (LC Method A).
Part C: Synthesis of (14S)-8-[3-(2-{dispiro[2.0.2.1]heptan-7-yl}ethoxy)-1H-pyrazol-1-yl]-12,12-dimethyl-2λ6-thia-3,9,11,18,23-pentaazatetracyclo
[17.3.1.111,14.05,10]tetracosa-1(22),5,7,9,19(23),20-hexaene-2,2,4-trione (Compound
I)
[0122]

Step 1: tert-Butyl (4S)-4-[3-[[6-[[2-chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carbonyl]sulfamoyl]-2-pyridyl]amino]propyl]-2,2-dimethyl-pyrrolidine-1-carboxylate
[0123]

[0124] To a solution of 2-chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxylic
acid (5.2 g, 14.45 mmol) in tetrahydrofuran (100 mL) was added carbonyl diimidazole
(2.8 g, 16.51 mmol) and the mixture stirred at ambient temperature for 1 h. To this
mixture was added
tert-butyl (4
S)-2,2-dimethyl-4-[3-[(6-sulfamoyl-2-pyridyl)amino]propyl]pyrrolidine-1-carboxylate
(6.0 g, 14.54 mmol) in tetrahydrofuran (15 mL) followed by 1,8-diazabicyclo[5.4.0]undec-7-ene
(6.5 mL, 43.47 mmol) and the mixture was stirred at ambient temperature for 16 h.
The reaction was diluted with water (150 mL) and the mixture acidified with aqueous
hydrochloric acid (15 mL of 6 M, 90.00 mmol). The mixture was extracted with ethyl
acetate (300 mL) and the organic phase separated. The organic phase was washed with
brine, dried over magnesium sulfate, filtered over Celite and concentrated
in vacuo affording a white precipitate. The precipitate was slurried with acetonitrile and
the solid collected by filtration using a medium glass frit and washed with acetonitrile.
The filtrate was concentrated
in vacuo affording a yellow oil. The crude oil was diluted with acetonitrile and some
N-methyl-2-pyrrolidone and chromatographed on a 415 g reverse phase C
18 column eluting with 50% - 100% acetonitrile in water giving
tert-butyl (4
S)-4-[3-[[6-[[2-chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carbonyl]sulfamoyl]-2-pyridyl]amino]propyl]-2,2-dimethyl-pyrrolidine-1-carboxylate
(4.5 g, 41%). ESI-MS m/z calc. 753.30756, found 754.4 (M+1)+; Retention time: 3.79
min (LC Method D).
Step 2: 2-Chloro-N-[[6-[3-[(3S)-5,5-dimethylpyrrolidin-3-yl]propylamino]-2-pyridyl]sulfonyl]-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxamide
(trifluoroacetate salt)
[0125]

[0126] To a solution of
tert-butyl (4
S)-4-[3-[[6-[[2-chloro-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carbonyl]sulfamoyl]-2-pyridyl]amino]propyl]-2,2-dimethyl-pyrrolidine-1-carboxylate
(5.9 g, 7.821 mmol) in dichloromethane (30 mL) and toluene (15 mL) was added trifluoroacetic
acid (6.0 mL, 77.88 mmol) and the mixture stirred at ambient temperature for 18 h.
The solvent was removed
in vacuo with the bath temp set at 45 °C affording a thick, yellow oil. The oil was diluted
with toluene (125 mL) and the solvent removed
in vacuo with the bath temp set at 45 °C. The oil was diluted with toluene and the solvent
removed
in vacuo affording a thick, viscous yellow oil, 2-chloro-
N-[[6-[3-[(3
S)-5,5-dimethylpyrrolidin-3-yl]propylamino]-2-pyridyl]sulfonyl]-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxamide
(trifluoroacetate salt) (6.0 g, 100%) which was used in the next step without further
purification. ESI-MS m/z calc. 653.2551, found 654.3 (M+1)
+; Retention time: 2.6 min (LC Method B).
Step 3: (14S)-8-[3-(2-{Dispiro[2.0.2.1]heptan-7-yl}ethoxy)-1H-pyrazol-1-yl]-12,12-dimethyl-2λ6-thia-3,9,11,18,23-pentaazatetracyclo[17.3.1.111,14.05,10]tetracosa-1(22),5,7,9,19(23),20-hexaene-2,2,4-trione
(Compound I)
[0127]

[0128] To a solution of 2-chloro-
N-[[6-[3-[(3
S)-5,5-dimethylpyrrolidin-3-yl]propylamino]-2-pyridyl]sulfonyl]-6-[3-(2-dispiro[2.0.2.1]heptan-7-ylethoxy)pyrazol-1-yl]pyridine-3-carboxamide
(trifluoroacetate salt) (6.0 g, 7.810 mmol) in NMP (140 mL) was added potassium carbonate
(5.3 g, 38.35 mmol). The mixture was purged with nitrogen for 5 min. The mixture was
then heated at 150 °C for 22 h. The reaction mixture was cooled to room temperature
and added to water (300 mL) affording an off-white solid precipitate. The mixture
was carefully acidified with aqueous hydrochloric acid (12 mL of 6 M, 72.00 mmol)
affording a foamy slurry. The solid was collected by filtration using a medium glass
frit. The wet filter cake was dissolved in ethyl acetate (500 mL) and washed with
200 mL of brine. The aqueous phase was slightly cloudy so it was acidified with a
small amount of 6N hydrochloric acid and returned to the organic phase. The aqueous
phase was separated and the organic phase was dried over magnesium sulfate, filtered
and concentrated
in vacuo affording a light yellow oil. This crude product was diluted with acetonitrile and
chromatographed on a 415 g C
18 reverse phase column eluting with 50% - 100% acetonitrile in water. The product was
isolated as a cream colored foam. The foam was dried
in vacuo at 45 °C for 48 h giving (14
S)-8-[3-(2-{dispiro[2.0.2.1]heptan-7-yl}ethoxy)-1H-pyrazol-1-yl]-12,12-dimethyl-2λ6-thia-3,9,11,18,23-pentaazatetracyclo[17.3.1.111,14.05,10]tetracosa-1(22),5,7,9,19(23),20-hexaene-2,2,4-trione
(Compound
I) (3.32 g, 68%).
1H NMR (400 MHz, dimethyl sulfoxide-d
6) δ 12.48 (s, 1H), 8.20 (d, J = 2.8 Hz, 1H), 7.81 (d, J = 8.2 Hz, 1H), 7.57 (dd, J
= 8.5, 7.2 Hz, 1H), 7.05 (d, J = 7.1 Hz, 1H), 6.97 (d, J = 8.5 Hz, 1H), 6.91 (d, J
= 8.2 Hz, 1H), 6.71 (d, J = 8.5 Hz, 1H), 6.08 (d, J = 2.7 Hz, 1H), 4.21 (td, J = 6.7,
1.3 Hz, 2H), 3.92 (d, J = 12.0 Hz, 1H), 3.16 (s, 1H), 2.95 (d, J = 13.3 Hz, 1H), 2.78
- 2.66 (m, 1H), 2.07 (s, 1H), 1.92 - 1.72 (m, 4H), 1.60 (s, 6H), 1.51 (s, 3H), 1.47
(t, J = 6.5 Hz, 1H), 1.31 (q, J = 12.2 Hz, 1H), 0.89 - 0.77 (m, 4H), 0.69 - 0.61 (m,
2H), 0.53 - 0.45 (m, 2H). ESI-MS m/z calc. 617.27844, found 618.4 (M+1)+; Retention
time: 10.29 min (LC Method F).
[0129] Ca
2+, Na
+, and K
+ salts of Compound
I were made by mixing Compound
I with Ca(OCH
3)
2, Na(OCH
3), and KOH, respectively: mixing Compound
I (1g) and Ca(OCH
3)
2 (83 mg) in methanol (65 mL) at room temperature for 30 minutes and then at 65 °C
for 30 minutes; mixing Compound
I (0.6 g (1 mMol)) in MeOH (40 mL) with 25 wt% Na(OCH
3) in MeOH (250 mL (1 molar equiv)) at 60 °C for 20 minutes; and mixing Compound
I (0.6 g) in acetone (11 mL) with 1N KOH (1 molar equivalent) at 50 °C for 1 hour.
After filtration of the resulting hot solutions, the filtrates were evaporated to
dryness to yield the desired amorphous salts, respectively (PXRD data not shown).
Example 2: Synthesis of (R)-1-(2,2-Difluorobenzo[d][1,3]dioxol-5-yl)-N-(1-(2,3-dihydroxypropyl)-6-fluoro-2-(1-hydroxy-2-methylpropan-2-yl)-1H-indol-5-yl)cyclopropanecarboxamide
(Compound II)
[0130]

Step 1: (R)-Benzyl 2-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-5-nitro-1H-indol-2-yl)-2-methylpropanoate
and ((S)-2,2-Dimethyl-1,3-dioxolan-4-yl)methyl 2-(1-(((R)-2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-5-nitro-1H-indol-2-yl)-2-methylpropanoate
[0131] Cesium carbonate (8.23 g, 25.3 mmol) was added to a mixture of benzyl 2-(6-fluoro-5-nitro-1H-indol-2-yl)-2-methylpropanoate
(3.0 g, 8.4 mmol) and (S)-(2,2-dimethyl-1,3-dioxolan-4-yl)methyl 4-methylbenzenesulfonate
(7.23 g, 25.3 mmol) in DMF (17 mL). The reaction was stirred at 80 °C for 46 hours
under a nitrogen atmosphere. The mixture was then partitioned between ethyl acetate
and water. The aqueous layer was extracted with ethyl acetate. The combined ethyl
acetate layers were washed with brine, dried over MgSO
4, filtered and concentrated. The crude product, a viscous brown oil which contains
both of the products shown above, was taken directly to the next step without further
purification. (R)-Benzyl 2-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-5-nitro-1H-indol-2-yl)-2-methylpropanoate,
ESI-MS
m/
z calc. 470.2, found 471.5 (M+1)
+. Retention time 2.20 minutes. ((S)-2,2-Dimethyl-1,3-dioxolan-4-yl)methyl 2-(1-(((R)-2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-5-nitro-1H-indol-2-yl)-2-methylpropanoate,
ESI-MS
m/
z calc. 494.5, found 495.7 (M+1)
+. Retention time 2.01 minutes.
Step 2: (R)-2-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-5-nitro-1H-indol-2-yl)-2-methylpropan-1-ol
[0132] The crude reaction mixture obtained in step (A) was dissolved in THF (42 mL) and
cooled in an ice-water bath. LiAlH
4 (16.8 mL of 1 M solution, 16.8 mmol) was added drop-wise. After the addition was
complete, the mixture was stirred for an additional 5 minutes. The reaction was quenched
by adding water (1 mL), 15% NaOH solution (1 mL) and then water (3 mL). The mixture
was filtered over Celite, and the solids were washed with THF and ethyl acetate. The
filtrate was concentrated and purified by column chromatography (30-60% ethyl acetate-
hexanes) to obtain (R)-2-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-5-nitro-1H-indol-2-yl)-2-methylpropan-1-ol
as a brown oil (2.68g, 87 % over 2 steps). ESI-MS
m/
z calc. 366.4, found 367.3 (M+1)
+. Retention time 1.68 minutes.
1H NMR (400 MHz, DMSO-d6) δ 8.34 (d, J = 7.6 Hz, 1H), 7.65 (d, J = 13.4 Hz, 1H), 6.57
(s, 1H), 4.94 (t, J = 5.4 Hz, 1H), 4.64 - 4.60 (m, 1H), 4.52 - 4.42(m, 2H), 4.16 -
4.14 (m, 1H), 3.76 - 3.74 (m, 1H), 3.63 - 3.53 (m, 2H), 1.42 (s, 3H), 1.38 - 1.36
(m, 6H) and 1.19 (s, 3H) ppm
Step 3: (R)-2-(5-amino-1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-1H-indol-2-yl)-2-methylpropan-1-ol
[0133] (R)-2-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-5-nitro-1H-indol-2-yl)-2-methylpropan-1-ol
(2.5 g, 6.82 mmol) was dissolved in ethanol (70 mL) and the reaction was flushed with
N
2. Then Pd-C (250 mg, 5% wt) was added. The reaction was flushed with nitrogen again
and then stirred under H
2 (atm). After 2.5 hours only partial conversion to the product was observed by LCMS.
The reaction was filtered through Celite and concentrated. The residue was re-subjected
to the conditions above. After 2 hours LCMS indicated complete conversion to product.
The reaction mixture was filtered through Celite. The filtrate was concentrated to
yield the product as a black solid (1.82 g, 79 %). ESI-MS
m/
z calc. 336.2, found 337.5 (M+1)
+. Retention time 0.86 minutes.
1H NMR (400 MHz, DMSO-
d6) δ 7.17 (d, J = 12.6 Hz, 1H), 6.76 (d, J = 9.0 Hz, 1H), 6.03 (s, 1H), 4.79 - 4.76
(m, 1H), 4.46 (s, 2H), 4.37 - 4.31 (m, 3H),4.06 (dd, J = 6.1, 8.3 Hz, 1H), 3.70 -
3.67 (m, 1H), 3.55 - 3.52 (m, 2H), 1.41 (s, 3H), 1.32 (s, 6H) and 1.21 (s, 3H) ppm.
Step 4: (R)-1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)-N-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-2-(1-hydroxy-2-methylpropan-2-yl)-1H-indol-5-yl)cyclopropanecarboxamide
[0134] DMF (3 drops) was added to a stirring mixture of 1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)cyclopropanecarboxylic
acid (1.87 g, 7.7 mmol) and thionyl chloride (1.30 mL, 17.9 mmol). After 1 hour a
clear solution had formed. The solution was concentrated under vacuum and then toluene
(3 mL) was added and the mixture was concentrated again. The toluene step was repeated
once more and the residue was placed on high vacuum for 10 minutes. The acid chloride
was then dissolved in dichloromethane (10 mL) and added to a mixture of (R)-2-(5-amino-1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-1H-indol-2-yl)-2-methylpropan-1-ol
(1.8 g, 5.4 mmol) and triethylamine (2.24 mL, 16.1 mmol) in dichloromethane (45 mL).
The reaction was stirred at room temperature for 1 hour. The reaction was washed with
1N HCl solution, saturated NaHCO
3 solution and brine, dried over MgSO
4 and concentrated to yield the product as a black foamy solid (3g, 100%). ESI-MS
m/
z calc. 560.6, found 561.7 (M+1)
+. Retention time 2.05 minutes.
1H NMR (400 MHz, DMSO-d6) δ 8.31 (s, 1H), 7.53 (s, 1H), 7.42 - 7.40 (m, 2H), 7.34 -
7.30 (m, 3H), 6.24 (s, 1H), 4.51 - 4.48 (m, 1H), 4.39 - 4.34 (m,2H), 4.08 (dd, J =
6.0, 8.3 Hz, 1H), 3.69 (t, J = 7.6 Hz, 1H), 3.58 - 3.51 (m, 2H), 1.48 - 1.45 (m, 2H),
1.39 (s, 3H), 1.34 - 1.33 (m, 6H), 1.18 (s, 3H) and 1.14 - 1.12 (m, 2H) ppm
Step 5: (R)-1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)-N-(1-(2,3-dihydroxypropyl)-6-fluoro-2-(1-hydroxy-2-methylpropan-2-yl)-1H-indol-5-yl)cyclopropanecarboxamide
[0135] (R)-1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)-N-(1-((2,2-dimethyl-1,3-dioxolan-4-yl)methyl)-6-fluoro-2-(1-hydroxy-2-methylpropan-2-yl)-1H-indol-5-yl)cyclopropanecarboxamide
(3.0 g, 5.4 mmol) was dissolved in methanol (52 mL). Water (5.2 mL) was added followed
by p-TsOH.H
2O (204 mg, 1.1 mmol). The reaction was heated at 80 °C for 45 minutes. The solution
was concentrated and then partitioned between ethyl acetate and saturated NaHCO
3 solution. The ethyl acetate layer was dried over MgSO
4 and concentrated. The residue was purified by column chromatography (50-100 % ethyl
acetate - hexanes) to yield the product as a cream colored foamy solid. (1.3 g, 47
%, ee >98% by SFC). ESI-MS
m/
z calc. 520.5, found 521.7 (M+1)
+. Retention time 1.69 minutes.
1H NMR (400 MHz, DMSO-
d6) δ 8.31 (s, 1H), 7.53 (s, 1H), 7.42 - 7.38 (m, 2H), 7.33 - 7.30 (m, 2H), 6.22 (s,
1H), 5.01 (d, J = 5.2 Hz, 1H), 4.90 (t, J = 5.5 Hz, 1H), 4.75 (t, J = 5.8 Hz, 1H),
4.40 (dd, J = 2.6, 15.1 Hz, 1H), 4.10 (dd, J = 8.7, 15.1 Hz, 1H), 3.90 (s, 1H), 3.65
- 3.54 (m, 2H), 3.48 - 3.33 (m, 2H), 1.48 - 1.45 (m, 2H), 1.35 (s, 3H), 1.32 (s, 3H)
and 1.14 - 1.11 (m, 2H) ppm.
Example 3: Synthesis of N-(2,4-di-tert-butyl-5-hydroxyphenyl)-4-oxo-1,4-dihydroquinoline-3-carboxamide (Compound III)
Part A: Synthesis of 4-oxo-1,4-dihydroquinoline-3-carboxylic acid
[0136]

Step 1: 2-Phenylaminomethylene-malonic acid diethyl ester
[0137] A mixture of aniline (25.6 g, 0.275 mol) and diethyl 2-(ethoxymethylene)malonate
(62.4 g, 0.288 mol) was heated at 140-150 °C for 2 h. The mixture was cooled to room
temperature and dried under reduced pressure to afford 2-phenylaminomethylene-malonic
acid diethyl ester as a solid, which was used in the next step without further purification.
1H NMR (DMSO-
d6) δ 11.00 (d, 1H), 8.54 (d,
J = 13.6 Hz, 1H), 7.36-7.39 (m, 2H), 7.13-7.17 (m, 3H), 4.17-4.33 (m, 4H), 1.18-1.40
(m, 6H).
Step 2: 4-Hydroxyquinoline-3-carboxylic acid ethyl ester
[0138] A 1 L three-necked flask fitted with a mechanical stirrer was charged with 2-phenylaminomethylene-malonic
acid diethyl ester (26.3 g, 0.100 mol), polyphosphoric acid (270 g) and phosphoryl
chloride (750 g). The mixture was heated to 70 °C and stirred for 4 h. The mixture
was cooled to room temperature and filtered. The residue was treated with aqueous
Na
2CO
3 solution, filtered, washed with water and dried. 4-Hydroxyquinoline-3-carboxylic
acid ethyl ester was obtained as a pale brown solid (15.2 g, 70%). The crude product
was used in next step without further purification.
Step 3: 4-Oxo-1,4-dihydroquinoline-3-carboxylic acid
[0139] 4-Hydroxyquinoline-3-carboxylic acid ethyl ester (15 g, 69 mmol) was suspended in
sodium hydroxide solution (2N, 150 mL) and stirred for 2 h at reflux. After cooling,
the mixture was filtered, and the filtrate was acidified to pH 4 with 2N HCl. The
resulting precipitate was collected via filtration, washed with water and dried under
vacuum to give 4-oxo-1,4-dihydroquinoline-3-carboxylic acid as a pale white solid
(10.5 g, 92 %).
1H NMR (DMSO-
d6) δ 15.34 (s, 1 H), 13.42 (s, 1 H), 8.89 (s, 1H), 8.28 (d,
J = 8.0 Hz, 1H), 7.88 (m, 1H), 7.81 (d, J = 8.4 Hz, 1H), 7.60 (m, 1H).
Part B: Synthesis of N-(2,4-di-tert-butyl-5-hydroxyphenyl)-4-oxo-1,4-dihydro quinoline-3-carboxamide
[0140]

Step 1: Carbonic acid 2,4-di-tert-butyl-phenyl ester methyl ester
[0141] Methyl chloroformate (58 mL, 750 mmol) was added dropwise to a solution of 2,4-di-
tert-butyl-phenol (103.2 g, 500 mmol), Et
3N (139 mL, 1000 mmol) and DMAP (3.05 g, 25 mmol) in dichloromethane (400 mL) cooled
in an ice-water bath to 0 °C. The mixture was allowed to warm to room temperature
while stirring overnight, then filtered through silica gel (approx. 1L) using 10%
ethyl acetate - hexanes (~ 4 L) as the eluent. The combined filtrates were concentrated
to yield carbonic acid 2,4-di-
tert-butyl-phenyl ester methyl ester as a yellow oil (132 g, quant.).
1H NMR (400 MHz, DMSO-
d6) δ 7.35 (d, J = 2.4 Hz, 1H), 7.29 (dd, J = 8.5, 2.4 Hz, 1H), 7.06 (d, J = 8.4 Hz,
1H), 3.85 (s, 3H), 1.30 (s, 9H), 1.29 (s, 9H).
Step 2: Carbonic acid 2,4-di-tert-butyl-5-nitro-phenyl ester methyl ester and Carbonic acid 2,4-di-tert-butyl-6-nitro-phenyl ester methyl ester
[0142] To a stirring mixture of carbonic acid 2,4-di-
tert-butyl-phenyl ester methyl ester (4.76 g, 180 mmol) in conc. sulfuric acid (2 mL),
cooled in an ice-water bath, was added a cooled mixture of sulfuric acid (2 mL) and
nitric acid (2 mL). The addition was done slowly so that the reaction temperature
did not exceed 50 °C. The reaction was allowed to stir for 2 h while warming to room
temperature. The reaction mixture was then added to ice-water and extracted into diethyl
ether. The ether layer was dried (MgSO
4), concentrated and purified by column chromatography (0 - 10% ethyl acetate - hexanes)
to yield a mixture of carbonic acid 2,4-di-
tert-butyl-5-nitro-phenyl ester methyl ester and carbonic acid 2,4-di-
tert-butyl-6-nitro-phenyl ester methyl ester as a pale yellow solid (4.28 g), which was
used directly in the next step.
Step 3: 2,4-Di-tert-butyl-5-nitro-phenol and 2,4-Di-tert-butyl-6-nitro-phenol
[0143] The mixture of carbonic acid 2,4-di-
tert-butyl-5-nitro-phenyl ester methyl ester and carbonic acid 2,4-di-
tert-butyl-6-nitro-phenyl ester methyl ester (4.2 g, 14.0 mmol) was dissolved in MeOH
(65 mL) before KOH (2.0 g, 36 mmol) was added. The mixture was stirred at room temperature
for 2 h. The reaction mixture was then made acidic (pH 2-3) by adding conc. HCl and
partitioned between water and diethyl ether. The ether layer was dried (MgSO
4), concentrated and purified by column chromatography (0 - 5 % ethyl acetate - hexanes)
to provide 2,4-di-
tert-butyl-5-nitro-phenol (1.31 g, 29% over 2 steps) and 2,4-di-
tert-butyl-6-nitro-phenol. 2,4-Di-
tert-butyl-5-nitro-phenol:
1H NMR (400 MHz, DMSO-
d6) δ 10.14 (s, 1H, OH), 7.34 (s, 1H), 6.83 (s, 1H), 1.36 (s, 9H), 1.30 (s, 9H). 2,4-Di-
tert-butyl-6-nitro-phenol:
1H NMR (400 MHz, CDCl
3) δ 11.48 (s, 1H), 7.98 (d, J = 2.5 Hz, 1H), 7.66 (d, J = 2.4 Hz, 1H), 1.47 (s, 9H),
1.34 (s, 9H).
Step 4: 5-Amino-2,4-di-tert-butyl-phenol
[0144] To a reluxing solution of 2,4-di-
tert-butyl-5-nitro-phenol (1.86 g, 7.40 mmol) and ammonium formate (1.86 g) in ethanol
(75 mL) was added Pd-5% wt. on activated carbon (900 mg). The reaction mixture was
stirred at reflux for 2 h, cooled to room temperature and filtered through Celite.
The Celite was washed with methanol and the combined filtrates were concentrated to
yield 5-amino-2,4-di-
tert-butyl-phenol as a grey solid (1.66 g, quant.).
1H NMR (400 MHz, DMSO-
d6) δ 8.64 (s, 1H, OH), 6.84 (s, 1H), 6.08 (s, 1H), 4.39 (s, 2H, NH
2), 1.27 (m, 18H); HPLC ret. time 2.72 min, 10-99 % CH
3CN, 5 min run; ESI-MS 222.4 m/z [M+H]
+.
Step 5: N-(5-hydroxy-2,4-di-tert-butyl-phenyl)-4-oxo-1H-quinoline-3-carboxamide
[0145]

[0146] To a suspension of 4-oxo-1,4-dihydroquinolin-3-carboxylic acid (35.5 g, 188 mmol)
and HBTU (85.7 g, 226 mmol) in DMF (280 mL) was added Et
3N (63.0 mL, 451 mmol) at ambient temperature. The mixture became homogeneous and was
allowed to stir for 10 min before 5-amino-2,4-di-
tert-butyl-phenol (50.0 g, 226 mmol) was added in small portions. The mixture was allowed
to stir overnight at ambient temperature. The mixture became heterogeneous over the
course of the reaction. After all of the acid was consumed (LC-MS analysis, MH+ 190,
1.71 min), the solvent was removed
in vacuo. EtOH was added to the orange solid material to produce a slurry. The mixture was
stirred on a rotovap (bath temperature 65 °C) for 15 min without placing the system
under vacuum. The mixture was filtered and the captured solid was washed with hexanes
to provide a white solid that was the EtOH crystalate. Et
2O was added to the solid obtained above until a slurry was formed. The mixture was
stirred on a rotovapor (bath temperature 25 °C) for 15 min without placing the system
under vacuum. The mixture was filtered and the solid captured. This procedure was
performed a total of five times. The solid obtained after the fifth precipitation
was placed under vacuum overnight to provide N-(5-hydroxy-2,4-di-
tert-butyl-phenyl)-4-oxo-1H-quinoline-3-carboxamide as a white powdery solid (38 g, 52%).
HPLC ret. time 3.45 min, 10-99% CH
3CN, 5 min run;
1H NMR (400 MHz, DMSO-
d6) δ 12.88 (s, 1H), 11.83 (s, 1H), 9.20 (s, 1H), 8.87 (s, 1H), 8.33 (dd, J = 8.2, 1.0
Hz, 1H), 7.83-7.79 (m, 1H), 7.76 (d, J = 7.7 Hz, 1H), 7.54-7.50 (m, 1H), 7.17 (s,
1H), 7.10 (s, 1H), 1.38 (s, 9H), 1.37 (s, 9H); ESI-MS m/z calc'd 392.21; found 393.3
[M+H]
+.
Example 4: Synthesis of N -(2-( tert-Buty1 )-4-( tert-buty1 -d,)-5- hydroxyphenyl
)-4-oxo-1 ,4-dihydroquinoline-3 -carboxamide (Compound III-d)
Step 1. 2-(tert-Butyl-d9)-4-(tert-butyl)-6-d-phenol
[0147] To a solution of 4-tert-butyl phenol (3.43 g, 22.7 mmol) and tert-butyl alcohol-d10
(3.00 mL, 31.8 mmol, 98 atom% D, Cambridge Isotope Laboratories, Inc.) in dichloromethane
(40.0 mL) was added D
2SO
4 (1.50 mL, 99.5 atom% D, Sigma-Aldrich). The reaction was stirred at room temperature
for 15 hours then was diluted with water and extracted with dichloromethane (3x100
mL). The organic layers were combined, washed with saturated NaHCO
3, dried (Na
2SO
4), filtered, and concentrated in vacuo. The resulting oil was purified by column chromatography
(SiO
2, 0-15% ethyl acetate/heptanes) to afford 2-(tert-Butyl-d
9)-4-(tert-butyl)-6-d-phenol (4.04 g, 83% yield) as a clear oil.
1HNMR (d
6-DMSO, 400MHz) δ 9.04 (s, 1H), 7.12 (d,
J=
2.4 Hz, 1H), 6.98 (dd, J=3.8, 2.5 Hz, 1H), 6.67 (d, J=8.3 Hz, 0.3H), 1.22 (s, 10H).
Step 2: 2-(tert-Butyl-d9)-4-(tert-butyl)-6-d-phenyl methyl carbonate
[0148] To a solution of 2-(tert-Butyl-d
9)-4-(tert-butyl)-6-d-phenol (4.04 g, 18.8 mmol), triethylamine (5.24 mL, 37.6 mmol)
and N,N-dimethylaminopyridine (115 mg, 0.940 mmol) in CH
2Cl
2 (40.0 mL) at 0 °C was added methyl chloroformate (2.17 mL, 28.2 mmol). The reaction
was stirred at room temperature for 15 hours and additional trimethylamine (1.30 mL,
9.33 mmol) and methyl chloroformate (0.550 mL, 7.15 mmol) were added. After stirring
for an additional 1 hour the reaction was diluted with 10% ethyl acetate/heptanes
and filtered through a silica plug. The silica plug was then rinsed with additional
10% ethyl acetate/heptanes. The filtrate was combined and concentrated in vacuo to
provide 2-(tert-Butyl-d
9)-4-(tert-butyl)-6-d-phenyl methyl carbonate (4.69 g, 91% yield) as a light yellow
oil which was carried forward without purification.
1H NMR (d
6-DMSO, 400 MHz) δ 7.33 (d,
J=
2.4 Hz, 1H), 7.30-7.20 (m, 1H), 7.06 (d, J=8.5 Hz, 0.3H), 3.84 (d,
J=
0.7 Hz, 3H), 1.28 (s, 9H).
Step 3: 2-(tert-Butyl-d9)-4-(tert-butyl)-6-d-5-nitro-phenol
[0149] To a solution of 2-(tert-Butyl-d
9)-4-(tert-butyl)-6-d-phenyl methyl carbonate (4.69 g, 17.2 mmol) in sulfuric acid
(2.00 mL) at 0 °C was added a 1:1 mixture of sulfuric acid and nitric acid (4.00 mL)
dropwise. The reaction was then stirred at room temperature for two hours then slowly
added to ice water with vigorous stirring. The resulting slurry was extracted with
ethyl acetate (3x100 mL) and the combined organic layers were dried (Na
2SO
4), filtered, and concentrated to afford an amber oil containing a mixture of regioisomers.
This crude oil was then taken up in MeOH (100 mL) and KOH (3.50 g) was added. The
reaction was stirred at room temperature for 2 hours then was acidified to pH=2 with
concentrated HCl. The resulting solution was extracted with diethyl ether (3x100 mL),
dried (MgSO
4), filtered, and concentrated. The residue was then purified via column chromatography
(SiO
2, 0-5% ethyl acetate/heptanes) to afford 2-(tert-Butyl-d
9)-4-(tert-butyl)-6-d-5-nitro-phenol (1.33 g, 30%) as a light yellow solid. MS (ESI)
260.2 [(M-H)
-].
Step 4: 5-Amino-2-(tert-butyl-d9)-4-(tert-butyl)-6-d-phenol
[0150] A solution of 2-(tert-Butyl-d
9)-4-(tert-butyl)-6-d-5-nitro-phenol (1.33 g, 5.11 mmol) and ammonium formate (1.29
g, 20.4 mmol) in ethanol (60.0 mL) was heated to reflux. At this time, 10% Pd/C (650
mg, 50% wet) was added in small portions and the reaction continued to stir at reflux
for two hours. The reaction was then cooled to room temperature, diluted with THF,
filtered through Celite
® and concentrated in vacuo to afford 5-Amino-2-(tert-butyl-d9)-4-(tert-butyl)-6-d-phenol
(1.19 g, 100%) as a pink solid. MS (ESI) 232.3 [(M+H)
+].
Step 5: 5-Amino-2-(tert-butyl-d9)-4-(tert-butyl)-phenol
[0151] 5-Amino-2-(tert-butyl-d
9)-4-(tert-butyl)-6-dphenol (298 mg, 1.29 mmol) was dissolved in 5M HCl in 2-propanol
(20 mL) and the reaction was stirred at room temperature for 15 hours. The reaction
was then concentrated in vacuo and taken back up in 5M HCl in 2-propanol (20 mL).
After stirring for an additional 15 hours at room temperature, the reaction was concentrated
in vacuo and diluted with saturated aqueous sodium bicarbonate (100 mL ). The resulting
aqueous solution was extracted with dichloromethane (3x50 mL). The organic layers
were combined, dried (Na
2SO
4), filtered and concentrated in vacuo to afford 5-Amino-2-(tert-butyl-d
9)-4-(tert-butyl)-phenol (240 mg, 81%) as a pink solid.
1H NMR (d
6-DMSO, 400 MHz) δ 8.62 (s, 1H), 6.83 (s, 1H), 6.08 (s, 1H), 1.27 (s, 9H).
Step 6: N-(2-(tert-Butyl)-4-(tert-butyl-d9)-5-hydroxyphenyl)-4-oxo-1,4-dihydroquinoline-3-carboxamide (Compound III-d)
[0152] To a solution of 5-Amino-2-(tert-butyl-d
9)-4-(tert-butyl)-phenol (240 mg, 1.04 mmol), 4-oxo-1,4-dihydroquinoline-3-carboxylic
acid (purchased from Matrix Scientific, 99 mg, 0.521 mmol) and N,N-diisopropylethylamine
(181 µl, 1.04 mmol) in DMF (6.00 mL) was added HATU (198 mg, 0.521 mmol). The reaction
was stirred at room temperature for three hours then was diluted with saturated NaHCO
3 and extracted with ethyl acetate (3x50 mL). The combined organic extracts were washed
with water (3x20 mL), dried (Na
2SO
4 ), filtered, and concentrated in vacuo. The resulting residue was purified via column
chromatography (SiO
2, 0-70% ethyl acetate/heptanes) to afford N-(2-(tert-Butyl)-4-(tert-butyl-d
9)-5-hydroxyphenyl)-4-oxo-1,4-dihydroquinoline-3-carboxamide (Compound
III-d) (80 mg, 38% Yield) as a white solid.
1H NMR (d
6-DMSO, 400 MHz) δ 12.88 (s, 1H), 11.81 (s, 1H), 9.19 (s, 1H), 8.86 (s, 1H), 8.32 (dd,
J=8.1, 1.4 Hz, 1H), 7.86-7.77 (m, 1H), 7.75 (d, J=8.2 Hz, 1H), 7.51 (s, 1H), 7.15
(s, 1H), 7.09 (s, 1H) 1.37 (s, 9H); MS (ESI) 402.3 [(M+H)
+].
Example 5: Synthesis of 3-(6-(1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl)cyclopropanecarboxamido)-3-methylpyridin-2-yl)benzoic
acid (Compound IV)
[0153] Vitride
® (sodium bis(2-methoxyethoxy)aluminum hydride [or NaAlH
2(OCH
2CH
2OCH
3)
2], 65 wgt% solution in toluene) was purchased from Aldrich Chemicals. 2,2-Difluoro-1,3-benzodioxole-5-carboxylic
acid was purchased from Saltigo (an affiliate of the Lanxess Corporation).
Step 1: (2,2-Difluoro-1,3-benzodioxol-5-yl)-methanol
[0154]

[0155] Commercially available 2,2-difluoro-1,3-benzodioxole-5-carboxylic acid (1.0 eq) was
slurried in toluene (10 vol). Vitride
® (2 eq) was added via addition funnel at a rate to maintain the temperature at 15-25
°C. At the end of the addition, the temperature was increased to 40 °C for 2 hours
(h), then 10% (w/w) aqueous (aq) NaOH (4.0 eq) was carefully added via addition funnel,
maintaining the temperature at 40-50 °C. After stirring for an additional 30 minutes
(min), the layers were allowed to separate at 40 °C. The organic phase was cooled
to 20 °C, then washed with water (2 × 1.5 vol), dried (Na
2SO
4), filtered, and concentrated to afford crude (2,2-difluoro-1,3-benzodioxol-5-yl)-methanol
that was used directly in the next step.
Step 2: 5-Chloromethyl-2,2-difluoro-1,3-benzodioxole
[0156]

[0157] (2,2-Difluoro-1,3-benzodioxol-5-yl)-methanol (1.0 eq) was dissolved in MTBE (5 vol).
A catalytic amount of 4-(N,N-dimethyl)aminopyridine (DMAP) (1 mol %) was added and
SOCl
2 (1.2 eq) was added via addition funnel. The SOCl
2 was added at a rate to maintain the temperature in the reactor at 15-25 °C. The temperature
was increased to 30 °C for 1 h, and then was cooled to 20 °C. Water (4 vol) was added
via addition funnel while maintaining the temperature at less than 30 °C. After stirring
for an additional 30 min, the layers were allowed to separate. The organic layer was
stirred and 10% (w/v) aq NaOH (4.4 vol) was added. After stirring for 15 to 20 min,
the layers were allowed to separate. The organic phase was then dried (Na
2SO
4), filtered, and concentrated to afford crude 5-chloromethyl-2,2-difluoro-1,3-benzodioxole
that was used directly in the next step.
Step 3: (2,2-Difluoro-1,3-benzodioxol-5-yl)-acetonitrile
[0158]

[0159] A solution of 5-chloromethyl-2,2-difluoro-1,3-benzodioxole (1 eq) in DMSO (1.25 vol)
was added to a slurry of NaCN (1.4 eq) in DMSO (3 vol), while maintaining the temperature
between 30-40 °C. The mixture was stirred for 1 h, and then water (6 vol) was added,
followed by methyl
tert-butyl ether (MTBE) (4 vol). After stirring for 30 min, the layers were separated.
The aqueous layer was extracted with MTBE (1.8 vol). The combined organic layers were
washed with water (1.8 vol), dried (Na
2SO
4), filtered, and concentrated to afford crude (2,2-difluoro-1,3-benzodioxol-5-yl)-acetonitrile
(95%) that was used directly in the next step.
1H NMR (500 MHz, DMSO) δ 7.44 (br s, 1H), 7.43 (d,
J = 8.4 Hz, 1H), 7.22 (dd,
J = 8.2, 1.8 Hz, 1H), 4.07 (s, 2H).
Step 3b: Alternate Synthesis of (2,2-difluoro-1,3-benzodioxol-5-yl)-1-ethylacetate-acetonitrile
[0160]

[0161] A reactor was purged with nitrogen and charged with toluene (900 mL). The solvent
was degassed via nitrogen sparge for no less than 16 hours. To the reactor was then
charged Na
3PO
4 (155.7 g, 949.5 mmol), followed by bis(dibenzylideneacetone) palladium (0) (7.28
g, 12.66 mmol). A 10% w/w solution of
tert-butylphosphine in hexanes (51.23 g, 25.32 mmol) was charged over 10 minutes at 23
°C from a nitrogen purged addition funnel. The mixture was allowed to stir for 50
minutes, at which time 5-bromo-2,2-difluoro-1,3-benzodioxole (75 g, 316.5 mmol) was
added over 1 minute. After stirring for an additional 50 minutes, the mixture was
charged with ethyl cyanoacetate (71.6 g, 633.0 mmol) over 5 minutes, followed by water
(4.5 mL) in one portion. The mixture was heated to 70 °C over 40 minutes and analyzed
by HPLC every 1 to 2 hours for the percent conversion of the reactant to the product.
After complete conversion was observed (typically 100% conversion after 5 to 8 hours),
the mixture was cooled to 20 to 25 °C and filtered through a celite pad. The celite
pad was rinsed with toluene (2 × 450 mL), and the combined organics were concentrated
to 300 mL under vacuum at 60 to 65 °C. The concentrate was charged with DMSO (225mL)
and concentrated under vacuum at 70 to 80 °C until active distillation of the solvent
ceased. The solution was cooled to 20 to 25 °C and diluted to 900 mL with DMSO in
preparation for Step 3c.
1H NMR (500 MHz, CDCl
3) δ 7.16 - 7.10 (m, 2H), 7.03 (d,
J = 8.2 Hz, 1H), 4.63 (s, 1H), 4.19 (m, 2H), 1.23 (t,
J = 7.1 Hz, 3H).
Step 3c: Alternate Synthesis of (2,2-difluoro-1,3-benzodioxol-5-yl)-acetonitrile
[0162]

[0163] The DMSO solution of (2,2-difluoro-1,3-benzodioxol-5-yl)-1-ethylacetate-acetonitrile
from above was charged with 3 N HCl (617.3 mL, 1.85 mol) over 20 minutes while maintaining
an internal temperature less than 40 °C. The mixture was then heated to 75 °C over
1 hour and analyzed by HPLC every 1 to 2 hours for percent conversion. When a conversion
of greater than 99% was observed (typically after 5 to 6 hours), the reaction was
cooled to 20 to 25 °C and extracted with MTBE (2 × 525 mL), with sufficient time to
allow for complete phase separation during the extractions. The combined organic extracts
were washed with 5% NaCl (2 × 375 mL). The solution was then transferred to equipment
appropriate for a 1.5 to 2.5 Torr vacuum distillation that was equipped with a cooled
receiver flask. The solution was concentrated under vacuum at less than 60 °C to remove
the solvents. (2,2-Difluoro-1,3-benzodioxol-5-yl)-acetonitrile was then distilled
from the resulting oil at 125 to 130 °C (oven temperature) and 1.5 to 2.0 Torr. (2,2-Difluoro-1,3-benzodioxol-5-yl)-acetonitrile
was isolated as a clear oil in 66% yield from 5-bromo-2,2-difluoro-1,3-benzodioxole
(2 steps) and with an HPLC purity of 91.5% AUC (corresponds to a w/w assay of 95%).
1H NMR (500 MHz, DMSO) δ 7.44 (br s, 1H), 7.43 (d,
J = 8.4 Hz, 1H), 7.22 (dd,
J = 8.2, 1.8 Hz, 1H), 4.07 (s, 2H).
Step 4: (2,2-Difluoro-1,3-benzodioxol-5-yl)-cyclopropanecarbonitrile
[0164]

[0165] A mixture of (2,2-difluoro-1,3-benzodioxol-5-yl)-acetonitrile (1.0 eq), 50 wt % aqueous
KOH (5.0 eq) 1-bromo-2-chloroethane (1.5 eq), and Oct
4NBr (0.02 eq) was heated at 70 °C for 1 h. The reaction mixture was cooled, then worked
up with MTBE and water. The organic phase was washed with water and brine. The solvent
was removed to afford (2,2-difluoro-1,3-benzodioxol-5-yl)-cyclopropanecarbonitrile.
1H NMR (500 MHz, DMSO) δ 7.43 (d, J = 8.4 Hz, 1H), 7.40 (d, J = 1.9 Hz, 1H), 7.30
(dd, J = 8.4, 1.9 Hz, 1H), 1.75 (m, 2H), 1.53 (m, 2H).
Step 5: 1-(2,2-Difluoro-1,3-benzodioxol-5-yl)-cyclopropanecarboxylic acid
[0166]

[0167] (2,2-Difluoro-1,3-benzodioxol-5-yl)-cyclopropanecarbonitrile was hydrolyzed using
6 M NaOH (8 equiv) in ethanol (5 vol) at 80 °C overnight. The mixture was cooled to
room temperature and the ethanol was evaporated under vacuum. The residue was taken
up in water and MTBE, 1 M HCl was added, and the layers were separated. The MTBE layer
was then treated with dicyclohexylamine (DCHA) (0.97 equiv). The slurry was cooled
to 0 °C, filtered and washed with heptane to give the corresponding DCHA salt. The
salt was taken into MTBE and 10% citric acid and stirred until all the solids had
dissolved. The layers were separated and the MTBE layer was washed with water and
brine. A solvent swap to heptane followed by filtration gave 1-(2,2-difluoro-1,3-benzodioxol-5-yl)-cyclopropanecarboxylic
acid after drying in a vacuum oven at 50 °C overnight. ESI-MS m/z calc. 242.04, found
241.58 (M+1)+; 1HNMR (500 MHz, DMSO) δ 12.40 (s, 1H), 7.40 (d, J = 1.6 Hz, 1H), 7.30
(d, J = 8.3 Hz, 1H), 7.17 (dd, J = 8.3, 1.7 Hz, 1H), 1.46 (m, 2H), 1.17 (m, 2H).
Step 6: 1-(2,2-Difluoro-1,3-benzodioxol-5-yl)-cyclopropanecarbonyl chloride
[0168]

[0169] 1-(2,2-Difluoro-1,3-benzodioxol-5-yl)-cyclopropanecarboxylic acid (1.2 eq) is slurried
in toluene (2.5 vol) and the mixture was heated to 60 °C. SOCl
2 (1.4 eq) was added via addition funnel. The toluene and SOCl
2 were distilled from the reaction mixture after 30 minutes. Additional toluene (2.5
vol) was added and the resulting mixture was distilled again, leaving the product
acid chloride as an oil, which was used without further purification.
Step 7: tert-Butyl-3-(3-methylpyridin-2-yl)benzoate
[0170]

[0171] 2-Bromo-3-methylpyridine (1.0 eq) was dissolved in toluene (12 vol). K
2CO
3 (4.8 eq) was added, followed by water (3.5 vol). The resulting mixture was heated
to 65 °C under a stream of N
2 for 1 hour. 3-(t-Butoxycarbonyl)phenylboronic acid (1.05 eq) and Pd(dppf)Cl
2·CH
2Cl
2 (0.015 eq) were then added and the mixture was heated to 80 °C. After 2 hours, the
heat was turned off, water was added (3.5 vol), and the layers were allowed to separate.
The organic phase was then washed with water (3.5 vol) and extracted with 10% aqueous
methanesulfonic acid (2 eq MsOH, 7.7 vol). The aqueous phase was made basic with 50%
aqueous NaOH (2 eq) and extracted with EtOAc (8 vol). The organic layer was concentrated
to afford crude tert-butyl-3-(3-methylpyridin-2-yl)benzoate (82%) that was used directly
in the next step.
Step 8: 2-(3-(tert-Butoxycarbonyl)phenyl)-3-methylpyridine-1-oxide
[0172]

tert-Butyl-3-(3-methylpyridin-2-yl)benzoate (1.0 eq) was dissolved in EtOAc (6 vol).
Water (0. 3 vol) was added, followed by urea-hydrogen peroxide (3 eq). Phthalic anhydride
(3 eq) was then added portionwise to the mixture as a solid at a rate to maintain
the temperature in the reactor below 45 °C. After completion of the phthalic anhydride
addition, the mixture was heated to 45 °C. After stirring for an additional 4 hours,
the heat was turned off. 10% w/w aqueous Na
2SO
3 (1.5 eq) was added via addition funnel. After completion of Na
2SO
3 addition, the mixture was stirred for an additional 30 min and the layers separated.
The organic layer was stirred and 10% wt/wt aqueous. Na
2CO
3 (2 eq) was added. After stirring for 30 minutes, the layers were allowed to separate.
The organic phase was washed 13% w/v aq NaCl. The organic phase was then filtered
and concentrated to afford crude 2-(3-(tert-butoxycarbonyl)phenyl)-3-methylpyridine-1-oxide
(95%) that was used directly in the next step.
Step 9: tert-Butyl-3-(6-amino-3-methylpyridin-2-yl)benzoate
[0173]

[0174] A solution of 2-(3-(tert-butoxycarbonyl)phenyl)-3-methylpyridine-1-oxide (1 eq) and
pyridine (4 eq) in acetonitrile (8 vol) was heated to 70 °C. A solution of methanesulfonic
anhydride (1.5 eq) in MeCN (2 vol) was added over 50 min via addition funnel while
maintaining the temperature at less than 75 °C. The mixture was stirred for an additional
0.5 hours after complete addition. The mixture was then allowed to cool to ambient
temperature. Ethanolamine (10 eq) was added via addition funnel. After stirring for
2 hours, water (6 vol) was added and the mixture was cooled to 10 °C. After stirring
for 3 hours, the solid was collected by filtration and washed with water (3 vol),
2:1 acetonitrile/water (3 vol), and acetonitrile (2 × 1.5 vol). The solid was dried
to constant weight (<1% difference) in a vacuum oven at 50 °C with a slight N
2 bleed to afford tert-butyl-3-(6-amino-3-methylpyridin-2-yl)benzoate as a red-yellow
solid (53% yield).
Step 10: 3-(6-(1-(2,2-Difluorobenzo[d][1,3]dioxol-5-yl)-cyclopropanecarboxamido)-3-methylpyridin-2-yl)-t-butylbenzoate
[0175]

[0176] The crude acid chloride described above was dissolved in toluene (2.5 vol based on
acid chloride) and added via addition funnel to a mixture of tert-butyl-3-(6-amino-3-methylpyridin-2-yl)benzoate
(1 eq), DMAP, (0.02 eq), and triethylamine (3.0 eq) in toluene (4 vol based on tert-butyl-3-(6-amino-3-methylpyridin-2-yl)benzoate).
After 2 hours, water (4 vol based on tert-butyl-3-(6-amino-3-methylpyridin-2-yl)benzoate)
was added to the reaction mixture. After stirring for 30 minutes, the layers were
separated. The organic phase was then filtered and concentrated to afford a thick
oil of 3-(6-(1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl) cyclopropanecarboxamido)-3-methylpyridin-2-yl)-t-butylbenzoate
(quantitative crude yield). Acetonitrile (3 vol based on crude product) was added
and distilled until crystallization occurs. Water (2 vol based on crude product) was
added and the mixture stirred for 2 h. The solid was collected by filtration, washed
with 1: 1 (by volume) acetonitrile/water (2 × 1 volumes based on crude product), and
partially dried on the filter under vacuum. The solid was dried to a constant weight
(<1% difference) in a vacuum oven at 60 °C with a slight N
2 bleed to afford 3-(6-(1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl) cyclopropanecarboxamido)-3-methylpyridin-2-yl)-t-butylbenzoate
as a brown solid.
Step 11: 3-(6-(1-(2,2-Difluorobenzo[d][1,3]dioxol-5-yl)cyclopropanecarboxamido)-3-methylpyridin-2-yl)benzoic
acid • HCl salt
[0177]

[0178] To a slurry of 3-(6-(1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl) cyclopropanecarboxamido)-3-methylpyridin-2-yl)-t-butylbenzoate
(1.0 eq) in MeCN (3.0 vol) was added water (0.83 vol) followed by concentrated aqueous
HCl (0.83 vol). The mixture was heated to 45 ± 5 °C. After stirring for 24 to 48 h,
the reaction was complete, and the mixture was allowed to cool to ambient temperature.
Water (1.33 vol) was added and the mixture stirred. The solid was collected by filtration,
washed with water (2 × 0.3 vol), and partially dried on the filter under vacuum. The
solid was dried to a constant weight (<1% difference) in a vacuum oven at 60 °C with
a slight N
2 bleed to afford 3-(6-(1-(2,2-difluorobenzo[d][1,3]dioxol-5-yl) cyclopropanecarboxamido)-3-methylpyridin-2-yl)benzoic
acid • HCl as an off-white solid.
Table 7: Physical data for Compound IV
| Compound |
LC/MS M+1 |
LC/RT minutes |
NMR |
| Compound IV |
453.3 |
1.93 |
1HNMR (400 MHz, DMSO-d6) 9.14 (s, 1H), 7.99-7.93 (m, 3H), 7.80-7.78 (m,1H), 7.74-7.72
(m,1H), 7.60-7.55 (m,2H), 7.41-7.33 (m,2H), 2.24 (s, 3H), 1.53-1.51 (m, 2H), 1.19-1.17
(m, 2H). |
Example 6. Preparation of a Tablet containing 5 mg of Compound I
[0179] Microcrystalline cellulose is passed through a stainless steel screen (30 mesh) and
210.1 g is charged into a 10L Bohle Bin. Compound
I is passed through a stainless steel screen (30 mesh) and 210.0g is charged into the
10L Bohle Bin. The bin is sealed and the components are blended for 2 min at a speed
of 32 RPM to yield a microcrystalline cellulose/Compound
I blend. The microcrystalline cellulose/Compound
I blend is discharged into a stainless steel container. The following materials are
sieved through a stainless steel 30 mesh screen and added to the 10 L Bohle bin in
this order: lactose (approximately half of 1022.2 g), microcrystalline cellulose (approximately
half of 812 g), microcrystalline cellulose/Compound
I blend, polyvinylpyrrolidone/vinyl acetate (210.1 g), croscarmellose sodium (133 g),
microcrystalline cellulose (the remaining half portion from the 812 g amount), and
lactose (the remaining half portion from the 1022.2 g amount). The bin is sealed and
the components are blended for 18.5 min at a speed of 32 RPM. Sodium stearyl fumarate
pruv
® is passed through a 60 mesh stainless steel and 53.1 g is charged into the Bohle
bin. The bin is sealed and the components are blended for 4 min at a speed of 32 RPM.
The bin is tested for homogeneity. The blend is added to a Piccola Tablet press and
compressed into tablets weighing 67.0 mg.
Table 8: Compound I tablet composition
| Component |
% w/w tablet (approx.) |
Tablet quantity (approx.) |
| Compound I (Ca salt) |
8 |
5 mg |
| Microcrystalline cellulose (pre-blend) |
8 |
5 mg |
| polyvinylpyrrolidone/vinyl acetate |
8 |
5 mg |
| Microcrystalline cellulose (tablet-blend) |
31 |
21 mg |
| Lactose monohydrate |
38 |
26 mg |
| croscarmellose sodium |
5 |
3 mg |
| Sodium stearyl fumarate pruv® |
2 |
1 mg |
Example 7. Bioactivity Assay
Solutions
[0180] Base medium (ADF+++) consisted of Advanced DMEM/Ham's F12, 2 mM Glutamax, 10 mM HEPES,
1µ/ml penicillin/streptomycin.
[0181] Intestinal enteroid maintenance medium (IEMM) consisted of ADF+++, 1x B27 supplement,
1× N2 supplement, 1.25 mM N-acetyl cysteine, 10 mM Nicotinamide, 50 ng/mL hEGF, 10
nM Gastrin, 1 µg/mL hR-spondin-1, 100 ng/mL hNoggin, TGF-b type 1 inhibitor A-83-01,
100 µg/mL Primocin, 10 µM P38 MAPK inhibitor SB202190.
[0182] Bath 1 Buffer consisted of 1 mM MgCl
2, 160 mM NaCl, 4.5 mM KCl, 10 mM HEPES, 10 mM Glucose, 2 mM CaCl
2.
[0183] Chloride Free Buffer consisted of 1 mM Magnesium Gluconate, 2 mM Calcium Gluconate,
4.5 mM Potassium Gluconate, 160 mM Sodium Gluconate, 10 mM HEPES, 10 mM Glucose.
[0184] Bath1 Dye Solution consisted of Bath 1 Buffer, 0.04% Pluronic F127, 20 µM Methyl
Oxonol, 30 µM CaCCinh-A01, 30 µM Chicago Sky Blue.
[0185] Chloride Free Dye Solution consisted of Chloride Free Buffer, 0.04% Pluronic F127,
20 µM Methyl Oxonol, 30 µM CaCCinh-A01, 30 µM Chicago Sky Blue.
[0186] Chloride Free Dye Stimulation Solution consisted of Chloride Free Dye Solution, 10
µM forskolin, 100 µM IBMX, and 300 nM Compound
III.
Cell Culture
[0187] Human intestinal epithelial enteroid cells were obtained from the Hubrecht Institute
for Developmental Biology and Stem Cell Research, Utrecht, The Netherlands and expanded
in T-Flasks as previously described (
Dekkers JF, Wiegerinck CL, de Jonge HR, Bronsveld I, Janssens HM, de Winter-de Groot
KM, Brandsma AM, de Jong NWM, Bijvelds MJC, Scholte BJ, Nieuwenhuis EES, van den Brink
S, Clevers H, van der Ent CK, Middendorp S and M Beekman JM. A functional CFTR assay
using primary cystic fibrosis intestinal organoids. Nat Med. 2013 Jul;19(7):939-45.
Enteroid Cell Harvesting and Seeding
[0188] Cells were recovered in cell recovery solution, collected by centrifugation at 650
rpm for 5 min at 4°C, resuspended in TryPLE and incubated for 5 min at 37°C. Cells
were then collected by centrifugation at 650 rpm for 5 min at 4°C and resuspended
in IEMM containing 10 µM ROCK inhibitor (RI). The cell suspension was passed through
a 40 µm cell strainer and resuspended at 1x106 cells/mL in IEMM containing 10 µM RI.
Cells were seeded at 5000 cells/well into multi-well plates and incubated for overnight
at 37°C, 95% humidity and 5% CO
2 prior to assay.
Membrane Potential Dye Assay
[0189] Enteroid cells were incubated with test compound in IEMM for 18-24 hours at 37°C,
95% humidity and 5% CO
2. Following compound incubations, a membrane potential dye assay was employed using
a FLIPR Tetra to directly measure the potency and efficacy of the test compound on
CFTR-mediated chloride transport following acute addition of 10 µM forskolin and 300
nM Compound
III. Briefly, cells were washed 5 times in Bath 1 Buffer. Bath 1 Dye Solution was added
and the cells were incubated for 25 min at room temperature. Following dye incubation,
cells were washed 3 times in Chloride Free Dye Solution. Chloride transport was initiated
by addition of Chloride Free Dye Stimulation Solution and the fluorescence signal
was read for 15 min. The CFTR-mediated chloride transport for each condition was determined
from the AUC of the fluorescence response to acute forskolin and 300 nM Compound
III stimulation. Chloride transport was then expressed as a percentage of the chloride
transport following treatment with 3 µM Compound
I, 3 µM Compound
II, and 300 nM acute Compound
III triple combination control (% Activity).
[0190] The following represents the data in Table 9:
Max Activity: +++ is >60%; ++ is 30-60%; + is <30%. EC50: +++ is <1 µM; ++ is 1-3
µM; + is >3 µM; and ND is "not determined."
Table 9: Assay Data for Compound I
| Molecule |
Max. Activity |
EC50 |
| Compound I |
+++ |
+++ |
Example 8.
Compound I Increases Chloride Transport Alone and in Combination With Compound II
and/or Compound III in F508del/F508del HBE and F508del/MF HBE
[0191] Ussing chamber studies were conducted to measure F508del CFTR mediated chloride transport
in HBE cells derived from 3 F508del homozygous donors and 5 F508del/MF donors (G542X,
3 donors; E585X, 1 donor; 3905InsT, 1 donor). As a positive control, maximally effective
concentrations of N-(benzenesulfonyl)-6-[3-[2-[1-(trifluoromethyl)cyclopropyl]ethoxy]pyrazol-1-yl]-2-[(4S)-2,2,4-trimethylpyrrolidin-1-yl]pyridine-3-carboxamide
(see
WO 2018/064632) and N-[(6-amino-2-pyridyl)sulfonyl]-6-(3-fluoro-5-isobutoxy-phenyl)-2-[(4S)-2,2,4-trimethylpyrrolidin-1-yl]pyridine-3-carboxamide
(see
WO 2016/057572) in combination with Compound
II/Compound
III were included in each experiment.
[0192] In these CF cell lines, CFTR-mediated chloride transport was low in the absence of
CFTR modulators, which is consistent with little-to-no CFTR at the cell surface. Treatment
with Compound
I alone for 16 to 24 hours caused a modest increase in chloride transport in both F508del/F508del
HBE and F508del/MF HBE cells. The combination of Compound
I and Compound
II further increased chloride transport when compared to Compound
I alone and was similar to Compound
II/Compound
III. Addition of Compound
III strongly potentiated chloride transport in the presence of Compound
I or in combination with Compound
I/Compound
II. Synergy analyses showed that the effect of Compound
I was highly synergistic with a fixed concentration of Compound
III or Compound
II/Compound
III and was modestly synergistic with a fixed combination of Compound
II. At most Compound
I concentrations, Compound
I/Compound
II/Compound
III increased chloride transport more than Compound
I/Compound
II or Compound
I/Compound
III. However, the efficacy of Compound
I/Compound
III and Compound
I/Compound
II/Compound
III was similar at their respective EC90 values. The respective EC90 values under conditions
that maximally activate CFTR for Compound
I/Compound
III and Compound
I/Compound
II/ Compound
III were 0.848 µM and 0.152 µM in F508del/F508del HBE and 1.15 µM and 0.122 µM in F508del/MF
HBE.
[0193] Following a single oral administration of Compound
I in male animals, Compound
I mean t
max values were 9 hours in rats, 4 hours in dogs, and 3 hours in monkeys. Mean oral bioavailability
(F) was low to moderate in rats (76.9%), dogs (49.7%), and monkeys (12.9%).
Compound I Pharmacokinetic Parameters Following a Single Oral Administration of Compound
I in Male Rats, Dogs, and Monkeys
[0194]
| Species |
Nominal Dose (mg/kg) |
AUC0-∞ (µg•h/mL) |
Cmax (µg/mL) |
tmax (h) |
t1/2 (h) |
F (%) |
| Rat |
3 |
31.9 ± 11.1 |
1.10 ± 0.337 |
9.33 ± 2.31 |
22.6 ± 2.83 |
76.9 |
| Dog |
1 |
38.5 ± 4.70 |
2.44 ± 0.178 |
4.00 ± 0.00 |
11.1 ± 1.09 |
49.7 |
| Monkey |
1 |
0.795 ± 0.233 |
0.102 ± 0.0132 |
3.33 ± 1.15 |
3.07 ± 1.16 |
12.9 |
| Note: Data are presented as mean ± SD (n = 3). |
[0195] As the dose increased, systemic exposure of Compound
I increased in a more than dose-proportional manner in rats and dogs. Dose-normalized
exposure was higher in female rats than male rats. In dogs, systemic exposures to
Compound
I were similar in both sexes. Following repeated oral administration of Compound
I for 28 days in rats and dogs, accumulation of Compound
I exposure was observed. Systemic exposure to Compound
I on Day 28 was higher than on Day 1 (Day 28/Day 1 AUC
0-24h ratio ranged from 1.63 to 2.70 in male rats, 5.01 to 8.26 in female rats, 1.73 to
2.64 in male dogs, and 1.82 to 2.23 in female dogs).
Example 9. Safety and Efficacy Study of Compound I
[0196] A safety analysis of an ongoing clinical study was performed for 37 subjects in Cohorts
A1 to A5, 33 subjects in Cohort B, and 17 subjects in Cohort C, who were exposed to
at least 1 dose of study drug (Compound
I or placebo) as a monotherapy and as part of a triple combination with Compound
II or Compound
III. Compound
I was generally safe and well-tolerated up to a dose of 60 mg qd in monotherapy and
20 mg qd in triple combination with Compound
II and Compound
III.
Planned Efficacy studies
[0197] This is a Phase 2, 3-part, randomized, double-blind, placebo- and TEZ/IVA-controlled,
proof-of-concept study of Compound
I. Study parts may be conducted in parallel or sequentially. Randomization will be stratified
by ppFEV
1.
Part 1: Subjects with F508del/MF genotypes
[0198] Part 1 evaluates Compound
I in triple combination with Compound
II and Compound
III-d as shown in the Table below.
[0199] The Washout Period (18 ± 3 days) is included to enable a more thorough evaluation
of Compound
I exposure-response relationships by conducting PK and PD assessments during the Compound
I washout.
Planned Doses
[0200] • The planned Compound
I doses of 5 mg, 10 mg, and 20 mg qd may be adjusted based on emerging data.
• The dosage of Compound
II will be 100 mg qd (once daily) and Compound
III-d will be 150 mg qd.
| |
Treatment Period (4 weeks) |
Washout Period (18 ± 3 days) |
|
| Screening Period (4 weeks) |
TC-20 mg (Cpd I/Cpd II/Cpd III-d) |
N = 18 |
Cpd II/Cpd III-d |
Safety Follow-up Period (4 weeks) |
| TC-10 mg (Cpd I/Cpd II/Cpd III-d) |
N = 18 |
| TC-5 mg (Cpd I/Cpd II/Cpd III-d) |
N = 9 |
| Triple Placebo |
N = 9 |
Dual Pbo |
Part 2 (Optional): Subjects with F508del/ F508del genotype
[0201] All subjects are required to complete the Compound
II/ Compound
III Run-in Period to establish a reliable on-treatment (Cpd
II/Cpd
III) baseline. The 4-week Washout Period is included to evaluate the effect on PD and
efficacy endpoints as subjects step down from triple combination to Cpd
II/Cpd
III, after the Compound
I washout.
Planned Doses
[0202]
- Part 2 will evaluate the same Compound I dose (20 mg qd) used in Part 1. This dose may be adjusted downward based on emerging
data from Part D of Study 001.
- The dosage of Compound II will be 100 mg qd and Compound III-d will be 150 mg qd.
- The dosage of Compound II/Compound III will be Compound II 100 mg qd/ Compound III 150 mg every 12 hours (q12h)
| |
Run-in Period (4 weeks) |
Treatment Period (4 weeks) |
Washout Period (4 weeks) |
|
| Screening Period (4 weeks) |
Cpd II/Cpd |
TC-20 mg (Cpd I/Cpd II/Cpd III-d) |
N = 18 |
Cpd II/Cpd III |
Safety Follow-up Period (4 weeks) |
| Placebo + Cpd II/Cpd III |
N = 9 |
Part 3 (Optional): Subjects with F508del/MF genotypes
[0203] The Washout Period (18 ± 3 days) is included to enable a more thorough evaluation
of Compound
I exposure-response relationships by conducting PK and PD assessments during the Compound
I washout.
Planned Doses
[0204]
- Part 3 will evaluate the same Compound I dose (20 mg qd) used in Part 1. This dose may be adjusted based on emerging data.
- The dosage of Compound II/Compound III will be Compound II 100 mg qd/ Compound III 150 mg every 12 hours (q12h)
| |
Treatment Period (4 weeks) |
Washout Period (18 ± 3 days) |
| Screening Period (4 weeks) |
TC-20 mg (Cpd I/Cpd II/Cpd III) |
N = 18 |
Cpd II/Cpd III |
Safety Follow-up Period (4 weeks) |
| Triple Placebo |
N = 9 |
Dual Pbo |
Other Embodiments
[0205] The foregoing discussion discloses and describes merely exemplary embodiments of
this disclosure. One skilled in the art will readily recognize from such discussion
and from the accompanying drawings and claims, that various changes, modifications
and variations can be made. The scope of the invention is defined in the following
claims.