[0001] The present invention relates to a vaccine, especially a combination vaccine providing
at least a first and a second antigenic function, wherein the antigenic functions
are encoded by at least one mRNA encoding at least one or more proteins or fragments,
variants or derivatives of proteins awarding antigenic function, wherein the first
antigenic function being a Fusion (F) protein or a fragment, variant or derivative
of a Fusion (F) protein derived from the virus family
Paramyxoviridae and the second antigenic function being an Hemagglutinin (HA) protein or a fragment,
variant or derivative of an Hemagglutinin (HA) protein derived from the virus family
Orthomyxoviridae. Furthermore, the present invention is directed to a kit or kit of parts comprising
the components of said combination vaccine and to said combination vaccine for use
in a method of prophylactic or therapeutic treatment of diseases, particularly in
the prevention or treatment of infectious diseases like RSV and influenza.
[0003] In this context, RSV which belongs to the virus family of
Paramyxoviridae, is one of the most contagious pathogens and makes a substantial contribution to severe
respiratory tract infections in infants, the elderly and immunocompromised patients.
[0004] As RSV, human parainfluenza viruses (PIV) belong to the virus family of
Paramyxoviridae and are regarded as important pathogens likewise affecting the respiratory tract
particularly of infants, children and the elderly. The subtypes 1 and 2 of PIV are
the principal causes of croup, whereas subtype 3 causes more severe lower respiratory
tract illness with RSV-like symptoms including pneumonia and bronchiolitis.
[0005] Paramyxoviruses are also responsible for a range of diseases in other animal species,
for example canine distemper virus (dogs), phocine distemper virus (seals), cetacean
morbillivirus (dolphins and porpoises), Newcastle disease virus (birds), and rinderpest
virus (cattle). Some paramyxoviruses such as the henipaviruses are zoonotic pathogens,
occurring naturally in an animal host, while being also able to infect humans. Hendra
virus (HeV) and Nipah virus (NiV) in the genus Henipavirus have emerged in humans
and are contagious, highly virulent, and capable of infecting a number of mammalian
species and causing potentially fatal disease.
[0006] Paramyxoviridae typically do express a so called Fusion (F) protein which projects from the virus
envelope surface and mediates cell entry by inducing a fusion process between the
virus and the cell to be infected.
[0007] Influenza viruses, however, belong to the virus family
Orthomyxoviridae and pose a high risk especially for infants, children and the elderly. Influenza
viruses possess a segmented, negative-stranded RNA genome and are divided into three
main types A, B, and C, of which type A is the most prominent one in humans. Influenza
A viruses can be further subdivided based on different forms of the two surface glycoproteins
Hemagglutinin (HA) and Neuraminidase (NA). The impact of seasonal influenza, characteristically
a febrile disease with respiratory syndromes, has been estimated at 25-50 million
cases per year worldwide. Due to the possibility of re-assortment of genetic material
new variants of influenza viruses can emerge sporadically and spread worldwide (pandemic).
Such re-assortment occurs most readily in pigs ("mixing vessels") resulting e.g. in
the genesis of the swine-origin H1N1 in 2009 ("swine flu").
[0008] Currently, there are no approved vaccines against parainfluenza virus infection available;
while available influenza vaccines are subunit, inactivated split or whole virion
vaccines propagated in cell culture or chicken eggs which are not recommended for
infants and only limited recommended for pregnant women.
[0010] Recent studies with animal models demonstrated that sufficient amounts of neutralising
antibodies targeting RSV F protein limit viral replication leading to a less severe
course of disease (
Singh, S.R. et al., 2007. Immunogenicity and efficacy of recombinant RSV-F vaccine
in a mouse model. Vaccine, 25(33), S.6211-6223.,
Zhan, X. et al., 2007. Respiratory syncytial virus (RSV) F protein expressed by recombinant
Sendai virus elicits B-cell and T-cell responses in cotton rats and confers protection
against RSV subtypes A and B. Vaccine, 25(52), S.8782-8793.,
Vaughan, K., et al., 2005. DNA immunization against respiratory syncytial virus (RSV)
in infant rhesus monkeys. Vaccine, 23(22), S.2928-2942).
[0012] Despite the above mentioned humanised monoclonal antibody, live-attenuated vaccine
viruses were developed which elicit a strong immune response, but which are not recommended
for use in the specific target groups (infants, children, the elderly and immunocompromised
patients). Also, DNA vectors expressing RSV F protein which bears B-cell epitopes
were used to induce the production of neutralizing antibodies. In this context,
WO 2008/077527 and
WO 96/040945 disclose vectors comprising DNA sequences encoding RSV F protein for the use as vaccines.
However, the use of DNA as a vaccine may be dangerous due to unwanted insertion into
the genome, possibly leading to interruption of functional genes and cancer or the
formation of anti-DNA antibodies.
[0013] Furthermore, co-administration of vaccines based on polypeptides and/or DNA plasmids
against different respiratory diseases has previously been reported. For example
WO 2011/030218 discloses immunogenic compositions comprising viral (RSV and influenza) and bacterial
(pneumococcus) immunogens,
WO 00/35481 discloses combinations of RSV F, G and matrix proteins with a non-virulent influenza
virus preparation, and
WO 2010/149743 discloses combinations of F proteins derived from human metapneumovirus, parainfluenza
virus and RSV. Furthermore, Talaat
et al. (
Talaat, A.M. et al. 2001. A combination vaccine confers full protection against co-infections
with influenza, herpes simplex and respiratory syncytial viruses. Vaccine, 20(3-4),
5.538-544) disclose a combination of DNA plasmid-driven vaccines against RSV, Herpes simplex
virus (HSV) and Influenza A. Such a strategy, however, still requires administration
of DNA based vectors. A further drawback, however, is the unknown compatibility between
different co-administered novel vaccines e.g. by antigen competition.
[0014] Taken together, so far no approved RSV vaccine, especially no combination vaccine
against additional respiratory diseases like influenza is available which can be administered
particularly to the target groups (infants, children, the elderly and immunocompromised
patients) without safety-concerns.
[0015] With respect to the problems and disadvantages of the known prior art as cited above,
it is the object of the invention to provide a further vaccine or possibly even an
improved vaccine. Particularly, it is the object of the invention to provide a (combination)
vaccine against respiratory diseases caused by viruses of the
Paramyxoviridae and/or the
Orthomyxoviridae family, more particularly caused by RSV and/or influenza viruses.
[0016] Further, it is the object of the invention to provide a pharmaceutical composition
or a kit comprising the (combination) vaccine or the respective components thereof.
It is an object to provide a (combination) vaccine for use in a method of treatment
of infections caused by viruses of the virus families
Paramyxoviridae, e.g. RSV, and/or
Orthomyxoviridae, e.g. Influenza virus.
[0017] It is an object of the invention to provide a vaccine that can be used as a combination
vaccine against respiratory diseases caused by members of the virus families
Paramyxoviridae and
Orthomyxoviridae, particularly respiratory syncytial virus (RSV), parainfluenza viruses 1-3 (PIV),
and Influenza A and B viruses and which induce a balanced immune response, i.e. a
humoral and a cellular immune response.
[0018] Furthermore, it is the object of the invention to provide a method for the manufacturing
of such a combination vaccine.
[0019] Likewise it is an object to provide a pharmaceutical composition or a vaccine that
can be used as a vaccine for high risk groups like infants, children, the elderly
or immunocompromised patients targeting the above mentioned pathogenic viruses in
parallel, i.e. RSV, Parainfluenza and Influenza. Particularly, in the case of pre-term
neonates it would be desirable that the vaccine could be applied as soon as possible
after birth without safety-concerns or loss of efficacy.
[0020] These objects are solved by the subject matter of the present invention, in particular
by the subject matter of the attached claims.
[0021] For the sake of clarity and readability the following scientific background information
and definitions are provided. Any technical features disclosed thereby can be part
of each and every embodiment of the invention. Additional definitions and explanations
can be provided in the context of this disclosure.
[0022] Genome of RSV: RSV has 10 genes encoding 11 proteins-there are 2 open reading frames of M2. NS1
and NS2 inhibit type I interferon activity. N encodes nucleocapsid protein that associates
with the genomic RNA forming the nucleocapsid. M encodes the Matrix protein required
for viral assembly. SH, G and F form the viral coat. The "G" protein is a surface
protein that is heavily glycosylated. It functions as the attachment protein. The
"F" protein is another important surface protein; F mediates fusion, allowing entry
of the virus into the cell cytoplasm and also allowing the formation of syncytia.
The "F" protein is homologous in both subtypes of RSV; antibodies directed against
the "F" protein are neutralizing. In contrast, the "G" protein differs considerably
between the two subtypes. M2 is the second matrix protein also required for transcription,
it encodes M2-1 (elongation factor) and M2-2 (transcription regulation), M2 contains
CD8 epitopes. L encodes the RNA polymerase. The phosphoprotein P is a cofactor for
L.
[0023] Genome of Influenza: Despite of all variations, the viral particles of all influenza viruses are similar
in composition. These are made of a viral envelope containing two main types of glycoproteins,
wrapped around a central core. The central core contains the viral RNA genome and
other viral proteins that package and protect this RNA. Unusually for a virus, its
genome is not a single piece of nucleic acid; instead, it contains seven or eight
pieces of segmented negative-sense RNA, each piece of RNA containing either one or
two genes, which code for a gene product (protein). For example, the influenza A genome
contains 11 genes on eight pieces of RNA, encoding 11 proteins: hemagglutinin (HA),
neuraminidase (NA), nucleoprotein (NP), M1, M2, NS1, NS2 (NEP: nuclear export protein),
PA, PB1 (polymerase basic 1), PB1-F2 and PB2. Hemagglutinin (HA) and neuraminidase
(NA) are the two large glycoproteins on the outside of the viral particles. HA is
a lectin that mediates binding of the virus to target cells and entry of the viral
genome into the target cell, while NA is involved in the release of progeny virus
from infected cells, by cleaving sugars that bind the mature viral particles. Furthermore,
they are antigens to which antibodies can be raised. Influenza A viruses are classified
into subtypes based on antibody responses to HA and NA. These different types of HA
and NA form the basis of the H and N distinctions in, for example, H5N1. There are
16 H and 9 N subtypes known, but only H 1, 2 and 3, and N 1 and 2 are commonly found
in humans.
[0024] Adaptive immune response: The adaptive immune response is typically understood to be antigen-specific. Antigen
specificity allows for the generation of responses that are tailored to specific antigens,
pathogens or pathogen-infected cells. The ability to mount these tailored responses
is maintained in the body by "memory cells". Should a pathogen infect the body more
than once, these specific memory cells are used to quickly eliminate it. In this context,
the first step of an adaptive immune response is the activation of naive antigen-specific
T cells or different immune cells able to induce an antigen-specific immune response
by antigen-presenting cells. This occurs in the lymphoid tissues and organs through
which naive T cells are constantly passing. Cell types that can serve as antigen-presenting
cells are inter alia dendritic cells, macrophages, and B cells. Each of these cells
has a distinct function in eliciting immune responses. Dendritic cells take up antigens
by phagocytosis and macropinocytosis and are stimulated by contact with e.g. a foreign
antigen to migrate to the local lymphoid tissue, where they differentiate into mature
dendritic cells. Macrophages ingest particulate antigens such as bacteria and are
induced by infectious agents or other appropriate stimuli to express MHC molecules.
The unique ability of B cells to bind and internalize soluble protein antigens via
their receptors may also be important to induce T cells. Presenting the antigen on
MHC molecules leads to activation of T cells which induces their proliferation and
differentiation into armed effector T cells. The most important function of effector
T cells is the killing of infected cells by CD8+ cytotoxic T cells and the activation
of macrophages by Th1 cells which together make up cell-mediated immunity, and the
activation of B cells by both Th2 and Th1 cells to produce different classes of antibody,
thus driving the humoral immune response. T cells recognize an antigen by their T
cell receptors which do not recognize and bind antigen directly, but instead recognize
short peptide fragments e.g. of pathogen-derived protein antigens, which are bound
to MHC molecules on the surfaces of other cells.
[0025] Adaptive immune system: The adaptive immune system is composed of highly specialized, systemic cells and
processes that eliminate or prevent pathogenic growth. The adaptive immune response
provides the vertebrate immune system with the ability to recognize and remember specific
pathogens (to generate immunity), and to mount stronger attacks each time the pathogen
is encountered. The system is highly adaptable because of somatic hypermutation (a
process of increased frequency of somatic mutations), and V(D)J recombination (an
irreversible genetic recombination of antigen receptor gene segments). This mechanism
allows a small number of genes to generate a vast number of different antigen receptors,
which are then uniquely expressed on each individual lymphocyte. Because the gene
rearrangement leads to an irreversible change in the DNA of each cell, all of the
progeny (offspring) of that cell will then inherit genes encoding the same receptor
specificity, including the Memory B cells and Memory T cells that are the keys to
long-lived specific immunity. Immune network theory is a theory of how the adaptive
immune system works, that is based on interactions between the variable regions of
the receptors of T cells, B cells and of molecules made by T cells and B cells that
have variable regions.
[0026] Adjuvant /
adjuvant component: An adjuvant or an adjuvant component in the broadest sense is typically a (e.g. pharmacological
or immunological) agent or composition that may modify, e.g. enhance, the efficacy
of other agents, such as a drug or vaccine. Conventionally the term refers in the
context of the invention to a compound or composition that serves as a carrier or
auxiliary substance for immunogens and/or other pharmaceutically active compounds.
It is to be interpreted in a broad sense and refers to a broad spectrum of substances
that are able to increase the immunogenicity of antigens incorporated into or co-administered
with an adjuvant in question. In the context of the present invention an adjuvant
will preferably enhance the specific immunogenic effect of the active agents of the
present invention. Typically, "adjuvant" or "adjuvant component" has the same meaning
and can be used mutually. Adjuvants may be divided, e.g., into immuno potentiators,
antigenic delivery systems or even combinations thereof.
[0027] The term "adjuvant" is typically understood not to comprise agents which confer immunity
by themselves. An adjuvant assists the immune system unspecifically to enhance the
antigen-specific immune response by e.g. promoting presentation of an antigen to the
immune system or induction of an unspecific innate immune response. Furthermore, an
adjuvant may preferably e.g. modulate the antigen-specific immune response by e.g.
shifting the dominating Th2-based antigen specific response to a more Th1-based antigen
specific response or vice versa. Accordingly, an adjuvant may favourably modulate
cytokine expression/secretion, antigen presentation, type of immune response etc.
[0028] Antigen: According to the present invention, the term "antigen" refers typically to a substance
which may be recognized by the immune system and may be capable of triggering an antigen-specific
immune response, e.g. by formation of antibodies or antigen-specific T-cells as part
of an adaptive immune response. An antigen may be a protein or peptide. In this context,
the first step of an adaptive immune response is the activation of naive antigen-specific
T cells by antigen-presenting cells. This occurs in the lymphoid tissues and organs
through which naive T cells are constantly passing. The three cell types that can
serve as antigen-presenting cells are dendritic cells, macrophages, and B cells. Each
of these cells has a distinct function in eliciting immune responses. Tissue dendritic
cells take up antigens by phagocytosis and macropinocytosis and are stimulated by
infection to migrate to the local lymphoid tissue, where they differentiate into mature
dendritic cells. Macrophages ingest particulate antigens such as bacteria and are
induced by infectious agents to express MHC class II molecules. The unique ability
of B cells to bind and internalize soluble protein antigens via their receptors may
be important to induce T cells. By presenting the antigen on MHC molecules leads to
activation of T cells which induces their proliferation and differentiation into armed
effector T cells. The most important function of effector T cells is the killing of
infected cells by CD8
+ cytotoxic T cells and the activation of macrophages by TH1 cells which together make
up cell-mediated immunity, and the activation of B cells by both TH2 and TH1 cells
to produce different classes of antibody, thus driving the humoral immune response.
T cells recognize an antigen by their T cell receptors which does not recognize and
bind antigen directly, but instead recognize short peptide fragments e.g. of pathogens'
protein antigens, which are bound to MHC molecules on the surfaces of other cells.
[0029] T cells fall into two major classes that have different effector functions. The two
classes are distinguished by the expression of the cell-surface proteins CD4 and CD8.
These two types of T cells differ in the class of MHC molecule that they recognize.
There are two classes of MHC molecules - MHC class I and MHC class II molecules -
which differ in their structure and expression pattern on tissues of the body. CD4
+ T cells bind to a MHC class II molecule and CD8
+ T cells to a MHC class I molecule. MHC class I and MHC class II molecules have distinct
distributions among cells that reflect the different effector functions of the T cells
that recognize them. MHC class I molecules present peptides of cytosolic and nuclear
origin e.g. from pathogens, commonly viruses, to CD8
+ T cells, which differentiate into cytotoxic T cells that are specialized to kill
any cell that they specifically recognize. Almost all cells express MHC class I molecules,
although the level of constitutive expression varies from one cell type to the next.
But not only pathogenic peptides from viruses are presented by MHC class I molecules,
also self-antigens like tumour antigens are presented by them. MHC class I molecules
bind peptides from proteins degraded in the cytosol and transported in the endoplasmic
reticulum. The CD8
+ T cells that recognize MHC class I:peptide complexes at the surface of infected cells
are specialized to kill any cells displaying foreign peptides and so rid the body
of cells infected with viruses and other cytosolic pathogens. The main function of
CD4
+ T cells (CD4
+ helper T cells) that recognize MHC class II molecules is to activate other effector
cells of the immune system. Thus MHC class II molecules are normally found on B lymphocytes,
dendritic cells, and macrophages, cells that participate in immune responses, but
not on other tissue cells. Macrophages, for example, are activated to kill the intravesicular
pathogens they harbour, and B cells to secrete immunoglobulins against foreign molecules.
MHC class II molecules are prevented from binding to peptides in the endoplasmic reticulum
and thus MHC class II molecules bind peptides from proteins which are degraded in
endosomes. They can capture peptides from pathogens that have entered the vesicular
system of macrophages, or from antigens internalized by immature dendritic cells or
the immunoglobulin receptors of B cells. Pathogens that accumulate in large numbers
inside macrophage and dendritic cell vesicles tend to stimulate the differentiation
of TH1 cells, whereas extracellular antigens tend to stimulate the production of TH2
cells. TH1 cells activate the microbicidal properties of macrophages and induce B
cells to make IgG antibodies that are very effective of opsonising extracellular pathogens
for ingestion by phagocytic cells, whereas TH2 cells initiate the humoral response
by activating naive B cells to secrete IgM, and induce the production of weakly opsonising
antibodies such as IgG1 and IgG3 (mouse) and IgG2 and IgG4 (human) as well as IgA
and IgE (mouse and human).
[0030] Vaccine: A vaccine is typically understood to be a prophylactic or therapeutic material providing
at least one antigen or antigenic function. The antigen or antigenic function may
stimulate the body's adaptive immune system to provide an adaptive immune response.
[0031] Antibacterial agent: An antibacterial agent is typically a substance that may be effective against bacteria.
The antibacterial agent may for example directly kill bacteria, reduce bacterial growth,
and/or inhibit bacterial propagation and spreading. Examples for antibacterial agents
are given further below.
[0032] Antiviral agent: An antiviral agent is typically a substance that may be effective against viruses.
The antiviral agent may for example directly inactivate viruses, reduce viral replication,
and/or inhibit viral propagation and spreading. Examples for antibacterial agents
are given further below.
[0033] Antigenic function: An antigenic function may for example be an immunogen. Antigenic functions in the
context of the present invention, however, also encompass mediators, i.e. nucleic
acids which do show an antigenic function
in vivo if they code for antigenic proteins/peptides. Such carriers having antigenic function
as understood in the context of the inventions may be expressed by the nucleic acid
in vivo which in turn leads to the presence of proteins or peptides that may act as an immunogen.
Accordingly, in the context of the invention, an antigenic function is typically a
component that can lead directly (direct antigenic functionality / directly acting
antigenic function) or indirectly (indirect antigenic functionality / indirectly acting
antigenic function) to the presence of an antigen within an organism when introduced
into this organism. In this context, direct antigenic functionality typically means
that the antigenic function is, e.g., a protein or peptide (or a killed bacterium,
virus or the like) that is administered to an organism and induces an adaptive immune
response, mostly without being modified by e.g. translation or the like. However,
indirect antigenic functionality typically means in this context that the "antigenic
function" is, e.g., a nucleic acid sequence that is taken up by the target organism
and translated within the organism into a peptide or protein. This peptide or protein
then functions as an immunogen and induces an adaptive immune response. Thus, in one
variant, an "antigenic function" is understood to be a preform or precursor of an
immunogen. Also, an "antigenic function" can be understood to be an immunogen itself.
In the context of the present invention, an antigenic function may in particular be
a Fusion (F) protein of the virus family
Paramyxoviridae and (e.g. artificial) functional variants or fragments thereof as well as (preferably
immunogenic) fragments of said Fusion (F) protein and respective variants; as well
as corresponding nucleic acids encoding any of these, i.e. Fusion (F) proteins of
the virus family
Paramyxoviridae, variants thereof as well as fragments of said Fusion (F) protein and respective variants.
In the context of the present invention, an antigenic function may also in particular
be a Hemagglutinin (HA) protein of the virus family
Orthomyxoviridae and (e.g. artificial) variants thereof as well as (preferably immunogenic) fragments
of said Hemagglutinin (HA) protein and respective variants; as well as corresponding
nucleic acids encoding any of these, i.e. Hemagglutinin (HA) proteins of the virus
family
Orthomyxoviridae, variants thereof as well as fragments of said Hemagglutinin (HA) protein and respective
variants. Fusion (F) proteins of the virus family
Paramyxoviridae and their amino acid sequence and (e.g. artificial) variants thereof may for example
be identified in established databases such as the UniProt database or the Protein
database provided by the National Center for Biotechnology (NCBI, US). Hemagglutinin
(HA) proteins of the virus family
Orthomyxoviridae and (e.g. artificial) variants thereof may for instance likewise be identified in
databases such as the UniProt database or the Protein database provided by the National
Center for Biotechnology (NCBI, US). Antigenic function preferably represents the
immune response elicited by a protein or peptide sequence. The antigenic function
or the antigenic potential of the HA and F protein is typically sequence specific
and depends on specific epitope sequences within the full-length protein. Accordingly,
the antigenis function in terms of the T cell response typically depends on T cell
epitopes, which is typically evoked by peptide (fragments) of a length of between
8 and 11 amino acids (for presentation by MHC class I molecules), whereas B cell epitopes
(for presentation on MHC class II molecules) are typically longer peptides of 13-17
amino acids in length. The antigenic function(s) may preferably be understood as the
immunological potential or immunogenicity (for triggering a T- and B cell response),
which is due to the characteristic T and B cell epitopes of the full-length protein,
e.g. the HA or F protein. The fragments, variants or derivatives of the full-length
protein shall typically retain the same immunological potential as the full-length
HA or F proteins to reflect their antigenic function.
[0034] Antigen-providing RNA: An antigen-providing RNA (in particular an antigen-providing mRNA) in the context
of the invention may typically be a RNA, having at least one open reading frame that
can be translated by a cell or an organism provided with that RNA. The product of
this translation is a peptide or protein that may act as an antigen, preferably as
an immunogen. The product may also be a fusion protein composed of more than one immunogen,
e.g. a fusion protein that consist of two or more epitopes, peptides or proteins derived
from the same or different virus-proteins, wherein the epitopes, peptides or proteins
may be linked by linker sequences.
[0035] Bi-/multicistronic RNA: RNA, preferably an mRNA, that typically may have two (bicistronic) or more (multicistronic)
open reading frames (ORF). An open reading frame in this context is a sequence of
several nucleotide triplets (codons) that can be translated into a peptide or protein.
Translation of such RNA yields two (bicistronic) or more (multicistronic) distinct
translation products (provided the ORFs are not identical). For expression in eukaryotes
such RNA may for example comprise an internal ribosomal entry site (IRES) sequence.
[0036] Fragments or variants of nucleic acids: These fragments or variants may typically comprise a sequence having a sequence
identity with a nucleic acid, or with a protein or peptide, if encoded by the nucleic
acid molecule, of at least 5%, 10%, 20%, 30%, 40%, 50%, 60%, preferably at least 70%,
more preferably at least 80%, equally more preferably at least 85%, even more preferably
at least 90% and most preferably at least 95% or even 97%, 98% or 99%, to the entire
wild type sequence, either on nucleic acid level or on amino acid level.
[0037] Carrier /
polymeric carrier: A carrier in the context of the invention may typically be a compound that facilitates
transport and/or complexation of another compound. Said carrier may form a complex
with said other compound. A polymeric carrier is a carrier that is formed of a polymer.
[0038] Cationic component: The term "cationic component" typically refers to a charged molecule, which is positively
charged (cation) at a pH value of typically about 1 to 9, preferably of a pH value
of or below 9 (e.g. 5 to 9), of or below 8 (e.g. 5 to 8), of or below 7 (e.g. 5 to
7), most preferably at physiological pH values, e.g. about 7.3 to 7.4. Accordingly,
a cationic peptide, protein or polymer according to the present invention is positively
charged under physiological conditions, particularly under physiological salt conditions
of the cell
in vivo. A cationic peptide or protein preferably contains a larger number of cationic amino
acids, e.g. a larger number of Arg, His, Lys or Orn than other amino acid residues
(in particular more cationic amino acids than anionic amino acid residues like Asp
or Glu) or contains blocks predominantly formed by cationic amino acid residues. The
definition "cationic" may also refer to "polycationic" components.
[0039] 5'-Cap-Structure: A
5' cap is typically a modified nucleotide, particularly a guanine nucleotide, added to the
5' end of a RNA-molecule. Preferably, the 5'cap is added using a 5'-5'-triphosphate
linkage.
[0040] Cellular immunity/cellular immune response: Cellular immunity relates typically to the activation of macrophages, natural killer
cells (NK), antigen-specific cytotoxic T-lymphocytes, and the release of various cytokines
in response to an antigen. In a more general way, cellular immunity is not related
to antibodies but to the activation of cells of the immune system. A cellular immune
response is characterized e.g. by activating antigen-specific cytotoxic T-lymphocytes
that are able to induce apoptosis in body cells displaying epitopes of an antigen
on their surface, such as virus-infected cells, cells with intracellular bacteria,
and cancer cells displaying tumor antigens; activating macrophages and natural killer
cells, enabling them to destroy pathogens; and stimulating cells to secrete a variety
of cytokines that influence the function of other cells involved in adaptive immune
responses and innate immune responses.
[0041] Combination vaccine: A combination vaccine is typically a vaccine that may provide two or more immunogens
and/or antigenic functions. The immunogens and/or antigenic functions are provided
simultaneously by one composition.
[0042] Fragments of proteins: "Fragments" of proteins or peptides in the context of the present invention may,
typically, comprise a sequence of a protein or peptide as defined herein, which is,
with regard to its amino acid sequence (or its encoded nucleic acid molecule), N-terminally
and/or C-terminally truncated compared to the amino acid sequence of the original
(native) protein (or its encoded nucleic acid molecule). Such truncation may thus
occur either on the amino acid level or correspondingly on the nucleic acid level.
A sequence identity with respect to such a fragment as defined herein may therefore
preferably refer to the entire protein or peptide as defined herein or to the entire
(coding) nucleic acid molecule of such a protein or peptide. Likewise, "fragments"
of nucleic acids in the context of the present invention may comprise a sequence of
a nucleic acid as defined herein, which is, with regard to its nucleic acid molecule
5'- and/or 3'- truncated compared to the nucleic acid molecule of the original (native)
nucleic acid molecule. A sequence identity with respect to such a fragment as defined
herein may therefore preferably refer to the entire nucleic acid as defined herein.
[0043] Fragments of proteins or peptides in the context of the present invention may furthermore
comprise a sequence of a protein or peptide as defined herein, which has a length
of for example at least 5 amino acids, preferably a length of at least 6 amino acids,
preferably at least 7 amino acids, more preferably at least 8 amino acids, even more
preferably at least 9 amino acids; even more preferably at least 10 amino acids; even
more preferably at least 11 amino acids; even more preferably at least 12 amino acids;
even more preferably at least 13 amino acids; even more preferably at least 14 amino
acids; even more preferably at least 15 amino acids; even more preferably at least
16 amino acids; even more preferably at least 17 amino acids; even more preferably
at least 18 amino acids; even more preferably at least 19 amino acids; even more preferably
at least 20 amino acids; even more preferably at least 25 amino acids; even more preferably
at least 30 amino acids; even more preferably at least 35 amino acids; even more preferably
at least 50 amino acids; or most preferably at least 100 amino acids. For example
such fragment may have a length of about 6 to about 20 or even more amino acids, e.g.
fragments as processed and presented by MHC class I molecules, preferably having a
length of about 8 to about 10 amino acids, e.g. 8, 9, or 10, (or even 6, 7, 11, or
12 amino acids), or fragments as processed and presented by MHC class II molecules,
preferably having a length of about 13 or more amino acids, e.g. 13, 14, 15, 16, 17,
18, 19, 20 or even more amino acids, wherein these fragments may be selected from
any part of the amino acid sequence. These fragments are typically recognized by T-cells
in form of a complex consisting of the peptide fragment and an MHC molecule, i.e.
the fragments are typically not recognized in their native form. Fragments of proteins
or peptides may comprise at least one epitope of those proteins or peptides. Furthermore
also domains of a protein, like the extracellular domain, the intracellular domain
or the transmembrane domain and shortened or truncated versions of a protein may be
understood to comprise a fragment of a protein. The fragment may be chosen as mentioned
from any part of the full length protein or peptide. For example, the fragment of
a Fusion (F) protein of the virus family
Paramyxoviridae, and/or the fragment of the Hemagglutinin (HA) protein of the virus family
Orthomyxoviridae, may be selected, independently of each other, from the first, second, third or fourth
quarter of the amino acid sequence of said Fusion (F) protein of the virus family
Paramyxoviridae and/or the amino acid sequence of said Hemagglutinin (HA) protein of the virus family
Orthomyxoviridae, respectively.
[0044] Epitope (also called "antigen determinant"): T cell epitopes or parts of the proteins in
the context of the present invention may comprise fragments preferably having a length
of about 6 to about 20 or even more amino acids, e.g. fragments as processed and presented
by MHC class I molecules, preferably having a length of about 8 to about 10 amino
acids, e.g. 8, 9, or 10, (or even 11, or 12 amino acids), or fragments as processed
and presented by MHC class II molecules, preferably having a length of about 13 or
more amino acids, e.g. 13, 14, 15, 16, 17, 18, 19, 20 or even more amino acids, wherein
these fragments may be selected from any part of the amino acid sequence. These fragments
are typically recognized by T cells in form of a complex consisting of the peptide
fragment and an MHC molecule.
[0045] B cell epitopes are typically fragments located on the outer surface of (native)
protein or peptide antigens as defined herein, preferably having 5 to 15 amino acids,
more preferably having 5 to 12 amino acids, even more preferably having 6 to 9 amino
acids, which may be recognized by antibodies, i.e. in their native form.
[0046] Such epitopes of proteins or peptides may furthermore be selected from any of the
herein mentioned variants of such proteins or peptides. In this context antigenic
determinants can be conformational or discontinuous epitopes which are composed of
segments of the proteins or peptides as defined herein that are discontinuous in the
amino acid sequence of the proteins or peptides as defined herein but are brought
together in the three-dimensional structure or continuous or linear epitopes which
are composed of a single polypeptide chain.
[0047] Variants of proteins: "Variants" of proteins or peptides as defined in the context of the present invention
may be generated, having an amino acid sequence which differs from the original sequence
in one or more mutation(s), such as one or more substituted, inserted and/or deleted
amino acid(s). Preferably, these fragments and/or variants have the same biological
function or specific activity compared to the full-length native protein, e.g. its
specific antigenic property. "Variants" of proteins or peptides as defined in the
context of the present invention may comprise conservative amino acid substitution(s)
compared to their native, i.e. non-mutated physiological, sequence. Those amino acid
sequences as well as their encoding nucleotide sequences in particular fall under
the term variants as defined herein. Substitutions in which amino acids, which originate
from the same class, are exchanged for one another are called conservative substitutions.
In particular, these are amino acids having aliphatic side chains, positively or negatively
charged side chains, aromatic groups in the side chains or amino acids, the side chains
of which can enter into hydrogen bridges, e.g. side chains which have a hydroxyl function.
This means that e.g. an amino acid having a polar side chain is replaced by another
amino acid having a likewise polar side chain, or, for example, an amino acid characterized
by a hydrophobic side chain is substituted by another amino acid having a likewise
hydrophobic side chain (e.g. serine (threonine) by threonine (serine) or leucine (isoleucine)
by isoleucine (leucine)). Insertions and substitutions are possible, in particular,
at those sequence positions which cause no modification to the three-dimensional structure
or do not affect the binding region. Modifications to a three-dimensional structure
by insertion(s) or deletion(s) can easily be determined e.g. using CD spectra (circular
dichroism spectra) (
Urry, 1985, Absorption, Circular Dichroism and ORD of Polypeptides, in: Modern Physical
Methods in Biochemistry, Neuberger et al. (ed.), Elsevier, Amsterdam).
[0048] Furthermore, variants of proteins or peptides as defined herein, which may be encoded
by a nucleic acid molecule, may also comprise those sequences, wherein nucleotides
of the nucleic acid are exchanged according to the degeneration of the genetic code,
without leading to an alteration of the respective amino acid sequence of the protein
or peptide, i.e. the amino acid sequence or at least part thereof may not differ from
the original sequence in one or more mutation(s) within the above meaning.
[0049] In order to determine the percentage to which two sequences are identical, e.g. nucleic
acid sequences or amino acid sequences as defined herein, preferably the amino acid
sequences encoded by a nucleic acid sequence of the polymeric carrier as defined herein
or the amino acid sequences themselves, the sequences can be aligned in order to be
subsequently compared to one another. Therefore, e.g. a position of a first sequence
may be compared with the corresponding position of the second sequence. If a position
in the first sequence is occupied by the same component (residue) as is the case at
a position in the second sequence, the two sequences are identical at this position.
If this is not the case, the sequences differ at this position. If insertions occur
in the second sequence in comparison to the first sequence, gaps can be inserted into
the first sequence to allow a further alignment. If deletions occur in the second
sequence in comparison to the first sequence, gaps can be inserted into the second
sequence to allow a further alignment. The percentage to which two sequences are identical
is then a function of the number of identical positions divided by the total number
of positions including those positions which are only occupied in one sequence. The
percentage to which two sequences are identical can be determined using a mathematical
algorithm. A preferred, but not limiting, example of a mathematical algorithm which
can be used is the algorithm of
Karlin et al. (1993), PNAS USA, 90:5873-5877 or
Altschul et al. (1997), Nucleic Acids Res., 25:3389-3402. Such an algorithm is integrated in the BLAST program. Sequences which are identical
to the sequences of the present invention to a certain extent can be identified by
this program. A "variant" of a protein or peptide may have at least 70%, 75%, 80%,
85%, 90%, 95%, 98% or 99% amino acid identity over a stretch of 10, 20, 30, 50, 75
or 100 amino acids of such protein or peptide. Analogously, a "variant" of a nucleic
acid sequence may have at least 70%, 75%, 80%, 85%, 90%, 95%, 98% or 99% nucleotide
identity over a stretch of 10, 20, 30, 50, 75 or 100 nucleotide of such nucleic acid
sequence
[0050] Derivative of a protein or peptide: A derivative of a peptide or protein is typically understood to be a molecule that
is derived from another molecule, such as said peptide or protein. A "derivative"
of a peptide or protein also encompasses fusions comprising a peptide or protein used
in the present invention. For example, the fusion comprises a label, such as, for
example, an epitope, e.g., a FLAG epitope or a V5 epitope. For example, the epitope
is a FLAG epitope. Such a tag is useful for, for example, purifying the fusion protein.
[0051] Fusion protein: A fusion protein is typically an artificial peptide or protein. Fusion proteins are
typically created through the joining of two or more open reading frames which originally
coded for separate peptides or proteins wherein joining may optionally occur via a
linker sequence. These joined open reading frames are typically translated in a single
peptide, polypeptide or protein with functional properties derived from each of the
original proteins or peptides. A person skilled in the art will be readily aware,
that the definition of the term "Fusion protein" does not relate to the terms "Fusion
(F) protein" or F protein, which instead refer to a specific class of viral proteins
(see above).
[0052] Humoral immunity/humoral immune response: Humoral immunity refers typically to antibody production and the accessory processes
that may accompany it. A humoral immune response may be typically characterized, e.g.,
by Th2 activation and cytokine production, germinal center formation and isotype switching,
affinity maturation and memory cell generation. Humoral immunity also typically may
refer to the effector functions of antibodies, which include pathogen and toxin neutralization,
classical complement activation, and opsonin promotion of phagocytosis and pathogen
elimination.
[0053] Immunogen: An immunogen is preferably a protein or peptide, e.g. the product of an in vivo translation
of a provided antigenic function. Typically, an immunogen may elicit at least or exclusively
an adaptive immunogen/antigen-specific immune response. In the context of the present
invention, an immunogen may in particular be a (F) protein of the virus family Paramyxoviridae
and (e.g. artificial) variants thereof as well as immunogenic fragments of said Fusion
(F) protein and respective variants. In the context of the present invention, an immunogen
may also in particular be a Hemagglutinin (HA) protein of the virus family Orthomyxoviridae
and (e.g. artificial) variants thereof as well as immunogenic fragments of said Hemagglutinin
(HA) protein and respective variants.
[0054] Immune response: An immune response may typically either be a specific reaction of the adaptive immune
system to a particular antigen (so called specific or adaptive immune response) or
an unspecific reaction of the innate immune system (so called unspecific or innate
immune response). The invention relates to the core to specific reactions (adaptive
immune responses) of the adaptive immune system. Particularly, it relates to adaptive
immune responses to infections by viruses like e.g. RSV or influenza. However, this
specific response can be supported by an additional unspecific reaction (innate immune
response). Therefore, the invention also relates to a compound for simultaneous stimulation
of the innate and the adaptive immune system to evoke an efficient adaptive immune
response.
[0055] Immune system: The immune system may protect organisms from infection. If a pathogen breaks through
a physical barrier of an organism and enters this organism, the innate immune system
provides an immediate, but non-specific response. If pathogens evade this innate response,
vertebrates possess a second layer of protection, the adaptive immune system. Here,
the immune system adapts its response during an infection to improve its recognition
of the pathogen. This improved response is then retained after the pathogen has been
eliminated, in the form of an immunological memory, and allows the adaptive immune
system to mount faster and stronger attacks each time this pathogen is encountered.
According to this, the immune system comprises the innate and the adaptive immune
system. Each of these two parts contains so called humoral and cellular components.
[0056] Immunostimulatory RNA: An immunostimulatory RNA (isRNA) in the context of the invention may typically be
a RNA that is able to induce an innate immune response itself. It usually does not
have an open reading frame and thus does not provide a peptide-antigen or immunogen
but elicits an innate immune response e.g. by binding to a specific kind of Toll-like-receptor
(TLR) or other suitable receptors. However, of course also mRNAs having an open reading
frame and coding for a peptide/protein (e.g. an antigenic function) may induce an
innate immune response.
[0057] Innate immune system: The innate immune system, also known as non-specific immune system, comprises the
cells and mechanisms that defend the host from infection by other organisms in a non-specific
manner. This means that the cells of the innate system recognize and respond to pathogens
in a generic way, but unlike the adaptive immune system, it does not confer long-lasting
or protective immunity to the host. The innate immune system may be e.g. activated
by ligands of pathogen-associated molecular patterns (PAMP) receptors, e.g. Toll-like
receptors (TLRs) or other auxiliary substances such as lipopolysaccharides, TNF-alpha,
CD40 ligand, or cytokines, monokines, lymphokines, interleukins or chemokines, IL-1,
IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12, IL-13, IL-14, IL-15,
IL-16, IL-17, IL-18, IL-19, IL-20, IL-21, IL-22, IL-23, IL-24, IL-25, IL-26, IL-27,
IL-28, IL-29, IL-30, IL-31, IL-32, IL-33, IFN-alpha, IFN-beta, IFN-gamma, GM-CSF,
G-CSF, M-CSF, LT-beta, TNF-alpha, growth factors, and hGH, a ligand of human Toll-like
receptor TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10, a ligand of
murine Toll-like receptor TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10,
TLR11, TLR12 or TLR13, a ligand of a NOD-like receptor, a ligand of a RIG-I like receptor,
an immunostimulatory nucleic acid, an immunostimulatory RNA (isRNA), a CpG-DNA, an
antibacterial agent, or an anti-viral agent. Typically a response of the innate immune
system includes recruiting immune cells to sites of infection, through the production
of chemical factors, including specialized chemical mediators, called cytokines; activation
of the complement cascade; identification and removal of foreign substances present
in organs, tissues, the blood and lymph, by specialized white blood cells; activation
of the adaptive immune system through a process known as antigen presentation; and/or
acting as a physical and chemical barrier to infectious agents.
[0058] Monocistronic RNA: A monocistronic RNA may typically be a RNA, preferably a mRNA, that encodes only
one open reading frame. An open reading frame in this context is a sequence of several
nucleotide triplets (codons) that can be translated into a peptide or protein.
[0059] Nucleic acid: The term nucleic acid means any DNA- or RNA-molecule and is used synonymous with
polynucleotide. Wherever herein reference is made to a nucleic acid or nucleic acid
sequence encoding a particular protein and/or peptide, said nucleic acid or nucleic
acid sequence, respectively, preferably also comprises regulatory sequences allowing
in a suitable host, e.g. a human being, its expression, i.e. transcription and/or
translation of the nucleic acid sequence encoding the particular protein or peptide.
[0060] Peptide: A peptide is a polymer of amino acid monomers. Usually the monomers are linked by
peptide bonds. The term "peptide" does not limit the length of the polymer chain of
amino acids. In some embodiments of the present invention a peptide may for example
contain less than 50 monomer units. Longer peptides are also called polypeptides,
typically having 50 to 600 monomeric units, more specifically 50 to 300 monomeric
units.
Pharmaceutically effective amount: A pharmaceutically effective amount in the context of the invention is typically
understood to be an amount that is sufficient to induce an immune response.
[0061] Protein: A protein typically consists of one or more peptides and/or polypeptides folded into
3-dimensional form, facilitating a biological function.
[0062] Poly (C) sequence: A poly-(C )-sequence is typically a long sequence of cytosine nucleotides, typically
about 10 to about 200 cytosine nucleotides, preferably about 10 to about 100 cytosine
nucleotides, more preferably about 10 to about 70 cytosine nucleotides or even more
preferably about 20 to about 50 or even about 20 to about 30 cytosine nucleotides.
A poly(C) sequence may preferably be located 3' of the coding region comprised by
a nucleic acid.
[0063] Poly-A-tail: A poly-A-tail also called "3'-poly(A) tail" is typically a long sequence of adenosine
nucleotides of up to about 400 adenosine nucleotides, e.g. from about 25 to about
400, preferably from about 50 to about 400, more preferably from about 50 to about
300, even more preferably from about 50 to about 250, most preferably from about 60
to about 250 adenosine nucleotides, added to the 3' end of a RNA.
[0064] Polyadenylation signal: Polyadenylation is typically the addition of a Poly-A-Tail to a RNA, particularly
to an mRNA. It is induced by a so called polyadenylation signal. This signal may be
typically located at the 3'-end of a RNA to be polyadenylated and may typically comprise
a hexamer consisting of adenine and uracil, preferably the hexamer AAUAAA. Other hexamer
sequences are conceivable.
[0065] Stabilized nucleic acid: A stabilized nucleic acid, typically, exhibits a modification increasing resistance
to
in vivo degradation (e.g. degradation by an exo- or endo-nuclease) and/or ex vivo degradation
(e.g. by the manufacturing process prior to vaccine administration, e.g. in the course
of the preparation of the vaccine solution to be administered). Stabilization of RNA
can, e.g., be achieved by providing a 5'Cap-Structure, a Poly-A-Tail, or any other
UTR-modification. It can also be achieved by backbone-modification or modification
of the G/C-content of the nucleic acid. Various other methods are known in the art
and conceivable in the context of the invention.
[0066] Vaccine: A vaccine is typically understood to be a prophylactic or therapeutic material providing
at least one antigenic function, particularly an immunogen. The antigen or immunogen
stimulates the body's adaptive immune system to provide an adaptive immune response.
[0067] Vehicle: An agent, e.g. a carrier, that may typically be used within a vaccine for facilitating
administering of the immunogenic composition and/or the antigenic function to an individual.
[0068] In a first aspect, the invention provides a combination vaccine providing at least
a first and a second antigenic function; the combination vaccine comprising at least
one RNA (preferably mRNA) encoding at least one or more proteins or fragments, variants
or derivatives of proteins awarding the antigenic functions; wherein the first antigenic
function being a Fusion (F) protein or a fragment, variant or derivative of a Fusion
(F) protein derived from the virus family
Paramyxoviridae and the second antigenic function being an Hemagglutinin (HA) protein or a fragment,
variant or derivative of an Hemagglutinin (HA) protein derived from the virus family
Orthomyxoviridae.
[0069] It can easily be recognised that each RNA encoding an antigenic function is an antigen-providing
RNA according to the above given definition. The immuno-active component (that means
the component that causes an interaction with the immune system of the treated individual
to provoke preferably an adaptive immune response) is at least one antigen-providing
RNA. As an example the combination vaccine can contain either one antigen-providing
RNA that encodes both or all antigenic functions or two or more distinct antigen-providing
RNAs encoding both or all antigenic functions.
[0070] According to the invention the RNA in the combination vaccine may for example be
an mRNA. However, other forms of RNA may likewise find its application in carrying
out the teaching of the present invention by providing mRNA. For example, the RNA
may be a virus derived RNA vector such as a retrovirus or an alphavirus derived RNA
replicon vector. A retrovirus is an RNA virus that is duplicated in a host cell using
the reverse transcriptase enzyme to produce DNA from its RNA genome. The DNA is then
incorporated into the host's genome by an integrase enzyme. The virus thereafter replicates
as part of the host cell's DNA and then undergoes the usual transcription and translational
processes to express the genes carried by the virus. Alphaviruses are single stranded
RNA viruses in which heterologous genes of interest may substitute for the alphavirus'
structural genes. By providing the structural genes
in trans, the replicon RNA is packaged into replicon particles (RP) which may be used for example
for vaccination (see for example
Vander Veen et al., 2012. Alphavirus replicon vaccines. Animal Health Research Reviews,
p. 1-9). After entry into the host cell, the genomic viral RNA initially serves as an mRNA
for translation of the viral nonstructural proteins (nsPs) required for initiation
of viral RNA amplification. RNA replication occurs via synthesis of a full-length
minusstrand intermediate that is used as the template for synthesis of additional
genome-length RNAs and for transcription of a plus-strand subgenomic RNA from an internal
promoter. Such RNA may then be considered as self replicating RNA, since the non-structural
proteins responsible for replication (and transcription of the heterologous genes)
are still present in such replicon. The Fusion (F) protein and the Hemagglutinin (HA)
protein as encoded by said RNA (e.g. mRNA or viral RNA) are defined as either being
full-length proteins or being fragments, variants or derivatives of the proteins,
wherein fragments, variants and derivatives of the proteins are understood as defined
above. The encoded proteins or fragments, variants or derivatives of the proteins
may be antigens, particularly immunogens. It is also possible that the coding sequence
of the Fusion (F) protein and/or the Hemagglutinin (HA) protein is distributed over
two or more RNAs and/or over two or more open reading frames. The two or more RNAs
and/or two or more open reading frames will in such scenario encode several distinct
fragments of the Fusion (F) protein and/or the Hemagglutinin (HA) protein.
[0071] According to the present invention, the inventive combination vaccine comprising
at least one RNA providing these antigenic functions (HA protein and F protein, or
fragments, variants or derivatives thereof) does show an unexpectedly remarkable synergistic
effect. Particularly, it was unexpectedly found by the inventors that such a combination
vaccine comprising RNAs encoding a Fusion (F) protein of the virus family
Paramyxoviridae, particularly RSV and a Hemagglutinin (HA) protein of the virus family
Orthomyxoviridae, particularly Influenza, or fragments, variants or derivatives thereof, provides an
improved Fusion (F) protein-specific immune response, particularly a superior specific
T cell response compared to vaccination with mRNA coding solely for the Fusion (F)
protein. The combination vaccine according to the invention is thus preferably suitable
to elicit an antigen-specific immune response in a patient. Herein, the mRNA encoded
Fusion (F) protein and Hemagglutinin (HA) protein, respectively their fragments, variants
or derivatives, serve as antigens. In this context, it may be preferred that the RNA
encoding the Fusion (F) protein or a fragment, variant or derivative thereof of the
virus family
Paramyxoviridae, and the RNA encoding the Hemagglutinin (HA) protein or a fragment, variant or derivative
thereof of the virus family
Orthomyxoviridae are comprised in the same composition of the combination vaccine. One single composition
enables the locally and timely simultaneous application of different antigens, which
may be considered to be particularly advantageous in this specific application, because
it improves the T cell response directed against the F protein. Furthermore, it reduces
the number of injections required to prevent the diseases and minimizes the costs
of stocking separate vaccines.
[0072] Quasi-simultaneous administration may, alternatively, be also achieved by subsequent
administration (within e.g. up to 10 minutes, more preferably within two minutes)
of a combination vaccine which is composed of e.g. two separate compositions, wherein
the first composition contains RNA encoding the Fusion (F) protein or a fragment,
variant or derivative thereof of the virus family
Paramyxoviridae, and the second composition contains the RNA encoding the Hemagglutinin (HA) protein
or a fragment, variant or derivative thereof of the virus family
Orthomyxoviridae. In case of subsequent administration, it is preferred to administer both compositions
at the same site of the body or at least close to each other such that the same area
of the patient's lymphatic system is addressed by both administrations, thereby triggering
an immune response which as coherent as an immune response triggered by the administration
of a combination vaccine composed one single composition containing mRNA molecules
encoding both antigenic functions. Accordingly, a "staggered" combination vaccine
may, alternatively, be provided by subsequent administration by separate compositions,
each composition comprising distinct immunogens and/or antigenic functions. By subsequent
administration however, a immune response is to be triggered which is comparable to
the coherent immune response achieved by the administration of one single composition,
i.e. the synergistic effect on e.g. the immune response against the F protein.
[0073] Besides, this approach according to the invention shows the potential of an RNA based
vaccine allowing simultaneous vaccination against viruses belonging to the virus families
Paramyxoviridae and
Orthomyxoviridae, respectively, by combination of RNA vaccines encoding relevant viral antigens. The
combination of RNAs encoding the Fusion (F) protein or a fragment, variant or derivative
thereof of e.g. RSV strains and the Hemagglutinin (HA) protein or a fragment, variant
or derivative thereof of e.g. Influenza viruses was shown to specifically enhance
the adaptive immune response against the e.g. RSV F protein in an unexpected way.
Thus, the combination vaccine according to the invention provides not only a mixture
of RNAs encoding different antigens (of two distinct viruses) but also an unexpected
synergistic effect for the F protein specific T cell immune response.
[0074] Any functional fragment, variant or derivative of the Fusion (F) protein or the Hemagglutinin
(HA) protein, which may be encoded by the RNAs of the inventive combination vaccine
shall advantageously trigger the same synergistic immune response as the corresponding
full-length proteins, in particular the same specific T cell immune response and preferably
also the same B-cell response, as observed for the full-length protein-based combination
vaccine, against the F protein of e.g. RSV. The "same" in this regard means of "the
same order of magnitude". The T cell or B cell immune responses against the F protein
(or its functional fragments, derivatives or variants) may be measured as shown in
Examples 4 and 5 (Figures 1 to 3) herein. Typically, any functional fragment, variant
or derivative of the full-length F or HA proteins contains the decisive epitopes of
the full-length HA or F protein sequences such that the immune response is not decreased
due to less antigenic potential of the fragments, variant or derivative.
[0075] In a specific embodiment of the first aspect of the invention, the antigenic functions
are provided by the combination vaccine in the form of monocistronic RNAs, whereby
a first monocistronic RNA encodes said Fusion (F) protein or said fragment, variant
or derivative thereof and a second monocistronic RNA encodes said Hemagglutinin (HA)
protein or said fragment, variant or derivative thereof.
[0076] In another embodiment, the antigenic functions are provided by the combination vaccine
in the form of a bicistronic or a multicistronic RNA. For example, the bi- or multicistronic
RNA may contain at least one open reading frame, which encodes said Fusion (F) protein
or said fragment, variant or derivative thereof and wherein at least one other open
reading frame encodes said Hemagglutinin (HA) protein or said fragment, variant or
derivative thereof. Hereby, both antigenic functions are provided by one single RNA
molecule. More generally, however, such a bi- or multicistronic RNA may encode, e.g.,
two or even more coding sequences of at least two antigenic functions, as defined
above. Accordingly, a bi- or multicistronic RNA may e.g. contain distinct antigenic
functions of the Fusion (F) protein only (e.g. derived from the same or from different
RSV strains), whereas another bi- or multicistronic RNA may, e.g., contain distinct
antigenic functions of the Hemagglutinin (HA) protein (derived e.g. from the same
or from different Influenza strains).
[0077] Accordingly, it is encompassed by the invention that the combination vaccine comprises
a first bi- or multicistronic RNA encoding for an ensemble of Fusion (F) proteins
or fragments, variants or derivatives thereof derived from different
Paramyxoviridae and a second monocistronic RNA encoding for a Hemagglutinin (HA) protein derived
from a virus belonging to the
Orthomyxoviridae, or the other way around.
[0078] The coding sequences of such bi- or multicistronic RNAs, e.g. the ORFs of the at
least two antigenic functions, may be separated by at least one internal ribosomal
entry site (IRES) sequence. This so-called IRES sequence can function as a sole ribosome
binding site, but it can also serve to provide a bi- or even multicistronic RNA as
defined herein which codes for several antigens, which are to be translated by the
ribosomes independently of one another. Examples of IRES sequences which can be used
according to the invention are those from picornaviruses (e.g. FMDV), pestiviruses
(CFFV), polioviruses (PV), encephalomyocarditis viruses (ECMV), foot and mouth disease
viruses (FMDV), hepatitis C viruses (HCV), classical swine fever viruses (CSFV), mouse
leukemia virus (MLV), simian immunodeficiency viruses (SIV) or cricket paralysis viruses
(CrPV).
[0079] In another embodiment according to the first aspect of the invention, the antigenic
functions are provided by the combination vaccine in the form of a monocistronic RNA
encoding the Fusion (F) protein or a fragment, variant or derivative thereof and encoding
the Hemagglutinin (HA) protein or a fragment, variant or derivative thereof as a fusion
protein. By such a fusion protein, e.g. the full-length sequences of the Fusion (F)
protein and the full-length sequence of the Hemagglutinin (HA) protein are linked
with or without a linker sequence. Alternatively, such a fusion protein may contain
a full-length protein sequence of the Fusion (F) protein and only parts of the Hemagglutinin
(HA) protein (or vice versa) or may contain parts of either both of these proteins.
Preferred are RNAs encoding fusion proteins which are composed of one or more antigenic
peptide sequences, encoding epitopes of the Fusion (F) and/or the Hemagglutinin (HA)
protein that can individually act as immunogens. These epitopes of each of these proteins
are preferably arranged in a non-native way, which means that the epitope sequences
are isolated from the native sequences and are linked by non-native linker sequences
(e.g linker sequences having more than 50% glycine and proline residues). Generally,
however, inventive monocistronic RNAs encoding such fusion proteins may be provided
with or without linker sequences. Such linker sequences typically comprise 5 to 25
amino acids, preferably selected from proline and glycine. Preferably, the linker
sequence is immunologically neutral. e.g. non-immunogenic and non-immunostimulatory.
[0080] It is preferred that the at least one Fusion (F) protein is derived from viruses
selected from: Avulavirus, Ferlavirus, Henipavirus, Morbillivirus, Respirovirus, Rubulavirus,
TPMV-like viruses, Pneumovirus, Metapneumovirus, Atlantic salmon paramyxovirus, Beilong
virus, J virus, Mossman virus, Nariva virus, Salem virus, or Pacific salmon paramyxovirus.
Avulavirus can be e.g. Newcastle disease virus; Ferlavirus can be e.g. Fer-de-Lance
virus; Henipavirus can be e.g. Hendravirus, Nipahvirus; Morbillivirus can be e.g.
Measles virus, Rinderpest virus, Canine distemper virus, Phocine distemper virus,
Peste des Petits Ruminants virus (PPR); Respirovirus can be e.g. Sendai virus, Human
Parainfluenza viruses 1 and 3, viruses of the common cold; Rubulavirus can be e.g.
Mumps virus, Human Parainfluenza viruses 2 and 4, Simian Parainfluenza virus 5, Menangle
virus, Tioman virus, Tuhokovirus 1, 2 and 3; TPMV-like viruses can be e.g. Tupaia
paramyxovirus; Pneumovirus can be e.g. Human respiratory syncytial virus, Bovine respiratory
syncytial virus; and Metapneumovirus which can be e.g. Avian pneumovirus, Human metapneumovirus.
Particularly, it is preferred that the Fusion (F) protein is derived from human respiratory
syncytial virus (RSV), preferably selected from RSV Long (preferably according to
SEQ ID No. 1) or RSV A2 (preferably according to SEQ ID No. 2 or mutants thereof such
as P102A, I379V or M447V), more preferably the Fusion (F) protein is a protein encoded
at least partially by one of the nucleic acid sequences according to SEQ ID No. 4,
SEQ ID No. 5, SEQ ID No. 7, SEQ ID No. 8, SEQ ID No. 9, SEQ ID No. 10, SEQ ID No.
11, SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15, SEQ ID No. 16, SEQ ID No. 17, SEQ
ID No. 19, or SEQ ID No. 20.
[0081] The combination vaccine of the invention can contain an ensemble of more than one
antigenic function derived from distinct Fusion (F) proteins, which may either be
derived from distinct strains of e.g. the above viruses or derived from (e.g. the
above) different viruses or may be a combination of both. They may be provided distinct
RNA molecules (more than one type) or by a single RNA molecule (one type). If provided
by one single RNA type, the distinct antigenic functions may be provided by a monocistronic
type of RNA encoding a fusion protein presenting these distinct antigenic functions
or by a bi- or multicistronic RNA coding for distinct antigenic functions. Of course,
the above embodiments may be combined and do not exclude each other.
[0082] It is further preferred that the at least one Hemagglutinin (HA) protein is derived
from an Influenza virus, preferably selected from: Influenza A (e.g. H1N1, H1N2, H2N2,
H3N1, H3N2, H3N8, H5N1, H5N2, H5N3, H5N8, H5N9, H7N1, H7N2, H7N3, H7N4, H7N7, H9N1,
H9N2, H10N7), Influenza B, Influenza C, Isavirus (e.g. Infectious salmon anemia virus),
Thogotovirus (e.g. Dhori virus), Quaranfil virus, Johnston Atoll virus, or Lake Chad
virus, more preferably the HA protein is a protein according to SEQ ID No. 3, more
preferably the Hemagglutinin (HA) protein is a protein encoded at least partially
by the nucleic acid sequence according to SEQ ID No. 6, SEQ ID No: 12, SEQ ID No:
18, or SEQ ID No. 21. More preferably, the HA protein as encoded by any of the above
SEQ ID Nos. may be combined, e.g. for providing one single composition comprising
at least two nucleic acids, e.g. SEQ ID No. 18 or SEQ ID No. 21, with a F protein
encoded by any of the following SEQ ID Nos. 13, 14, 15, 16, 17. 19 and 20. Accordingly,
e.g. SEQ ID No. 18 or SEQ ID No. 21 may be combined for the combination vaccine, e.g.
in the form of one single composition or as a staggered combination vaccine, with
SEQ ID No. 13, alternatively, with SEQ ID No. 14. or alternatively with SEQ ID No.
15, or alternatively with SEQ ID No: 16, or alternatively SEQ ID No. 17 or alternatively
SEQ ID No 19 or alternatively SEQ ID No 20.
[0083] The combination vaccine of the invention can contain an ensemble of more than one
antigenic function derived from distinct Hemagglutinin (HA) proteins, which may either
be derived from distinct strains of e.g. the above viruses or derived from (e.g. the
above) different viruses or may be a combination of both. They may be provided by
more distinct RNA molecules (more than one type) or by a single RNA molecule (one
type). If provided by one single RNA type, the distinct antigenic functions may be
provided by a monocistronic type of RNA encoding a fusion protein presenting these
distinct antigenic functions or a bi- or multicistronic RNA coding for distinct antigenic
functions. Of course, the above embodiments may be combined and do not exclude each
other. The at least one RNA of the inventive combination vaccine (or any further nucleic
acid as defined herein) may be stabilized in order to prevent instability and (fast)
degradation of the RNA (or any further nucleic acid molecule) by various approaches.
This instability of RNA is typically due to RNA-degrading enzymes, "RNases" (ribonucleases),
wherein contamination with such ribonucleases may sometimes completely degrade RNA
in solution. Accordingly, the natural degradation of RNA in the cytoplasm of cells
is very finely regulated and RNase contaminations may be generally removed by special
treatment prior to use of said compositions, in particular with diethyl pyrocarbonate
(DEPC). A number of mechanisms of natural degradation are known in this connection
in the prior art, which may be utilized as well. E.g., the terminal structure is typically
of critical importance particularly for an mRNA. As an example, at the 5' end of naturally
occurring mRNAs there is usually a so-called cap structure, which is a modified guanosine
nucleotide also called 5
'Cap structure, and at the 3' end is typically a sequence of up to 200 adenosine nucleotides
(the so-called poly-A tail). By a further embodiment the at least one RNA comprises
at least one of the following structural elements: a histone-stem-loop structure,
preferably a histone-stem-loop in its 3' untranslated region, a
5'Cap structure, a poly(C) sequence, a poly-A tail and/or a polyadenylation signal, preferably
as defined herein.
[0084] By a further embodiment, the at least one RNA preferably comprises at least two of
the following structural elements: a 5' and/or 3'-stabilizing sequence; a histone-stem-loop
structure, preferably a histone-stem-loop in its 3' untranslated region; a 5'-Cap
structure; a poly(C) sequence; a poly-A tail; or a polyadenylation signal, e.g. given
a 5'-Cap structure and a histone-stem-loop and, potentially a poly-A-tail.
[0085] Stabilizing sequences in the 5' and/or 3' untranslated regions have the effect of
increasing the half-life of the nucleic acid in the cytosol. These stabilizing sequences
can have 100% sequence identity to naturally occurring sequences which occur in viruses,
bacteria and eukaryotes, but can also be partly or completely synthetic. The untranslated
sequences (UTR) of the (alpha-)globin gene, e.g. from
Homo sapiens or
Xenopus laevis may be mentioned as an example of stabilizing sequences which can be used in the
present invention for a stabilized nucleic acid.
[0086] Another example of a stabilizing sequence has the general formula (C/U)CCAN
xCCC(U/A)Py
xUC(C/U)CC) which is contained in the 3' UTR of the very stable RNA which codes for
(alpha-)globin, type(I)-collagen, 15-lipoxygenase or for tyrosine hydroxylase (cf.
Holcik et al., Proc. Natl. Acad. Sci. USA 1997, 94: 2410 to 2414). Such stabilizing sequences can of course be used individually or in combination
with one another and also in combination with other stabilizing sequences known to
a person skilled in the art.
[0087] A histone stem-loop sequence, suitable to be used within the present invention, is
preferably selected from at least one of the following formulae (I) or (II):

wherein:
- stem1 or stem2 bordering elements N1-6
- is a consecutive sequence of 1 to 6, preferably of 2 to 6, more preferably of 2 to
5, even more preferably of 3 to 5, most preferably of 4 to 5 or 5 N, wherein each
N is independently from another selected from a nucleotide selected from A, U, T,
G and C, or a nucleotide analogue thereof;
- stem1 [N0-2GN3-5]
- is reverse complementary or partially reverse complementary with element stem2, and
is a consecutive sequence between of 5 to 7 nucleotides;
wherein N0-2 is a consecutive sequence of 0 to 2, preferably of 0 to 1, more preferably of 1 N,
wherein each N is independently from another selected from a nucleotide selected from
A, U, T, G and C or a nucleotide analogue thereof; wherein N3-5 is a consecutive sequence of 3 to 5, preferably of 4 to 5, more preferably of 4 N,
wherein each N is independently from another selected from a nucleotide selected from
A, U, T, G and C or a nucleotide analogue thereof, and
wherein G is guanosine or an analogue thereof, and may be optionally replaced by a
cytidine or an analogue thereof, provided that its complementary nucleotide cytidine
in stem2 is replaced by guanosine;
- loop sequence [N0-4(U/T)N0-4]
- is located between elements stem1 and stem2, and is a consecutive sequence of 3 to
5 nucleotides, more preferably of 4 nucleotides;
wherein each N0-4 is independent from another a consecutive sequence of 0 to 4, preferably of 1 to
3, more preferably of 1 to 2 N, wherein each N is independently from another selected
from a nucleotide selected from A, U, T, G and C or a nucleotide analogue thereof;
and wherein U/T represents uridine, or optionally thymidine;
- stem2 [N3-5CN0-2]
- is reverse complementary or partially reverse complementary with element stem1, and
is a consecutive sequence between of 5 to 7 nucleotides;
wherein N3-5 is a consecutive sequence of 3 to 5, preferably of 4 to 5, more preferably of 4 N,
wherein each N is independently from another selected from a nucleotide selected from
A, U, T, G and C or a nucleotide analogue thereof;
wherein N0-2 is a consecutive sequence of 0 to 2, preferably of 0 to 1, more preferably of 1 N,
wherein each N is independently from another selected from a nucleotide selected from
A, U, T, G or C or a nucleotide analogue thereof; and
wherein C is cytidine or an analogue thereof, and may be optionally replaced by a
guanosine or an analogue thereof provided that its complementary nucleoside guanosine
in stem1 is replaced by cytidine;
wherein
stem1 and stem2 are capable of base pairing with each other forming a reverse complementary
sequence, wherein base pairing may occur between stem! and stem2, e.g. by Watson-Crick
base pairing of nucleotides A and U/T or G and C or by non-Watson-Crick base pairing
e.g. wobble base pairing, reverse Watson-Crick base pairing, Hoogsteen base pairing,
reverse Hoogsteen base pairing or are capable of base pairing with each other forming
a partially reverse complementary sequence, wherein an incomplete base pairing may
occur between stem1 and stem2, on the basis that one ore more bases in one stem do
not have a complementary base in the reverse complementary sequence of the other stem.
[0088] A further optionally comprised stabilizing element is a poly(A) sequence, also called
poly-A-tail at the 3'-terminus of the at least one RNA. When present, such a poly(A)
sequence comprises a sequence of about 25 to about 400 adenosine nucleotides, preferably
a sequence of about 50 to about 400 adenosine nucleotides, more preferably a sequence
of about 50 to about 300 adenosine nucleotides, even more preferably a sequence of
about 50 to about 250 adenosine nucleotides, most preferably a sequence of about 60
to about 250 adenosine nucleotides. In this context the term "about" refers to a deviation
of ± 10% of the value(s) it is attached to.
[0089] According to a further preferred embodiment the at least one RNA of the inventive
combination vaccine or any further nucleic acid comprised in the inventive combination
vaccine as defined herein, can be modified by a sequence of at least 10 cytosines,
preferably at least 20 cytosines, more preferably at least 30 cytosines (so-called
"poly(C) sequence"). Particularly, the nucleic acid molecule may contain or code for
a poly(C) sequence of typically about 10 to 200 cytosine nucleotides, preferably about
10 to 100 cytosine nucleotides, more preferably about 10 to 70 cytosine nucleotides
or even more preferably about 20 to 50 or even 20 to 30 cytosine nucleotides. This
poly(C) sequence is preferably located 3' of the coding region comprised in the nucleic
acid particularly in the at least one RNA according to the first aspect of the present
invention.
[0090] In this context it is particularly preferred that the at least one RNA encoding at
least one Fusion (F) protein or a fragment, variant or derivative thereof of the virus
family
Paramyxoviridae and at least one Hemagglutinin (HA) protein or a fragment, variant or derivative
thereof of the virus family
Orthomyxoviridae (or any other coding nucleic acid comprised in the inventive combination vaccine)
has the following structure in 5' to 3'-direction:
- a) a coding region, preferably encoding a peptide or protein as defined above;
- b) at least one histone stem-loop, optionally without a histone downstream element
3' to the histone stem-loop
- c) a poly(A) sequence or a polyadenylation signal.
[0091] In another particular preferred embodiment the at least one RNA encoding at least
one Fusion (F) protein or a fragment, variant or derivative thereof of the virus family
Paramyxoviridae and at least one Hemagglutinin (HA) protein or a fragment, variant or derivative
thereof of the virus family
Orthomyxoviridae (or any other coding nucleic acid comprised in the inventive combination vaccine)
has the following structure in 5' to 3'-direction:
- a) a coding region, preferably encoding a peptide or protein as defined above;
- b) a poly(A) sequence; and
- c) at least one histone stem-loop.
[0092] The coding region might be or might comprise at least partially the coding region
of one of the sequences according to SEQ ID No. 4 to SEQ ID No. 21. Particularly,
the RNA might be or might comprise at least partially one of the sequences according
to SEQ ID No. 4 to SEQ ID No. 21. Furthermore, the RNA (e.g. mRNA) might comprise
a combination of at least two of these sequences or a combination of fragments or
variants thereof. Thereby, at least one sequence is preferably selected from SEQ ID
No. 19; or SEQ ID No. 20, and a further sequence is preferably selected from SEQ ID
No. 21. Other combinations can of course be imagined as well.
[0093] For further improvement of the resistance to e.g.
in vivo degradation (e.g. by an exo- or endo-nuclease), the at least one RNA of the inventive
combination vaccine or any further nucleic acid comprised in the inventive combination
vaccine may be provided as a stabilized nucleic acid, e.g. in the form of a modified
nucleic acid. According to a further embodiment of the invention it is therefore preferred
that the at least one RNA or any further nucleic acid comprised in the inventive combination
vaccine is stabilized, preferably by backbone modifications, sugar modifications and/or
base modifications, more preferred stabilized by modification of the G/C-content.
All of these modifications may be introduced into the at least one RNA without impairing
the RNA's function to be translated into the antigenic function derived from the Fusion
(F) protein or the Hemagglutinin (HA) protein or any further encoded protein or peptide.
[0094] A backbone modification in the context of the present invention is preferably a modification
in which phosphates of the backbone of the nucleotides contained in the at least one
RNA of the inventive combination vaccine (or any further nucleic acid as defined herein)
are chemically modified, e.g. anionic internucleoside linkage, N3'-7P5' modifications,
replacement of non-bridging oxygen atoms by boranes, neutral internucleoside linkage,
amide linkage of the nucleosides, methylene(methylimino) linkages, formacetal and
thioformacetal linkages, introduction of sulfonyl groups, or the like.
[0095] A sugar modification in the context of the present invention is preferably a chemical
modification of the sugar of the nucleotides of the at least one RNA of the inventive
combination vaccine (or any further nucleic acid as defined herein), e.g. methylation
of the ribose residue or the like.
[0096] According to another embodiment, the at least one RNA of the inventive combination
vaccine or any further coding nucleic acid comprised in the inventive combination
vaccine may be modified and thus stabilized by modifying the G (guanosine)/C (cytosine)
content of the mRNA, preferably of the coding region thereof.
[0097] Therein, the G/C content of the at least one RNA of the inventive combination vaccine
or any further coding nucleic acid comprised in the inventive combination vaccine
is particularly increased compared to the G/C content of the coding region of its
particular wild type coding sequence, i.e. the unmodified RNA. However, the encoded
amino acid sequence of the RNA or coding nucleic acid is preferably not modified compared
to the coded amino acid sequence of the particular wild type RNA or coding nucleic
acid.
[0098] The modification of the G/C-content of the at least one RNA of the inventive combination
vaccine or any further coding nucleic acid comprised in the inventive combination
vaccine is based on the fact that RNA sequences having an increased G (guanosine)/C
(cytosine) content are more stable than RNA sequences having an increased A (adenosine)/U
(uracil) content. The codons of a coding sequence or a whole RNA might therefore be
varied compared to the wild type coding sequence or mRNA, such that they include an
increased amount of G/C nucleotides while the translated amino acid sequence is retained.
In respect to the fact that several codons code for one and the same amino acid (so-called
degeneration of the genetic code), the most favourable codons for the stability can
be determined (so-called alternative codon usage). Preferably, the G/C content of
the coding region of the at least one RNA of the inventive combination vaccine or
any further coding nucleic acid comprised in the inventive combination vaccine according
to the invention is increased by at least 7%, more preferably by at least 15%, particularly
preferably by at least 20%, compared to the G/C content of the coded region of the
wild type RNA. According to a specific embodiment at least 5%, 10%, 20%, 30%, 40%,
50%, 60%, more preferably at least 70 %, even more preferably at least 80% and most
preferably at least 90%, 95% or even 100% of the substitutable codons in the region
coding for a protein or peptide as defined herein or its fragment or variant thereof
or the whole sequence of the wild type RNA sequence or coding sequence are substituted,
thereby increasing the G/C content of said sequence. In this context, it is particularly
preferable to increase the G/C content of the at least one RNA of the inventive combination
vaccine or any further coding nucleic acid comprised in the inventive combination
vaccine to the maximum (i.e. 100% of the substitutable codons), in particular in the
region coding for a protein, compared to the wild type sequence.
[0099] According to a further preferred embodiment of the invention, the at least one RNA
or any further coding nucleic acid comprised in the inventive combination vaccine
is optimized for translation, preferably optimized for translation by replacing codons
for less frequent tRNAs of a given amino acid by codons for more frequently occurring
tRNAs of the respective amino acid. This is based on the finding that the translation
efficiency is also determined by a different frequency in the occurrence of tRNAs
in cells. Thus, if so-called "less frequent codons" are present in the at least one
RNA of the inventive combination vaccine or any further coding nucleic acid comprised
in the inventive combination vaccine to an increased extent, the corresponding modified
RNA is translated to a significantly poorer degree than in the case where codons coding
for more frequent tRNAs are present. Preferably, the coding region of the at least
one RNA of the inventive combination vaccine or any further coding nucleic acid comprised
in the inventive combination vaccine is modified compared to the corresponding region
of the wild type RNA or coding sequence such that at least one codon of the wild type
sequence which codes for a tRNA which is relatively rare or less frequent in the cell
is exchanged for a codon which codes for a tRNA which is more or most frequent in
the cell and carries the same amino acid as the relatively rare or less frequent tRNA.
By this modification, the sequences of the at least one RNA of the inventive combination
vaccine or any further coding nucleic acid comprised in the inventive combination
vaccine can be modified such that codons for which more frequently occurring tRNAs
are available are inserted. In other words, according to the invention, by this modification
all codons of the wild type sequence which code for a tRNA which is relatively rare
in the cell can in each case be exchanged for a codon which codes for a respective
tRNA which is relatively frequent in the cell and which, in each case, carries the
same amino acid as the relatively rare tRNA. Furthermore, it is particularly preferable
to link the sequential G/C content which is increased, in particular maximized, in
the modified at least one RNA of the inventive combination vaccine or any further
coding nucleic acid comprised in the combination vaccine with the "frequent" codons
without modifying the amino acid sequence of the protein encoded by the coding region
of the RNA or of the coding nucleic acid. This preferred embodiment allows provision
of a particularly efficiently translated and stabilized (modified) at least one RNA
of the combination vaccine or any further nucleic acid comprised in the inventive
combination vaccine.
[0100] Substitutions, additions or eliminations of bases are preferably carried out using
a DNA matrix for preparation of the nucleic acid molecule by techniques of the well
known site directed mutagenesis or with an oligonucleotide ligation. In such a process,
for preparation of the at least one RNA of the inventive combination vaccine as defined
herein a corresponding DNA molecule may be transcribed
in vitro. This DNA matrix preferably comprises a suitable promoter, e.g. a T7 or SP6 promoter,
for
in vitro transcription, which is followed by the desired nucleotide sequence for the at least
one RNA to be prepared and a termination signal for
in vitro transcription. The DNA molecule, which forms the matrix of the at least one RNA of
interest, may be prepared by fermentative proliferation and subsequent isolation as
part of a plasmid which can be replicated in bacteria. Plasmids which may be mentioned
as suitable for the present invention are e.g. the plasmids pT7Ts (GenBank accession
number U26404;
Lai et al., Development 1995, 121: 2349 to 2360), pGEM
® series, e.g. pGEM
®-1 (GenBank accession number X65300; from Promega) and pSP64 (GenBank accession number
X65327); cf. also
Mezei and Storts, Purification of PCR Products, in: Griffin and Griffin (ed.), PCR
Technology: Current Innovation, CRC Press, Boca Raton, FL, 2001.
[0101] Additionally, nucleic acid molecules used, e.g. the at least one RNA of the inventive
combination vaccine or any further nucleic acid molecule as defined herein, may be
prepared using any method known in the art, including synthetic methods such as e.g.
solid phase synthesis, as well as
in vitro methods, such as
in vitro transcription reactions.
[0102] According to one embodiment of the present invention the at least one RNA of the
inventive combination vaccine or any further nucleic acid comprised in the inventive
combination vaccine may be administered naked without being associated with any further
vehicle, transfection or complexation agent for increasing the transfection efficiency
and/or the immunostimulatory properties of the at least one RNA or of further comprised
nucleic acid.
[0103] In another preferred embodiment, the at least one RNA of the inventive combination
vaccine or any other nucleic acid comprised in the inventive combination vaccine according
to the invention may be formulated together with a cationic or polycationic compound
and/or with a polymeric carrier. Accordingly, in a further embodiment of the invention
it is preferred that the at least one RNA or any other nucleic acid comprised in the
inventive combination vaccine is associated with or complexed with a cationic or polycationic
compound or a polymeric carrier, optionally in a weight ratio selected from a range
of about 6:1 (w/w) to about 0.25:1 (w/w), more preferably from about 5:1 (w/w) to
about 0.5:1 (w/w), even more preferably of about 4:1 (w/w) to about 1:1 (w/w) or of
about 3:1 (w/w) to about 1:1 (w/w), and most preferably a ratio of about 3:1 (w/w)
to about 2:1 (w/w) of RNA to cationic or polycationic compound and/or with a polymeric
carrier; or optionally in a nitrogen/phosphate ratio of RNA to cationic or polycationic
compound and/or polymeric carrier in the range of about 0.1-10, preferably in a range
of about 0.3-4 or 0.3-1, and most preferably in a range of about 0.5-1 or 0.7-1, and
even most preferably in a range of about 0.3-0.9 or 0.5-0.9.
[0104] Thereby, the at least one RNA of the inventive combination vaccine or any other nucleic
acid comprised in the inventive combination vaccine can also be associated with a
vehicle, transfection or complexation agent for increasing the transfection efficiency
and/or the immunostimulatory properties of the at least one RNA or of optionally comprised
further included nucleic acids.
[0105] Cationic or polycationic compounds, being particularly preferred agents in this context
include protamine, nucleoline, spermine or spermidine, or other cationic peptides
or proteins, such as poly-L-lysine (PLL), poly-arginine, basic polypeptides, cell
penetrating peptides (CPPs), including HIV-binding peptides, HIV-1 Tat (HIV), Tat-derived
peptides, Penetratin, VP22 derived or analog peptides, HSV VP22 (Herpes simplex),
MAP, KALA or protein transduction domains (PTDs), PpT620, prolin-rich peptides, arginine-rich
peptides, lysine-rich peptides, MPG-peptide(s), Pep-1, L-oligomers, Calcitonin peptide(s),
Antennapedia-derived peptides (particularly from
Drosophila antennapedia)
, pAntp, plsl, FGF, Lactoferrin, Transportan, Buforin-2, Bac715-24, SynB, SynB(1),
pVEC, hCT-derived peptides, SAP, or histones.
[0106] In this context protamine is particularly preferred.
[0107] Additionally, preferred cationic or polycationic proteins or peptides may be selected
from the following proteins or peptides having the following total formula (III):
(Arg)
l;(Lys)
m;(His)
n;(Orn)
o;(Xaa)
x, (formula (III))
wherein I + m + n +o + x = 8-15, and !, m, n or o independently of each other may
be any number selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15,
provided that the overall content of Arg, Lys, His and Orn represents at least 50%
of all amino acids of the oligopeptide; and Xaa may be any amino acid selected from
native (= naturally occurring) or non-native amino acids except of Arg, Lys, His or
Orn; and x may be any number selected from 0, 1, 2, 3 or 4, provided, that the overall
content of Xaa does not exceed 50 % of all amino acids of the oligopeptide. Particularly
preferred cationic peptides in this context are e.g. Arg
7, Arg
8, Arg
9, H
3R
9, R
9H
3, H
3R
9H
3, YSSR
9SSY, (RKH)
4, Y(RKH)
2R, etc.
[0108] Further preferred cationic or polycationic compounds, which can be used as transfection
or complexation agent may include cationic polysaccharides, for example chitosan,
polybrene, cationic polymers, e.g. polyethyleneimine (PEI), cationic lipids, e.g.
DOTMA: [1-(2,3-sioleyloxy)propyl)]-N,N,N-trimethylammonium chloride, DMRIE, di-C14-amidine,
DOTIM, SAINT, DC-Chol, BGTC, CTAP, DOPC, DODAP, DOPE: Dioleyl phosphatidylethanolamine,
DOSPA, DODAB, DOIC, DMEPC, DOGS: Dioctadecylamidoglicylspermin, DIMRI: Dimyristo-oxypropyl
dimethyl hydroxyethyl ammonium bromide, DOTAP: dioleoyloxy-3-(trimethylammonio)propane,
DC-6-14: O,O-ditetradecanoyl-N-(α-trimethylammonioacetyl)diethanolamine chloride,
CLIP1: rac-[(2,3-dioctadecyloxypropyl)(2-hydroxyethyl)]-dimethylammonium chloride,
CLIP6: rac-[2(2,3-dihexadecyloxypropyl-oxymethyloxy)ethyl]tri methylammon i um, CLIP9:
rac-[2(2,3-dihexadecyloxypropyl-oxysuccinyloxy)ethyl]-trimethylammonium, oligofectamine,
or cationic or polycationic polymers, e.g. modified polyaminoacids, such as β-aminoacid-polymers
or reversed polyamides, etc., modified polyethylenes, such as PVP (poly(N-ethyl-4-vinylpyridinium
bromide)), etc., modified acrylates, such as pDMAEMA (poly(dimethylaminoethyl methylacrylate)),
etc., modified amidoamines such as pAMAM (poly(amidoamine)), etc., modified polybetaaminoester
(PBAE), such as diamine end modified 1,4 butanediol diacrylate-co-5-amino-1-pentanol
polymers, etc., dendrimers, such as polypropylamine dendrimers or pAMAM based dendrimers,
etc., polyimine(s), such as PEI: poly(ethyleneimine), poly(propyleneimine), etc.,
polyallylamine, sugar backbone based polymers, such as cyclodextrin based polymers,
dextran based polymers, chitosan, etc., silan backbone based polymers, such as PMOXA-PDMS
copolymers, etc., blockpolymers consisting of a combination of one or more cationic
blocks (e.g. selected from a cationic polymer as mentioned above) and of one or more
hydrophilic or hydrophobic blocks (e.g. polyethyleneglycole); etc.
[0109] A polymeric carrier according to the invention might be a polymeric carrier formed
by disulfide-crosslinked cationic components. The disulfide-crosslinked cationic components
may be the same or different from each other. The polymeric carrier can also contain
further components. It is also particularly preferred that the polymeric carrier of
the present invention comprises mixtures of cationic peptides, proteins or polymers
and optionally further components as defined herein, which are crosslinked by disulfide
bonds as described herein.
[0110] In this context the cationic components, which form basis for the polymeric carrier
by disulfide-crosslinkage, are typically selected from any suitable cationic or polycationic
peptide, protein or polymer suitable for this purpose, particular any cationic or
polycationic peptide, protein or polymer capable to complex a nucleic acid as defined
according to the present invention, and thereby preferably condensing the nucleic
acid. The cationic or polycationic peptide, protein or polymer, is preferably a linear
molecule, however, branched cationic or polycationic peptides, proteins or polymers
may also be used.
[0111] Every disulfide-crosslinking cationic or polycationic protein, peptide or polymer
of the polymeric carrier, which may be used to complex the at least one RNA of the
combination vaccine or any further nucleic acid comprised in the combination vaccine
contains at least one -SH moiety, most preferably at least one cysteine residue or
any further chemical group exhibiting an -SH moiety, capable to form a disulfide linkage
upon condensation with at least one further cationic or polycationic protein, peptide
or polymer as cationic component of the polymeric carrier as mentioned herein.
[0112] As defined above, the polymeric carrier, which may be used to complex the at least
one RNA of the combination vaccine or any further nucleic acid comprised in the combination
vaccine may be formed by disulfide-crosslinked cationic (or polycationic) components.
[0113] According to one first alternative, at least one cationic (or polycationic) component
of the polymeric carrier, which may be used to complex the at least one RNA of the
inventive combination vaccine or any further nucleic acid comprised in the inventive
combination vaccine may be selected from cationic or polycationic peptides or proteins.
Such cationic or polycationic peptides or proteins preferably exhibit a length of
about 3 to 100 amino acids, preferably a length of about 3 to 50 amino acids, more
preferably a length of about 3 to 25 amino acids, e.g. a length of about 3 to 10,
5 to 15, 10 to 20 or 15 to 25 amino acids. Alternatively or additionally, such cationic
or polycationic peptides or proteins may exhibit a molecular weight of about 0.01
kDa to about 100 kDa, including a molecular weight of about 0.5 kDa to about 100 kDa,
preferably of about 10 kDa to about 50 kDa, even more preferably of about 10 kDa to
about 30 kDa.
[0114] In the specific case that the cationic component of the polymeric carrier, which
may be used to complex the at least one RNA of the inventive combination vaccine or
any further nucleic acid comprised in the inventive combination vaccine comprises
a cationic or polycationic peptide or protein, the cationic properties of the cationic
or polycationic peptide or protein or of the entire polymeric carrier, if the polymeric
carrier is entirely composed of cationic or polycationic peptides or proteins, may
be determined upon its content of cationic amino acids. Preferably, the content of
cationic amino acids in the cationic or polycationic peptide or protein and/or the
polymeric carrier is at least 10%, 20%, or 30%, preferably at least 40%, more preferably
at least 50%, 60% or 70%, but also preferably at least 80%, 90%, or even 95%, 96%,
97%, 98%, 99% or 100%, most preferably at least 30%, 40%, 50%, 60%, 70%, 80%, 90%,
95%, 96%, 97%, 98%, 99% or 100%, or may be in the range of about 10% to 90%, more
preferably in the range of about 15% to 75%, even more preferably in the range of
about 20% to 50%, e.g. 20, 30, 40 or 50%, or in a range formed by any two of the afore
mentioned values, provided, that the content of all amino acids, e.g. cationic, lipophilic,
hydrophilic, aromatic and further amino acids, in the cationic or polycationic peptide
or protein, or in the entire polymeric carrier, if the polymeric carrier is entirely
composed of cationic or polycationic peptides or proteins, is 100%.
[0115] Preferably, such cationic or polycationic peptides or proteins of the polymeric carrier,
which comprise or are additionally modified to comprise at least one -SH moiety, are
selected from, without being restricted thereto, cationic peptides or proteins such
as protamine, nucleoline, spermine or spermidine, oligo- or poly-L-lysine (PLL), basic
polypeptides, oligo or poly-arginine, cell penetrating peptides (CPPs), chimeric CPPs,
such as Transportan, or MPG peptides, HIV-binding peptides, Tat, HIV-1 Tat (HIV),
Tat-derived peptides, members of the penetratin family, e.g. Penetratin, Antennapedia-derived
peptides (particularly from
Drosophila antennapedia)
, pAntp, plsl, etc., antimicrobial-derived CPPs e.g. Buforin-2, Bac715-24, SynB, SynB(1),
pVEC, hCT-derived peptides, SAP, MAP, PpTG20, Loligomere, FGF, Lactoferrin, histones,
VP22 derived or analog peptides, Pestivirus Erns, HSV, VP22 (Herpes simplex), MAP,
KALA or protein transduction domains (PTDs, PpT620, prolin-rich peptides, arginine-rich
peptides, lysine-rich peptides, Pep-1, L-oligomers, Calcitonin peptide(s), etc.
[0116] Alternatively or additionally, such cationic or polycationic peptides or proteins
of the polymeric carrier, which comprise or are additionally modified to comprise
at least one -SH moiety, are selected from, without being restricted thereto, following
cationic peptides having the following sum formula (IV):
{(Arg)
l;(Lys)
m;(His)
o;(Orn)
o;(Xaa)
x}; formula (IV)
wherein I + m + n +o + x = 3-100, and !, m, n or o independently of each other is
any number selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,
17, 18, 19, 20, 21-30, 31-40, 41-50, 51-60, 61-70, 71-80, 81-90 and 91-100 provided
that the overall content of Arg (Arginine), Lys (Lysine), His (Histidine) and Orn
(Ornithine) represents at least 10% of all amino acids of the oligopeptide; and Xaa
is any amino acid selected from native (= naturally occurring) or non-native amino
acids except of Arg, Lys, His or Orn; and x is any number selected from 0, 1, 2, 3,
4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21-30, 31-40, 41-50,
51-60, 61-70, 71-80, 81-90, provided, that the overall content of Xaa does not exceed
90 % of all amino acids of the oligopeptide. Any of amino acids Arg, Lys, His, Orn
and Xaa may be positioned at any place of the peptide. In this context cationic peptides
or proteins in the range of 7-30 amino acids are particular preferred. Even more preferred
peptides of this formula are oligoarginines such as e.g. Arg
7, Arg
8, Arg
9, Arg
12, His
3Arg
9, Arg
9His
3, His
3Arg
9His
3, His
6Arg
9His
6, His
3Arg
4His
3, His
6Arg
4His
6, TyrSer
2Arg
9Ser
2Tyr, (ArgLysHis)
4, Tyr(ArgLysHis)
2Arg, etc.
[0117] According to a one further particular preferred embodiment, the cationic or polycationic
peptide or protein of the polymeric carrier, when defined according to formula {(Arg)
l;(Lys)
m;(His)
n;(Orn)
o;(Xaa)
x} (formula (IV)) as shown above and which comprises or is additionally modified to
comprise at least one -SH moiety, may be, without being restricted thereto, selected
from subformula (lVa):
{(Arg)
l;(Lys)
m;(His)
n;(Orn)
o;(Xaa')
x(Cys)
y} formula (lVa)
wherein (Arg)
l;(Lys)
m;(His)
n;(Orn)
o; and x are as defined herein, Xaa' is any amino acid selected from native (= naturally
occurring) or non-native amino acids except of Arg, Lys, His, Orn or Cys and y is
any number selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,
17, 18, 19, 20, 21-30, 31-40, 41-50, 51-60, 61-70, 71-80 and 81-90, provided that
the overall content of Arg (Arginine), Lys (Lysine), His (Histidine) and Orn (Ornithine)
represents at least 10% of all amino acids of the oligopeptide.
[0118] This embodiment may apply to situations, wherein the cationic or polycationic peptide
or protein of the polymeric carrier, e.g. when defined according to empirical formula
(Arg)
l;(Lys)
m,;(His)
n;(Orn)
o;(Xaa)
x (formula (IV)) as shown above, comprises or has been modified with at least one cysteine
as -SH moiety in the above meaning such that the cationic or polycationic peptide
as cationic component carries at least one cysteine, which is capable to form a disulfide
bond with other components of the polymeric carrier.
[0119] According to another particular preferred embodiment, the cationic or polycationic
peptide or protein of the polymeric carrier, when defined according to formula {(Arg)
l;(Lys)
m;(His)
n;(Orn)
o;(Xaa)
x} (formula (IV)) as shown above, may be, without being restricted thereto, selected
from subformula (IVb):
Cys
1 {(Arg)
l;(Lys)
m;(His)
n;(Orn)
o;(Xaa)
x} Cys
2 formula (!Vb)
wherein empirical formula {(Arg)
l;(Lys)
m;(His)
n;(Orn)
o;(Xaa)
x} (formula (IV)) is as defined herein and forms a core of an amino acid sequence according
to (semiempirical) formula (IV) and wherein Cys
1 and Cys
2 are Cysteines proximal to, or terminal to (Arg)
l;(Lys)
m;(His)
n;(Orn)
o;(Xaa)
x. This embodiment may apply to situations, wherein the cationic or polycationic peptide
or protein of the polymeric carrier, which may be used to complex the at least one
RNA of the inventive combination vaccine, e.g. when defined according to empirical
formula (Arg)
l;(Lys)
m;(His)
n;(Orn)
o;(Xaa)
x (formula (IV)) as shown above, has been modified with at least two cysteines as -SH
moieties in the above meaning such that the cationic or polycationic peptide of the
inventive polymeric carrier carries at least two (terminal) cysteines, which are capable
to form a disulfide bond with other components of the polymeric carrier.
[0120] According to a second alternative, at least one cationic (or polycationic) component
of the polymeric carrier may be selected from e.g. any (non-peptidic) cationic or
polycationic polymer suitable in this context, provided that this (non-peptidic) cationic
or polycationic polymer exhibits or is modified to exhibit at least one -SH-moiety,
which provide for a disulfide bond linking the cationic or polycationic polymer with
another component of the polymeric carrier as defined herein. Thus, likewise as defined
herein, the polymeric carrier may comprise the same or different cationic or polycationic
polymers.
[0121] In the specific case that the cationic component of the polymeric carrier comprises
a (non-peptidic) cationic or polycationic polymer the cationic properties of the (non-peptidic)
cationic or polycationic polymer may be determined upon its content of cationic charges
when compared to the overall charges of the components of the cationic polymer. Preferably,
the content of cationic charges in the cationic polymer at a (physiological) pH as
defined herein is at least 10%, 20%, or 30%, preferably at least 40%, more preferably
at least 50%, 60% or 70%, but also preferably at least 80%, 90%, or even 95%, 96%,
97%, 98%, 99% or 100%, most preferably at least 30%, 40%, 50%, 60%, 70%, 80%, 90%,
95%, 96%, 97%, 98%, 99% or 100%, or may be in the range of about 10% to 90%, more
preferably in the range of about 30% to 100%, even preferably in the range of about
50% to 100%, e.g. 50, 60, 70, 80%, 90% or 100%, or in a range formed by any two of
the afore mentioned values, provided, that the content of all charges, e.g. positive
and negative charges at a (physiological) pH as defined herein, in the entire cationic
polymer is 100%.
[0122] Preferably, the (non-peptidic) cationic component of the polymeric carrier represents
a cationic or polycationic polymer, typically exhibiting a molecular weight of about
0.1 or 0.5 kDa to about 100 kDa, preferably of about 1 kDa to about 75 kDa, more preferably
of about 5 kDa to about 50 kDa, even more preferably of about 5 kDa to about 30 kDa,
or a molecular weight of about 10 kDa to about 50 kDa, even more preferably of about
10 kDa to about 30 kDa. Additionally, the (non-peptidic) cationic or polycationic
polymer typically exhibits at least one -SH-moiety, which is capable to form a disulfide
linkage upon condensation with either other cationic components or other components
of the polymeric carrier as defined herein.
[0123] In the above context, the (non-peptidic) cationic component of the polymeric carrier,
which may be used to complex the at least one RNA of the inventive combination vaccine
or any further nucleic acid comprised in the inventive combination vaccine may be
selected from acrylates, modified acrylates, such as pDMAEMA (poly(dimethylaminoethyl
methylacrylate)), chitosanes, aziridines or 2-ethyl-2-oxazoline (forming oligo ethylenimines
or modified oligoethylenimines), polymers obtained by reaction of bisacrylates with
amines forming oligo beta aminoesters or poly amido amines, or other polymers like
polyesters, polycarbonates, etc. Each molecule of these (non-peptidic) cationic or
polycationic polymers typically exhibits at least one -SH-moiety, wherein these at
least one -SH-moiety may be introduced into the (non-peptidic) cationic or polycationic
polymer by chemical modifications, e.g. using imonothiolan, 3-thio propionic acid
or introduction of -SH-moieties containing amino acids, such as cysteine or any further
(modified) amino acid. Such -SH-moieties are preferably as already defined above.
[0124] According to a particularly preferred embodiment, the further component, which may
be contained in the polymeric carrier, and which may be used to complex the at least
one RNA of the inventive combination vaccine or any further nucleic acid comprised
in the inventive combination vaccine or which may be used to modify the different
(short) cationic or polycationic peptides or (non-peptidic) polymers forming basis
for the polymeric carrier or the biophysical/biochemical properties of the polymeric
carrier as defined herein, is an amino acid component (AA). According to the present
invention, the amino acid component (AA) comprises a number of amino acids preferably
in a range of about 1 to 100, preferably in a range of about 1 to 50, more preferably
selected from a number comprising 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or
15-20, or may be selected from a range formed by any two of the afore mentioned values.
In this context the amino acids of amino acid component (AA) can be chosen independently
from each other. For example if in the polymeric carrier two or more (AA) components
are present they can be the same or can be different from each other.
[0125] The amino acid component (AA) may contain or may be flanked (e.g. terminally) by
a -SH containing moiety, which allows introducing this component (AA) via a disulfide
bond into the polymeric carrier as defined herein. In the specific case that the -SH
containing moiety represents a cysteine, the amino acid component (AA) may also be
read as -Cys-(AA)-Cys-wherein Cys represents cysteine and provides for the necessary
-SH-moiety for a disulfide bond. The -SH containing moiety may be also introduced
into amino acid component (AA) using any of modifications or reactions as shown above
for the cationic component or any of its components.
[0126] Furthermore, the amino acid component (AA) may be provided with two -SH-moieties
(or even more), e.g. in a form represented by formula HS-(AA)-SH to allow binding
to two functionalities via disulfide bonds, e.g. if the amino acid component (AA)
is used as a linker between two further components (e.g. as a linker between two cationic
polymers).
[0127] Alternatively, the amino acid component (AA) may be provided with other functionalities
as already described above for the other components of the polymeric carrier, which
allow binding of the amino acid component (AA) to any of components of the polymeric
carrier.
[0128] Thus, according to the present invention, the amino acid component (AA) of the polymeric
carrier may be bound to further components of the polymeric carrier, which may be
used to complex the at least one RNA of the inventive combination vaccine or any further
nucleic acid comprised in the inventive combination vaccine with or without using
a disulfide linkage.
[0129] According to a further and particularly preferred alternative, the amino acid component
(AA), may be used to modify the polymeric carrier, particularly the content of cationic
components in the polymeric carrier as defined above.
[0130] In the context of the present invention, the amino acid component (AA) may be selected
from the following alternatives: an aromatic amino acid component, a hydrophilic (and
preferably non charged polar) amino acid component, a lipophilic amino acid component,
or a weak basic amino acid component.
[0131] According to a further alternative, the amino acid component (AA) may be a signal
peptide or signal sequence, a localisation signal or sequence, a nuclear localisation
signal or sequence (NLS), an antibody, a cell penetrating peptide (e.g. TAT), etc.
Additionally, according to another alternative, the amino acid component (AA) may
be a functional peptide or protein, which may modulate the functionality of the polymeric
carrier accordingly. Such functional peptides or proteins as the amino acid component
(AA) preferably comprise any peptides or proteins as defined herein, e.g. as defined
below as therapeutically active proteins. According to one alternative, such further
functional peptides or proteins may comprise so called cell penetrating peptides (CPPs)
or cationic peptides for transportation.
[0132] According to a last alternative, the amino acid component (AA) may consist of any
peptide or protein which can execute any favourable function in the cell. Particularly
preferred are peptides or proteins selected from therapeutically active proteins or
peptides, from antigens, e.g. tumour antigens, pathogenic antigens (animal antigens,
viral antigens, protozoan antigens, bacterial antigens, allergic antigens), autoimmune
antigens, or further antigens, from allergens, from antibodies, from immunostimulatory
proteins or peptides, from antigen-specific T cell receptors, or from any other protein
or peptide suitable for a specific (therapeutic) application. Particularly preferred
are peptide epitopes from antigens, particularly of the virus family
Paramyxoviridae and/or of the virus family
Orthomyxoviridae as defined herein, and more particularly of the F protein of the virus family
Paramyxoviridae and/or of the HA protein of the virus family
Orthomyxoviridae as defined herein.
[0133] The polymeric carrier, which may be used to complex the at least one RNA of the inventive
combination vaccine or any further nucleic acid comprised in inventive combination
vaccine may comprise at least one of the above mentioned cationic or polycationic
peptides, proteins or polymers or further components, e.g. (AA), wherein any of the
above alternatives may be combined with each other, and may be formed by polymerizing
same in a polymerization condensation reaction via their-SH-moieties.
[0134] Further, the polymeric carrier may be selected from a polymeric carrier molecule
according to generic formula (V):
L-P
1-S-[S-P
2-S]
n-S-P
3-L formula (V)
wherein,
- P1 and P3
- are different or identical to each other and represent a linear or branched hydrophilic
polymer chain, each P1 and P3 exhibiting at least one -SH-moiety, capable to form a disulfide linkage upon condensation
with component P2, or alternatively with (AA), (AA)x, or [(AA)x]z if such components are used as a linker between P1 and P2 or P3 and P2) and/or with further components (e.g. (AA), (AA)x, [(AA)x]z or L), the linear or branched hydrophilic polymer chain selected independent from
each other from polyethylene glycol (PEG), poly-N-(2-hydroxypropyl)methacrylamide, poly-2-(methacryloyloxy)ethyl phosphorylcholines,
poly(hydroxyalkyl L-asparagine), poly(2-(methacryloyloxy)ethyl phosphorylcholine),
hydroxyethyl starch or poly(hydroxyalkyl L-glutamine), wherein the hydrophilic polymer
chain exhibits a molecular weight of about 1 kDa to about 100 kDa, preferably of about
2 kDa to about 25 kDa; or more preferably of about 2 kDa to about 10 kDa, e.g. about
5 kDa to about 25 kDa or 5 kDa to about 10 kDa;
- P2
- is a cationic or polycationic peptide or protein, e.g. as defined above for the polymeric
carrier formed by disulfide-crosslinked cationic components, and preferably having
a length of about 3 to about 100 amino acids, more preferably having a length of about
3 to about 50 amino acids, even more preferably having a length of about 3 to about
25 amino acids, e.g. a length of about 3 to 10, 5 to 15, 10 to 20 or 15 to 25 amino
acids, more preferably a length of about 5 to about 20 and even more preferably a
length of about 10 to about 20; or
is a cationic or polycationic polymer, e.g. as defined above for the polymeric carrier
formed by disulfide-crosslinked cationic components, typically having a molecular
weight of about 0.5 kDa to about 30 kDa, including a molecular weight of about 1 kDa
to about 20 kDa, even more preferably of about 1.5 kDa to about 10 kDa, or having
a molecular weight of about 0.5 kDa to about 100 kDa, including a molecular weight
of about 10 kDa to about 50 kDa, even more preferably of about 10 kDa to about 30
kDa; each P2 exhibiting at least two -SH-moieties, capable to form a disulfide linkage upon condensation
with further components P2 or component(s) P1 and/or P3 or alternatively with further components (e.g. (AA), (AA)x, or [(AA)x]z);
- -S-S-
- is a (reversible) disulfide bond (the brackets are omitted for better readability),
wherein 5 preferably represents sulphur or a -SH carrying moiety, which has formed
a (reversible) disulfide bond. The (reversible) disulfide bond is preferably formed
by condensation of -SH-moieties of either components P1 and P2, P2 and P2, or P2 and P3, or optionally of further components as defined herein (e.g. L, (AA), (AA)x, [(AA)x]z, etc); The -SH-moiety may be part of the structure of these components or added by
a modification as defined below;
- L
- is an optional ligand, which may be present or not, and may be selected independent
from the other from RGD, Transferrin, Folate, a signal peptide or signal sequence,
a localization signal or sequence, a nuclear localization signal or sequence (NLS),
an antibody, a cell penetrating peptide, (e.g. TAT or KALA), a ligand of a receptor
(e.g. cytokines, hormones, growth factors etc), small molecules (e.g. carbohydrates
like mannose or galactose or synthetic ligands), small molecule agonists, inhibitors
or antagonists of receptors (e.g. RGD peptidomimetic analogues), or any further protein
as defined herein, etc.;
- n
- is an integer, typically selected from a range of about 1 to 50, preferably from a
range of about 1, 2 or 3 to 30, more preferably from a range of about 1, 2, 3, 4,
or 5 to 25, or a range of about 1, 2, 3, 4, or 5 to 20, or a range of about 1, 2,
3, 4, or 5 to 15, or a range of about 1, 2, 3, 4, or 5 to 10, including e.g. a range
of about 4 to 9, 4 to 10, 3 to 20, 4 to 20, 5 to 20, or 10 to 20, or a range of about
3 to 15, 4 to 15, 5 to 15, or 10 to 15, or a range of about 6 to 11 or 7 to 10. Most
preferably, n is in a range of about 1, 2, 3, 4, or 5 to 10, more preferably in a
range of about 1, 2, 3, or 4 to 9, in a range of about 1, 2, 3, or 4 to 8, or in a
range of about 1, 2, or 3 to 7.
[0135] Each of hydrophilic polymers P
1 and P
3 typically exhibits at least one -SH-moiety, wherein the at least one -SH-moiety is
capable to form a disulfide linkage upon reaction with component P
2 or with component (AA) or (AA)
x, if used as linker between P
1 and P
2 or P
3 and P
2 as defined below and optionally with a further component, e.g. L and/or (AA) or (AA)
x, e.g. if two or more -SH-moieties are contained. The following subformulae "P
1-S-S-P
2" and "P
2-S-S-P
3" within generic formula (V) above (the brackets are omitted for better readability),
wherein any of S, P
1 and P
3 are as defined herein, typically represent a situation, wherein one-SH-moiety of
hydrophilic polymers P
1 and P
3 was condensed with one -SH-moiety of component P
2 of generic formula (V) above, wherein both sulphurs of these -SH-moieties form a
disulfide bond -S-S- as defined herein in formula (V). These -SH-moieties are typically
provided by each of the hydrophilic polymers P
1 and P
3, e.g. via an internal cysteine or any further (modified) amino acid or compound which
carries a -SH moiety. Accordingly, the subformulae "P
1S-S-P
2" and "P
2-S-S-P
3" may also be written as "P'-Cys-Cys-P
2" and "P
2-Cys-Cys-P
3", if the -SH- moiety is provided by a cysteine, wherein the term Cys-Cys represents
two cysteines coupled via a disulfide bond, not via a peptide bond. In this case,
the term "-S-S-" in these formulae may also be written as "-S-Cys", as "-Cys-S" or
as "-Cys-Cys-". In this context, the term "-Cys-Cys-" does not represent a peptide
bond but a linkage of two cysteines via their -SH-moieties to form a disulfide bond.
Accordingly, the term "-Cys-Cys-" also may be understood generally as "-(Cys-S)-(S-Cys)-",
wherein in this specific case S indicates the sulphur of the -SH-moiety of cysteine.
Likewise, the terms "-S-Cys" and "-Cys-S" indicate a disulfide bond between a -SH
containing moiety and a cysteine, which may also be written as "-S-(S-Cys)" and "-(Cys-S)-S".
Alternatively, the hydrophilic polymers P
1 and P
3 may be modified with a -SH moiety, preferably via a chemical reaction with a compound
carrying a -SH moiety, such that each of the hydrophilic polymers P
1 and P
3 carries at least one such -SH moiety. Such a compound carrying a -SH moiety may be
e.g. an (additional) cysteine or any further (modified) amino acid, which carries
a -SH moiety. Such a compound may also be any non-amino compound or moiety, which
contains or allows to introduce a -SH moiety into hydrophilic polymers P
1 and P
3 as defined herein. Such non-amino compounds may be attached to the hydrophilic polymers
P
1 and P
3 of formula (VI) of the polymeric carrier according to the present invention via chemical
reactions or binding of compounds, e.g. by binding of a 3-thio propionic acid or thioimolane,
by amide formation (e.g. carboxylic acids, sulphonic acids, amines, etc), by Michael
addition (e.g maleinimide moieties, α,β unsatured carbonyls, etc), by click chemistry
(e.g. azides or alkines), by alkene/alkine methatesis (e.g. alkenes or alkines), imine
or hydrozone formation (aldehydes or ketons, hydrazins, hydroxylamins, amines), complexation
reactions (avidin, biotin, protein G) or components which allow S
n-type substitution reactions (e.g halogenalkans, thiols, alcohols, amines, hydrazines,
hydrazides, sulphonic acid esters, oxyphosphonium salts) or other chemical moieties
which can be utilized in the attachment of further components. A particularly preferred
PEG derivate in this context is alpha-Methoxy-omega-mercapto poly(ethylene glycol).
In each case, the SH-moiety, e.g. of a cysteine or of any further (modified) amino
acid or compound, may be present at the terminal ends or internally at any position
of hydrophilic polymers P
1 and P
3. As defined herein, each of hydrophilic polymers P
1 and P
3 typically exhibits at least one -SH-moiety preferably at one terminal end, but may
also contain two or even more - SH-moieties, which may be used to additionally attach
further components as defined herein, preferably further functional peptides or proteins
e.g. a ligand, an amino acid component (AA) or (AA)
x, antibodies, cell penetrating peptides or enhancer peptides (e.g. TAT, KALA), etc.
[0136] In the context of the entire formula (V) of the inventive polymeric carrier may be
preferably defined as follows:
L-P
1-S-[Cys-P
2-Cys]
n-S-P
3-L formula (VI)
wherein L, P
1, P
2, P
3 and n are as defined herein, S is sulphur and each Cys provides for one -SH-moiety
for the disulfide bond.
[0137] The amino acid component (AA) or (AA)
x in the polymeric carrier of formula (V or VI), e.g. as defined above for the polymeric
carrier formed by disulfide-crosslinked cationic components may also occur as a mixed
repetitive amino acid component [(AA)
x]
z, wherein the number of amino acid components (AA) or (AA)
x is further defined by integer z. In this context, z may be selected from a range
of about 1 to 30, preferably from a range of about 1 to 15, more preferably 1 to 10
or 1 to 5 and even more preferably selected from a number selected from 1, 2, 3, 4,
5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15, or may be selected from a range formed by
any two of the afore mentioned values.
[0138] According to a specific and particularly preferred alternative, the amino acid component
(AA) or (AA)
x, preferably written as S-(AA)
x-S or [S-(AA)
x-S] may be used to modify component P
2, particularly the content of component S-P
2-S in repetitive component [S-P
2-S]
n of the polymeric carrier of formula (V) above. This may be represented in the context
of the entire polymeric carrier according to formula (VI) e.g. by following formula
(Via):
L-P
1-S-{ [S-P
2-S]
a[S-(AA)
x-S]
b}-S-P
3-L, formula (VIa)
wherein x, S, L, AA, P
1, P
2 and P
3 are preferably as defined herein. In formula (Vla) above, any of the single components
[S-P
2-S] and [S-(AA)
x-S] may occur in any order in the subformula {[S-P
2-S]
a[S-(AA)
x-S]
b}. The numbers of single components [S-P
2-S] and [S-(AA)
x-S] in the subformula {[S-P
2-S]
a[S-(AA)
x-S]
b} are determined by integers a and b, wherein a + b = n. n is an integer and is defined
as above for formula (V).
[0139] According to another embodiment, the polymeric carrier, which may be used to complex
the at least one RNA of the combination vaccine or any further nucleic acid comprised
in the combination vaccine or single components thereof, e.g. of the above mentioned
cationic or polycationic peptides, proteins or polymers or further components, e.g.
(AA), may be further modified with a ligand, preferably a carbohydrate, more preferably
a sugar, even more preferably mannose.
[0140] According to one specific embodiment, the entire polymeric carrier may be formed
by a polymerization condensation (of at least one) of the above mentioned cationic
or polycationic peptides, proteins or polymers or further components, e.g. (AA), via
their -SH-moieties in a first step and complexing the at least one RNA of the inventive
combination vaccine or any further nucleic acid comprised in the inventive combination
vaccine to such a polymeric carrier in a second step. The polymeric carrier may thus
contain a number of at least one or even more of the same or different of the above
defined cationic or polycationic peptides, proteins or polymers or further components,
e.g. (AA), the number preferably determined by the above range.
[0141] According to one alternative specific embodiment, the polymeric carrier, which may
be used to complex the at least one RNA of the inventive combination vaccine or any
further nucleic acid comprised in the inventive combination vaccine is formed by carrying
out the polymerization condensation of at least one of the above mentioned cationic
or polycationic peptides, proteins or polymers or further components, e.g. (AA), via
their -SH-moieties simultaneously to complexing the at least one RNA of the inventive
combination vaccine or any further nucleic acid comprised in the inventive combination
vaccine to the (in situ prepared) polymeric carrier. Likewise, the polymeric carrier
may thus also here contain a number of at least one or even more of the same or different
of the above defined cationic or polycationic peptides, proteins or polymers or further
components, e.g. (AA), the number preferably determined by the above range.
[0142] In this context it is particularly preferred that the at least one RNA of the inventive
combination vaccine or any further coding nucleic acid in the inventive combination
vaccine is complexed at least partially with a cationic or polycationic compound and/or
a polymeric carrier, preferably cationic proteins or peptides. Partially means that
only a part of the at least one RNA is complexed with a cationic compound and that
the rest of the at least one RNA is comprised in the combination vaccine in uncomplexed
form ("free"). Preferably the ratio of complexed RNA to: free RNA in the combination
vaccine is selected from a range. of about 5:1 (w/w) to about 1:10 (w/w), more preferably
from a range of about 4:1 (w/w) to about 1:8 (w/w), even more preferably from a range
of about 3:1 (w/w) to about 1:5 (w/w) or 1:3 (w/w), and most preferably the ratio
of complexed RNA to free RNA in the inventive combination vaccine is selected from
a ratio of about 1:1 (w/w).
[0143] The complexed RNA in the inventive combination vaccine, is preferably prepared according
to a first step by complexing the at least one RNA with a cationic or polycationic
compound and/or with a polymeric carrier, preferably as defined herein, in a specific
ratio to form a stable complex. In this context, it is highly preferable, that no
free cationic or polycationic compound or polymeric carrier or only a negligibly small
amount thereof remains in the component of the complexed RNA after complexing the
RNA. Accordingly, the ratio of the RNA and the cationic or polycationic compound and/or
the polymeric carrier in the component of the complexed RNA is typically selected
in a range that the RNA is entirely complexed and no free cationic or polycationic
compound or polymeric carrier or only a negligibly small amount thereof remains in
the composition.
[0144] Preferably the ratio of the RNA (e.g. mRNA) to the cationic or polycationic compound
and/or the polymeric carrier, preferably as defined herein, is selected from a range
of about 6:1 (w/w) to about 0,25:1 (w/w), more preferably from about 5:1 (w/w) to
about 0,5:1 (w/w), even more preferably of about 4:1 (w/w) to about 1:1 (w/w) or of
about 3:1 (w/w) to about 1:1 (w/w), and most preferably a ratio of about 3:1 (w/w)
to about 2:1 (w/w). Alternatively, the ratio of the RNA to the cationic or polycationic
compound and/or the polymeric carrier, preferably as defined herein, in the component
of the complexed RNA, may also be calculated on the basis of the nitrogen/phosphate
ratio (N/P-ratio) of the entire complex. In the context of the present invention,
an N/P-ratio is preferably in the range of about 0.1-10, preferably in a range of
about 0.3-4 and most preferably in a range of about 0.5-2 or 0.7-2 regarding the ratio
of RNA: cationic or polycationic compound and/or polymeric carrier, preferably as
defined herein, in the complex, and most preferably in a range of about 0.7-1,5, 0.5-1
or 0.7-1, and even most preferably in a range of about 0.3-0.9 or 0.5-0.9., preferably
provided that the cationic or polycationic compound in the complex is a cationic or
polycationic cationic or polycationic protein or peptide and/or the polymeric carrier
as defined above. In this specific embodiment the complexed RNA is also emcompassed
in the term "adjuvant component".
[0145] In another embodiment, the at least one antigen-providing RNA of the inventive combination
vaccine as defined above may be formulated together with an adjuvant. Such an adjuvant
may be preferably a further nucleic acid that is not encoding a further antigen but
is able to stimulate an unspecific immune response, i.e. innate immune response, by
interacting with any part of the innate immune system. Such a nucleic acid stimulating
an unspecific immune response is termed herein as "adjuvant nucleic acid".
[0146] In this context an adjuvant nucleic acid preferably comprises or consists of an oligo-
or a polynucleotide; more preferably an adjuvant nucleic acid comprises or consists
of a RNA or a DNA; even more preferably such an adjuvant nucleic acid comprising or
consisting of a RNA or a DNA being complexed with a cationic or polycationic compound
and/or with a polymeric carrier; optionally in a weight ratio selected from a range
of about 6:1 (w/w) to about 0.25:1 (w/w), more preferably from about 5:1 (w/w) to
about 0.5:1 (w/w), even more preferably of about 4:1 (w/w) to about 1:1 (w:w) or of
about 3:1 (w/w) to about 1:1 (w/w), and most preferably a ration of about 3:1 (w/w)
to about 2:1 (w/w) of adjuvant component to cationic or polycationic compound and/or
with a polymeric carrier; or optionally in a nitrogen/phosphate ratio of the adjuvant
component to cationic or polycationic compound and/or polymeric carrier in the range
of about 0.1-10, preferably in a range of about 0.3-4, most preferably in a range
of about 0.7-1 or 0.5-1, and even most preferably in a range of about 0.3-0.9 or 0.5-0.9.
Such a complexed adjuvant nucleic acid is also encompassed in the term "adjuvant component":
[0147] In other words a combination vaccine according to the invention may comprise a first
RNA encoding for an antigenic function, e.g. the RSV Fusion (F) protein, the Influenza
Hemagglutinin (HA) protein or the like, and a second nucleic acid that is acting as
an adjuvant which is called the adjuvant nucleic acid. Of course the inventive combination
vaccine may also comprise further RNAs encoding for further antigenic functions and
is also not limited to comprise only one adjuvant nucleic acid but can comprise several
different of them. Both kinds of nucleic acid, the antigen-encoding RNA and the adjuvant
nucleic acid, may be, independently from each other, complexed with a carrier as defined
above. Therefore, a cationic or polycationic compound and/or a polymeric carrier used
to complex the at least one adjuvant nucleic acid, may be selected from a cationic
or polycationic compound and/or a polymeric carrier as defined above.
[0148] In this context, an adjuvant nucleic acid, as used herein, is preferably selected
from nucleic acids which are known to bind to TLR receptors. Such an adjuvant nucleic
acid can be in the form of a(n) (immunostimulatory) CpG nucleic acid, in particular
CpG-RNA or CpG-DNA, which preferably induces an innate immune response. A CpG-RNA
or CpG-DNA used according to the invention can be a single-stranded CpG-DNA (ss CpG-DNA),
a double-stranded CpG-DNA (dsDNA), a single-stranded CpG-RNA (ss CpG-RNA) or a double-stranded
CpG-RNA (ds CpG-RNA). The CpG nucleic acid used according to the invention is preferably
in the form of CpG-RNA, more preferably in the form of single-stranded CpG-RNA (ss
CpG-RNA). Also preferably, such CpG nucleic acids have a length as described above.
Preferably, the CpG motifs are unmethylated.
[0149] Furthermore, an adjuvant nucleic acid, as used herein, can be an immunostimulatory
RNA (isRNA), which preferably elicits an innate immune response. Preferably, the immunostimulatory
RNA may be a single-stranded, a double-stranded or a partially double-stranded RNA,
more preferably a single-stranded RNA, and/or a circular or linear RNA, more preferably
a linear RNA. More preferably, the immunostimulatory RNA may be a (linear) single-stranded
RNA. Even more preferably, the immunostimulatory RNA may be a (long) (linear) (single-stranded)
non-coding RNA. In this context it is particular preferred that the isRNA carries
a triphosphate at its 5'-end which is the case for
in vitro transcribed RNA. An immunostimulatory RNA may also occur as a short RNA oligonucleotide
as defined herein. An immunostimulatory RNA as used herein may furthermore be selected
from any class of RNA molecules, found in nature or being prepared synthetically,
and which can induce an innate immune response and may support an adaptive immune
response induced by an antigen.
[0150] In case the inventive combination vaccine comprises an antigen-providing RNA and
additionally an adjuvant nucleic acid, the immune response that is evoked by administration
of such a vaccine comprises activation of both parts of the immune system, the adaptive
immune system as well as the innate immune system.
[0151] A substantial factor for a suitable adaptive immune response is the stimulation of
different T cell sub-populations. T-lymphocytes are typically divided into two sub-populations,
the T-helper 1 cells, in the following Th1-cells, and the T-helper 2 cells, in the
following Th2-cells, with which the immune system is capable of destroying intracellular
and extracellular pathogens (e.g. antigens). Thereby Th1-cells are responsible for
intracellular pathogen destruction by assisting the cellular immune response by activation
of macrophages and cytotoxic T cells. Th2-cells, on the other hand, are mainly for
extracellular pathogen-elimination and promote the humoral immune response by stimulation
of B-cells for conversion into plasma cells and by formation of antibodies (e.g. against
antigens). The two T-helper cell populations differ in the pattern of the effector
proteins (cytokines) produced by them.
[0152] The Th1-cell/Th2-cell ratio is of great importance in the induction and maintenance
of an adaptive immune response. In connection with the present invention, the Th1-cell/Th2-cell
ratio of the (adaptive) immune response is preferably shifted in the direction towards
the cellular response (Th1 response) and a cellular immune response is thereby induced.
Stimulation of this response of the adaptive immune system is mainly provoked by the
translation of the antigen-providing RNA and the resulting presence of the peptide
or protein antigens within the organism.
[0153] The innate immune system which may support such an adaptive immune response may be
activated by ligands of Toll-like receptors (TLRs). TLRs are a family of highly conserved
pattern recognition receptor (PRR) polypeptides that recognize pathogen-associated
molecular patterns (PAMPs) and play a critical role in innate immunity in mammals.
Currently at least thirteen family members, designated TLR1 - TLR13 (Toll-like receptors:
TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10, TLR11, TLR12 or TLR13),
have been identified. Furthermore, a number of specific TLR ligands have been identified.
It was e.g. found that unmethylated bacterial DNA and synthetic analogs thereof (CpG
DNA) are ligands for TLR9 (
Hemmi H et al. (2000) Nature 408:740-5;
Bauer S et al. (2001) Proc Natl. Acad. Sci. USA 98, 9237-42). Furthermore, it has been reported that ligands for certain TLRs include certain
nucleic acid molecules and that certain types of RNA are immunostimulatory in a sequence-independent
or sequence-dependent manner, wherein these various immunostimulatory RNAs may e.g.
stimulate TLR3, TLR7, or TLR8, or intracellular receptors such as RIG-I, MDA-5, etc.
[0154] In the context of the invention, the activation of the innate immune system can be
provided by the adjuvant of the inventive combination vaccine. Preferably, an adjuvant
nucleic acid, preferably an immunostimulatory RNA (isRNA), as used herein, may comprise
any RNA sequence known to be immunostimulatory, including, e.g., RNA sequences representing
and/or encoding ligands of TLRs, preferably selected from human family members TLR1
- TLR10 or murine family members TLR1 - TLR13, more preferably selected from (human)
family members TLR1 - TLR10, even more preferably from TLR7 and TLR8, ligands for
intracellular receptors for RNA (such as RIG-I or MDA-5, etc.) (see e.g.
Meylan, E., Tschopp, J. (2006). Toll-like receptors and RNA helicases: two parallel
ways to trigger antiviral responses. Mol. Cell 22, 561-569), or any other immunostimulatory RNA sequence. Furthermore, (classes of) immunostimulatory
RNA molecules, used as a further compound of the inventive combination vaccine, may
include any other RNA capable of eliciting an innate immune response. E.g., such an
immunostimulatory RNA may include ribosomal RNA (rRNA), transfer RNA (tRNA), messenger
RNA (mRNA), and viral RNA (vRNA). Such an immunostimulatory RNA may comprise a length
of 1000 to 5000, of 500 to 5000, of 5 to 5000, or of 5 to 1000, 5 to 500, 5 to 250,
of 5 to 100, of 5 to 50 or of 5 to 30 nucleotides.
[0155] According to a particularly preferred embodiment, an adjuvant nucleic acid sequence,
particularly an isRNA, as used herein, may consist of or comprise a nucleic acid of
formula (VII) or (VIII):
G
lX
mG
n , (formula (VII))
wherein:
- G
- is guanosine, uracil or an analogue of guanosine or uracil;
- X
- is guanosine, uracil, adenosine, thymidine, cytosine or an analogue of the above-mentioned
nucleotides;
- I
- is an integer from 1 to 40,
wherein
when I = 1 G is guanosine or an analogue thereof,
when I > 1 at least 50% of the nucleotides are guanosine or an analogue thereof;
- m
- is an integer and is at least 3;
wherein
when m = 3 X is uracil or an analogue thereof,
when m > 3 at least 3 successive uracils or analogues of uracil occur;
- n
- is an integer from 1 to 40,
wherein
when n = 1 G is guanosine or an analogue thereof,
when n > 1 at least 50% of the nucleotides are guanosine or an analogue thereof.
C
lX
mC
n , (formula (VIII))
wherein:
- C
- is cytosine, uracil or an analogue of cytosine or uracil;
- X
- is guanosine, uracil, adenosine, thymidine, cytosine or an analogue of the above-mentioned
nucleotides;
- I
- is an integer from 1 to 40,
wherein
when I = 1 C is cytosine or an analogue thereof,
when I > 1 at least 50% of the nucleotides are cytosine or an analogue thereof;
- m
- is an integer and is at least 3;
wherein
when m = 3 X is uracil or an analogue thereof,
when m > 3 at least 3 successive uracils or analogues of uracil occur;
- n
- is an integer from 1 to 40,
wherein
when n = 1 C is cytosine or an analogue thereof,
when n > 1 at least 50% of the nucleotides are cytosine or an analogue thereof.
[0156] The nucleic acids of formula (VII) or (VIII), which may be used as an adjuvant nucleic
acid sequence, particularly an isRNA, may be relatively short nucleic acid molecules
with a typical length of approximately from 5 to 100 (but may also be longer than
100 nucleotides for specific embodiments, e.g. up to 200 nucleotides), from 5 to 90
or from 5 to 80 nucleotides, preferably a length of approximately from 5 to 70, more
preferably a length of approximately from 8 to 60 and, more preferably a length of
approximately from 15 to 60 nucleotides, more preferably from 20 to 60, most preferably
from 30 to 60 nucleotides. If the nucleic acid of formula (VII) or (VIII) has a maximum
length of e.g. 100 nucleotides, m will typically be <=98. The number of nucleotides
G in the nucleic acid of formula (I) is determined by I or n. I and n, independently
of one another, are each an integer from 1 to 40, wherein when I or n = 1 G is guanosine
or an analogue thereof, and when I or n > 1 at least 50% of the nucleotides are guanosine
or an analogue thereof. For example, without implying any limitation, when I or n
= 4 Gi or G
n can be, for example, a GUGU, GGUU, UGUG, UUGG, GUUG, GGGU, GGUG, GUGG, UGGG or GGGG,
etc.; when I or n = 5 G
l or G
n can be, for example, a GGGUU, GGUGU, GUGGU, UGGGU, UGGUG, UGUGG, UUGGG, GUGUG, GGGGU,
GGGUG, GGUGG, GUGGG, UGGGG, or GGGGG, etc.; etc. A nucleotide adjacent to X
m in the nucleic acid of formula (VII) according to the invention is preferably not
a uracil. Similarly, the number of nucleotides C in the nucleic acid of formula (VIII)
according to the invention is determined by I or n. I and n, independently of one
another, are each an integer from 1 to 40, wherein when I or n = 1 C is cytosine or
an analogue thereof, and when I or n > 1 at least 50% of the nucleotides are cytosine
or an analogue thereof. For example, without implying any limitation, when I or n
= 4, C
l or C
n can be, for example, a CUCU, CCUU, UCUC, UUCC, CUUC, CCCU, CCUC, CUCC, UCCC or CCCC,
etc.; when l or n = 5 C
l or C
n can be, for example, a CCCUU, CCUCU, CUCCU, UCCCU, UCCUC, UCUCC, UUCCC, CUCUC, CCCCU,
CCCUC, CCUCC, CUCCC, UCCCC, or CCCCC, etc.; etc. A nucleotide adjacent to X
m in the nucleic acid of formula (VIII) according to the invention is preferably not
a uracil. Preferably, for formula (VII), when I or n > 1, at least 60%, 70%, 80%,
90% or even 100% of the nucleotides are guanosine or an analogue thereof, as defined
above. The remaining nucleotides to 100% (when guanosine constitutes less than 100%
of the nucleotides) in the flanking sequences G
1 and/or G
n are uracil or an analogue thereof, as defined hereinbefore. Also preferably, I and
n, independently of one another, are each an integer from 2 to 30, more preferably
an integer from 2 to 20 and yet more preferably an integer from 2 to 15. The lower
limit of I or n can be varied if necessary and is at least 1, preferably at least
2, more preferably at least 3, 4, 5, 6, 7, 8, 9 or 10. This definition applies correspondingly
to formula (VIII).
[0157] According to a further particularly preferred embodiment, an immunostimulatory nucleic
acid sequence, particularly an isRNA, as used herein, may consist of or comprise a
nucleic acid of formula (IX) or (X):
(N
uG
lX
mG
nN
v)
a, (formula (IX))
wherein:
- G
- is guanosine (guanine), uridine (uracil) or an analogue of guanosine (guanine) or
uridine (uracil), preferably guanosine (guanine) or an analogue thereof;
- X
- is guanosine (guanine), uridine (uracil), adenosine (adenine), thymidine (thymine),
cytidine (cytosine), or an analogue of these nucleotides (nucleosides), preferably
uridine (uracil) or an analogue thereof;
- N
- is a nucleic acid sequence having a length of about 4 to 50, preferably of about 4
to 40, more preferably of about 4 to 30 or 4 to 20 nucleic acids, each N independently
being selected from guanosine (guanine), uridine (uracil), adenosine (adenine), thymidine
(thymine), cytidine (cytosine) or an analogue of these nucleotides (nucleosides);
- a
- is an integer from 1 to 20, preferably from 1 to 15, most preferably from 1 to 10;
- I
- is an integer from 1 to 40,
wherein
when I = 1, G is guanosine (guanine) or an analogue thereof,
when I > 1, at least 50% of these nucleotides (nucleosides) are guanosine (guanine)
or an analogue thereof;
- m
- is an integer and is at least 3;
wherein
when m = 3, X is uridine (uracil) or an analogue thereof, and
when m > 3, at least 3 successive uridines (uracils) or analogues of uridine (uracil)
occur;
- n
- is an integer from 1 to 40,
wherein
when n = 1, G is guanosine (guanine) or an analogue thereof,
when n > 1, at least 50% of these nucleotides (nucleosides) are guanosine (guanine)
or an analogue thereof;
- u, v
- may be independently from each other an integer from 0 to 50,
preferably wherein when u = 0, v ≥ 1, or
when v = 0, u ≥ 1;
wherein the nucleic acid molecule of formula (IX) has a length of at least 50 nucleotides,
preferably of at least 100 nucleotides, more preferably of at least 150 nucleotides,
even more preferably of at least 200 nucleotides and most preferably of at least 250
nucleotides.
(N
uC
lX
mC
nN
v)
a (formula (X))
wherein:
- C
- is cytidine (cytosine), uridine (uracil) or an analogue of cytidine (cytosine) or
uridine (uracil), preferably cytidine (cytosine) or an analogue thereof;
- X
- is guanosine (guanine), uridine (uracil), adenosine (adenine), thymidine (thymine),
cytidine (cytosine) or an analogue of the above-mentioned nucleotides (nucleosides),
preferably uridine (uracil) or an analogue thereof;
- N
- is each a nucleic acid sequence having independent from each other a length of about
4 to 50, preferably of about 4 to 40, more preferably of about 4 to 30 or 4 to 20
nucleic acids, each N independently being selected from guanosine (guanine), uridine
(uracil), adenosine (adenine), thymidine (thymine), cytidine (cytosine) or an analogue
of these nucleotides (nucleosides);
- a
- is an integer from 1 to 20, preferably from 1 to 15, most preferably from 1 to 10;
- I
- is an integer from 1 to 40,
wherein
when l = 1, C is cytidine (cytosine) or an analogue thereof,
when I > 1, at least 50% of these nucleotides (nucleosides) are cytidine (cytosine)
or an analogue thereof;
- m
- is an integer and is at least 3;
wherein
when m = 3, X is uridine (uracil) or an analogue thereof,
when m > 3, at least 3 successive uridines (uracils) or analogues of uridine (uracil)
occur;
- n
- is an integer from 1 to 40,
wherein
when n = 1, C is cytidine (cytosine) or an analogue thereof,
when n > 1, at least 50% of these nucleotides (nucleosides) are cytidine (cytosine)
or an analogue thereof.
- u, v
- may be independently from each other an integer from 0 to 50,
preferably wherein when u = 0, v ≥ 1, or
when v = 0, u ≥ 1;
wherein the nucleic acid molecule of formula (X) according to the invention has a
length of at least 50 nucleotides, preferably of at least 100 nucleotides, more preferably
of at least 150 nucleotides, even more preferably of at least 200 nucleotides and
most preferably of at least 250 nucleotides.
[0158] Any of the definitions given above in formulae (VII) and (VIII), e.g. for elements
N (i.e. N
u and N
v) and X (X
m), particularly the core structure as defined above, as well as for integers a, l,
m, n, u and v, similarly apply to elements of formula (IX) and (X) correspondingly.
The definition of bordering elements N
u and N
v in formula (X) is identical to the definitions given above for N
u and N
v in formula (IX).
[0159] Finally, the adjuvant, which may be used together with the antigen-providing RNA
in the inventive combination vaccine, is preferably prepared according to a first
step by complexing the immunostimulatory RNA (isRNA) with a cationic or polycationic
compound and/or with a polymeric carrier, preferably as defined herein, in a specific
ratio to form a stable complex. In this context, it is highly preferable, that no
free cationic or polycationic compound or polymeric carrier or only a negligibly small
amount thereof remains in the adjuvant after complexing the isRNA. Accordingly, the
ratio of the isRNA and the cationic or polycationic compound and/or the polymeric
carrier in the adjuvant is typically selected in a range that the isRNA is entirely
complexed and no free cationic or polycationic compound or polymeric carrier or only
a negligibly small amount thereof remains in the composition.
[0160] Preferably the ratio of the adjuvant, i.e. the ratio of the isRNA to the cationic
or polycationic compound and/or the polymeric carrier, preferably as defined herein,
is selected from a range of about 6:1 (w/w) to about 0,25:1 (w/w), more preferably
from about 5:1 (w/w) to about 0,5:1 (w/w), even more preferably of about 4:1 (w/w)
to about 1:1 (w/w) or of about 3:1 (w/w) to about 1:1 (w/w), and most preferably a
ratio of about 3:1 (w/w) to about 2:1 (w/w). Alternatively, the ratio of the isRNA
to the cationic or polycationic compound and/or the polymeric carrier, preferably
as defined herein, in the adjuvant, may also be calculated on the basis of the nitrogen/phosphate
ratio (N/P-ratio) of the entire complex of the adjuvant. In the context of the present
invention, an N/P-ratio is preferably in the range of about 0.1 - 10, preferably in
a range of about 0.3-4 and most preferably in a range of about 0.5-2 or 0.7-2 regarding
the ratio of isRNA: cationic or polycationic compound and/or polymeric carrier, preferably
as defined herein, in the complex, and most preferably in a range of about 0.7-1,5,
0.7-1 or 0.5-1, and even most preferably in a range of about 0.3-0.9 or 0.5-0.9.,
preferably provided the cationic or polycationic compound in the complex is a cationic
or polycationic cationic or polycationic protein or peptide and/or the polymeric carrier
is as defined above.
[0161] According to the above, in a further preferred embodiment of the invention, the inventive
combination vaccine is formulated to comprise
- a) said at least one RNA; preferably in form of a mono-, bi- or multicistronic RNA,
optionally being stabilized, optionally being optimized for translation and/or optionally
being complexed with a cationic or polycationic compound or a polymeric carrier;
- b) optionally an adjuvant component, comprising or consisting of said at least one
RNA and/or at least one adjuvant nucleic acid, complexed with a cationic or polycationic
compound and/or with a polymeric carrier, and
- c) optionally a pharmaceutically acceptable carrier.
[0162] In this context it is particularly preferred that the optionally comprised adjuvant
component comprises the same RNA as comprised in the inventive combination vaccine
as antigen-providing RNA e.g. mRNA coding for a F protein of viruses of the
Paramyxoviridae or fragments, variants or derivatives thereof, or coding for a HA protein of viruses
of the
Orthomyxoviridae or fragments, variants or derivatives thereof.
[0163] Despite, the inventive combination vaccine may comprise further components for facilitating
administration and uptake of the vaccine. Such further components may be an appropriate
carrier or vehicle, additional adjuvants for supporting any immune response, antibacterial
and/or antiviral agents.
[0164] Accordingly, in a further embodiment, the inventive combination vaccine furthermore
comprises a pharmaceutically acceptable carrier and/or vehicle.
[0165] Such a pharmaceutically acceptable carrier typically includes the liquid or non-liquid
basis of a composition comprising the components of the combination vaccine. If the
composition is provided in liquid form, the carrier will typically be pyrogen-free
water; isotonic saline or buffered (aqueous) solutions, e.g. phosphate, citrate etc.
buffered solutions. The injection buffer may be hypertonic, isotonic or hypotonic
with reference to the specific reference medium, i.e. the buffer may have a higher,
identical or lower salt content with reference to the specific reference medium, wherein
preferably such concentrations of the afore mentioned salts may be used, which do
not lead to damage of cells due to osmosis or other concentration effects. Reference
media are e.g. liquids occurring in "
in vivo" methods, such as blood, lymph, cytosolic liquids, or other body liquids, or e.g.
liquids, which may be used as reference media in "
in vitro" methods, such as common buffers or liquids. Such common buffers or liquids are known
to a skilled person. Ringer-Lactate solution is particularly preferred as a liquid
basis.
[0166] However, one or more compatible solid or liquid fillers or diluents or encapsulating
compounds, which are suitable for administration to a patient to be treated, may be
used as well for the vaccine according to the invention. The term "compatible" as
used here means that these constituents of the combination vaccine are capable of
being mixed with the components of the combination vaccine in such a manner that no
interaction occurs which would substantially reduce the pharmaceutical effectiveness
of the combination vaccine under typical use conditions.
[0167] Furthermore, the inventive combination vaccine may comprise one or more additional
adjuvants which are suitable to initiate or increase an immune response of the innate
immune system, i.e. a non-specific immune response, particularly by binding to pathogen-associated
molecular patterns (PAMPs). With other words, when administered, the vaccine preferably
elicits an innate immune response due to the adjuvant, optionally contained therein.
Preferably, such an adjuvant may be selected from an adjuvant known to a skilled person
and suitable for the present case, i.e. supporting the induction of an innate immune
response in a mammal, e.g. an adjuvant protein as defined above or an adjuvant as
defined in the following. According to one embodiment such an adjuvant may be selected
from an adjuvant as defined above.
[0168] Also such an adjuvant may be selected from any adjuvant known to a skilled person
and suitable for the present case, i.e. supporting the induction of an innate immune
response in a mammal and/or suitable for depot and delivery of the components of the
combination vaccine. Preferred as adjuvants suitable for depot and delivery are cationic
or polycationic compounds as defined above. Likewise, the adjuvant may be selected
from the group consisting of, e.g., cationic or polycationic compounds as defined
above, from chitosan, TDM, MDP, muramyl dipeptide, pluronics, alum solution, aluminium
hydroxide, ADJUMERTM (polyphosphazene); aluminium phosphate gel; glucans from algae;
algammulin; aluminium hydroxide gel (alum); highly protein-adsorbing aluminium hydroxide
gel; low viscosity aluminium hydroxide gel; AF or SPT (emulsion of squalane (5%),
Tween 80 (0.2%), Pluronic L121 (1.25%), phosphate-buffered saline, pH 7.4); AVRIDINETM
(propanediamine); BAY R1005TM ((N-(2-deoxy-2-L-leucylaminob- D-glucopyranosyl)-N-octadecyl-dodecanoyl-amide
hydroacetate); CALCITRIOLTM (1-alpha,25-dihydroxy-vitamin D3); calcium phosphate gel;
CAPTM (calcium phosphate nanoparticles); cholera holotoxin, cholera-toxin-A1-protein-A-D-fragment
fusion protein, sub-unit B of the cholera toxin; CRL 1005 (block copolymer P1205);
cytokine-containing liposomes; DDA (dimethyldioctadecylammonium bromide); DHEA (dehydroepiandrosterone);
DMPC (dimyristoylphosphatidylcholine); DMPG (dimyristoylphosphatidylglycerol); DOC/alum
complex (deoxycholic acid sodium salt); Freund's complete adjuvant; Freund's incomplete
adjuvant; gamma inulin; Gerbu adjuvant (mixture of: i) N-acetylglucosaminyl-(P1-4)-N-acetylmuramyl-L-alanyl-D35
glutamine (GMDP), ii) dimethyldioctadecylammonium chloride (DDA), iii) zinc-L-proline
salt complex (ZnPro-8); GM-CSF); GMDP (N-acetylglucosaminyl-(b1-4)-N-acetylmuramyl-L47
alanyl-D-isoglutamine); imiquimod (1-(2-methypropyl)-1H-imidazo[4,5-c]quinoline-4-amine);
ImmTher
™ (N-acetylglucosaminyl-N-acetylmuramyl-L-Ala-D-isoGlu-L-Ala-glycerol dipalmitate);
DRVs (immunoliposomes prepared from dehydration-rehydration vesicles); interferongamma;
interleukin-1beta; interleukin-2; interleukin-7; interleukin-12; ISCOMSTM; ISCOPREP
7.0.3. TM; liposomes; LOXORIBINETM (7-allyl-8-oxoguanosine); LT 5 oral adjuvant (
E.coli labile enterotoxin-protoxin); microspheres and microparticles of any composition;
MF59TM; (squalenewater emulsion); MONTANIDE ISA 51TM (purified incomplete Freund's
adjuvant); MONTANIDE ISA 720TM (metabolisable oil adjuvant); MPLTM (3-Q-desacyl-4'-monophosphoryl
lipid A); MTP-PE and MTP-PE liposomes ((N-acetyl-L-alanyl-D-isoglutaminyl-L-alanine-2-(1,2-dipalmitoyl-sn-glycero-3-(hydroxyphosphoryloxy))-ethylamide,
monosodium salt); MURAMETIDETM (Nac-Mur-L-Ala-D-Gln-OCH3); MURAPALMITINETM and DMURAPALMITINETM
(Nac-Mur-L-Thr-D-isoGln-sn-glyceroldipalmitoyl); NAGO (neuraminidase- galactose oxidase);
nanospheres or nanoparticles of any composition; NISVs (non-ionic surfactant vesicles);
PLEURANTM (β - glucan); PLGA, PGA and PLA (homo- and co-polymers of lactic acid and
glycolic acid; microspheres/nanospheres); PLURONIC L121TM; PMMA (polymethylmethacrylate);
PODDSTM (proteinoid microspheres); polyethylene carbamate derivatives; poly-rA: poly-rU
(polyadenylic acid-polyuridylic acid complex); polysorbate 80 (Tween 80); protein
cochleates (Avanti Polar Lipids, Inc., Alabaster, AL); STIMULONTM (QS-21); Quil-A
(Quil-A saponin); S-28463 (4-amino-otec-dimethyl-2-ethoxymethyl-1H-imidazo[4,5-c]quinoline-1-ethanol);
SAF-1TM ("Syntex adjuvant formulation"); Sendai proteoliposomes and Sendai containing
lipid matrices; Span-85 (sorbitan trioleate); Specol (emulsion of Marcol 52, Span
85 and Tween 85); squalene or Robane
® (2,6,10,15,19,23-hexamethyltetracosan and 2,6,10,15,19,23-hexamethyl-2,6,10,14,18,22-tetracosahexane);
stearyltyrosine (octadecyltyrosine hydrochloride); Theramid
® (N-acetylglucosaminyl-N-acetylmuramyl-L-Ala-D-isoGlu-L-Aladipalmitoxypropylamide);
Theronyl-MDP (TermurtideTM or [thr 1]-MDP; N-acetylmuramyl-Lthreonyl-D-isoglutamine);
Ty particles (Ty-VLPs or virus-like particles); Walter-Reed liposomes (liposomes containing
lipid A adsorbed on aluminium hydroxide), and lipopeptides, including Pam3Cys, in
particular aluminium salts, such as Adju-phos, Alhydrogel, Rehydragel; emulsions,
including CFA, SAF, IFA, MF59, Provax, TiterMax, Montanide, Vaxfectin; copolymers,
including Optivax (CRL1005), L121, Poloaxmer4010), etc.; liposomes, including Stealth,
cochleates, including BIORAL; plant derived adjuvants, including QS21, Quil A, Iscomatrix,
ISCOM; adjuvants suitable for costimulation including Tomatine, biopolymers, including
PLG, PMM, Inulin, microbe derived adjuvants, including Romurtide, DETOX, MPL, CWS,
Mannose, CpG nucleic acid sequences, CpG7909, ligands of human TLR 1-10, ligands of
murine TLR 1-13, ISS-1018, 35 IC31, Imidazoquinolines, Ampligen, Ribi529, IMOxine,
IRIVs, VLPs, cholera toxin, heat-labile toxin, Pam3Cys, Flagellin, GPI anchor, LNFPIII/Lewis
X, antimicrobial peptides, UC-1V150, RSV fusion protein, cdiGMP; and adjuvants suitable
as antagonists including CGRP neuropeptide.
[0169] Particularly preferred, an adjuvant may be selected from adjuvants, which support
induction of a Th1-immune response or maturation of naive T-cells, such as GM-CSF,
IL-12, IFNg, any immunostimulatory nucleic acid as defined above, preferably an immunostimulatory
RNA, CpG DNA, etc.
[0170] In a further preferred embodiment it is also possible that the inventive combination
vaccine contains besides the antigen-providing RNA further components which are selected
from the group comprising: further antigens or further antigen-providing nucleic acids;
a further immunotherapeutic agent; one or more auxiliary substances; or any further
compound, which is known to be immunostimulating due to its binding affinity (as ligands)
to human Toll-like receptors; and/or an adjuvant nucleic acid, preferably an immunostimulatory
RNA (isRNA).
[0171] A further component of the inventive combination vaccine may be an immunotherapeutic
agent that can be selected from immunoglobulins, preferably IgGs, monoclonal or polyclonal
antibodies, polyclonal serum or sera, etc, most preferably immunoglobulins directed
against a virus of the
Paramyxoviridae family e.g. palivizumab. Preferably, such a further immunotherapeutic agent may be
provided as a peptide/protein or may be encoded by a nucleic acid, preferably by a
DNA or an RNA, more preferably an mRNA. Such an immunotherapeutic agent allows providing
passive vaccination additional to active vaccination triggered by the RNA encoded
antigens of the inventive combination vaccine.
[0172] The inventive combination vaccine can additionally contain one or more auxiliary
substances in order to increase its immunogenicity or immunostimulatory capacity,
if desired. A synergistic action of the components of the inventive combination vaccine
and of an auxiliary substance, which may be optionally contained in the vaccine, is
preferably achieved thereby. Depending on the various types of auxiliary substances,
various mechanisms can come into consideration in this respect. For example, compounds
that permit the maturation of dendritic cells (DCs), for example lipopolysaccharides,
TNF-alpha or CD40 ligand, form a first class of suitable auxiliary substances. In
general, it is possible to use as auxiliary substance any agent that influences the
immune system in the manner of a "danger signal" (LPS, GP96, etc.) or cytokines, such
as GM-CSF, which allow an immune response to be enhanced and/or influenced in a targeted
manner. Particularly preferred auxiliary substances are cytokines, such as monokines,
lymphokines, interleukins or chemokines, that further promote the innate immune response,
such as IL-1, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12, IL-13,
IL-14, IL-15, IL-16, IL-17, IL-18, IL-19, IL-20, IL-21, IL-22, IL-23, IL-24, IL-25,
IL-26, IL-27, IL-28, IL-29, IL-30, IL-31, IL-32, IL-33, IFN-alpha, IFN-beta, IFN-gamma,
GM-CSF, G-CSF, M-CSF, LT-beta or TNF-alpha, growth factors, such as hGH.
[0173] The inventive combination vaccine can also additionally contain any further compound,
which is known to be immunostimulating due to its binding affinity (as ligands) to
human Toll-like receptors TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10,
or due to its binding affinity (as ligands) to murine Toll-like receptors TLR1, TLR2,
TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10, TLR11, TLR12 or TLR13, a ligand of
a NOD-like receptor, or a ligand of a RIG-I like receptor. In this context the inventive
combination vaccine may also additionally contain an adjuvant nucleic acid, preferably
an immunostimulatory RNA (isRNA), as defined above.
[0174] Accordingly, in another preferred embodiment, the inventive combination vaccine furthermore
comprises at least one adjuvant, an auxiliary substance selected from lipopolysaccharides,
TNF-alpha, CD40 ligand, or cytokines, monokines, lymphokines, interleukins or chemokines,
IL-1, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12, IL-13, IL-14,
IL-15, IL-16, IL-17, IL-18, IL-19, IL-20, IL-21, IL-22, IL-23, IL-24, IL-25, IL-26,
IL-27, IL-28, IL-29, IL-30, IL-31, IL-32, IL-33, IFN-alpha, IFN-beta, IFN-gamma, GM-CSF,
G-CSF, M-CSF, LT-beta, TNF-alpha, growth factors, and hGH, a ligand of human Toll-like
receptor TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10, a ligand of
murine Toll-like receptor TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10,
TLR11, TLR12 or TLR13, a ligand of a NOD-like receptor, a ligand of a RIG-I like receptor,
an immunostimulatory nucleic acid, an immunostimulatory RNA (isRNA), a CpG-DNA, an
antibacterial agent, or an anti-viral agent.
[0175] In this context, antigens additionally included in the inventive combination vaccine
are typically substances such as cells, proteins, peptides, nucleic acids or other
bio- or macromolecules or fragments thereof. More preferably, antigens may be proteins
and peptides or fragments thereof, such as epitopes of those proteins or peptides,
preferably having 5 to 15, more preferably 6 to 9, amino acids. Particularly, said
proteins, peptides or epitopes may be derived from Hemagglutinin (HA)-proteins of
viruses of the
Orthomyxoviridae or may be derived from Fusion (F) proteins of viruses of the
Paramyxoviridae. Further, antigens may also comprise any other biomolecule, e.g., lipids, carbohydrates,
etc. Preferably, the antigen is a protein or (poly-) peptide antigen, a nucleic acid,
a nucleic acid encoding a protein or (poly-) peptide antigen, a polysaccharide antigen,
a polysaccharide conjugate antigen, a lipid antigen, a glycolipid antigen, a carbohydrate
antigen, a bacterium, a cell (vaccine), or killed or attenuated viruses or bacteria.
Particularly preferred in this context is the addition of antigens of the virus family
Paramyxoviridae, particularly the addition of antigens comprising or coding for full-length or fragments,
variants or derivatives of: F- fusion protein, N -nucleocapsid protein, P - phosphoprotein,
M - matrix protein, SH - small hyrdophobic protein, G -glycoprotein, NS1 - non-structural
protein 1, NS2 - non-structural protein 2, M2-1 - elongation factor, M2-2 - transcription
regulation and/or L -large protein, or the addition of antigens of the virus family
Orthomyxoviridae, particularly the addition of antigens comprising or coding for full-length or fragments,
variants or derivatives of: HA - Hemagglutinin, NA - Neuraminidase, NP - Nucleoprotein,
M1 - matrix protein 1, M2 - matrix protein 2, NEP - nuclear export protein, PA - polymerase
acidic protein, PB1 - polymerase basic protein 1, PB2 - polymerase basic protein 2,
NS1 - non-structural protein 1, NS2 - non-structural protein 2 and/or NS3 - non-structural
protein 3.
[0176] The combination vaccine as defined according to the present invention may furthermore
comprise further additives or additional compounds. Further additives which may be
included in the combination vaccine are emulsifiers, such as, for example, Tween
®; wetting agents, such as, for example, sodium lauryl sulfate; colouring agents; taste-imparting
agents, pharmaceutical carriers; tablet-forming agents; stabilizers; antioxidants;
preservatives, RNase inhibitors and/or an anti-bacterial agent or an anti-viral agent.
[0177] In this context, any anti-bacterial agents known to one of skill in the art may be
used in combination with the components of the inventive combination vaccine as defined
herein. Non-limiting examples of anti-bacterial agents include Amikacin, Amoxicillin,
Amoxicillin-clavulanic acid, Amphothericin-B, Ampicillin, Ampicllin-sulbactam, Apramycin,
Azithromycin, Aztreonam, Bacitracin, Benzylpenicillin, Caspofungin, Cefaclor, Cefadroxil,
Cefalexin, Cefalothin, Cefazolin, Cefdinir, Cefepime, Cefixime, Cefmenoxime, Cefoperazone,
Cefoperazone-sulbactam, Cefotaxime, Cefoxitin, Cefbirome, Cefpodoxime, Cefpodoxime-clavulanic
acid, Cefpodoxime-sulbactam, Cefbrozil, Cefquinome, Ceftazidime, Ceftibutin, Ceftiofur,
Ceftobiprole, Ceftriaxon, Cefuroxime, Chloramphenicole, Florfenicole, Ciprofloxacin,
Clarithromycin, Clinafloxacin, Clindamycin, Cloxacillin, Colistin, Cotrimoxazol (Trimthoprim/sulphamethoxazole),
Dalbavancin, Dalfopristin/Quinopristin, Daptomycin, Dibekacin, Dicloxacillin, Doripenem,
Doxycycline, Enrofloxacin, Ertapenem, Erythromycin, Flucloxacillin, Fluconazol, Flucytosin,
Fosfomycin, Fusidic acid, Garenoxacin, Gatifloxacin, Gemifloxacin, Gentamicin, Imipenem,
Itraconazole, Kanamycin, Ketoconazole, Levofloxacin, Lincomycin, Linezolid, Loracarbef,
Mecillnam (amdinocillin), Meropenem, Metronidazole, Meziocillin, Mezlocillin- sulbactam,
Minocycline, Moxifloxacin, Mupirocin, Nalidixic acid, Neomycin, Netilmicin, Nitrofurantoin,
Norfloxacin, Ofloxacin, Oxacillin, Pefloxacin, Penicillin V, Piperacillin, Piperacillin-sulbactam,
Piperacillin-tazobactam, Rifampicin, Roxythromycin, Sparfloxacin, Spectinomycin, Spiramycin,
Streptomycin, Sulbactam, Sulfamethoxazole, Teicoplanin, Telavancin, Telithromycin,
Temocillin, Tetracyklin, Ticarcillin, Ticarcillin-clavulanic acid, Tigecycline, Tobramycin,
Trimethoprim, Trovafloxacin, Tylosin, Vancomycin, Virginiamycin, and Voriconazole.
[0178] Anti-viral agents are preferably, e.g., nucleoside analogs (e.g., zidovudine, acyclovir,
gancyclovir, vidarabine, idoxuridine, trifluridine, and ribavirin), foscarnet, amantadine,
peramivir, rimantadine, saquinavir, indinavir, ritonavir, alpha-interferons and other
interferons, AZT, t-705, zanamivir (Relenza
®), and oseltamivir (Tamiflu
®). Other anti-viral agents include influenza virus vaccines, e.g., Fluarix
® (Glaxo SmithKline), FluMist
® (Medlmmune Vaccines), Fluvirin
® (Chiron Corporation), Flulaval
® (GlaxoSmithKline), Afluria
® (CSL Biotherapies Inc.), Agriflu
® (Novartis) or Fluzone
® (Aventis Pasteur).
[0179] The inventive combination vaccine typically comprises a "safe and effective amount"
of the components of the inventive combination vaccine as defined herein. As used
herein, a "safe and effective amount" preferably means an amount of the components,
preferably of the at least one RNA encoding at least one F protein or a part thereof
of the virus family
Paramyxoviridae, and at least one HA protein or a part thereof of the virus family
Orthomyxoviridae, that is sufficient to significantly induce a positive modification or prevention
of a disease or disorder as defined herein. At the same time, however, a "safe and
effective amount" is small enough to avoid serious side-effects and to permit a sensible
relationship between advantage and risk. The determination of these limits typically
lies within the scope of sensible medical judgment.
[0180] In a further aspect, the invention provides a combination vaccine for use in a method
of prophylactic and/or therapeutic treatment of infections caused by viruses of the
virus family
Paramyxoviridae and/or of the virus family
Orthomyxoviridae, particularly respiratory tract infections; preferably RSV infection, mumps, measles,
bronchitis, pneumonia, croup, distemper or rinderpest, and influenza. Consequently,
in a further aspect, the present invention is directed to the first medical use of
the inventive combination vaccine as defined herein as a medicament. Particularly,
the invention provides the use of a combination vaccine as defined above for the preparation
of a medicament. According to another aspect, the present invention is directed to
the second medical use of the combination vaccine, as defined herein, optionally in
form of a kit or kit of parts, for the treatment of diseases as defined herein. Particularly,
the combination vaccine to be used in a method as said above is a combination vaccine
formulated together with a pharmaceutically acceptable vehicle and an optionally additional
adjuvant and an optionally additional further component as defined above e.g. a further
antigen. The combination vaccine may alternatively be provided such that it is administered
for treating diseases as disclosed herein by two doses, each dose containing distinct
RNA species, e.g. the first dose containing at least one RNA encoding the F protein
(or fragments deivatives or variants thereof) and the second dose containing at least
one RNA encoding the HA protein (or fragments deivatives or variants thereof). By
that embodiment, both doses are administered in a staggered way, i.e. subsequently,
shortly one after the other, e.g. within less than 10 minutes, preferably less than
2 minutes, and at the same site of the body to achieve the same immunological effect
as for administration of one single composition containing both, e.g. the RNA encoding
the the HA protein and the RNA encoding the F protein..
[0181] In a preferred embodiment, the method comprises the
in vitro transfection of isolated cells. The cells used therefore are preferably human or
animal cells, particularly cells of a primary cell culture, which are then retransferred
to a human or animal. Prior to transfection, these cells are typically isolated from
the patient to be treated and cultivated.
[0182] In a further embodiment, it is preferred that the combination vaccine comprises one
or more RNAs encoding for the Fusion (F) protein or a fragment, variant or derivative
of the Fusion (F) protein derived from the virus family
Paramyxoviridae and for the Hemagglutinin (HA) protein or a fragment, variant or derivative of the
Hemagglutinin (HA) protein derived from the virus family
Orthomyxoviridae to be administered to an individual. In such a method, both antigenic functions of
the combination vaccine are provided by one composition and can be administered to
an individual e.g. by one single injection, preferably by parental administration.
[0183] Alternatively, of course administration can also occur orally, nasally, pulmonary,
by inhalation, topically, rectally, buccally, vaginally, or via an implanted reservoir.
The term parenteral as used herein includes subcutaneous, intravenous, intramuscular,
intra-articular, intra-synovial, intrasternal, intrathecal, intrahepatic, intralesional,
intracranial, transdermal, intradermal, intrapulmonal, intraperitoneal, intracardial,
intraarterial, and sublingual injection or infusion techniques.
[0184] According to a specific embodiment, the combination vaccine may be administered to
the patient as a single dose. In certain embodiments, the inventive combination vaccine
may be administered to a patient as a single dose followed by a second dose later
and optionally even a third, fourth (or more) dose subsequent thereto etc. In accordance
with this embodiment, booster inoculations with the inventive combination vaccine
may be administered to a patient at specific time intervals, preferably as defined
below, following the second (or third, fourth, etc.) inoculation. In certain embodiments,
such booster inoculations with the inventive combination vaccine may utilize an additional
compound or component as defined for the inventive combination vaccine as defined
herein.
[0185] The inventive combination vaccine, as defined herein, may be used for human and also
for veterinary medical purposes, preferably for human medical purposes. More preferably,
the inventive combination vaccine may be used for treating a mammal for diseases as
mentioned herein. In the context of the present invention, a mammal may be selected
from any mammal, preferably from a mammal, selected from the group comprising, e.g.,
goat, cattle, swine, dog, cat, donkey, monkey, ape, a rodent such as a mouse, hamster,
rabbit, and, in particular, human. Administration modes may be as defined herein.
[0186] Preferably, the method comprises the
in vitro transfection of isolated cells. Particularly, a method of treating an individual
with his own cells can be performed advantageously by transfection of isolated cells
with the inventive combination vaccine. The cells used therefore are preferably human
or animal cells, particularly cells of a primary cell culture, which are then retransferred
to a human or animal. Prior to transfection, these cells are typically isolated from
the patient to be treated and cultivated. The inventive combination vaccine may be
administered to the primary cell culture without further adjuvants or vehicles contained
optionally in a combination vaccine according to the invention. In a further embodiment,
the inventive combination vaccine is to be administered to an individual in a pharmaceutically
effective amount.
[0187] In a further aspect, the invention is directed to a kit comprising the components
of the combination vaccine according to the invention and optionally technical instructions
with information on the administration and dosage of the components of the combination
vaccine, wherein the combination vaccine contains one or more RNAs (for example mRNAs),
said RNAs encoding a first and for a second antigen, wherein the first antigen is
a Fusion (F) protein or a fragment, variant or derivative of a Fusion (F) protein
derived from the virus family
Paramyxoviridae and wherein the second antigen is a Hemagglutinin (HA) protein or a fragment, variant
or derivative of a Hemagglutinin (HA) protein derived from the virus family
Orthomyxoviridae.
[0188] Beside the components of the combination vaccine the kit may additionally contain
a pharmaceutically acceptable vehicle, an adjuvant and at least one further component
as defined herein, as well as means for administration and technical instructions.
The components of the combination vaccine and e.g. the adjuvant may be provided in
lyophilized form. In a preferred embodiment, prior to use of the kit for vaccination,
the provided vehicle is than added to the lyophilized components in a predetermined
amount as written e.g. in the provided technical instructions. By doing so the combination
vaccine, according to the above described aspects of the invention is provided that
can afterwards be used in a method as described above, also.
[0189] Taken together the invention provides in a certain aspect a combination vaccine.
The combination vaccine is for use in a method of prophylactic and/or therapeutic
treatment of infections caused by viruses of the virus family
Paramyxoviridae and/or of the virus family
Orthomyxoviridae, particularly respiratory tract infections, e.g. RSV infection, mumps, measles, bronchitis,
pneumonia, croup, distemper or rinderpest, and influenza. Accordingly, the invention
relates to a combination vaccine as defined herein for use in a method of prophylactic
and/or therapeutic treatment of infections caused by viruses of the virus family
Paramyxoviridae and/or of the virus family
Orthomyxoviridae, particularly respiratory tract infections, e.g. RSV infection, mumps, measles, bronchitis,
pneumonia, croup, distemper or rinderpest, and influenza. The target group for such
treatment preferably comprises infants, particularly pre-term infants (e.g. pre-term
neonates), children, the elderly (e.g. people more than 60 years of age, preferably
more than 65 years of age) and immunocompromised patients. Particularly, the invention
provides a combination vaccine to be used in a method of preventing or treating respiratory
tract infections, e.g. RSV infection, mumps, measles, bronchitis, pneumonia, croup,
distemper or rinderpest, and influenza by administering the combination vaccine to
pre-term infants, children, the elderly and immunocompromised patients, wherein the
combination vaccine provokes a first adaptive immune response directed against an
antigen that is similar or identical to the epitope of a Fusion (F) protein of
Paramyxoviridae, and a second immune response elicited by an antigen that is similar or identical
to the epitope of a Hemagglutinin (HA) protein of
Orthomyxoviridae. Furthermore vaccination with a combination vaccine according to the invention can
be supported by adjuvants. Such adjuvants may stimulate the innate immune system which
in turn supports the adaptive immune response.
[0190] In the following, various aspects of the present invention are illustrated by the
following items:
- 1. Composition comprising:
- a) an RNA, preferably mRNA, comprising or consisting of a nucleic acid sequence encoding
a protein or peptide, said protein or peptide comprising or consisting of:
- i) the amino acid sequence of a Fusion (F) protein of the virus family Paramyxoviriclae;
- ii) the amino acid sequence of a fragment of said Fusion (F) protein of the virus
family Paramyxoviridae, said fragment having a length of at least 5 amino acids; and/or
- iii) an amino acid sequence exhibiting a sequence identity of at least 80% to said
Fusion (F) protein of the virus family Paramyxoviridae of a) i) and/ or said fragment of a) ii);
and further comprising
- b) an RNA, preferably mRNA, comprising or consisting of a nucleic acid sequence encoding
a protein or peptide, said protein or peptide comprising or consisting of:
- i) the amino acid sequence of a Hemagglutinin (HA) protein of the virus family Orthomyxoviridae,
- ii) the amino acid sequence of a fragment of said Hemagglutinin (HA) protein of the
virus family Orthomyxoviridae, said fragment having a length of at least 5 amino acids and/or
- iii) an amino acid sequence exhibiting a sequence identity of at least 80% to said
Hemagglutinin (HA) protein of the virus family Orthomyxoviridae of b) i) and/ or said fragment of b) ii).
- 2. The composition according to item 1, wherein the Fusion (F) protein of the virus
family Paramyxoviridae is a Fusion (F) protein of a virus selected from the group of: Avulavirus, Ferlavirus,
Henipavirus, Morbillivirus, Respirovirus, Rubulavirus, TPMV-like viruses, Pneumovirus,
Metapneumovirus, Atlantic salmon paramyxovirus, Beilong virus, J virus, Mossman virus,
Nariva virus, Salem virus, and Pacific salmon paramyxovirus.
- 3. The composition according to item 2, wherein the Fusion (F) protein of the virus
family Paramyxoviridae is a Fusion (F) protein of a Pneumovirus.
- 4. The composition according to item 3, wherein the Pneumovirus is human respiratory
syncytial virus (RSV), preferably RSV Long or RSV A2.
- 5. The composition according to item 4, wherein the Fusion (F) protein of the virus
family Paramyxoviridae comprises the sequence of SEQ ID No. 1 or SEQ ID No. 2 (or P102A, I379V, and M447V
mutants of SEQ ID No. 2).
- 6. The composition according to any of the preceding items, wherein the Hemagglutinin
(HA) protein of the virus family Orthomyxoviridae is a Hemagglutinin (HA) protein of an Influenza virus, preferably selected from the
group consisting of: Influenza A (e.g. H1N1, H1 N2, H2N2, H3N1, H3N2, H3N8, H5N1,
H5N2, H5N3, H5N8, H5N9, H7N1, H7N2, H7N3, H7N4, H7N7, H9N1, H9N2, H10N7), Influenza
B, Influenza C, Isavirus (e.g. Infectious salmon anemia virus), Thogotovirus (e.g.
Dhori virus), Quaranfil virus, Johnston Atoll virus, and Lake Chad virus.
- 7. The composition according to any of the preceding items, wherein the Hemagglutinin
(HA) protein of the virus family Orthomyxoviridae comprises the sequence of SEQ ID No. 3.
- 8. The composition according to any of the preceding items, wherein the composition
comprises a combination selected from the group consisting of: RNA of a) i) and the
RNA of b) i), RNA of a) i) and the RNA of b) ii), RNA of a) i) and the RNA of b) iii),
RNA of a) ii) and the RNA of b) i), RNA of a) ii) and the RNA of b) ii), RNA of a)
ii) and the RNA of b) iii), RNA of a) iii) and the RNA of b) i), RNA of a) iii) and
the RNA of b) ii), and RNA of a) iii) and the RNA of b) iii); preferably wherein the
composition comprises the RNA of a) i) and the RNA of b) i).
- 9. The composition according to item 8, wherein the RNA of a) and the RNA of b) are
not the same nucleic acid molecule.
- 10. The composition according to item 8, wherein the RNA of a) and the RNA of b) are
the same nucleic acid molecule.
- 11. The composition according to item 10, wherein said same nucleic molecule encodes
the protein or peptide of a) i), a) ii) and/or a) iii); and the protein or peptide
of b) i), b) ii) and/or b) iii) in bi- or multicistronic manner.
- 12. The composition according to item 10, wherein said nucleic acid molecule does
not encode a fusion protein representing a combination of the amino acid sequence
of a Fusion (F) protein of the virus family Paramyxoviridae, or fragment thereof with an HA tag of the sequence YPYDVPDYA (SEQ ID No. 22).
- 13. The composition according any of the preceding items wherein the RNA of b) does
not encode a peptide consisting of and/or comprising an HA-tag of the sequence YPYDVPDYA
(SEQ ID No. 22).
- 14. The composition according to any of the preceding items, wherein the composition
comprises two or more different RNAs according to a), preferably encoding different
peptides comprising the amino acid sequence of different fragments of said Fusion
(F) protein of the virus family Paramyxoviridae, wherein most preferably the sequence of all encoded fragments aligned with each other
covers the full length of said Fusion (F) protein of the virus family Paramyxoviridae.
- 15. The composition according to any of the preceding items, wherein the composition
comprises two or more different RNAs according to b), preferably encoding different
peptides comprising the amino acid sequence of different fragments of said Hemagglutinin
(HA) protein of the virus family Orthomyxoviridae,, wherein most preferably the sequence of all encoded fragments aligned with each other
covers up to the full length of said Hemagglutinin (HA) protein of the virus family
Orthomyxoviridae.
- 16. The composition according to any of the preceding items, wherein said fragment
of said Fusion (F) protein of the virus family Paramyxoviridae, and/or said fragment of said Hemagglutinin (HA) protein of the virus family Orthomyxoviridae, selected independently of each other, has a length of at least 6 amino acids, preferably
at least 7 amino acids, more preferably at least 8 amino acids, even more preferably
at least 9 amino acids; even more preferably at least 10 amino acids; even more preferably
at least 11 amino acids; even more preferably at least 12 amino acids; even more preferably
at least 13 amino acids; even more preferably at least 14 amino acids; even more preferably
at least 15 amino acids; even more preferably at least 16 amino acids; even more preferably
at least 17 amino acids; even more preferably at least 18 amino acids; even more preferably
at least 19 amino acids; even more preferably at least 20 amino acids; even more preferably
at least 25 amino acids; even more preferably at least 30 amino acids; even more preferably
at least 35 amino acids; even more preferably at least 50 amino acids; or most preferably
at least 100 amino acids.
- 17. The composition according to any of the preceding items, wherein said fragment
of said Fusion (F) protein of the virus family Paramyxoviridae, and/or said fragment of said Hemagglutinin (HA) protein of the virus family Orthomyxoviridae, is selected independently of each other from the first, second, third or fourth quarter
of the amino acid sequence of said Fusion (F) protein of the virus family Paramyxoviridae and/or the amino acid sequence of said Hemagglutinin (HA) protein of the virus family
Orthomyxoviridae, respectively.
- 18. The composition according to any of the preceding items, wherein the sequence
identity of a) iii) and/or b) iii), selected independently of each other, is at least
85%, preferably at least 90%, even more preferably at least 92%; even more preferably
at least 92%; even more preferably at least 94%; even more preferably at least 95%;
even more preferably at least 96%; even more preferably at least 97%; even more preferably
at least 98%; most preferably at least 99%.
- 19. The composition according to any of the preceding items, with the proviso that
if the RNA of a) and the RNA of b) are the same nucleic acid molecule and the protein
or peptide of a) and peptide of b) encoded by said same nucleic acid are the same
protein or peptide, and said same protein or peptide comprises the sequence of SEQ
ID No. 22, then said same nucleic acid molecule encodes a protein or peptide comprising:
- I) an amino acid sequence of b i);
- II) an amino acid sequence of b) ii), said fragment having a length of at least 10
amino acids, preferably at least 11 amino acids, more preferably at least 12 amino
acids, more preferably at least 13 amino acids, more preferably at least 14 amino
acids, more preferably at least 15 amino acids, more preferably at least 16 amino
acids, more preferably at least 17 amino acids, more preferably at least 18 amino
acids, more preferably at least 19 amino acids, most preferably at least 20 amino
acids;
- III) an amino acid sequence exhibiting a sequence identity of at least 80% to an Hemagglutinin
(HA) protein of the virus family Orthomyxoviridae;
- IV) an amino acid sequence exhibiting a sequence identity of at least 80% to of a
fragment of an Hemagglutinin (HA) protein of the virus family Orthomyxoviridae, said fragment having a length of at least 12 amino acids; and/or
- V) said sequence of SEQ ID No. 22 is present in the protein or peptide in addition
to a further amino acid sequence according to bi), bii) or b iii), which further amino
acid sequence does not comprise SEQ ID No. 22.
- 20. The composition according to any of the preceding items, wherein the RNA of a)
and/or the RNA of b) are mRNA.
- 21. The composition according to any of the preceding items, wherein the RNA of a)
comprises or consists of a nucleic acid sequence selected from the group consisting
of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15, SEQ ID No. 16, SEQ ID No. 17, SEQ
ID No. 19 or SEQ ID No. 20, in particular selected from SEQ ID No. 19 or SEQ ID No.
20, in particular wherein the composition comprises at least two monocistronic RNAs,
wherein the composition is selected from the group: (a) at least one monocistronic
RNA according to SEQ ID No.: 13 and at least one monocistronic RNA according to SEQ
ID No.: 18 or SEQ ID No.: 21, (b) at least one monocistronic RNA according to SEQ
ID No.: 14 and at least one monocistronic RNA according to SEQ ID No.: 18 or according
to SEQ ID No.: 21, (c) at least one monocistronic RNA according to SEQ ID No.: 15
and at least one monocistronic RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
(d) at least one monocistronic RNA according to SEQ ID No.: 16 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21, (e) at least one monocistronic
RNA according to SEQ ID No.: 17 and at least one monocistronic RNA according to SEQ
ID No.: 18 or SEQ ID No.: 21, (f) at least one monocistronic RNA according to SEQ
ID No.: 19 and at least one monocistronic RNA according to SEQ ID No.: 18 or SEQ ID
No.: 21, and (g) at least one monocistronic RNA according to SEQ ID No.: 20 and at
least one monocistronic RNA according to SEQ ID No.: 18 or SEQ ID No.: 21, or functional
fragments, variants or derivatives of any of the above SEQ ID Nos.
- 22. The composition according to any of the preceding items, wherein the RNA of b)
comprises or consists of a nucleic acid sequence selected from the group consisting
of SEQ ID No: 18 and SEQ ID No. 21.
- 23. The composition according to any of items 20 to 22, wherein:
- i) the RNA of a) comprises or consists of the sequence of SEQ ID No. 19 and/or SEQ
ID No. 20; and
- ii) the RNA of b) comprises or consists of the sequence of SEQ ID No. 21.
- 24. The composition according to any of the preceding items, wherein the composition
comprises an RNA consisting of the sequence of SEQ ID No. 19 or SEQ ID No. 20; and
comprises an RNA consisting of the sequence of SEQ ID No. 21.
- 25. The composition according to any of the preceding items, wherein the RNA of a)
and/or the RNA of b) comprise one, two or more than two of the following structural
elements:
- i) a histone-stem-loop structure, preferably a histone-stem-loop in its 3' untranslated
region;
- ii) a 5'-Cap structure;
- iii) a poly(C) sequence;
- iv) a poly-A tail; and/or
- v) a polyadenylation signal.
- 26. The composition according to any of items 1 to 19, wherein the RNA of a) and/or
the RNA of b) are selfreplicating RNA, in particular RNA packaged in a replicon particle.
- 27. The composition according to any of items 20 to 26, wherein the mRNA of a) and/or
the mRNA of b) are stabilized RNA, preferably RNA stabilized by complete or partial
backbone modifications (e.g. over the full length of the sequence or only parts thereof),
complete or partial sugar modifications (e.g. over the full length of the sequence
or only parts thereof), complete or partial base modifications (e.g. over the full
length of the sequence or only parts thereof), and/or by complete or partial modification
of the G/C-content (e.g. over the full length of the sequence or only parts thereof).
- 28. The composition according to any of the preceding items, wherein the RNA of a)
and/or the RNA of b) are codon optimized, in particular for human codon usage.
- 29. The composition according to any of the preceding items, wherein the RNA of a)
and/or the RNA of b) are associated with or complexed with a cationic or polycationic
compound or a polymeric carrier, optionally in a weight ratio selected independently
of each other from a range of about 6:1 (w/w) to about 0.25:1 (w/w), more preferably
from about 5:1 (w/w) to about 0.5:1 (w/w), even more preferably of about 4:1 (w/w)
to about 1:1 (w:w) or of about 3:1 (w/w) to about 1:1 (w/w), and most preferably a
ration of about 3:1 (w/w) to about 2:1 (w/w) of nucleic to cationic or polycationic
compound and/or with a polymeric carrier; or optionally in a nitrogen/phosphate ratio
of nucleic to cationic or polycationic compound and/or polymeric carrier in the range
of about 0.1-10, preferably in a range of about 0.3-4 or 0.3-1, most preferably in
a range of about 0.5-1 or 0.7-1, and even most preferably in a range of about 0.3-0.9
or 0.5-0.9.
- 30. The composition according to any of the preceding items, wherein the RNA of a)
and/or the RNA of b) are associated or complexed with a cationic protein or peptide,
preferably protamine.
- 31. The composition according to any of the preceding items, wherein the composition
further comprises an adjuvant; preferably an adjuvant comprising or consisting of
an oligo- or a polynucleotide; more preferably an adjuvant comprising or consisting
of a RNA or a DNA; even more preferably an adjuvant comprising or consisting of a
RNA or a DNA, said RNA or DNA being complexed with a cationic or polycationic compound
and/or with a polymeric carrier; optionally in a weight ratio selected from a range
of about 6:1 (w/w) to about 0.25:1 (w/w), more preferably from about 5:1 (w/w) to
about 0.5:1 (w/w), even more preferably of about 4:1 (w/w) to about 1:1 (w:w) or of
about 3:1 (w/w) to about 1:1 (w/w), and most preferably a ration of about 3:1 (w/w)
to about 2:1 (w/w) of adjuvant component to cationic or polycationic compound and/or
with a polymeric carrier; or optionally in a nitrogen/phosphate ratio of the adjuvant
component to cationic or polycationic compound and/or polymeric carrier in the range
of about 0.1-10, preferably in a range of about 0.3-4 or 0.3-1, and most preferably
in a range of about 0.7-1 or 0.5-1, and even most preferably in a range of about 0.3-0.9
or 0.5-0.9.
- 32. The composition according to any of the preceding items, wherein the composition
further comprises an auxiliary substance selected from lipopolysaccharides, TNF-alpha,
CD40 ligand, or cytokines, monokines, lymphokines, interleukins or chemokines, IL-1,
IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-10, IL-12, IL-13, IL-14, IL-15,
IL-16, IL-17, IL-18, IL-19, IL-20, IL-21, IL-22, IL-23, IL-24, IL-25, IL-26, IL-27,
IL-28, IL-29, IL-30, IL-31, IL-32, IL-33, IFN-alpha, IFN-beta, IFN-gamma, GM-CSF,
G-CSF, M-CSF, LT-beta, TNF-alpha, growth factors, and hGH, a ligand of human Toll-like
receptor TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10, a ligand of
murine Toll-like receptor TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR8, TLR9, TLR10,
TLR11, TLR12 or TLR13, a ligand of a NOD-like receptor, a ligand of a RIG-I like receptor,
an immunostimulatory nucleic acid, an immunostimulatory RNA (isRNA), a CpG-DNA, an
antibacterial agent, or an anti-viral agent.
- 33. The composition according to any of the preceding items, wherein the composition
is a pharmaceutical composition optionally further comprising a pharmaceutically acceptable
carrier, excipient or diluent.
- 34. The composition according to item 33, wherein the composition is formulated for
parenteral, oral, nasal, pulmonary, topical, rectal, buccal, or vaginal administration
or for administration by inhalation or via an implanted reservoir.
- 35. The composition according to any of items 1 to 34 for use in a method of prophylactic
and/or therapeutic treatment of the human or animal body.
- 36. The composition according to any of items 1 to 34 for use in a method of prophylactic
and/or therapeutic treatment of infections caused by viruses of the virus family Paramyxoviridae and/or of the virus family Orthomyxoviridae, particularly respiratory tract infections; preferably RSV infection, mumps, measles,
bronchitis, pneumonia, croup, distemper or rinderpest, and/or influenza.
- 37. The composition according to item 35 or 36 for use as vaccine.
- 38. The composition according to any of items 35 to 37, wherein the method comprises
the in vitro transfection of isolated cells.
- 39. The composition according to any of items 35 to 38, wherein the individual to
be treated is selected from the group consisting of infants, particularly pre-term
neonates, children, the elderly and immunocompromised patients.
- 40. Kit comprising:
- a) an RNA, preferably mRNA, comprising or consisting of a nucleic acid sequence encoding
a protein or peptide, said protein or peptide comprising or consisting of:
- i) the amino acid sequence of a Fusion (F) protein of the virus family Paramyxoviridae;
- ii) the amino acid sequence of a fragment of said Fusion (F) protein of the virus
family Paramyxoviridae, said fragment having a length of at least 5 amino acids; and/or
- iii) an amino acid sequence exhibiting a sequence identity of at least 80% to said
Fusion (F) protein of the virus family Paramyxoviridae of a) i) and/ or said fragment of a) ii);
and further comprising
- b) an RNA, preferably mRNA, comprising or consisting of a nucleic acid sequence encoding
a protein or peptide, said protein or peptide comprising or consisting of:
- i) the amino acid sequence of a Hemagglutinin (HA) protein of the virus family Orthomyxoviridae,
- ii) the amino acid sequence of a fragment of said Hemagglutinin (HA) protein of the
virus family Orthomyxoviridae, said fragment having a length of at least 5 amino acids and/or
- iii) an amino acid sequence exhibiting a sequence identity of at least 80% to said
Hemagglutinin (HA) protein of the virus family Orthomyxoviridae of b) i) and/ or said fragment of b) ii).
- 41. The kit according to item 40, wherein the RNA of a) and the RNA of b) are as defined
in any of items 2 to 34.
- 42. The kit according to item 40 or 41 for use in a method of prophylactic and/or
therapeutic treatment of the human or animal body.
- 43. The kit according to any of items 40 to 42 for use in a method of prophylactic
and/or therapeutic treatment of infections caused by viruses of the virus family Paramyxoviridae and/or of the virus family Orthomyxoviridae, particularly respiratory tract infections; preferably RSV infection, mumps, measles,
bronchitis, pneumonia, croup, distemper or rinderpest, and/or influenza.
- 44. The kit according to item 40 or 41 for use as vaccine.
- 45. The kit according to any of items 40 to 44, wherein the method comprises the in vitro transfection of isolated cells.
- 46. The kit according to any of items 40 to 45, wherein the individual to be treated
is selected from the group consisting of infants, particularly pre-term neonates,
children, the elderly and immunocompromised patients.
- 47. Method of prophylactic and/or therapeutic treatment of infections caused by viruses
of the virus family Paramyxoviridae and/or of the virus family Orthomyxoviridae, particularly respiratory tract infections; preferably RSV infection, mumps, measles,
bronchitis, pneumonia, croup, distemper or rinderpest, and/or influenza, wherein the
method comprises administration of an effective amount of the composition according
to any of items 1 to 35, or kit according to any of items 41 to 42.
- 48. The method to item 47, wherein said composition or kit is used as vaccine.
- 49. The method according to item 47 or 48, wherein the method comprises the in vitro transfection of isolated cells.
- 50. The method according to any of items 47 to 49, wherein the individual to be treated
is selected from the group consisting of infants, particularly pre-term neonates,
children, the elderly and immunocompromised patients.
- 51. Nucleic acid comprising or consisting of a sequence selected from the group of:
SEQ ID No. 7, SEQ ID No. 8, SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, and SEQ ID
No: 12.
- 52. Nucleic acid comprising or consisting of a sequence selected from the group of:
SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15, SEQ ID No. 16, SEQ ID No. 17, and SEQ
ID No: 18.
- 53. Nucleic acid according to item 52, the nucleic acid comprising or consisting of
a sequence selected from the group of: SEQ ID No. 19, SEQ ID No. 20 and SEQ ID No.
21.
- 54. RNA, preferably mRNA, comprising or consisting of a nucleic acid sequence encoding
a protein or peptide, said protein or peptide comprising or consisting of:
- i) the amino acid sequence of a Fusion (F) protein of the virus family Paramyxoviridae;
- ii) the amino acid sequence of a fragment of said Fusion (F) protein of the virus
family Paramyxoviridae, said fragment having a length of at least 5 amino acids; and/or
- iii) an amino acid sequence exhibiting a sequence identity of at least 80% to said
Fusion (F) protein of the virus family Paramyxoviridae of a) i) and/ or said fragment of a) ii);
for use in a method according to any of items 47 to 50.
- 55. The RNA of item 54, wherein the RNA is as defined in any of items 2 to 5, 9 to
13, 16 to 21, or 25 to 32, in particular wherein the RNA comprises or consists of
a sequence selected from the group consisting of SEQ ID No. 13, SEQ ID No. 14, SEQ
ID No. 15, SEQ ID No. 16, SEQ ID No. 17, SEQ ID No. 19 and SEQ ID No. 20.
- 56. RNA, preferably mRNA, comprising or consisting of a nucleic acid sequence encoding
a protein or peptide, said protein or peptide comprising or consisting of:
- i) the amino acid sequence of a Hemagglutinin (HA) protein of the virus family Orthomyxoviridae,
- ii) the amino acid sequence of a fragment of said Hemagglutinin (HA) protein of the
virus family Orthomyxoviridae, said fragment having a length of at least 5 amino acids and/or
- iii) an amino acid sequence exhibiting a sequence identity of at least 80% to said
Hemagglutinin (HA) protein of the virus family Orthomyxoviridae of b) i) and/ or said fragment of b) ii);
for use in a method according to any of items 47 to 50.
- 57. The RNA of item 56, wherein the RNA is as defined in any of items 6 to 7, 9 to
13, 16 to 20, 22, or 25 to 32, in particular wherein the RNA comprises or consists
of a sequence selected from the group consisting of SEQ ID No: 18 or SEQ ID No. 21.
[0191] It is understood that the subject-matter of any of the above mentioned items may
be combined with or modified according to any of the possibilities (or any features
thereof) described in the instant description of the present invention.
[0192] Further, it is emphasized again that an HA-tag is preferably not used according to
the invention as fragment of said Hemagglutinin (HA) protein of the virus family
Orthomyxoviridae. RNA encoding a mere HA-tagged Fusion (F) proteins of the virus family
Paramyxoviridae, e.g. a Fusion (F) protein of the virus family
Paramyxoviridae linked (optionally via a short 1 to 10 amino acid peptide linker) to an HA tag -
or nucleic acids encoding the same - is not an preferred embodiment of composition
of the invention. However, there are several possibilities in which presence of an
HA-tag is possible. For example, if an HA tag sequence is present in such fusion protein,
the encoded fusion protein must preferably comprise as Hemagglutinin (HA) derived
portion (peptide b in item 1) aside of the HA tag preferably also other sequence elements
of an Hemagglutinin protein. For example, the Hemagglutinin (HA) derived portion (see
peptide b in item 1) may be longer than the real HA tag or may comprise elsewhere
in its sequence additional Hemagglutinin protein derived sequence elements of sufficient
length (e.g. sequence stretches of preferably 5 or more amino acids). An additional
HA tag, i.e. in addition to another non-HA sequence qualifying as Hemagglutinin (HA)
derived portion (see peptide b in item 1), is also possible. Likewise, the fusion
of fragments of an Fusion (F) protein - instead of the full length F>Uion (F) protein
- with an HA tag is not excluded from the scope of the present invention. A fusion
protein of an Fusion (F) protein as defined herein with an HA tag is furthermore particularly
acceptable, when the composition comprises - aside of said fusion protein - another
distinct peptide which fulfils the requirements of peptide b in item 1 in lieu thereof.
[0193] In any event, the inventive medical application of such RNA encoding an HA tagged
Fusion (F) protein is clearly contemplated by the present invention, for example as
vaccine or in a method of treatment as disclosed herein.
[0194] In the present invention, if not otherwise indicated, different features of alternatives
and embodiments may be combined with each other, where suitable. Furthermore, the
term "comprising" shall not be narrowly construed as being limited to "consisting
of" only, if not specifically mentioned. Rather, in the context of the present invention,
"consisting of" is an embodiment specifically contemplated by the inventors to fall
under the scope of "comprising", wherever "comprising" is used herein.
[0195] All publications, patents and patent applications cited in this specification are
herein incorporated by reference as if each individual publication or patent application
were specifically and individually indicated to be incorporated by reference. Although
the foregoing invention has been described in some detail by way of illustration and
example for purposes of clarity of understanding, it will be readily apparent to those
of ordinary skill in the art in light of the teachings of this invention that certain
changes and modifications may be made thereto without departing from the spirit or
scope of the appended claims.
Figures:
[0196] The following Figures are intended to illustrate the invention further. They are
not intended to limit the subject matter of the invention thereto.
- Figure 1:
- shows the induction of a RSV F protein specific CTL immune response in BALB/c mice
after vaccination with mRNA coding for RSV Long F protein and mRNA coding for HA (Hemagglutinin
of A/Puerto Rico/8/34), injected in one pharmaceutical composition (F (RSV Long) +
HA cocktail) or separately injected (F (RSV Long) + HA sep. injected). To control
for unspecific immune effects of the cocktail application, one group was treated with
a cocktail of mRNA coding for F protein (RSV Long) and a non-coding RNA. For negative
control, mice were treated with buffer. One week after the last vaccination antigen
specific T cells were analysed in spleens of vaccinated mice by ELISPOT analysis.
Splenocytes were either stimulated with an H-2kd-restricted T-cell epitope of the F protein KYKNAVTEL (amino acids 85-93; SEQ ID No.
24) or DMSO alone. Lines represent the median. Statistical analysis was done by the
Mann-Whitney test. As can be seen from the results, the combination of both coding
mRNAs in one vaccine synergistically increases the induction of F protein specific
cytotoxic T cells (CTLs). But this effect is only visible if both mRNAs are comprised
in the same pharmaceutical composition (combination vaccine) and are not separately
injected.
- Figure 2:
- shows the induction of a RSV F protein specific CTL immune response in BALB/c mice
after vaccination with mRNA coding for RSV A2 F protein and mRNA coding for HA (Hemagglutinin
of A/Puerto Rico/8/34), injected in one pharmaceutical composition (F (RSV A2) + HA
cocktail) or separately injected (F (RSV A2) + HA sep. injected). For negative control,
mice were treated with buffer. Four weeks after the last vaccination antigen specific
T cells were analysed in spleens of vaccinated mice by ELISPOT analysis. Splenocytes
were either stimulated with three H-2kd-restricted T-cell epitopes of the F protein (KYKNAVTEL (amino acids 85-93; SEQ ID
No. 24), TYMLTNSELL (amino acids 249-258; SEQ ID No. 25), FPQAETCKV (amino acids 352-360;
SEQ ID No. 26)) or DMSO alone. Lines represent the median. As can be seen from the
results, the combination of both coding mRNAs in one vaccine synergistically increases
the induction of F protein specific cytotoxic T cells (CTLs). But this effect is only
visible if both mRNAs are comprised in the same pharmaceutical composition (combination
vaccine) and are not separately injected.
- Figure 3:
- shows the induction of RSV F protein specific antibodies in BALB/c mice 2 weeks after
the last vaccination with mRNA coding for RSV Long F protein and mRNA coding for HA
(Hemagglutinin of A/Puerto Rico/8/34), injected in one pharmaceutical composition
(F (RSV Long) + HA cocktail) or separately injected (F (RSV Long) + HA sep. injected).
To control for unspecific immune effects of the cocktail application, one group was
treated with a cocktail of mRNA coding for F protein (RSV Long) and a non-coding RNA.
For negative control, mice were treated with buffer. Two weeks after the last vaccination
F protein specific antibodies were analysed in serum of vaccinated mice.. Lines represent
the median. As can be seen from the results, the combination of both coding mRNAs
in one pharmaceutical composition increases the induction of F protein specific antibodies
in 3 of 5 mice compared to the group vaccinated with the combination of mRNA coding
for F protein and non-coding RNA.
- Figure 4:
- shows the induction of HA protein specific antibodies in BALB/c mice 4 weeks after
the last vaccination with mRNA encoding the HA protein of A/Puerto Rico/8/1934 or
a combination of HA mRNA and F protein (RSV Long) encoding mRNA vaccine. Mice either
received the two mRNAs at separate injection sites (F+HA sep. injected) or as a cocktail
of both mRNAs. For negative control, mice were treated with buffer. Four weeks after
second immunization antigen specific antibodies were analysed in serum of vaccinated
mice. Lines represent the median. As can be seen from the results, the combination
of both coding mRNAs has no effect on the induction of HA protein specific antibodies
compared to the group with was vaccinated only with mRNA coding for HA.
- Figure 5:
- shows the protein sequence of the Fusion (F) protein of RSV Long (NCBI Accession No.
AAX23994) according to SEQ ID No. 1.
- Figure 6:
- shows the protein sequence of the Fusion (F) protein of RSV A2 (NCBI Accession No.
AAB59858) according to SEQ ID No. 2.
- Figure 7:
- shows the protein sequence of the Hemagglutinin (HA) protein of Influenza A/Puerto
Rico/8/1934 (NCBI Accession No. ABO21709) according to SEQ ID No. 3.
- Figure 8:
- shows the wild type coding sequence of Fusion (F) protein of RSV Long (Human respiratory
syncytial virus strain ATCC VR-26 (NCBI Accession No. AY911262) according to SEQ ID
No. 4.
- Figure 9:
- shows the wild type coding sequence of Fusion (F) protein of RSV A2 (NCBI Accession
No. M11486.1) according to SEQ ID No. 5.
- Figure 10:
- shows the wild type coding sequence of Hemagglutinin (HA) protein of Influenza A/Puerto
Rico/8/1934 (NCBI Accession No. EF467821) according to SEQ ID No. 6.
- Figure 11:
- shows the GC-enriched DNA coding sequence (SEQ ID No. 7) coding for the Fusion (F)
protein of RSV Long.
- Figure 12:
- shows the GC-enriched DNA coding sequence (SEQ ID No. 8) coding for the Fusion (F)
protein of RSV A2.
- Figure 13:
- shows the GC-enriched DNA coding sequence (SEQ ID No. 9) coding for the Fusion (F)
protein of RSV A2 (P102A).
- Figure 14:
- shows the GC-enriched DNA coding sequence (SEQ ID No. 10) coding for the Fusion (F)
protein of RSV A2 (I379V).
- Figure 15:
- shows the GC-enriched DNA coding sequence (SEQ ID No. 11) coding for the Fusion (F)
protein of RSV A2 (M447V).
- Figure 16:
- shows the GC-enriched DNA coding sequence (SEQ ID No: 12) coding for the Hemagglutinin
(HA) protein of Influenza A/Puerto Rico/8/1934.
- Figure 17:
- shows an GC-enriched RNA sequence without UTRs (SEQ ID No. 13) coding for the Fusion
(F) protein of RSV Long.
- Figure 18:
- shows an GC-enriched RNA sequence without UTRs (SEQ ID No. 14) coding for the Fusion
(F) protein of RSV A2.
- Figure 19:
- shows an GC-enriched RNA sequence without UTRs (SEQ ID No. 15) coding for the Fusion
(F) protein of RSV A2 (P102A).
- Figure 20:
- shows an GC-enriched RNA sequence without UTRs (SEQ ID No. 16) coding for the Fusion
(F) protein of RSV A2 (I379V).
- Figure 21:
- shows an GC-enriched RNA sequence without UTRs (SEQ ID No. 17) coding for the Fusion
(F) protein of RSV A2 (M447V).
- Figure 22:
- shows an GC-enriched RNA sequence without UTRs (SEQ ID No: 18) coding for the Hemagglutinin
(HA) protein of Influenza A/Puerto Rico/8/1934.
- Figure 23:
- shows the GC-enriched full mRNA sequence coding for the Fusion (F) protein of RSV
Long according to SEQ ID No. 19.
- Figure 24:
- shows the GC-enriched full mRNA sequence coding for the Fusion (F) protein of RSV
A2 according to SEQ ID No. 20.
- Figure 25:
- shows the GC-enriched full mRNA sequence coding for the Hemagglutinin (HA) protein
of Influenza A/Puerto Rico/8/1934 according to SEQ ID No. 21.
- Figure 26:
- shows the non-coding RNA according to SEQ ID No. 23 used as a control.
Examples
[0197] The following examples are intended to illustrate the invention further. They are
not intended to limit the subject matter of the invention thereto.
Example 1 - Preparation of mRNA constructs
[0198] For the present examples DNA sequences, encoding the F protein of RSV-Long (SEQ ID
No. 1), RSV-A2 (SEQ ID No. 2) and Hemagglutinin of A/Puerto Rico/8/34 (HA) (SEQ ID
No. 3), and non-coding RNA as control (SEQ ID No. 23), were prepared and used for
subsequent
in vitro transcription reactions.
[0199] All used DNA sequences (SEQ ID No. 7, SEQ ID No. 8 and SEQ ID No: 12) were prepared
by modifying the wild type encoding DNA sequences by introducing a GC-optimized sequence
for a better codon usage and stabilization. In SEQ ID No. 19, SEQ ID No. 20 and SEQ
ID No. 21 the sequences of the corresponding mRNAs are shown. The sequences was furthermore
introduced into a pCV19 vector and modified to comprise stabilizing sequences derived
from alpha-globin-3'-UTR (muag (mutated alpha-globin-3'-UTR)), a histone-stem-loop
structure, and a stretch of 70 × adenosine at the 3'-terminal end (poly-A-tail).
[0200] In a further step, the respective DNA plasmids prepared above were transcribed into
mRNA
in vitro using T7-Polymerase. Subsequently the obtained mRNA was purified using PureMessenger
® (CureVac, Tübingen, Germany).
[0201] All obtained mRNAs used herein were furthermore complexed with protamine prior to
use. The mRNA complexation consisted of a mixture of 50% free mRNA and 50% mRNA complexed
with protamine at a weight ratio of 2:1. First, mRNA was complexed with protamine
by slow addition of protamine-Ringer's lactate solution to mRNA. As soon as the complexes
were stably generated, free mRNA was added, stirred shortly and the final concentration
of the vaccine was adjusted with Ringer's lactate solution.
Example 2 - Vaccination of mice with RSV A2 and Influenza HA
[0202] BALB/c mice were vaccinated twice intradermally with the vaccine comprising 80 µg
mRNA coding for HA (Hemagglutinin of A/Puerto Rico/8/34) and 80 µg mRNA coding for
F protein (RSV-A2). Mice either received the two mRNAs at separate injection sites
(F (RSV A2) + HA sep. injected) or as a cocktail of both mRNAs (F (RSV A2) + HA cocktail).
For negative control, mice were treated with buffer.
Example 3 - Vaccination of mice with RSV Long and Influenza HA
[0203] BALB/c mice were vaccinated twice intradermally with the vaccine comprising 10 µg
mRNA coding for HA (Hemagglutinin of A/Puerto Rico/8/34) and 10 µg mRNA coding for
F protein (RSV-Long). Mice either received the two mRNAs at separate injection sites
(F (RSV Long) + HA sep. injected) or as a cocktail of both mRNAs (F (RSV Long) + HA
cocktail. To control for unspecific immune effects of the cocktail application, one
group was treated with a cocktail of F (RSV Long) mRNA and a non-coding RNA (F (RSV
Long) + non-coding RNA). For negative control, mice were treated with buffer.
Example 4 - Detection of an antigen-specific B-cell immune response (antibodies):
[0204] Detection of an antigen specific immune response was carried out by detecting RSV
F protein or HA protein specific antibodies. Therefore, blood samples were taken from
vaccinated mice two and four weeks after the last vaccination and sera were prepared.
MaxiSorp
® plates (Nalgene Nunc International) were coated with F (Sino Biological Inc.) or
HA protein (Charles River Laboratories). After blocking with 1×PBS containing 0.05%
Tween-20 and 1% BSA the plates were incubated with diluted mouse serum (1:50). Subsequently
a biotin-coupled secondary antibody (Anti-mouse-IgG Dianova, cat. #115035003) was
added. After washing, the plate was incubated with Horseradish peroxidase-streptavidin
and subsequently the conversion of the ABTS substrate (2,2'-azino-bis(3-ethyl-benzthiazoline-6-sulfonic
acid) was measured. Results of these experiments are shown in Fig. 3 and 4.
Example 5 - Detection of an antigen specific cellular immune response by ELISPOT:
[0205] Four weeks (mice immunized with HA and RSV-A2, example 2) or one week (mice immunized
with HA and RSV-Long, example 3) after the last vaccination mice were sacrificed,
the spleens were removed and the splenocytes were isolated. For detection of INFgamma
a coat multiscreen plate (Millipore) was incubated overnight with coating buffer 0.1
M Carbonat-Bicarbonat Buffer pH 9.6, 10.59 g/l Na
2CO
3, 8.4g/l NaHCO
3) comprising antibody against INFy (BD Pharmingen, Heidelberg, Germany). The next
day 5 × 10
5 cells/well were added and re-stimulated with a cocktail of F protein specific epitopes
KYKNAVTEL (amino acids 85-93; SEQ ID No. 24), TYMLTNSELL (amino acids 249-258; SEQ
ID No. 25), FPQAETCKV (amino acids 352-360; SEQ ID No. 26), 1.25 µg of each epitope/well
(mice immunized with HA and RSV-A2, example 2), or with 1.25 µg/well of F protein
specific epitope KYKNAVTEL (amino acids 85-93; SEQ ID No. 24) alone (mice immunized
with HA and RSV-Long, example 3) . As control DMSO was used. Afterwards the cells
are incubated for 24h at 37°C. The next day the plates were washed twice with PBS,
once with water and once with PBS/0.05% Tween-20 and afterwards incubated with a biotin-coupled
secondary antibody for 11-24h at 4°C. Then the plates were washed with PBS/0.05% Tween-20
and incubated for 2h with alkaline phosphatase coupled to streptavidin in blocking
buffer. After washing with PBS/0.05% Tween-20 the substrate (5-Bromo-4-Cloro-3-lndolyl
Phosphate/Nitro Blue Tetrazolium Liquid Substrate System from Sigma Aldrich, Taufkirchen,
Germany) was added to the plate and the conversion of the substrate could be detected
visually. The reaction was then stopped by washing the plates with water. The dried
plates were then read out by an ELISPOT plate reader. For visualization of the spot
levels the numbers were corrected by background subtraction. Results of these experiments
were shown in Fig. 1 and 2.
Items
[0206]
- 1. Combination vaccine providing at least a first and a second antigenic function;
the combination vaccine comprising at least one RNA encoding at least one or more
proteins or fragments, variants or derivatives of proteins awarding the antigenic
functions; wherein the first antigenic function being a Fusion (F) protein or a fragment,
variant or derivative of a Fusion (F) protein derived from the virus family Paramyxoviridae and the second antigenic function being an Hemagglutinin (HA) protein or a fragment,
variant or derivative of an Hemagglutinin (HA) protein derived from the virus family
Orthomyxoviridae.
- 2. Combination vaccine according to item 1, wherein said at least one RNA is mRNA.
- 3. Combination vaccine according to item 1 or 2, wherein the antigenic functions are
provided by the combination vaccine in the form of monocistronic RNAs, whereby a first
monocistronic RNA encodes a Fusion (F) protein or a fragment, variant or derivative
thereof and a second monocistronic RNA encodes an Hemagglutinin (HA) protein or a
fragment, variant or derivative thereof.
- 4. Combination vaccine according to item 1 or 2, wherein the antigenic functions are
provided by the combination vaccine in the form of a bicistronic or a multicistronic
RNA wherein at least one open reading frame encodes a Fusion (F) protein or a fragment,
variant or derivative thereof and wherein at least another open reading frame encodes
an Hemagglutinin (HA) protein or fragment, variant or derivative thereof.
- 5. Combination vaccine according to item 1 or 2, wherein the antigenic functions are
provided by the combination vaccine in the form of a monocistronic RNA encoding a
Fusion (F) protein or a fragment, variant or derivative thereof and encoding an Hemagglutinin
(HA) protein or a fragment, variant or derivative thereof as a fusion protein.
- 6. Combination vaccine according to any of items 1 to 5, wherein at least one Fusion
(F) protein is derived from viruses selected from: Avulavirus, Ferlavirus, Henipavirus,
Morbillivirus, Respirovirus, Rubulavirus, TPMV-like viruses, Pneumovirus, Metapneumovirus,
Atlantic salmon paramyxovirus, Beilong virus, J virus, Mossman virus, Nariva virus,
Salem virus, or Pacific salmon paramyxovirus.
- 7. Combination vaccine according to any of items 1 to 6, wherein the Fusion (F) protein
is derived from human respiratory syncytial virus (RSV), preferably selected from
RSV Long or RSV A2, more preferably the Fusion (F) protein is a protein according
to one of the sequences according to SEQ ID No. 1 or SEQ ID No. 2.
- 8. Combination vaccine according to any of items 1 to 7, wherein the Fusion (F) protein
is derived from human respiratory syncytial virus (RSV), selected from RSV Long or
RSV A2, and wherein the Fusion (F) protein is a protein encoded by one of the sequences
according to SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 19, or SEQ ID No. 20.
- 9. Combination vaccine according to any of items 1 to 8, wherein the at least one
Hemagglutinin (HA) protein is derived from an Influenza virus, preferably selected
from: Influenza A (e.g. H1N1, H1N2, H2N2, H3N1, H3N2, H3N8, H5N1, H5N2, H5N3, H5N8,
H5N9, H7N1, H7N2, H7N3, H7N4, H7N7, H9N1, H9N2, H10N7), Influenza B, Influenza C,
Isavirus (e.g. Infectious salmon anemia virus), Thogotovirus (e.g. Dhori virus), Quaranfil
virus, Johnston Atoll virus, or Lake Chad virus, more preferably the Hemagglutinin
(HA) protein is a protein according to the sequence according to SEQ ID No. 3 or is
encoded by one of the sequences according to SEQ ID No. 6, or SEQ ID No. 21.
- 10. Combination vaccine according to any of items 1 to 9, wherein the combination
vaccine comprises at least two nucleic acids, in particular at least two monocistronic
RNAs, wherein the combination vaccine is selected from the group:
a) at least one nucleic acid, in particular at least one monocistronic RNA encoding
SEQ ID No.: 1 and at least one nucleic acid, in particular at least one monocistronic
RNA encoding SEQ ID No.: 3, and
(b) at least one nucleic acid , in particular at least one monocistronic RNA encoding
SEQ ID No.: 2 and at least one nucleic acid, in particular at least one monocistronic
RNA encoding SEQ ID No.: 3,
or functional fragments, variants or derivatives of any of the above SEQ ID Nos..
- 11. Combination vaccine according to any of items 1 to 10, wherein the combination
vaccine comprises at least two monocistronic RNAs, wherein the combination vaccine
is selected from the group:
- (a) at least one monocistronic RNA according to SEQ ID No.: 13 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
- (b) at least one monocistronic RNA according to SEQ ID No.: 14 and at least one monocistronic
RNA according to SEQ ID No.: 18 or according to SEQ ID No.: 21,
- (c) at least one monocistronic RNA according to SEQ ID No.: 15 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
- (d) at least one monocistronic RNA according to SEQ ID No.: 16 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
- (e) at least one monocistronic RNA according to SEQ ID No.: 17 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
- (f) at least one monocistronic RNA according to SEQ ID No.: 19 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21, and
- (g) at least one monocistronic RNA according to SEQ ID No.: 20 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
or functional fragments, variants or derivatives of any of the above SEQ ID Nos..
- 12. Combination vaccine according to any of items 1 to 11, wherein at least one RNA
comprises at least one of the following structural elements: a histone-stem-loop structure,
preferably a histone-stem-loop in its 3' untranslated region, a 5'-Cap structure,
a poly(C) sequence, a poly-A tail and/or a polyadenylation signal.
- 13. Combination vaccine according to any of items 1 to 12, wherein at least one RNA
is a stabilized RNA, preferably a RNA stabilized by backbone modifications, sugar
modifications and/or base modifications, more preferred a RNA stabilized by modification
of the G/C-content.
- 14. Combination vaccine according to any of items 1 to 13, wherein at least one RNA
is optimized for translation, preferably optimized for translation by replacing codons
for less frequent tRNAs of a given amino acid by codons for more frequently occurring
tRNAs for said amino acid.
- 15. Combination vaccine according to any of items 1 to 14, wherein at least one RNA
is associated with or complexed with a cationic or polycationic compound or a polymeric
carrier, optionally in a weight ratio selected from a range of about 6:1 (w/w) to
about 0.25:1 (w/w), more preferably from about 5:1 (w/w) to about 0.5:1 (w/w), even
more preferably of about 4:1 (w/w) to about 1:1 (w:w) or of about 3:1 (w/w) to about
1:1 (w/w), and most preferably a ration of about 3:1 (w/w) to about 2:1 (w/w) of mRNA
to cationic or polycationic compound and/or with a polymeric carrier; or optionally
in a nitrogen/phosphate ratio of mRNA to cationic or polycationic compound and/or
polymeric carrier in the range of about 0.1-10, preferably in a range of about 0.3-4
or 0.3-1, and most preferably in a range of about 0.5-1 or 0.7-1, and even most preferably
in a range of about 0.3-0.9 or 0.5-0.9.
- 16. Combination vaccine according to item 15, wherein at least one RNA is associated
or complexed with a cationic protein or peptide, preferably protamine.
- 17. Combination vaccine according to any of items 1 to 16 wherein the combination
vaccine further comprises an adjuvant component; preferably an adjuvant comprising
or consisting of an oligo- or a polynucleotide; more preferably an adjuvant comprising
or consisting of a RNA or a DNA; even more preferably an adjuvant comprising or consisting
of a RNA or a DNA, said RNA or DNA being complexed with a cationic or polycationic
compound and/or with a polymeric carrier; optionally in a weight ratio selected from
a range of about 6:1 (w/w) to about 0.25:1 (w/w), more preferably from about 5:1 (w/w)
to about 0.5:1 (w/w), even more preferably of about 4:1 (w/w) to about 1:1 (w:w) or
of about 3:1 (w/w) to about 1:1 (w/w), and most preferably a ration of about 3:1 (w/w)
to about 2:1 (w/w) of adjuvant component to cationic or polycationic compound and/or
with a polymeric carrier; or optionally in a nitrogen/phosphate ratio of the adjuvant
component to cationic or polycationic compound and/or polymeric carrier in the range
of about 0.1-10, preferably in a range of about 0.3-4 or 0.3-1, and most preferably
in a range of about 0.7-1 or 0.5-1, and even most preferably in a range of about 0.3-0.9
or 0.5-0.9.
- 18. Combination vaccine according to any of items 1 to 17, wherein the combination
vaccine comprises
- a) said at least one RNA; preferably in form of a mono-, bi- or multicistronic RNA,
optionally being stabilized, optionally being optimized for translation and/or optionally
being complexed with a cationic or polycationic compound or a polymeric carrier;
- b) optionally an adjuvant component, comprising or consisting of said at least one
RNA and/or at least one adjuvant nucleic acid, complexed with a cationic or polycationic
compound and/or with a polymeric carrier, and
- c) optionally a pharmaceutically acceptable carrier.
- 19. Combination vaccine according to any of items 1 to 18, wherein the combination
vaccine furthermore comprises a pharmaceutically acceptable vehicle.
- 20. Combination vaccine according to any of items 1 to 19, wherein the combination
vaccine furthermore comprises at least one adjuvant, an auxiliary substance selected
from lipopolysaccharides, TNF-alpha, CD40 ligand, or cytokines, monokines, lymphokines,
interleukins or chemokines, IL-1, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-9,
IL-10, IL-12, IL-13, IL-14, IL-15, IL-16, IL-17, IL-18, IL-19, IL-20, IL-21, IL-22,
IL-23, IL-24, IL-25, IL-26, IL-27, IL-28, IL-29, IL-30, IL-31, IL-32, IL-33, IFN-alpha,
IFN-beta, IFN-gamma, GM-CSF, G-CSF, M-CSF, LT-beta, TNF-alpha, growth factors, and
hGH, a ligand of human Toll-like receptor TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7,
TLR8, TLR9, TLR10, a ligand of murine Toll-like receptor TLR1, TLR2, TLR3, TLR4, TLR5,
TLR6, TLR7, TLR8, TLR9, TLR10, TLR11, TLR12 or TLR13, a ligand of a NOD-like receptor,
a ligand of a RIG-I like receptor, an immunostimulatory nucleic acid, an immunostimulatory
RNA (isRNA), a CpG-DNA, an antibacterial agent, or an anti-viral agent.
- 21. Combination vaccine according to any of items 1 to 20 for use in a method of prophylactic
and/or therapeutic treatment of infections caused by viruses of the virus family Paramyxoviridae and/or of the virus family Orthomyxoviridae, particularly respiratory tract infections; preferably RSV infection, mumps, measles,
bronchitis, pneumonia, croup, distemper or rinderpest, and/or influenza.
- 22. Combination vaccine for use in a method according to item 21 wherein the method
comprises the in vitro transfection of isolated cells.
- 23. Combination vaccine for use in a method according to any of items 21 or 22, wherein
the combination vaccine is administered parenterally, orally, nasally, pulmonary,
by inhalation, topically, rectally, buccally, vaginally, or via an implanted reservoir.
- 24. Combination vaccine for use in a method according to any of items 21 to 23 wherein
an individual is treated with the combination vaccine and wherein the individual is
selected from to the group comprising infants, particularly pre-term infants, children,
the elderly and immunocompromised patients.
- 25. Kit or kit of parts comprising the components of at least one combination vaccine
according to any of items 1 to 20 and optionally technical instructions with information
on the administration and dosage of the combination vaccine, wherein the combination
vaccine contains one or more mRNAs encoding a first and a second antigen, wherein
the first antigen is a Fusion (F) protein or a fragment, variant or derivative of
a Fusion (F) protein derived from the virus family Paramyxoviridae and wherein the second antigen is an Hemagglutinin (HA) protein or a fragment, variant
or derivative of an Hemmagglutinin (HA) protein derived from the virus family Orthomyxoviridae.
- 26. Composition comprising:
- a) an RNA, preferably mRNA, comprising or consisting of a nucleic acid sequence encoding
a protein or peptide, said protein or peptide comprising or consisting of:
- i) the amino acid sequence of a Fusion (F) protein of the virus family Paramyxoviridae;
- ii) the amino acid sequence of a fragment of said Fusion (F) protein of the virus
family Paramyxoviridae, said fragment having a length of at least 5 amino acids; and/or
- iii) an amino acid sequence exhibiting a sequence identity of at least 80% to said
Fusion (F) protein of the virus family Paramyxoviridae of a) i) and/ or said fragment of a) ii);
and further comprising
- b) an RNA, preferably mRNA, comprising or consisting of a nucleic acid sequence encoding
a protein or peptide, said protein or peptide comprising or consisting of:
- i) the amino acid sequence of a Hemagglutinin (HA) protein of the virus family Orthomyxoviridae,
- ii) the amino acid sequence of a fragment of said Hemagglutinin (HA) protein of the
virus family Orthomyxoviridae, said fragment having a length of at least 5 amino acids and/or
- iii) an amino acid sequence exhibiting a sequence identity of at least 80% to said
Hemagglutinin (HA) protein of the virus family Orthomyxoviridae of b) i) and/ or said fragment of b) ii).
- 27. The composition according to item 26, wherein the RNA of a) and/or the RNA of
b) are mRNA.
- 28. The composition according to item 27, wherein the RNA of a) and the RNA of b)
are not the same molecule.
- 29. The composition according to any of items 26 to 28, wherein the composition comprises
(i) an RNA comprising the sequence of SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 19
or SEQ ID No. 20; and (ii) comprises an RNA comprising the sequence of SEQ ID No:
18 or SEQ ID No. 21.
- 30. Composition according to any of items 26 to 29, wherein the composition comprises
at least two monocistronic RNAs, wherein the composition is selected from the group:
- (a) at least one monocistronic RNA according to SEQ ID No.: 13 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
- (b) at least one monocistronic RNA according to SEQ ID No.: 14 and at least one monocistronic
RNA according to SEQ ID No.: 18 or according to SEQ ID No.: 21,
- (c) at least one monocistronic RNA according to SEQ ID No.: 15 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
- (d) at least one monocistronic RNA according to SEQ ID No.: 16 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
- (e) at least one monocistronic RNA according to SEQ ID No.: 17 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
- (f) at least one monocistronic RNA according to SEQ ID No.: 19 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21, and
- (g) at least one monocistronic RNA according to SEQ ID No.: 20 and at least one monocistronic
RNA according to SEQ ID No.: 18 or SEQ ID No.: 21,
or functional fragments, variants or derivatives of any of the above SEQ ID Nos.
- 31. The composition according to any of items 26 to 30, wherein the composition is
a pharmaceutical composition optionally further comprising a pharmaceutically acceptable
carrier, excipient or diluent.
- 32. The composition according to any of items 26 to 31 for use in a method of prophylactic
and/or therapeutic treatment of the human or animal body.
- 33. The composition according to any of items 26 to 32 for use in a method of prophylactic
and/or therapeutic treatment of infections caused by viruses of the virus family Paramyxoviridae and/or of the virus family Orthomyxoviridae, particularly respiratory tract infections; preferably RSV infection, mumps, measles,
bronchitis, pneumonia, croup, distemper or rinderpest, and/or influenza.
- 34. The composition according to any of items 26 to 33 for use as vaccine.
- 35. Nucleic acid comprising or consisting of a sequence selected from the group consisting
of: SEQ ID No. 7, SEQ ID No. 8, SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID
No: 12, SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. 15, SEQ ID No. 16, SEQ ID No. 17,
SEQ ID No: 18, SEQ ID No. 19, SEQ ID No. 20; and SEQ ID No. 21.